Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 4 |
| Arg | 5 |
| Asn | 2 |
| Asp | 2 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 2 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig13 | 46 | 119382 ..119307 | 0..0 | 87.88 | 68.91 |
| Ala | GGC | Contig13 | 47 | 57874 ..57799 | 0..0 | 76.92 | 57.94 |
| Ala | TGC | Contig13 | 38 | 645318 ..645243 | 0..0 | 96.50 | 80.20 |
| Ala | TGC | Contig13 | 40 | 640274 ..640199 | 0..0 | 96.50 | 80.20 |
| Arg | CCG | Contig13 | 43 | 304125 ..304049 | 0..0 | 87.30 | 65.06 |
| Arg | CCT | Contig13 | 17 | 961096 ..961170 | 0..0 | 76.01 | 55.04 |
| Arg | GCG | Contig13 | 36 | 654867 ..654791 | 0..0 | 86.08 | 59.66 |
| Arg | TCG | Contig13 | 5 | 126093 ..126169 | 0..0 | 89.74 | 72.84 |
| Arg | TCT | Contig13 | 3 | 125884 ..125960 | 0..0 | 88.19 | 71.73 |
| Asn | GTT | Contig13 | 6 | 371105 ..371180 | 0..0 | 83.40 | 59.82 |
| Asn | GTT | Contig13 | 8 | 405423 ..405498 | 0..0 | 83.40 | 59.82 |
| Asp | GTC | Contig13 | 49 | 22515 ..22438 | 0..0 | 83.86 | 60.94 |
| Asp | GTC | Contig13 | 50 | 22366 ..22289 | 0..0 | 81.76 | 58.84 |
| Cys | GCA | Contig13 | 10 | 677738 ..677814 | 0..0 | 70.04 | 41.79 |
| Gln | CTG | Contig13 | 42 | 343766 ..343693 | 0..0 | 61.96 | 33.50 |
| Gln | TTG | Contig13 | 20 | 983796 ..983870 | 0..0 | 69.97 | 43.65 |
| Glu | CTC | Contig13 | 16 | 961018 ..961092 | 0..0 | 60.63 | 27.98 |
| Glu | TTC | Contig13 | 23 | 1436794..1436869 | 0..0 | 79.61 | 55.50 |
| Gly | CCC | Contig13 | 26 | 1562595..1562670 | 0..0 | 97.83 | 82.00 |
| Gly | GCC | Contig13 | 33 | 682946 ..682872 | 0..0 | 96.77 | 83.08 |
| Gly | TCC | Contig13 | 2 | 125791 ..125866 | 0..0 | 96.52 | 81.52 |
| His | GTG | Contig13 | 4 | 125984 ..126059 | 0..0 | 92.24 | 69.83 |
| Ile | GAT | Contig13 | 37 | 645399 ..645323 | 0..0 | 95.79 | 73.18 |
| Ile | GAT | Contig13 | 39 | 640355 ..640279 | 0..0 | 95.79 | 73.18 |
| Leu | CAA | Contig13 | 34 | 665907 ..665819 | 0..0 | 75.59 | 43.56 |
| Leu | CAG | Contig13 | 22 | 1342233..1342319 | 0..0 | 77.80 | 50.30 |
| Leu | GAG | Contig13 | 48 | 45625 ..45538 | 0..0 | 64.60 | 34.56 |
| Leu | TAA | Contig13 | 44 | 208831 ..208742 | 0..0 | 80.98 | 49.06 |
| Leu | TAG | Contig13 | 32 | 683043 ..682957 | 0..0 | 79.56 | 47.81 |
| Lys | CTT | Contig13 | 18 | 961178 ..961253 | 0..0 | 91.78 | 72.22 |
| Lys | TTT | Contig13 | 31 | 683124 ..683049 | 0..0 | 91.49 | 71.35 |
| Met | CAT | Contig13 | 11 | 677823 ..677898 | 0..0 | 94.06 | 73.68 |
| Met | CAT | Contig13 | 41 | 357741 ..357666 | 0..0 | 96.47 | 76.27 |
| Met | CAT | Contig13 | 45 | 208711 ..208635 | 0..0 | 83.33 | 58.48 |
| Phe | GAA | Contig13 | 25 | 1436964..1437039 | 0..0 | 97.38 | 74.58 |
| Pro | CGG | Contig13 | 21 | 1257290..1257366 | 0..0 | 76.97 | 49.62 |
| Pro | GGG | Contig13 | 15 | 891345 ..891421 | 0..0 | 88.43 | 65.92 |
| Pro | TGG | Contig13 | 1 | 125711 ..125787 | 0..0 | 95.47 | 71.92 |
| Ser | CGA | Contig13 | 9 | 588725 ..588810 | 0..0 | 45.38 | 24.48 |
| Ser | GCT | Contig13 | 35 | 654993 ..654904 | 0..0 | 83.70 | 54.38 |
| Ser | GGA | Contig13 | 28 | 1415320..1415230 | 0..0 | 65.47 | 36.45 |
| Ser | TGA | Contig13 | 29 | 1393416..1393329 | 0..0 | 49.88 | 34.81 |
| Thr | CGT | Contig13 | 7 | 387866 ..387941 | 0..0 | 86.03 | 65.88 |
| Thr | GGT | Contig13 | 30 | 913667 ..913591 | 0..0 | 69.64 | 49.63 |
| Thr | TGT | Contig13 | 12 | 679035 ..679110 | 0..0 | 89.79 | 66.00 |
| Trp | CCA | Contig13 | 14 | 679392 ..679467 | 0..0 | 81.30 | 62.92 |
| Tyr | GTA | Contig13 | 13 | 679120 ..679206 | 0..0 | 74.59 | 39.76 |
| Val | CAC | Contig13 | 27 | 1837436..1837510 | 0..0 | 84.53 | 62.63 |
| Val | GAC | Contig13 | 19 | 983707 ..983781 | 0..0 | 87.48 | 65.58 |
| Val | TAC | Contig13 | 24 | 1436875..1436949 | 0..0 | 88.38 | 67.94 |
tRNA Models
Contig13.trna1 (125711-125787) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (125745-125747) Score: 95.47
HMM Sc=71.92 Sec struct Sc=23.55
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGTTGGCtAGCGCGCCTGTCTTGGGAACAGGAGGtCGCTGGTTCGAGTCCAGTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna2 (125791-125866) Length: 76 bp
Type: Gly Anticodon: TCC at 34-36 (125824-125826) Score: 96.52
HMM Sc=81.52 Sec struct Sc=15.00
* | * | * | * | * | * | * | *
Seq: GCGGGTGTAGCTCAATTGGTAGAGCATCGGCCTTCCAAGCCGAGGGtTGCGGGTTCGAGTCCCGTCGCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna3 (125884-125960) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (125918-125920) Score: 88.19
HMM Sc=71.73 Sec struct Sc=16.46
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAACAGGAtAGAGCACCGGACTTCTAATCCGGGGGtTGTGGGTTCGACTCCCGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna4 (125984-126059) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (126017-126019) Score: 92.24
HMM Sc=69.83 Sec struct Sc=22.41
* | * | * | * | * | * | * | *
Seq: GTGGCTATAGCTCAGCTGGTAGAGCGCCTGACTGTGGATCAGGTGGtCGTGGGTTCAAATCCCACTAGCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna5 (126093-126169) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (126127-126129) Score: 89.74
HMM Sc=72.84 Sec struct Sc=16.90
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAATTGGAtAGAGCGTCGGACTTCGGATCCGAGGGtTGCGGGTTCAAATCCTGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna6 (371105-371180) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (371138-371140) Score: 83.40
HMM Sc=59.82 Sec struct Sc=23.58
* | * | * | * | * | * | * | *
Seq: TCCGGCGTAGCTCAATAGGCAGAGCGGGTGGCTGTTAACCACTAGGtTGGGGGTTCGAGTCCCTCCGCCGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna7 (387866-387941) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (387899-387901) Score: 86.03
HMM Sc=65.88 Sec struct Sc=20.15
* | * | * | * | * | * | * | *
Seq: GCCAATGTAGCTCAATCGGTAGAGCGGCGCATTCGTAATGCGTAGGtTGCGGGTTCGAGTCCCGCCGTTGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna8 (405423-405498) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (405456-405458) Score: 83.40
HMM Sc=59.82 Sec struct Sc=23.58
* | * | * | * | * | * | * | *
Seq: TCCGGCGTAGCTCAATAGGCAGAGCGGGTGGCTGTTAACCACTAGGtTGGGGGTTCGAGTCCCTCCGCCGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna9 (588725-588810) Length: 86 bp
Type: Ser Anticodon: CGA at 33-35 (588757-588759) Score: 45.38
HMM Sc=24.48 Sec struct Sc=20.90
* | * | * | * | * | * | * | * | *
Seq: GGCGTGCaCCGAACTGGCtAAGGGGCCGGTCTCGAAAACCGGTGGGCTTTTtGCCCtTGTGGGTTCGAGTCCCACCGCCTCCGCCA
Str: >>>>..>.>>...........<<<.>>>>>.......<<<<<..>>>.....<<<...>>>>>.......<<<<<<<<<.......
Contig13.trna10 (677738-677814) Length: 77 bp
Type: Cys Anticodon: GCA at 35-37 (677772-677774) Score: 70.04
HMM Sc=41.79 Sec struct Sc=28.25
* | * | * | * | * | * | * | *
Seq: GGCGACGTGGCCAAGCGGTctAAGGCGGGGGTCTGCAAAATCCCTATtCGTGGGTTCAAATCCCACCGTCGCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna11 (677823-677898) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (677856-677858) Score: 94.06
HMM Sc=73.68 Sec struct Sc=20.38
* | * | * | * | * | * | * | *
Seq: GGGCTCGTAGCTCAGTTGGCAGAGCGTCCGGCTCATAACCGGATGGtCGGGGGTTCGATTCCTCCCGAGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna12 (679035-679110) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (679068-679070) Score: 89.79
HMM Sc=66.00 Sec struct Sc=23.79
* | * | * | * | * | * | * | *
Seq: GCCAGCGTAGCTCAACCGGTAGAGCGATTGATTTGTAATCAATAGGtTGAGGGTTCGAGTCCCTCCGCTGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna13 (679120-679206) Length: 87 bp
Type: Tyr Anticodon: GTA at 35-37 (679154-679156) Score: 74.59
HMM Sc=39.76 Sec struct Sc=34.83
* | * | * | * | * | * | * | * | *
Seq: GGTGAGGTGCCCGAGTGGCcaAAGGGGGCGGACTGTAAATCCGCTGGCAGAATGCCTtCGAAGGTTCGAATCCTTCCCTCACCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<...>>>>>.......<<<<<<<<<<<<....
Contig13.trna14 (679392-679467) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (679425-679427) Score: 81.30
HMM Sc=62.92 Sec struct Sc=18.38
* | * | * | * | * | * | * | *
Seq: AGGGGCGTAGCTCAACTGGCAGAGCACCGGTCTCCAAAATCGGGTGtTGCGGGTTCAAGTCCTGCCGCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna15 (891345-891421) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (891379-891381) Score: 88.43
HMM Sc=65.92 Sec struct Sc=22.51
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCGCAGTTGGCtAGCGCGCTTGCATGGGGCGCAAGAGGtCGCTGGTTCAAGTCCAGTCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna16 (961018-961092) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (961051-961053) Score: 60.63
HMM Sc=27.98 Sec struct Sc=32.65
* | * | * | * | * | * | * |
Seq: GGCCCCATAGGATAACGGCtAGTCCATCGGATTCTCAGTCCGAAGGTCGGGGTTCGATTCCCCGTGGGGCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig13.trna17 (961096-961170) Length: 75 bp
Type: Arg Anticodon: CCT at 34-36 (961129-961131) Score: 76.01
HMM Sc=55.04 Sec struct Sc=20.97
* | * | * | * | * | * | * |
Seq: GCCCCAGTAGTTCAACGGAtAGAACGGCGGATTCCTAATCCGCAAATGGGGGTTCGATTCCTCCCTGGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig13.trna18 (961178-961253) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (961211-961213) Score: 91.78
HMM Sc=72.22 Sec struct Sc=19.56
* | * | * | * | * | * | * | *
Seq: GGGCCGTTAGCTCAACAGGTAGAGCACCTGACTCTTAATCAGGGGGcTGTGGGTTCGAGTCCCACACGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna19 (983707-983781) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (983739-983741) Score: 87.48
HMM Sc=65.58 Sec struct Sc=21.90
* | * | * | * | * | * | * |
Seq: GGGTGCGTAGCTCAGTGGGAGAGCGCTTCCTTGACGCGGAAGAGGtCGCAGGTTCAATCCCTGCCGCACCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna20 (983796-983870) Length: 75 bp
Type: Gln Anticodon: TTG at 34-36 (983829-983831) Score: 69.97
HMM Sc=43.65 Sec struct Sc=26.32
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGTCTAACTGGCAGGACACTGGACTTTGGCTCCAGCAGTGTAGGTTCGAGTCCTACCGCCCCAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig13.trna21 (1257290-1257366) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (1257324-1257326) Score: 76.97
HMM Sc=49.62 Sec struct Sc=27.35
* | * | * | * | * | * | * | *
Seq: CTGGGCGTAGTTCAGATGGCtAGAACGCCAGAATCGGGATCTGGAGGcCGTGGGTTCAAGTCCCACCGCCCAGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna22 (1342233-1342319) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (1342267-1342269) Score: 77.80
HMM Sc=50.30 Sec struct Sc=27.50
* | * | * | * | * | * | * | * | *
Seq: GCCGAGGTGGCGGAATTGGCaGACGCACATGACTCAGGATCATGTGGGATTTTTCCCGTGCGGGTTCAAGTCCCGCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna23 (1436794-1436869) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (1436828-1436830) Score: 79.61
HMM Sc=55.50 Sec struct Sc=24.11
* | * | * | * | * | * | * | *
Seq: GCCCCCATCGTCTAGCGGTctAGGACACTGGCCTTTCAAGCCAGAGGCACGGGTTCGAATCCCGTTGGGGGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig13.trna24 (1436875-1436949) Length: 75 bp
Type: Val Anticodon: TAC at 33-35 (1436907-1436909) Score: 88.38
HMM Sc=67.94 Sec struct Sc=20.44
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGAGGGAGAGCGCATGCCTTACAAGCATGAGGcCGTAGGTTCAAGTCCTACCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna25 (1436964-1437039) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (1436997-1436999) Score: 97.38
HMM Sc=74.58 Sec struct Sc=22.80
* | * | * | * | * | * | * | *
Seq: GGCGAGGTAGCTCAGTTGGTAGAGCAGTGGACTGAAAATCCACGTGtCGACGGTTCGATTCCGTCCCTCGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna26 (1562595-1562670) Length: 76 bp
Type: Gly Anticodon: CCC at 34-36 (1562628-1562630) Score: 97.83
HMM Sc=82.00 Sec struct Sc=15.83
* | * | * | * | * | * | * | *
Seq: GCGGGTGTAGCTCAGTTGGTAGAGCATCAGCTTCCCAAGCTGAGGGtCGCGGGTTCGAATCCCGTCGCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna27 (1837436-1837510) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (1837468-1837470) Score: 84.53
HMM Sc=62.63 Sec struct Sc=21.90
* | * | * | * | * | * | * |
Seq: GGGTGCGTAGCTCAGTGGGAGAGCGCTTCCTTCACACGGAAGAGGcCGCAGGTTCAATCCCTGCCGCACCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna28 (1415320-1415230) Length: 91 bp
Type: Ser Anticodon: GGA at 35-37 (1415286-1415284) Score: 65.47
HMM Sc=36.45 Sec struct Sc=29.02
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGGTGGCCGAGAGGTcgAAGGCGCACGCCTGGAGAGCGTGTGACGCCCACAaGGCGTCCGTGGGTTCAAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna29 (1393416-1393329) Length: 88 bp
Type: Ser Anticodon: TGA at 33-35 (1393384-1393382) Score: 49.88
HMM Sc=34.81 Sec struct Sc=15.07
* | * | * | * | * | * | * | * | *
Seq: GGCGTGTTCCGAATTGGCtAAGGGGCCGGTCTTGAAAACCGGTGGGGGTTACACCCCCGTGTGGGTTCGAGTCCCACCGCCTCCGCCA
Str: >>.>>>.>>>...........<<<.>>>>>.......<<<<<..>>>>......<<<<..>>>>>.......<<<<<<<.<.<<....
Contig13.trna30 (913667-913591) Length: 77 bp
Type: Thr Anticodon: GGT at 35-37 (913633-913631) Score: 69.64
HMM Sc=49.63 Sec struct Sc=20.01
* | * | * | * | * | * | * | *
Seq: GCAGGCGTAGCtTCAAGAGGTGGAGCGCCTCCTTGGTAAGGAGGAGGgTGTGGGTTCGAGTCCCACCGCCTGCTCCA
Str: >>>>>>>..>>.>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna31 (683124-683049) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (683091-683089) Score: 91.49
HMM Sc=71.35 Sec struct Sc=20.14
* | * | * | * | * | * | * | *
Seq: GACCTGGTAGCTCAGCCGGTAGAGCACCTGACTTTTAATCAGGGGGcCGCGGGTTCGAATCCCGCCCGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna32 (683043-682957) Length: 87 bp
Type: Leu Anticodon: TAG at 35-37 (683009-683007) Score: 79.56
HMM Sc=47.81 Sec struct Sc=31.75
* | * | * | * | * | * | * | * | *
Seq: GCGAGAGTGGCGGAATTGGCaGACGCGCTGGACTTAGAATCCAGTGGGCTCACGCCCGTGTGGGTTCAAGTCCCACCTCTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna33 (682946-682872) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (682914-682912) Score: 96.77
HMM Sc=83.08 Sec struct Sc=13.69
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGTGGTAGAGCGCCTGCTTGCCAAGCAGGAGGtCGCGGGTTCAAATCCCGTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna34 (665907-665819) Length: 89 bp
Type: Leu Anticodon: CAA at 35-37 (665873-665871) Score: 75.59
HMM Sc=43.56 Sec struct Sc=32.03
* | * | * | * | * | * | * | * | *
Seq: GCCGAGGTGGCGGAATTGGGaGACGCGGTTGACTCAAAATCAACTGGGGTTGACACCCCaTGCGGGTTCGAGTCCCGCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<...>>>>>.......<<<<<<<<<<<<....
Contig13.trna35 (654993-654904) Length: 90 bp
Type: Ser Anticodon: GCT at 35-37 (654959-654957) Score: 83.70
HMM Sc=54.38 Sec struct Sc=29.32
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCCGAGTGGTcgAAGGCGCTTGCCTGCTAAGCAAGTGTGGGGGTAACCCCACCGAGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig13.trna36 (654867-654791) Length: 77 bp
Type: Arg Anticodon: GCG at 35-37 (654833-654831) Score: 86.08
HMM Sc=59.66 Sec struct Sc=26.42
* | * | * | * | * | * | * | *
Seq: GTGCCCGTAGCTCAATTGGAtAGAGCGTCAGACTGCGGATCTGAAGGtTGGGAGTTCGAATCTCCCCGGGCACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna37 (645399-645323) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (645365-645363) Score: 95.79
HMM Sc=73.18 Sec struct Sc=22.61
* | * | * | * | * | * | * | *
Seq: GGGCTCGTAGCTCAGTTGGTcAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCGACTCCTCCCGAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna38 (645318-645243) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (645285-645283) Score: 96.50
HMM Sc=80.20 Sec struct Sc=16.30
* | * | * | * | * | * | * | *
Seq: GGGGACGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAAGtCAGGGGTTCGAATCCCCTCGTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna39 (640355-640279) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (640321-640319) Score: 95.79
HMM Sc=73.18 Sec struct Sc=22.61
* | * | * | * | * | * | * | *
Seq: GGGCTCGTAGCTCAGTTGGTcAGAGCGCACGCCTGATAAGCGTGAGGtCGGAGGTTCGACTCCTCCCGAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna40 (640274-640199) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (640241-640239) Score: 96.50
HMM Sc=80.20 Sec struct Sc=16.30
* | * | * | * | * | * | * | *
Seq: GGGGACGTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAAGtCAGGGGTTCGAATCCCCTCGTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna41 (357741-357666) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (357708-357706) Score: 96.47
HMM Sc=76.27 Sec struct Sc=20.20
* | * | * | * | * | * | * | *
Seq: GGCGGCGTAGCTCAGTGGCtAGAGCAACTGATTCATAATCAGTGAGtCATGGGTTCGAGTCCCATCGCCGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna42 (343766-343693) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (343734-343732) Score: 61.96
HMM Sc=33.50 Sec struct Sc=28.46
* | * | * | * | * | * | * |
Seq: TGGGAGGTCGTCTAACGGCAGGACTGCGGACTCTGGATCCGCCAGTGGTGGTTCGAATCCACCCCTCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig13.trna43 (304125-304049) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (304091-304089) Score: 87.30
HMM Sc=65.06 Sec struct Sc=22.24
* | * | * | * | * | * | * | *
Seq: GTGCCTGTAGCTCAATTGGAtAGAGCCCTGGACTCCGGATCCAGAGGtTGCGGGTTCAAATCCCGCCAGGCACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna44 (208831-208742) Length: 90 bp
Type: Leu Anticodon: TAA at 35-37 (208797-208795) Score: 80.98
HMM Sc=49.06 Sec struct Sc=31.92
* | * | * | * | * | * | * | * | *
Seq: GCCGGGGTGGCGGAATTGGGaGACGCAGCGGACTTAAAATCCGCTGGGGGTTACACCTCCGTGTCGGTTCGAGTCCGATCCCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna45 (208711-208635) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (208677-208675) Score: 83.33
HMM Sc=58.48 Sec struct Sc=24.85
* | * | * | * | * | * | * | *
Seq: TGCGGGGTGGAGCAGTCtGGCAGCTCGTTGGGCTCATAACCCAAAGGtCGCAGGTTCAAATCCTGCCCCCGCTACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig13.trna46 (119382-119307) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (119349-119347) Score: 87.88
HMM Sc=68.91 Sec struct Sc=18.97
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGCTCAGTTGGGAGAGCGCTACCTTCGCACGGTAGAGGcCGTGGGTTCAAATCCCATCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna47 (57874-57799) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (57841-57839) Score: 76.92
HMM Sc=57.94 Sec struct Sc=18.98
* | * | * | * | * | * | * | *
Seq: GGGGCCGTAGCTCAATTGGGAGAGCGCTACCATGGCACGGTAGAGGcAGTGGGTTCGAATCCCATCGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna48 (45625-45538) Length: 88 bp
Type: Leu Anticodon: GAG at 35-37 (45591-45589) Score: 64.60
HMM Sc=34.56 Sec struct Sc=30.04
* | * | * | * | * | * | * | * | *
Seq: GCCGAGGTGGTGGAATAGGCaGACACGCATGGTTGAGGGCCATGTGGGCATATAGCCCGTGCGGGTTCAAGTCCCGCCCTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>........<<..>>>>>.......<<<<<<<<<<<<....
Contig13.trna49 (22515-22438) Length: 78 bp
Type: Asp Anticodon: GTC at 36-38 (22480-22478) Score: 83.86
HMM Sc=60.94 Sec struct Sc=22.92
* | * | * | * | * | * | * | *
Seq: GGGGACGTGGTGAAGCTtGGTtATCACGCCGGTCTGTCACACCGGTGGcCGCGGGTTCAAATCCCGTCGTCCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig13.trna50 (22366-22289) Length: 78 bp
Type: Asp Anticodon: GTC at 36-38 (22331-22329) Score: 81.76
HMM Sc=58.84 Sec struct Sc=22.92
* | * | * | * | * | * | * | *
Seq: GGGGACGTGGTGAAGCCtGGTtATCACGCCGGTCTGTCACACCGGTGGcCGCGGGTTCAAATCCCGTCGTCCCCGCCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
SiteMap
Feedback
Life Sciences Division
ORNL
Disclaimer
Webmaster
![[space]](http://homer.ornl.gov/compbio/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}