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DNA Replication, Recombination and Repair

COG Name Group Contig Gene COG ID Score Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig13 Tmel0438 COG0122 67 7e-13
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig13 Tmel0522 COG0122 60 2e-10
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig13 Tmel0911 COG0122 35 0.004
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig13 Tmel1811 COG0122 36 0.002
5'-3' exonuclease (including N-terminal domain of PolI) L Contig13 Tmel1917 COG0258 211 3e-55
Adenine specific DNA methylase Mod L Contig13 Tmel1480 COG2189 36 0.002
Adenine specific DNA methylase Mod L Contig13 Tmel1691 COG2189 105 9e-24
A/G-specific DNA glycosylase L Contig13 Tmel0438 COG1194 131 5e-32
A/G-specific DNA glycosylase L Contig13 Tmel0522 COG1194 52 3e-08
ATPase involved in DNA repair L Contig13 Tmel0017 COG0419 40 5e-04
ATPase involved in DNA repair L Contig13 Tmel0035 COG0419 39 2e-04
ATPase involved in DNA repair L Contig13 Tmel0046 COG0419 38 0.002
ATPase involved in DNA repair L Contig13 Tmel0124 COG0419 41 3e-04
ATPase involved in DNA repair L Contig13 Tmel0168 COG0419 50 1e-06
ATPase involved in DNA repair L Contig13 Tmel0319 COG0419 38 0.003
ATPase involved in DNA repair L Contig13 Tmel0322 COG0419 36 0.009
ATPase involved in DNA repair L Contig13 Tmel0328 COG0497 44 6e-05
ATPase involved in DNA repair L Contig13 Tmel0405 COG0497 40 6e-04
ATPase involved in DNA repair L Contig13 Tmel0405 COG0419 42 2e-04
ATPase involved in DNA repair L Contig13 Tmel0434 COG0419 38 6e-04
ATPase involved in DNA repair L Contig13 Tmel0468 COG0419 42 3e-05
ATPase involved in DNA repair L Contig13 Tmel0481 COG0419 52 2e-07
ATPase involved in DNA repair L Contig13 Tmel0537 COG0419 36 0.003
ATPase involved in DNA repair L Contig13 Tmel0561 COG0419 35 0.007
ATPase involved in DNA repair L Contig13 Tmel0568 COG0419 38 7e-04
ATPase involved in DNA repair L Contig13 Tmel0594 COG0419 44 6e-05
ATPase involved in DNA repair L Contig13 Tmel0602 COG0419 36 0.003
ATPase involved in DNA repair L Contig13 Tmel0659 COG0497 38 0.003
ATPase involved in DNA repair L Contig13 Tmel0659 COG0419 40 7e-04
ATPase involved in DNA repair L Contig13 Tmel0715 COG0419 41 1e-04
ATPase involved in DNA repair L Contig13 Tmel0831 COG0419 36 0.006
ATPase involved in DNA repair L Contig13 Tmel0840 COG0419 42 3e-05
ATPase involved in DNA repair L Contig13 Tmel0889 COG0497 54 4e-08
ATPase involved in DNA repair L Contig13 Tmel0889 COG0419 62 2e-10
ATPase involved in DNA repair L Contig13 Tmel1085 COG0497 46 1e-05
ATPase involved in DNA repair L Contig13 Tmel1085 COG0419 69 1e-12
ATPase involved in DNA repair L Contig13 Tmel1108 COG0419 37 0.004
ATPase involved in DNA repair L Contig13 Tmel1120 COG0497 41 3e-04
ATPase involved in DNA repair L Contig13 Tmel1120 COG0419 44 4e-05
ATPase involved in DNA repair L Contig13 Tmel1160 COG0419 37 0.004
ATPase involved in DNA repair L Contig13 Tmel1355 COG0419 37 0.002
ATPase involved in DNA repair L Contig13 Tmel1382 COG0419 37 0.003
ATPase involved in DNA repair L Contig13 Tmel1384 COG0419 37 0.002
ATPase involved in DNA repair L Contig13 Tmel1385 COG0419 40 2e-04
ATPase involved in DNA repair L Contig13 Tmel1509 COG0497 270 2e-73
ATPase involved in DNA repair L Contig13 Tmel1509 COG0419 47 5e-06
ATPase involved in DNA repair L Contig13 Tmel1533 COG0497 37 0.004
ATPase involved in DNA repair L Contig13 Tmel1533 COG0419 36 0.005
ATPase involved in DNA repair L Contig13 Tmel1579 COG0497 40 4e-04
ATPase involved in DNA repair L Contig13 Tmel1579 COG0419 38 0.001
ATPase involved in DNA repair L Contig13 Tmel1688 COG0419 46 6e-06
ATPase involved in DNA repair L Contig13 Tmel1702 COG0419 39 4e-04
ATPase involved in DNA repair L Contig13 Tmel1703 COG0419 38 0.002
ATPase involved in DNA repair L Contig13 Tmel1716 COG0419 39 5e-04
ATPase involved in DNA repair L Contig13 Tmel1733 COG0419 35 0.008
ATPase involved in DNA repair L Contig13 Tmel1750 COG0419 48 7e-07
ATPase involved in DNA repair L Contig13 Tmel1776 COG0497 41 3e-04
ATPase involved in DNA repair L Contig13 Tmel1776 COG0419 44 4e-05
ATPase involved in DNA repair L Contig13 Tmel1826 COG0419 37 0.001
ATPase involved in DNA repair L Contig13 Tmel1900 COG0419 37 0.001
ATPase involved in DNA repair L Contig13 Tmel1920 COG0419 39 0.001
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel0024 COG2256 42 2e-04
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel0079 COG2256 42 1e-04
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel0154 COG2256 429 1.0e-121
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel0206 COG2256 53 7e-08
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel0413 COG2256 43 9e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel0597 COG2256 42 2e-04
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel0626 COG2256 43 6e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel0941 COG2256 50 2e-07
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel1397 COG2256 110 2e-25
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel1493 COG2256 42 2e-04
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel1538 COG2256 90 3e-19
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig13 Tmel1615 COG2256 36 0.008
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig13 Tmel0419 COG1074 253 6e-68
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig13 Tmel0779 COG1074 166 3e-42
ATP-dependent nuclease subunit B L Contig13 Tmel0420 COG3857 58 4e-09
Bacterial nucleoid DNA-binding protein L Contig13 Tmel0429 COG0776 99 5e-23

BASAL REPLICATION MACHINERY

COG Name Group Contig Gene COG ID Score Evalue
ATPase involved in DNA replication L Contig13 Tmel1397 COG0470 51 2e-07
ATPase involved in DNA replication initiation L Contig13 Tmel0001 COG0593 316 1e-87
ATPase involved in DNA replication initiation L Contig13 Tmel0079 COG0593 37 0.003
ATPase involved in DNA replication initiation L Contig13 Tmel0154 COG0593 38 0.001
ATPase involved in DNA replication initiation L Contig13 Tmel0206 COG0593 40 4e-04
ATPase involved in DNA replication initiation L Contig13 Tmel1397 COG0593 36 0.006
ATPase involved in DNA replication initiation L Contig13 Tmel1538 COG0593 55 7e-09
DNA polymerase I - 3'-5' exonuclease and polymerase domains L Contig13 Tmel1917 COG0749 641 0.0
DNA primase L Contig13 Tmel1030 COG0358 305 6e-84
DNA replication protein L Contig13 Tmel0001 COG1484 64 2e-11
DNA replication protein L Contig13 Tmel0206 COG1484 36 0.008
DNA replication protein L Contig13 Tmel0597 COG1484 37 0.007
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig13 Tmel1511 COG0272 839 0.0
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig13 Tmel1736 COG0272 40 4e-04
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig13 Tmel1741 COG0272 50 8e-08
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig13 Tmel0034 COG1198 72 2e-13
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig13 Tmel0276 COG1198 503 1.0e-143
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig13 Tmel0901 COG1198 36 0.008
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig13 Tmel1847 COG1198 45 1e-05
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig13 Tmel1855 COG1198 96 1e-20
Replicative DNA helicase L Contig13 Tmel0023 COG0305 43 4e-05
Replicative DNA helicase L Contig13 Tmel0517 COG0305 491 1.0e-140
Ribonuclease HI L Contig13 Tmel0717 COG0328 67 8e-13
Ribonuclease HI L Contig13 Tmel1677 COG0328 55 2e-09
Ribonuclease HII L Contig13 Tmel1910 COG0164 196 1e-51
Ribonuclease HIII L Contig13 Tmel1910 COG1039 45 3e-06
Single-stranded DNA-binding protein L Contig13 Tmel0637 COG0629 92 2e-20
Topoisomerase IA L Contig13 Tmel1024 COG0550 533 1.0e-152
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit L Contig13 Tmel1160 COG0188 39 6e-04
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit L Contig13 Tmel1186 COG0188 891 0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit L Contig13 Tmel0671 COG0187 929 0.0
COG Name Group Contig Gene COG ID Score Evalue
Cdc6-related protein AAA superfamily ATPase L Contig13 Tmel0154 COG1474 44 2e-05
Cdc6-related protein AAA superfamily ATPase L Contig13 Tmel0206 COG1474 39 9e-04
Cdc6-related protein AAA superfamily ATPase L Contig13 Tmel0597 COG1474 41 2e-04
Cdc6-related protein AAA superfamily ATPase L Contig13 Tmel0626 COG1474 36 0.004
Cdc6-related protein AAA superfamily ATPase L Contig13 Tmel1093 COG1474 42 8e-05
Cdc6-related protein AAA superfamily ATPase L Contig13 Tmel1397 COG1474 37 0.003
Cdc6-related protein AAA superfamily ATPase L Contig13 Tmel1492 COG1474 33 0.009
Deoxyinosine 3'endonuclease (endonuclease V) L Contig13 Tmel1562 COG1515 222 2e-59
DNA mismatch repair enzyme (predicted ATPase) L Contig13 Tmel0769 COG0323 389 1.0e-109
DNA mismatch repair enzyme (predicted ATPase) L Contig13 Tmel0915 COG0323 38 5e-04
DNA mismatch repair enzyme (predicted ATPase) L Contig13 Tmel1823 COG0323 40 2e-04
DNA modification methylase L Contig13 Tmel0306 COG0863 42 5e-05
DNA modification methylase L Contig13 Tmel1480 COG0863 133 1e-32
DNA modification methylase L Contig13 Tmel1691 COG0863 42 2e-04
DNA or RNA helicase of superfamily II L Contig13 Tmel0034 COG1061 60 6e-10
DNA or RNA helicase of superfamily II L Contig13 Tmel0276 COG1061 64 3e-11
DNA or RNA helicase of superfamily II L Contig13 Tmel0351 COG1061 41 2e-04
DNA or RNA helicase of superfamily II L Contig13 Tmel0367 COG1061 47 9e-06
DNA or RNA helicase of superfamily II L Contig13 Tmel0838 COG1061 64 2e-11
DNA or RNA helicase of superfamily II L Contig13 Tmel1686 COG1061 194 1e-50
DNA or RNA helicase of superfamily II L Contig13 Tmel1692 COG1061 46 1e-05
DNA or RNA helicase of superfamily II L Contig13 Tmel1847 COG1061 64 4e-11
DNA or RNA helicase of superfamily II L Contig13 Tmel1855 COG1061 57 8e-09

DNA POLYMERASE III SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
DNA polymerase III alpha subunit L Contig13 Tmel0662 COG0587 34 0.007
DNA polymerase III alpha subunit L Contig13 Tmel1025 COG0587 37 0.002
DNA polymerase III alpha subunit L Contig13 Tmel1039 COG0587 262 2e-70
DNA polymerase III alpha subunit L Contig13 Tmel1524 COG0587 431 1.0e-121
DNA polymerase III alpha subunit (gram-positive type) L Contig13 Tmel0478 COG2176 126 8e-31
DNA polymerase III alpha subunit (gram-positive type) L Contig13 Tmel0889 COG2176 37 0.009
DNA polymerase III alpha subunit (gram-positive type) L Contig13 Tmel1039 COG2176 1463 0.0
DNA polymerase III alpha subunit (gram-positive type) L Contig13 Tmel1524 COG2176 61 3e-10
DNA polymerase III alpha subunit (gram-positive type) L Contig13 Tmel1741 COG2176 38 6e-04
DNA polymerase III delta subunit L Contig13 Tmel1151 COG1466 72 6e-14
DNA polymerase III delta subunit L Contig13 Tmel1397 COG1466 42 1e-04
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L Contig13 Tmel0478 COG0847 114 5e-27
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L Contig13 Tmel1039 COG0847 138 3e-33
DNA polymerase III gamma/tau subunits L Contig13 Tmel0154 COG2812 84 2e-17
DNA polymerase III gamma/tau subunits L Contig13 Tmel0626 COG2812 37 0.002
DNA polymerase III gamma/tau subunits L Contig13 Tmel1397 COG2812 343 1e-95
DNA polymerase III gamma/tau subunits L Contig13 Tmel1538 COG2812 42 5e-05
DNA polymerase III gamma/tau subunits L Contig13 Tmel1899 COG2812 69 2e-13
DNA polymerase sliding clamp subunit (PCNA homolog) L Contig13 Tmel0535 COG0592 207 7e-55
COG Name Group Contig Gene COG ID Score Evalue
DNA repair exonuclease L Contig13 Tmel1083 COG0420 56 5e-09
DNA repair photolyase L Contig13 Tmel0179 COG1533 38 0.001
DNA repair protein L Contig13 Tmel0215 COG2003 210 6e-56
DNA topoisomerase VI subunit B L Contig13 Tmel0671 COG1389 39 0.001
DNA topoisomerase VI subunit B L Contig13 Tmel0769 COG1389 38 0.002
DNA topoisomerase VI subunit B L Contig13 Tmel1496 COG1389 39 7e-04
DNA topoisomerase VI subunit B L Contig13 Tmel1823 COG1389 37 0.002
DNA topoisomerase VI subunit B L Contig13 Tmel1839 COG1389 37 0.003
DNA uptake protein and related DNA-binding protein L Contig13 Tmel0274 COG1555 48 3e-06
DNA uptake protein and related DNA-binding protein L Contig13 Tmel1741 COG1555 84 8e-18
Endonuclease IV L Contig13 Tmel1402 COG0648 267 6e-73
ERCC4-like helicase L Contig13 Tmel0034 COG1111 44 4e-05
ERCC4-like helicase L Contig13 Tmel0276 COG1111 44 4e-05
ERCC4-like helicase L Contig13 Tmel0838 COG1111 50 3e-07
ERCC4-like helicase L Contig13 Tmel1686 COG1111 60 8e-10
ERCC4-like helicase L Contig13 Tmel1847 COG1111 62 1e-10
ERCC4-like helicase L Contig13 Tmel1855 COG1111 48 3e-06
ERCC4-type nuclease L Contig13 Tmel1511 COG1948 37 0.006
ERCC4-type nuclease L Contig13 Tmel1736 COG1948 38 0.002
ERCC4-type nuclease L Contig13 Tmel1741 COG1948 36 0.002
Excinuclease ATPase subunit L Contig13 Tmel0017 COG0178 62 7e-11
Excinuclease ATPase subunit L Contig13 Tmel0035 COG0178 47 1e-06
Excinuclease ATPase subunit L Contig13 Tmel0051 COG0178 37 0.002
Excinuclease ATPase subunit L Contig13 Tmel0124 COG0178 53 6e-08
Excinuclease ATPase subunit L Contig13 Tmel0133 COG0178 37 0.004
Excinuclease ATPase subunit L Contig13 Tmel0134 COG0178 41 2e-04
Excinuclease ATPase subunit L Contig13 Tmel0151 COG0178 52 4e-08
Excinuclease ATPase subunit L Contig13 Tmel0168 COG0178 1379 0.0
Excinuclease ATPase subunit L Contig13 Tmel0406 COG0178 37 8e-04
Excinuclease ATPase subunit L Contig13 Tmel0434 COG0178 50 2e-07
Excinuclease ATPase subunit L Contig13 Tmel0468 COG0178 63 1e-11
Excinuclease ATPase subunit L Contig13 Tmel0537 COG0178 39 4e-04
Excinuclease ATPase subunit L Contig13 Tmel0560 COG0178 41 1e-04
Excinuclease ATPase subunit L Contig13 Tmel0561 COG0178 37 0.002
Excinuclease ATPase subunit L Contig13 Tmel0568 COG0178 56 6e-09
Excinuclease ATPase subunit L Contig13 Tmel0602 COG0178 44 9e-06
Excinuclease ATPase subunit L Contig13 Tmel0715 COG0178 36 0.002
Excinuclease ATPase subunit L Contig13 Tmel0740 COG0178 36 0.003
Excinuclease ATPase subunit L Contig13 Tmel0831 COG0178 45 2e-05
Excinuclease ATPase subunit L Contig13 Tmel0840 COG0178 47 8e-07
Excinuclease ATPase subunit L Contig13 Tmel0876 COG0178 43 1e-05
Excinuclease ATPase subunit L Contig13 Tmel1132 COG0178 39 4e-04
Excinuclease ATPase subunit L Contig13 Tmel1161 COG0178 41 1e-04
Excinuclease ATPase subunit L Contig13 Tmel1191 COG0178 52 6e-08
Excinuclease ATPase subunit L Contig13 Tmel1310 COG0178 55 5e-09
Excinuclease ATPase subunit L Contig13 Tmel1382 COG0178 50 5e-07
Excinuclease ATPase subunit L Contig13 Tmel1384 COG0178 39 7e-04
Excinuclease ATPase subunit L Contig13 Tmel1385 COG0178 49 3e-07
Excinuclease ATPase subunit L Contig13 Tmel1648 COG0178 35 0.005
Excinuclease ATPase subunit L Contig13 Tmel1702 COG0178 47 2e-06
Excinuclease ATPase subunit L Contig13 Tmel1716 COG0178 50 3e-07
Excinuclease ATPase subunit L Contig13 Tmel1732 COG0178 44 2e-05
Excinuclease ATPase subunit L Contig13 Tmel1733 COG0178 44 1e-05
Excinuclease ATPase subunit L Contig13 Tmel1750 COG0178 56 2e-09
Excinuclease ATPase subunit L Contig13 Tmel1826 COG0178 56 3e-09
Exonuclease VII large subunit L Contig13 Tmel1916 COG1570 158 9e-40
Helicase subunit of the DNA excision repair complex L Contig13 Tmel0034 COG0556 37 0.004
Helicase subunit of the DNA excision repair complex L Contig13 Tmel0276 COG0556 53 8e-08
Helicase subunit of the DNA excision repair complex L Contig13 Tmel1686 COG0556 51 2e-07
Helicase subunit of the DNA excision repair complex L Contig13 Tmel1847 COG0556 955 0.0
Helicase subunit of the DNA excision repair complex L Contig13 Tmel1855 COG0556 62 2e-10
Holliday junction resolvasome DNA-binding subunit L Contig13 Tmel0911 COG0632 145 2e-36
Holliday junction resolvasome DNA-binding subunit L Contig13 Tmel1741 COG0632 34 0.008
Holliday junction resolvasome endonuclease subunit L Contig13 Tmel1038 COG0817 195 1e-51
Holliday junction resolvasome helicase subunit L Contig13 Tmel0154 COG2255 83 5e-17
Holliday junction resolvasome helicase subunit L Contig13 Tmel0206 COG2255 44 4e-05
Holliday junction resolvasome helicase subunit L Contig13 Tmel0626 COG2255 37 0.003
Holliday junction resolvasome helicase subunit L Contig13 Tmel0941 COG2255 36 0.003
Holliday junction resolvasome helicase subunit L Contig13 Tmel1301 COG2255 37 0.002
Holliday junction resolvasome helicase subunit L Contig13 Tmel1397 COG2255 65 9e-12
Holliday junction resolvasome helicase subunit L Contig13 Tmel1493 COG2255 36 0.009
Holliday junction resolvasome helicase subunit L Contig13 Tmel1538 COG2255 452 1.0e-128
HrpA-like helicase L Contig13 Tmel0838 COG1643 64 3e-11
HrpA-like helicase L Contig13 Tmel1855 COG1643 41 3e-04
Integrase L Contig13 Tmel0169 COG0582 53 3e-08
Mg-dependent DNase L Contig13 Tmel0910 COG0084 274 3e-75
Micrococcal nuclease (thermonuclease) homologs L Contig13 Tmel0612 COG1525 43 2e-05
Micrococcal nuclease (thermonuclease) homologs L Contig13 Tmel0613 COG1525 41 2e-05
Mismatch repair ATPase (MutS family) L Contig13 Tmel0195 COG1193 119 4e-28
Mismatch repair ATPase (MutS family) L Contig13 Tmel0195 COG0249 122 7e-29
Mismatch repair ATPase (MutS family) L Contig13 Tmel0294 COG1193 35 0.003
Mismatch repair ATPase (MutS family) L Contig13 Tmel0860 COG1193 36 0.004
Mismatch repair ATPase (MutS family) L Contig13 Tmel1001 COG1193 139 6e-34
Mismatch repair ATPase (MutS family) L Contig13 Tmel1001 COG0249 802 0.0
Mismatch repair ATPase (MutS family) L Contig13 Tmel1920 COG1193 471 1.0e-134
Mismatch repair ATPase (MutS family) L Contig13 Tmel1920 COG0249 146 7e-36
N6-adenine-specific methylase L Contig13 Tmel0187 COG0742 47 1e-06
N6-adenine-specific methylase L Contig13 Tmel0330 COG0742 37 0.001
N6-adenine-specific methylase L Contig13 Tmel0565 COG0742 150 9e-38
N6-adenine-specific methylase L Contig13 Tmel0700 COG0742 45 4e-06
N6-adenine-specific methylase L Contig13 Tmel1544 COG0742 41 1e-04
N6-adenine-specific methylase L Contig13 Tmel1889 COG0742 50 3e-07
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig13 Tmel0555 COG2816 37 0.001
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig13 Tmel0623 COG2816 46 1e-06
NTP pyrophosphohydrolase including oxidative damage repair enzymes L Contig13 Tmel0555 COG0494 57 6e-10
NTP pyrophosphohydrolase including oxidative damage repair enzymes L Contig13 Tmel0623 COG0494 44 5e-06
NTP pyrophosphohydrolase including oxidative damage repair enzymes L Contig13 Tmel1891 COG0494 36 0.002
Nuclease subunit of the excinuclease complex L Contig13 Tmel1511 COG0322 36 0.007
Nuclease subunit of the excinuclease complex L Contig13 Tmel1736 COG0322 397 1.0e-111
Nuclease subunit of the excinuclease complex L Contig13 Tmel1847 COG0322 36 0.009
Nucleosome binding factor SPN SPT16 subunit L Contig13 Tmel0299 COG5406 52 9e-08
Nucleosome binding factor SPN SPT16 subunit L Contig13 Tmel0975 COG5406 47 1e-06
Phage-related protein predicted endonuclease L Contig13 Tmel1473 COG5377 292 3e-80
Phosphatidylinositol kinase and protein kinase of the PI-3 kinase family L Contig13 Tmel0319 COG5032 38 0.002
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig13 Tmel0277 COG1241 32 0.008
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig13 Tmel0941 COG1241 47 2e-06
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig13 Tmel1538 COG1241 38 0.001
Predicted ATP-dependent endonuclease of the OLD family L Contig13 Tmel0481 COG3593 41 3e-04
Predicted ATP-dependent endonuclease of the OLD family L Contig13 Tmel1087 COG3593 63 7e-11
Predicted DNA alkylation repair enzyme L Contig13 Tmel1710 COG4912 87 1e-18
Predicted DNA modification methylase L Contig13 Tmel0180 COG1041 55 8e-09
Predicted DNA modification methylase L Contig13 Tmel0225 COG1041 38 8e-04
Predicted DNA modification methylase L Contig13 Tmel0306 COG1041 66 3e-12
Predicted DNA modification methylase L Contig13 Tmel0405 COG1041 37 0.004
Predicted DNA modification methylase L Contig13 Tmel1421 COG1041 38 7e-04
Predicted DNA modification methylase L Contig13 Tmel1480 COG1041 40 2e-04
Predicted EndoIII-related endonuclease L Contig13 Tmel0438 COG0177 265 2e-72
Predicted EndoIII-related endonuclease L Contig13 Tmel0522 COG0177 115 2e-27
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) L Contig13 Tmel0300 COG0816 72 2e-14
Predicted exonuclease L Contig13 Tmel0518 COG3359 49 7e-07
Predicted N6-adenine-specific DNA methylase L Contig13 Tmel0180 COG0116 235 3e-63
Predicted N6-adenine-specific DNA methylase L Contig13 Tmel0306 COG0116 45 5e-06
Predicted N6-adenine-specific DNA methylase L Contig13 Tmel0565 COG0116 38 5e-04
Predicted N6-adenine-specific DNA methylase L Contig13 Tmel1421 COG0116 40 2e-04
Predicted polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain L Contig13 Tmel0657 COG1315 166 4e-42
Predicted polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain L Contig13 Tmel1534 COG1315 239 5e-64
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake L Contig13 Tmel0368 COG0758 157 1e-39
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake L Contig13 Tmel1609 COG0758 260 6e-71
Predicted site-specific integrase-resolvase L Contig13 Tmel1486 COG2452 36 0.005
Rad3-related DNA helicase L Contig13 Tmel0838 COG1199 41 2e-04
Rad3-related DNA helicase L Contig13 Tmel0901 COG1199 39 0.001
RecA-family ATPase L Contig13 Tmel0023 COG3598 42 7e-05
RecA/RadA recombinase L Contig13 Tmel0023 COG0468 68 2e-12
RecA/RadA recombinase L Contig13 Tmel1158 COG0468 291 4e-80
RecB family exonuclease L Contig13 Tmel0349 COG1468 90 8e-20
RecG-like helicase L Contig13 Tmel0034 COG1200 763 0.0
RecG-like helicase L Contig13 Tmel0276 COG1200 64 3e-11
RecG-like helicase L Contig13 Tmel0367 COG1200 40 0.001
RecG-like helicase L Contig13 Tmel0838 COG1200 63 6e-11
RecG-like helicase L Contig13 Tmel1686 COG1200 39 0.002
RecG-like helicase L Contig13 Tmel1847 COG1200 44 3e-05
RecG-like helicase L Contig13 Tmel1855 COG1200 354 1e-98
RecJ-like exonuclease contains DnaJ-type Zn finger domain L Contig13 Tmel0087 COG1107 39 5e-04
RecJ-like exonuclease contains DnaJ-type Zn finger domain L Contig13 Tmel0274 COG1107 36 0.007
RecJ-like exonuclease contains DnaJ-type Zn finger domain L Contig13 Tmel1612 COG1107 43 8e-05
Recombinational DNA repair ATPase (RecF pathway) L Contig13 Tmel0481 COG1195 43 7e-05
Recombinational DNA repair ATPase (RecF pathway) L Contig13 Tmel0568 COG1195 38 0.001
Recombinational DNA repair ATPase (RecF pathway) L Contig13 Tmel0889 COG1195 48 3e-06
Recombinational DNA repair ATPase (RecF pathway) L Contig13 Tmel1087 COG1195 41 3e-04
Recombinational DNA repair ATPase (RecF pathway) L Contig13 Tmel1509 COG1195 36 0.007
Recombinational DNA repair ATPase (RecF pathway) L Contig13 Tmel1688 COG1195 38 0.002
Recombinational DNA repair ATPase (RecF pathway) L Contig13 Tmel1750 COG1195 34 0.007
Recombinational DNA repair protein (RecE pathway) L Contig13 Tmel1472 COG3723 190 1e-49
Recombinational DNA repair protein (RecF pathway) L Contig13 Tmel0911 COG0353 34 0.009
Recombinational DNA repair protein (RecF pathway) L Contig13 Tmel1006 COG0353 36 0.003
Reverse gyrase L Contig13 Tmel0034 COG1110 45 2e-05
Reverse gyrase L Contig13 Tmel0276 COG1110 46 8e-06
Reverse gyrase L Contig13 Tmel0351 COG1110 38 0.003
Reverse gyrase L Contig13 Tmel0838 COG1110 45 2e-05
Reverse gyrase L Contig13 Tmel0901 COG1110 37 0.004
Reverse gyrase L Contig13 Tmel1024 COG1110 314 9e-87
Reverse gyrase L Contig13 Tmel1847 COG1110 43 6e-05
Reverse gyrase L Contig13 Tmel1855 COG1110 46 9e-06
Single-stranded DNA-specific exonuclease L Contig13 Tmel0301 COG0608 328 9e-91
Single-stranded DNA-specific exonuclease L Contig13 Tmel1527 COG0608 44 2e-05
Site-specific DNA methylase L Contig13 Tmel0308 COG0338 200 1e-52
Site-specific recombinase DNA invertase Pin homologs L Contig13 Tmel0397 COG1961 86 7e-18
Site-specific recombinase DNA invertase Pin homologs L Contig13 Tmel1486 COG1961 89 6e-19
Site-specific recombinase XerC L Contig13 Tmel0169 COG4973 152 3e-38
Site-specific recombinase XerD L Contig13 Tmel0169 COG4974 225 3e-60
Superfamily I DNA and RNA helicase and helicase subunits L Contig13 Tmel0901 COG1112 290 2e-79
Superfamily I DNA and RNA helicase L Contig13 Tmel0419 COG0210 187 3e-48
Superfamily I DNA and RNA helicase L Contig13 Tmel0779 COG0210 400 1.0e-112
Superfamily I DNA and RNA helicase L Contig13 Tmel0901 COG0210 45 2e-05
Superfamily II DNA and RNA helicase L Contig13 Tmel0034 COG0513 76 8e-15
Superfamily II DNA and RNA helicase L Contig13 Tmel0276 COG0513 41 5e-04
Superfamily II DNA and RNA helicase L Contig13 Tmel0367 COG0513 72 2e-13
Superfamily II DNA and RNA helicase L Contig13 Tmel0589 COG0513 39 0.002
Superfamily II DNA and RNA helicase L Contig13 Tmel0838 COG0513 390 1.0e-109
Superfamily II DNA and RNA helicase L Contig13 Tmel1686 COG0513 60 6e-10
Superfamily II DNA and RNA helicase L Contig13 Tmel1847 COG0513 73 7e-14
Superfamily II DNA and RNA helicase L Contig13 Tmel1855 COG0513 78 4e-15
Superfamily II DNA helicase L Contig13 Tmel0034 COG0514 79 9e-16
Superfamily II DNA helicase L Contig13 Tmel0276 COG0514 45 2e-05
Superfamily II DNA helicase L Contig13 Tmel0367 COG0514 326 8e-90
Superfamily II DNA helicase L Contig13 Tmel0589 COG0514 46 1e-05
Superfamily II DNA helicase L Contig13 Tmel0838 COG0514 113 3e-26
Superfamily II DNA helicase L Contig13 Tmel1686 COG0514 44 3e-05
Superfamily II DNA helicase L Contig13 Tmel1847 COG0514 63 7e-11
Superfamily II DNA helicase L Contig13 Tmel1855 COG0514 63 7e-11
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig13 Tmel0034 COG4098 63 8e-11
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig13 Tmel0276 COG4098 45 1e-05
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig13 Tmel0351 COG4098 38 0.002
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig13 Tmel0838 COG4098 36 0.004
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig13 Tmel1847 COG4098 60 5e-10
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig13 Tmel1855 COG4098 92 2e-19
Superfamily II RNA helicase L Contig13 Tmel0034 COG4581 36 0.009
Thermostable 8-oxoguanine DNA glycosylase L Contig13 Tmel0522 COG1059 36 0.002
Thermostable 8-oxoguanine DNA glycosylase L Contig13 Tmel1811 COG1059 210 5e-56
Transcription-repair coupling factor (superfamily II helicase) L Contig13 Tmel0034 COG1197 354 1e-98
Transcription-repair coupling factor (superfamily II helicase) L Contig13 Tmel0276 COG1197 40 5e-04
Transcription-repair coupling factor (superfamily II helicase) L Contig13 Tmel0755 COG1197 35 0.008
Transcription-repair coupling factor (superfamily II helicase) L Contig13 Tmel0838 COG1197 39 9e-04
Transcription-repair coupling factor (superfamily II helicase) L Contig13 Tmel1847 COG1197 145 7e-36
Transcription-repair coupling factor (superfamily II helicase) L Contig13 Tmel1855 COG1197 754 0.0
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel0347 COG1343 70 5e-14
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel0348 COG1518 292 2e-80
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel0353 COG3649 59 6e-10
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel1650 COG1343 64 2e-12
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel1651 COG1518 246 1e-66
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel1652 COG1343 63 4e-12
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel1661 COG3337 38 2e-04
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel1669 COG1517 69 8e-13
Uncharacterized protein predicted to be involved in DNA repair L Contig13 Tmel1671 COG1421 38 3e-04
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel0355 COG1583 101 4e-23
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1657 COG1367 102 6e-23
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1659 COG1769 117 2e-27
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1660 COG1336 190 1e-49
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1662 COG1604 140 8e-35
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1662 COG1336 43 3e-05
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1672 COG1337 176 2e-45
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1672 COG1604 36 0.003
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1672 COG1336 38 5e-04
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1672 COG1567 38 6e-04
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1673 COG1567 132 4e-32
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1674 COG1332 81 1e-16
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) L Contig13 Tmel1676 COG1583 102 2e-23
Uncharacterized protein related to Endonuclease III L Contig13 Tmel0438 COG2231 100 7e-23
Uncharacterized protein related to Endonuclease III L Contig13 Tmel0522 COG2231 211 3e-56
Uncharacterized protein related to Endonuclease III L Contig13 Tmel1811 COG2231 34 0.009
Uracil-DNA glycosylase L Contig13 Tmel0157 COG1573 182 2e-47
UV damage repair endonuclease L Contig13 Tmel1402 COG4294 35 0.008
Zn-finger domain associated with topoisomerase type I L Contig13 Tmel1024 COG0551 43 6e-05

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