Intracellular trafficking and secretion

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Biopolymer transport protein	U	Contig13	Tmel1295	COG0811	46	3e-06
Competence protein ComGC	U	Contig13	Tmel0536	COG4537	36	0.001
Competence protein ComGC	U	Contig13	Tmel0687	COG4537	37	7e-04

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar biosynthesis chaperone	U	Contig13	Tmel0887	COG2882	40	6e-05
Flagellar biosynthesis chaperone	U	Contig13	Tmel1703	COG2882	35	0.009
Flagellar biosynthesis pathway component FlhA	U	Contig13	Tmel1438	COG1298	771	0.0
Flagellar biosynthesis pathway component FlhB	U	Contig13	Tmel0849	COG1377	387	1.0e-109
Flagellar biosynthesis pathway component FlhB	U	Contig13	Tmel1547	COG1377	69	7e-14
Flagellar biosynthesis pathway component FliP	U	Contig13	Tmel0929	COG1338	247	7e-67
Flagellar biosynthesis pathway component FliQ	U	Contig13	Tmel0928	COG1987	69	7e-14
Flagellar biosynthesis pathway component FliR	U	Contig13	Tmel0850	COG1684	127	8e-31
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig13	Tmel0134	COG1157	37	0.005
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig13	Tmel0290	COG1157	250	1e-67
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig13	Tmel0292	COG1157	206	2e-54
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig13	Tmel1269	COG1157	617	1.0e-178
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig13	Tmel1393	COG1157	111	1e-25
Flagellar biosynthesis/type III secretory pathway lipoprotein	U	Contig13	Tmel0476	COG1766	282	5e-77
Flagellar biosynthesis/type III secretory pathway protein	U	Contig13	Tmel1270	COG1317	42	3e-05
Flagellar hook-basal body protein	U	Contig13	Tmel1126	COG1677	78	9e-17
Flagellar motor switch/type III secretory pathway protein	U	Contig13	Tmel1298	COG1886	42	8e-05
Flagellar motor switch/type III secretory pathway protein	U	Contig13	Tmel1299	COG1886	97	1e-21
Flagellin-specific chaperone FliS	U	Contig13	Tmel0557	COG1516	123	3e-30
Muramidase (flagellum-specific)	U	Contig13	Tmel1338	COG1705	43	2e-05
Predicted ATPase involved in biogenesis of flagella	U	Contig13	Tmel0023	COG2874	47	2e-06

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flp pilus assembly protein ATPase CpaE	U	Contig13	Tmel0012	COG4963	43	3e-05
Flp pilus assembly protein ATPase CpaE	U	Contig13	Tmel0396	COG4963	37	0.003
Flp pilus assembly protein ATPase CpaE	U	Contig13	Tmel0834	COG4963	46	3e-06
Flp pilus assembly protein ATPase CpaE	U	Contig13	Tmel1550	COG4963	66	2e-12
Flp pilus assembly protein ATPase CpaF	U	Contig13	Tmel1276	COG4962	57	3e-09
Flp pilus assembly protein ATPase CpaF	U	Contig13	Tmel1396	COG4962	75	6e-15
Flp pilus assembly protein secretin CpaC	U	Contig13	Tmel1256	COG4964	56	4e-09
Flp pilus assembly protein secretin CpaC	U	Contig13	Tmel1743	COG4964	110	8e-25
Flp pilus assembly protein TadC	U	Contig13	Tmel1749	COG2064	36	0.006
Flp pilus assembly protein TadD contains TPR repeats	U	Contig13	Tmel0311	COG5010	39	8e-04
Flp pilus assembly protein TadD contains TPR repeats	U	Contig13	Tmel0745	COG5010	37	0.001
Flp pilus assembly protein TadD contains TPR repeats	U	Contig13	Tmel0811	COG5010	43	9e-06
Flp pilus assembly protein TadD contains TPR repeats	U	Contig13	Tmel1796	COG5010	51	1e-07
Hemolysin activation/secretion protein	U	Contig13	Tmel0916	COG2831	70	5e-13
Lipoprotein signal peptidase	U	Contig13	Tmel0988	COG0597	89	2e-19
Membrane protein implicated in regulation of membrane protease activity	U	Contig13	Tmel1329	COG1585	79	1e-16
Negative regulator of flagellin synthesis (anti-sigma28 factor)	U	Contig13	Tmel0326	COG2747	34	0.003
Periplasmic component of the Tol biopolymer transport system	U	Contig13	Tmel0904	COG0823	43	6e-05
Periplasmic component of the Tol biopolymer transport system	U	Contig13	Tmel1426	COG0823	44	2e-05
Periplasmic serine protease (ClpP class)	U	Contig13	Tmel0984	COG0616	49	4e-07
Phosphatidylinositol kinase and protein kinase of the PI-3 kinase family	U	Contig13	Tmel0319	COG5032	38	0.002
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig13	Tmel0368	COG0758	157	1e-39
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig13	Tmel1609	COG0758	260	6e-71
Preprotein translocase subunit Sec63	U	Contig13	Tmel0087	COG5407	64	2e-11

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	Contig13	Tmel0589	COG0653	906	0.0
Preprotein translocase subunit SecD	U	Contig13	Tmel0221	COG0342	42	1e-04
Preprotein translocase subunit SecD	U	Contig13	Tmel1018	COG0342	43	1e-04
Preprotein translocase subunit SecD	U	Contig13	Tmel1152	COG0342	37	0.006
Preprotein translocase subunit SecD	U	Contig13	Tmel1904	COG0342	85	8e-18
Preprotein translocase subunit SecD	U	Contig13	Tmel1905	COG0342	303	2e-83
Preprotein translocase subunit SecE	U	Contig13	Tmel0640	COG0690	41	1e-05
Preprotein translocase subunit SecF	U	Contig13	Tmel1904	COG0341	237	8e-64
Preprotein translocase subunit SecF	U	Contig13	Tmel1905	COG0341	86	6e-18
Preprotein translocase subunit SecY	U	Contig13	Tmel0973	COG0201	366	1.0e-102
Preprotein translocase subunit YajC	U	Contig13	Tmel1906	COG1862	92	1e-20
Preprotein translocase subunit YidC	U	Contig13	Tmel1631	COG0706	160	2e-40

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Protease subunit of ATP-dependent Clp protease	U	Contig13	Tmel0984	COG0740	301	2e-83
Signal peptidase I	U	Contig13	Tmel1799	COG0681	45	8e-06
Signal recognition particle GTPase	U	Contig13	Tmel0831	COG0552	37	0.005
Signal recognition particle GTPase	U	Contig13	Tmel1437	COG0552	113	2e-26
Signal recognition particle GTPase	U	Contig13	Tmel1437	COG0541	118	8e-28
Signal recognition particle GTPase	U	Contig13	Tmel1555	COG0552	366	1.0e-102
Signal recognition particle GTPase	U	Contig13	Tmel1555	COG0541	245	2e-66
Signal recognition particle GTPase	U	Contig13	Tmel1806	COG0552	229	2e-61
Signal recognition particle GTPase	U	Contig13	Tmel1806	COG0541	564	1.0e-162
Tfp pilus assembly protein ATPase PilM	U	Contig13	Tmel0464	COG4972	41	1e-04
Tfp pilus assembly protein ATPase PilM	U	Contig13	Tmel1919	COG4972	56	1e-08
Tfp pilus assembly protein ATPase PilU	U	Contig13	Tmel1276	COG5008	137	2e-33
Tfp pilus assembly protein ATPase PilU	U	Contig13	Tmel1396	COG5008	282	2e-77
Tfp pilus assembly protein FimT	U	Contig13	Tmel0536	COG4970	40	5e-05
Tfp pilus assembly protein FimT	U	Contig13	Tmel0687	COG4970	38	2e-04
Tfp pilus assembly protein FimT	U	Contig13	Tmel0897	COG4970	44	4e-06
Tfp pilus assembly protein major pilin PilA	U	Contig13	Tmel0536	COG4969	40	7e-05
Tfp pilus assembly protein major pilin PilA	U	Contig13	Tmel0687	COG4969	41	4e-05
Tfp pilus assembly protein PilE	U	Contig13	Tmel0536	COG4968	43	9e-06
Tfp pilus assembly protein PilE	U	Contig13	Tmel0687	COG4968	48	2e-07
Tfp pilus assembly protein PilE	U	Contig13	Tmel0897	COG4968	42	2e-05
Tfp pilus assembly protein PilF	U	Contig13	Tmel0311	COG3063	49	7e-07
Tfp pilus assembly protein PilF	U	Contig13	Tmel0580	COG3063	38	8e-04
Tfp pilus assembly protein PilF	U	Contig13	Tmel0745	COG3063	38	7e-04
Tfp pilus assembly protein PilF	U	Contig13	Tmel1263	COG3063	38	3e-04
Tfp pilus assembly protein PilF	U	Contig13	Tmel1796	COG3063	46	4e-06
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig13	Tmel1276	COG2805	196	4e-51
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig13	Tmel1396	COG2805	416	1.0e-117
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig13	Tmel1437	COG2805	40	3e-04
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig13	Tmel1815	COG2805	37	0.003
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig13	Tmel1847	COG2805	36	0.009
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig13	Tmel1900	COG2805	36	0.003
Type III secretory pathway component EscR	U	Contig13	Tmel0929	COG4790	147	9e-37
Type III secretory pathway component EscS	U	Contig13	Tmel0928	COG4794	47	3e-07
Type III secretory pathway component EscT	U	Contig13	Tmel0850	COG4791	69	2e-13
Type III secretory pathway component EscU	U	Contig13	Tmel0849	COG4792	245	3e-66
Type III secretory pathway component EscU	U	Contig13	Tmel1547	COG4792	38	1e-04
Type III secretory pathway component EscV	U	Contig13	Tmel1438	COG4789	505	1.0e-144
Type III secretory pathway lipoprotein EscJ	U	Contig13	Tmel0476	COG4669	48	1e-06
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig13	Tmel1276	COG2804	525	1.0e-150
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig13	Tmel1396	COG2804	177	9e-46
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig13	Tmel1750	COG2804	35	0.004
Type II secretory pathway component ExeA (predicted ATPase)	U	Contig13	Tmel1397	COG3267	36	0.005
Type II secretory pathway component HofQ	U	Contig13	Tmel1256	COG4796	74	2e-14
Type II secretory pathway component HofQ	U	Contig13	Tmel1743	COG4796	115	3e-26
Type II secretory pathway component PulD	U	Contig13	Tmel1255	COG1450	36	0.004
Type II secretory pathway component PulD	U	Contig13	Tmel1256	COG1450	74	2e-14
Type II secretory pathway component PulD	U	Contig13	Tmel1743	COG1450	137	7e-33
Type II secretory pathway component PulF	U	Contig13	Tmel1749	COG1459	292	4e-80
Type II secretory pathway component PulJ	U	Contig13	Tmel0897	COG4795	39	1e-04
Type II secretory pathway component PulK	U	Contig13	Tmel1741	COG3156	38	5e-04
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	U	Contig13	Tmel1795	COG1989	58	6e-10
Type II secretory pathway pseudopilin PulG	U	Contig13	Tmel0443	COG2165	33	0.007
Type II secretory pathway pseudopilin PulG	U	Contig13	Tmel0536	COG2165	45	1e-06
Type II secretory pathway pseudopilin PulG	U	Contig13	Tmel0687	COG2165	50	4e-08
Type II secretory pathway pseudopilin PulG	U	Contig13	Tmel0897	COG2165	37	0.001
Type II secretory pathway pseudopilin PulG	U	Contig13	Tmel0898	COG2165	37	0.002
Type II secretory pathway pseudopilin PulG	U	Contig13	Tmel1748	COG2165	33	0.007
Type IV secretory pathway protease TraF	U	Contig13	Tmel1799	COG4959	41	9e-05
Type IV secretory pathway VirB11 components and related ATPase involved in flagella biosynthesis	U	Contig13	Tmel0133	COG0630	44	4e-05
Type IV secretory pathway VirB11 components and related ATPase involved in flagella biosynthesis	U	Contig13	Tmel1276	COG0630	78	2e-15
Type IV secretory pathway VirB11 components and related ATPase involved in flagella biosynthesis	U	Contig13	Tmel1396	COG0630	68	9e-13
Type IV secretory pathway VirB11 components and related ATPase involved in flagella biosynthesis	U	Contig13	Tmel1750	COG0630	40	1e-04

SiteMap Feedback Life Sciences Division ORNL Disclaimer Webmaster