Transcription

BASAL TRANSCRIPTION FACTORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig13	Tmel0398	COG1813	45	4e-06
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig13	Tmel0572	COG1813	35	0.002
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig13	Tmel1478	COG1813	39	6e-05
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig13	Tmel1479	COG1813	47	1e-06
Transcription antiterminator	K	Contig13	Tmel0641	COG0250	116	2e-27
Transcription elongation factor	K	Contig13	Tmel1377	COG0782	140	5e-35
Transcription elongation factor	K	Contig13	Tmel1412	COG0195	149	2e-37
Transcription termination factor	K	Contig13	Tmel0290	COG1158	41	1e-04
Transcription termination factor	K	Contig13	Tmel0292	COG1158	38	0.002
Transcription termination factor	K	Contig13	Tmel0847	COG0781	130	3e-32
Transcription termination factor	K	Contig13	Tmel1269	COG1158	79	5e-16
Transcription termination factor	K	Contig13	Tmel1393	COG1158	626	0.0
Transcription termination factor	K	Contig13	Tmel1514	COG0781	61	2e-10

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Biotin operon repressor	K	Contig13	Tmel0091	COG1654	37	6e-04
Cold shock protein	K	Contig13	Tmel0278	COG1278	98	1e-22
DNA-binding winged-HTH domains	K	Contig13	Tmel1516	COG3710	61	6e-11
DNA-binding winged-HTH domains	K	Contig13	Tmel1824	COG3710	66	3e-12
DNA-binding winged-HTH domains	K	Contig13	Tmel1838	COG3710	72	6e-14

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit	K	Contig13	Tmel0981	COG0202	256	1e-69
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	Contig13	Tmel0502	COG0085	1164	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	Contig13	Tmel0501	COG0086	619	1.0e-178
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig13	Tmel0041	COG0568	39	2e-04
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig13	Tmel1029	COG0568	302	2e-83
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig13	Tmel1431	COG0568	73	2e-14
DNA-directed RNA polymerase specialized sigma subunit	K	Contig13	Tmel0041	COG1191	46	2e-06
DNA-directed RNA polymerase specialized sigma subunit	K	Contig13	Tmel0777	COG1191	47	9e-07
DNA-directed RNA polymerase specialized sigma subunit	K	Contig13	Tmel1029	COG1191	126	3e-30
DNA-directed RNA polymerase specialized sigma subunit	K	Contig13	Tmel1431	COG1191	143	9e-36
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig13	Tmel0041	COG1595	56	2e-09
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig13	Tmel0777	COG1595	133	1e-32
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig13	Tmel1029	COG1595	36	0.005
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig13	Tmel1059	COG1595	34	0.004
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig13	Tmel1431	COG1595	47	8e-07
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig13	Tmel1467	COG1595	36	0.002
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig13	Tmel1666	COG1595	36	0.003
DNA-directed RNA polymerase subunit E'	K	Contig13	Tmel1513	COG1095	51	3e-07
DNA-directed RNA polymerase subunit K/omega	K	Contig13	Tmel0098	COG1758	46	4e-07

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA helicase TIP49 TBP-interacting protein	K	Contig13	Tmel0154	COG1224	40	3e-04
DNA helicase TIP49 TBP-interacting protein	K	Contig13	Tmel0206	COG1224	48	2e-06
DNA helicase TIP49 TBP-interacting protein	K	Contig13	Tmel1397	COG1224	49	8e-07
DNA helicase TIP49 TBP-interacting protein	K	Contig13	Tmel1538	COG1224	43	3e-05
DNA or RNA helicase of superfamily II	K	Contig13	Tmel0034	COG1061	60	6e-10
DNA or RNA helicase of superfamily II	K	Contig13	Tmel0276	COG1061	64	3e-11
DNA or RNA helicase of superfamily II	K	Contig13	Tmel0351	COG1061	41	2e-04
DNA or RNA helicase of superfamily II	K	Contig13	Tmel0367	COG1061	47	9e-06
DNA or RNA helicase of superfamily II	K	Contig13	Tmel0838	COG1061	64	2e-11
DNA or RNA helicase of superfamily II	K	Contig13	Tmel1686	COG1061	194	1e-50
DNA or RNA helicase of superfamily II	K	Contig13	Tmel1692	COG1061	46	1e-05
DNA or RNA helicase of superfamily II	K	Contig13	Tmel1847	COG1061	64	4e-11
DNA or RNA helicase of superfamily II	K	Contig13	Tmel1855	COG1061	57	8e-09
dsRNA-specific ribonuclease	K	Contig13	Tmel1604	COG0571	207	6e-55
Exoribonuclease II	K	Contig13	Tmel1513	COG4776	193	5e-50
Exoribonuclease R	K	Contig13	Tmel1513	COG0557	629	0.0
Exoribonuclease R	K	Contig13	Tmel1612	COG0557	41	4e-04
Exoribonuclease R	K	Contig13	Tmel1623	COG0557	38	0.003
Glycerol-3-phosphate responsive antiterminator (mRNA-binding)	K	Contig13	Tmel0616	COG1954	175	1e-45
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig13	Tmel1085	COG0317	38	0.004
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig13	Tmel1304	COG0317	36	0.001
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig13	Tmel1316	COG0317	702	0.0
Histone acetyltransferase	K	Contig13	Tmel0033	COG1243	36	0.003
Histone acetyltransferase	K	Contig13	Tmel0944	COG1243	65	1e-11
Histone acetyltransferase	K	Contig13	Tmel1049	COG1243	48	1e-06
Histone acetyltransferase	K	Contig13	Tmel1179	COG1243	193	1e-50
Histone acetyltransferase	K	Contig13	Tmel1368	COG1243	36	0.006
Histone acetyltransferase	K	Contig13	Tmel1565	COG1243	102	3e-23
NAD-dependent protein deacetylase SIR2 family	K	Contig13	Tmel1913	COG0846	240	8e-65
Negative regulator of flagellin synthesis (anti-sigma28 factor)	K	Contig13	Tmel0326	COG2747	34	0.003
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig13	Tmel0581	COG0378	57	1e-09
Nucleosome binding factor SPN SPT16 subunit	K	Contig13	Tmel0299	COG5406	52	9e-08
Nucleosome binding factor SPN SPT16 subunit	K	Contig13	Tmel0975	COG5406	47	1e-06
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	K	Contig13	Tmel1715	COG1842	43	6e-05
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig13	Tmel0889	COG1293	41	5e-04
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig13	Tmel1715	COG1293	37	0.003
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig13	Tmel1848	COG1293	274	1e-74
Predicted transcriptional regulator containing CBS domains	K	Contig13	Tmel0628	COG4109	59	5e-10
Predicted transcriptional regulator containing CBS domains	K	Contig13	Tmel0675	COG4109	51	5e-08
Predicted transcriptional regulator containing CBS domains	K	Contig13	Tmel1304	COG4109	50	1e-07
Predicted transcriptional regulator containing CBS domains	K	Contig13	Tmel1425	COG4109	74	4e-14
Predicted transcriptional regulator containing CBS domains	K	Contig13	Tmel1507	COG4109	44	3e-05
Predicted transcriptional regulator containing CBS domains	K	Contig13	Tmel1578	COG4109	51	3e-07
Predicted transcriptional regulator	K	Contig13	Tmel0742	COG4189	36	0.001
Predicted transcriptional regulator	K	Contig13	Tmel0829	COG4189	37	2e-04
Predicted transcriptional regulator	K	Contig13	Tmel1244	COG4190	34	0.003
Predicted transcriptional regulator	K	Contig13	Tmel1244	COG4742	37	2e-04
Predicted transcriptional regulator	K	Contig13	Tmel1244	COG4189	38	1e-04
Rad3-related DNA helicase	K	Contig13	Tmel0838	COG1199	41	2e-04
Rad3-related DNA helicase	K	Contig13	Tmel0901	COG1199	39	0.001
RecG-like helicase	K	Contig13	Tmel0034	COG1200	763	0.0
RecG-like helicase	K	Contig13	Tmel0276	COG1200	64	3e-11
RecG-like helicase	K	Contig13	Tmel0367	COG1200	40	0.001
RecG-like helicase	K	Contig13	Tmel0838	COG1200	63	6e-11
RecG-like helicase	K	Contig13	Tmel1686	COG1200	39	0.002
RecG-like helicase	K	Contig13	Tmel1847	COG1200	44	3e-05
RecG-like helicase	K	Contig13	Tmel1855	COG1200	354	1e-98
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel0261	COG4567	50	5e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel0460	COG4567	56	6e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel0843	COG4567	40	4e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel0931	COG4567	60	7e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel1145	COG4567	58	1e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel1147	COG4567	39	3e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel1263	COG4567	50	1e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel1516	COG4567	72	3e-14
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel1636	COG4567	40	4e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel1770	COG4567	48	1e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel1824	COG4567	59	3e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig13	Tmel1838	COG4567	53	2e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0114	COG3437	54	1e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0261	COG3437	56	5e-09
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0262	COG3437	106	3e-24
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0332	COG3437	63	3e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0335	COG3437	173	3e-44
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0460	COG3437	68	1e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0497	COG3437	209	3e-55
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0578	COG3437	37	0.002
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0772	COG3437	109	3e-25
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0843	COG3437	79	8e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0931	COG3437	72	1e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel0998	COG3437	184	9e-48
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1002	COG3437	197	1e-51
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1145	COG3437	58	9e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1147	COG3437	63	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1160	COG3437	35	0.009
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1194	COG3437	196	2e-51
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1204	COG3437	195	8e-51
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1263	COG3437	65	5e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1328	COG3437	124	6e-30
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1516	COG3437	90	1e-19
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1614	COG3437	106	3e-24
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1627	COG3437	181	1e-46
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1636	COG3437	66	4e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1770	COG3437	63	4e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1817	COG3437	155	8e-39
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1824	COG3437	80	2e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig13	Tmel1838	COG3437	97	1e-21
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel0114	COG2197	67	8e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel0261	COG2197	65	1e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel0460	COG2197	74	4e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel0777	COG2197	38	7e-04
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel0843	COG2197	63	7e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel0931	COG2197	98	1e-22
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel1145	COG2197	68	1e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel1147	COG2197	73	2e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel1263	COG2197	65	4e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel1516	COG2197	88	6e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel1636	COG2197	69	7e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel1770	COG2197	90	2e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel1824	COG2197	88	5e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig13	Tmel1838	COG2197	83	2e-17
Response regulator of citrate/malate metabolism	K	Contig13	Tmel0114	COG4565	61	1e-10
Response regulator of citrate/malate metabolism	K	Contig13	Tmel0261	COG4565	38	0.001
Response regulator of citrate/malate metabolism	K	Contig13	Tmel0460	COG4565	46	9e-07
Response regulator of citrate/malate metabolism	K	Contig13	Tmel0742	COG4565	35	0.004
Response regulator of citrate/malate metabolism	K	Contig13	Tmel0843	COG4565	43	1e-05
Response regulator of citrate/malate metabolism	K	Contig13	Tmel0931	COG4565	79	7e-17
Response regulator of citrate/malate metabolism	K	Contig13	Tmel1145	COG4565	48	1e-06
Response regulator of citrate/malate metabolism	K	Contig13	Tmel1147	COG4565	34	0.006
Response regulator of citrate/malate metabolism	K	Contig13	Tmel1263	COG4565	66	1e-12
Response regulator of citrate/malate metabolism	K	Contig13	Tmel1516	COG4565	79	2e-16
Response regulator of citrate/malate metabolism	K	Contig13	Tmel1636	COG4565	39	8e-04
Response regulator of citrate/malate metabolism	K	Contig13	Tmel1770	COG4565	75	8e-15
Response regulator of citrate/malate metabolism	K	Contig13	Tmel1824	COG4565	69	3e-13
Response regulator of citrate/malate metabolism	K	Contig13	Tmel1838	COG4565	59	3e-10
Response regulator of the LytR/AlgR family	K	Contig13	Tmel0114	COG3279	132	3e-32
Response regulator of the LytR/AlgR family	K	Contig13	Tmel0261	COG3279	37	0.003
Response regulator of the LytR/AlgR family	K	Contig13	Tmel0460	COG3279	63	6e-12
Response regulator of the LytR/AlgR family	K	Contig13	Tmel0843	COG3279	42	1e-05
Response regulator of the LytR/AlgR family	K	Contig13	Tmel0931	COG3279	70	5e-14
Response regulator of the LytR/AlgR family	K	Contig13	Tmel1145	COG3279	38	0.001
Response regulator of the LytR/AlgR family	K	Contig13	Tmel1147	COG3279	41	4e-05
Response regulator of the LytR/AlgR family	K	Contig13	Tmel1263	COG3279	53	2e-08
Response regulator of the LytR/AlgR family	K	Contig13	Tmel1516	COG3279	68	4e-13
Response regulator of the LytR/AlgR family	K	Contig13	Tmel1770	COG3279	56	3e-09
Response regulator of the LytR/AlgR family	K	Contig13	Tmel1824	COG3279	50	1e-07
Response regulator of the LytR/AlgR family	K	Contig13	Tmel1838	COG3279	59	3e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel0114	COG0745	49	4e-07
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel0261	COG0745	76	5e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel0460	COG0745	85	1e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel0497	COG0745	41	1e-04
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel0843	COG0745	98	1e-22
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel0931	COG0745	86	8e-19
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel1145	COG0745	70	4e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel1147	COG0745	72	2e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel1263	COG0745	80	1e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel1516	COG0745	203	1e-53
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel1636	COG0745	56	4e-09
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel1770	COG0745	72	5e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel1824	COG0745	204	6e-54
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig13	Tmel1838	COG0745	245	2e-66
Serine phosphatase RsbU regulator of sigma subunit	K	Contig13	Tmel0493	COG2208	47	2e-06
Serine phosphatase RsbU regulator of sigma subunit	K	Contig13	Tmel0787	COG2208	96	5e-21
Serine phosphatase RsbU regulator of sigma subunit	K	Contig13	Tmel0844	COG2208	162	6e-41
Serine phosphatase RsbU regulator of sigma subunit	K	Contig13	Tmel1711	COG2208	84	1e-17
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig13	Tmel0079	COG4650	125	1e-29
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig13	Tmel1538	COG4650	36	0.004
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig13	Tmel0398	COG1974	54	9e-09
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig13	Tmel1184	COG1974	175	2e-45
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig13	Tmel1479	COG1974	65	3e-12
Superfamily II DNA and RNA helicase	K	Contig13	Tmel0034	COG0513	76	8e-15
Superfamily II DNA and RNA helicase	K	Contig13	Tmel0276	COG0513	41	5e-04
Superfamily II DNA and RNA helicase	K	Contig13	Tmel0367	COG0513	72	2e-13
Superfamily II DNA and RNA helicase	K	Contig13	Tmel0589	COG0513	39	0.002
Superfamily II DNA and RNA helicase	K	Contig13	Tmel0838	COG0513	390	1.0e-109
Superfamily II DNA and RNA helicase	K	Contig13	Tmel1686	COG0513	60	6e-10
Superfamily II DNA and RNA helicase	K	Contig13	Tmel1847	COG0513	73	7e-14
Superfamily II DNA and RNA helicase	K	Contig13	Tmel1855	COG0513	78	4e-15
Transcriptional accessory protein	K	Contig13	Tmel0274	COG2183	589	1.0e-169
Transcriptional accessory protein	K	Contig13	Tmel1166	COG2183	42	2e-05
Transcriptional accessory protein	K	Contig13	Tmel1513	COG2183	38	0.004
Transcriptional accessory protein	K	Contig13	Tmel1612	COG2183	39	0.001
Transcriptional accessory protein	K	Contig13	Tmel1623	COG2183	54	4e-08
Transcriptional accessory protein	K	Contig13	Tmel1741	COG2183	49	2e-07
Transcriptional activator of acetoin/glycerol metabolism	K	Contig13	Tmel0024	COG3284	37	0.006
Transcriptional activator of acetoin/glycerol metabolism	K	Contig13	Tmel0079	COG3284	260	1e-70
Transcriptional activator of acetoin/glycerol metabolism	K	Contig13	Tmel0941	COG3284	43	3e-05
Transcriptional activator of acetoin/glycerol metabolism	K	Contig13	Tmel1493	COG3284	39	0.001
Transcriptional activator of acetoin/glycerol metabolism	K	Contig13	Tmel1926	COG3284	56	2e-09

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATP-dependent transcriptional regulator	K	Contig13	Tmel0777	COG2909	35	0.004
Mn-dependent transcriptional regulator	K	Contig13	Tmel0091	COG1321	37	8e-04
Mn-dependent transcriptional regulator	K	Contig13	Tmel0135	COG1321	40	1e-04
Mn-dependent transcriptional regulator	K	Contig13	Tmel0156	COG1321	88	4e-19
Mn-dependent transcriptional regulator	K	Contig13	Tmel1200	COG1321	33	0.004
Mn-dependent transcriptional regulator	K	Contig13	Tmel1531	COG1321	34	0.005
Mn-dependent transcriptional regulator	K	Contig13	Tmel1784	COG1321	88	3e-19
Predicted transcriptional regulator consists of a Zn-ribbon and ATP-cone domains	K	Contig13	Tmel1376	COG1327	183	4e-48
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen	K	Contig13	Tmel1088	COG2865	50	2e-07
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen	K	Contig13	Tmel1405	COG2865	35	0.004
Predicted transcriptional regulator containing the HTH domain	K	Contig13	Tmel1302	COG1386	83	8e-18
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig13	Tmel0089	COG2524	39	3e-04
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig13	Tmel0628	COG2524	91	1e-19
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig13	Tmel0675	COG2524	67	6e-13
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig13	Tmel1425	COG2524	83	1e-16
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig13	Tmel1507	COG2524	51	2e-07
Predicted transcriptional regulator contains C-terminal CBS domains	K	Contig13	Tmel1578	COG2524	63	4e-11
Predicted transcriptional regulator	K	Contig13	Tmel0091	COG2378	35	0.003
Predicted transcriptional regulator	K	Contig13	Tmel0135	COG3355	34	0.003
Predicted transcriptional regulator	K	Contig13	Tmel0398	COG2944	39	4e-04
Predicted transcriptional regulator	K	Contig13	Tmel0398	COG2932	37	0.001
Predicted transcriptional regulator	K	Contig13	Tmel0398	COG1709	38	7e-04
Predicted transcriptional regulator	K	Contig13	Tmel0398	COG1395	41	1e-04
Predicted transcriptional regulator	K	Contig13	Tmel0742	COG2345	40	2e-04
Predicted transcriptional regulator	K	Contig13	Tmel1086	COG2378	33	0.004
Predicted transcriptional regulator	K	Contig13	Tmel1184	COG2932	44	9e-06
Predicted transcriptional regulator	K	Contig13	Tmel1195	COG3355	34	0.003
Predicted transcriptional regulator	K	Contig13	Tmel1200	COG1959	33	0.004
Predicted transcriptional regulator	K	Contig13	Tmel1200	COG2345	35	0.001
Predicted transcriptional regulator	K	Contig13	Tmel1200	COG1497	34	0.003
Predicted transcriptional regulator	K	Contig13	Tmel1228	COG2345	40	4e-05
Predicted transcriptional regulator	K	Contig13	Tmel1405	COG2345	35	0.003
Predicted transcriptional regulator	K	Contig13	Tmel1405	COG1497	34	0.008
Predicted transcriptional regulator	K	Contig13	Tmel1478	COG2944	35	0.001
Predicted transcriptional regulator	K	Contig13	Tmel1478	COG1709	32	0.009
Predicted transcriptional regulator	K	Contig13	Tmel1478	COG1395	48	2e-07
Predicted transcriptional regulator	K	Contig13	Tmel1479	COG2944	40	1e-04
Predicted transcriptional regulator	K	Contig13	Tmel1479	COG2932	57	1e-09
Predicted transcriptional regulator	K	Contig13	Tmel1479	COG1395	45	4e-06
Predicted transcriptional regulator	K	Contig13	Tmel1558	COG1959	98	2e-22
Predicted transcriptional regulators	K	Contig13	Tmel0398	COG1396	53	1e-08
Predicted transcriptional regulators	K	Contig13	Tmel0398	COG1476	57	1e-09
Predicted transcriptional regulators	K	Contig13	Tmel0572	COG1396	45	3e-06
Predicted transcriptional regulators	K	Contig13	Tmel0572	COG1476	44	5e-06
Predicted transcriptional regulators	K	Contig13	Tmel0829	COG0640	56	7e-10
Predicted transcriptional regulators	K	Contig13	Tmel0829	COG1777	35	0.002
Predicted transcriptional regulators	K	Contig13	Tmel1012	COG1725	69	3e-13
Predicted transcriptional regulators	K	Contig13	Tmel1133	COG1725	107	3e-25
Predicted transcriptional regulators	K	Contig13	Tmel1205	COG1695	66	6e-13
Predicted transcriptional regulators	K	Contig13	Tmel1228	COG1695	73	7e-15
Predicted transcriptional regulators	K	Contig13	Tmel1244	COG0640	58	1e-10
Predicted transcriptional regulators	K	Contig13	Tmel1244	COG1733	38	2e-04
Predicted transcriptional regulators	K	Contig13	Tmel1244	COG1777	43	4e-06
Predicted transcriptional regulators	K	Contig13	Tmel1357	COG1725	78	1e-16
Predicted transcriptional regulators	K	Contig13	Tmel1405	COG0640	37	0.001
Predicted transcriptional regulators	K	Contig13	Tmel1478	COG1396	39	7e-05
Predicted transcriptional regulators	K	Contig13	Tmel1478	COG1476	59	6e-11
Predicted transcriptional regulators	K	Contig13	Tmel1479	COG1396	64	1e-11
Predicted transcriptional regulators	K	Contig13	Tmel1479	COG1476	51	5e-08
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig13	Tmel0398	COG3620	35	0.007
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig13	Tmel0572	COG3620	45	4e-06
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig13	Tmel0628	COG3620	51	8e-08
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig13	Tmel0675	COG3620	53	1e-08
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig13	Tmel1425	COG3620	67	6e-12
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig13	Tmel1478	COG3620	36	7e-04
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig13	Tmel1507	COG3620	47	2e-06
Predicted transcriptional regulator with C-terminal CBS domains	K	Contig13	Tmel1578	COG3620	41	3e-04
Putative transcriptional regulator homolog of Bvg accessory factor	K	Contig13	Tmel1367	COG1521	185	2e-48
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig13	Tmel0079	COG3604	340	2e-94
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig13	Tmel0335	COG3604	39	5e-04
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig13	Tmel1926	COG3604	49	3e-07
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig13	Tmel0079	COG3829	511	1.0e-146
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig13	Tmel0206	COG3829	38	0.002
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig13	Tmel0285	COG3829	49	2e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig13	Tmel0787	COG3829	40	2e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig13	Tmel0888	COG3829	44	2e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig13	Tmel1711	COG3829	53	3e-08
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig13	Tmel1926	COG3829	71	1e-13
Transcriptional regulator contains sigma factor-related N-terminal domain	K	Contig13	Tmel0135	COG2390	37	8e-04
Transcriptional regulator contains sigma factor-related N-terminal domain	K	Contig13	Tmel1200	COG2390	36	6e-04
Transcriptional regulator	K	Contig13	Tmel0135	COG1414	40	7e-05
Transcriptional regulator	K	Contig13	Tmel0410	COG1414	124	2e-30
Transcriptional regulator	K	Contig13	Tmel0457	COG1309	64	7e-12
Transcriptional regulator	K	Contig13	Tmel0742	COG1414	35	0.003
Transcriptional regulator	K	Contig13	Tmel1164	COG1309	65	2e-12
Transcriptional regulator	K	Contig13	Tmel1184	COG1414	36	0.002
Transcriptional regulator	K	Contig13	Tmel1531	COG1414	36	8e-04
Transcriptional regulator	K	Contig13	Tmel1561	COG1316	140	2e-34
Transcriptional regulator of aromatic amino acids metabolism	K	Contig13	Tmel0079	COG3283	271	8e-74
Transcriptional regulator of aromatic amino acids metabolism	K	Contig13	Tmel1926	COG3283	54	1e-08
Transcriptional regulator of heat shock gene	K	Contig13	Tmel0089	COG1420	181	7e-47
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel0048	COG1167	37	0.003
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel0110	COG1167	342	2e-95
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel0111	COG1167	46	4e-06
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel0376	COG1167	152	5e-38
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel0439	COG1167	44	2e-05
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel0509	COG1167	53	3e-08
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel0860	COG1167	57	2e-09
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel0870	COG1167	40	3e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel1012	COG1167	60	3e-10
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel1133	COG1167	76	9e-16
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel1242	COG1167	142	5e-35
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel1259	COG1167	95	1e-20
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel1346	COG1167	47	2e-06
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel1357	COG1167	65	1e-12
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel1881	COG1167	39	5e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig13	Tmel1887	COG1167	40	3e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig13	Tmel0024	COG1221	40	8e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig13	Tmel0079	COG1221	265	6e-72
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig13	Tmel1538	COG1221	42	4e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig13	Tmel1926	COG1221	72	6e-14
Transcriptional regulators	K	Contig13	Tmel0135	COG1846	71	3e-14
Transcriptional regulators	K	Contig13	Tmel0471	COG1737	58	2e-09
Transcriptional regulators	K	Contig13	Tmel0693	COG1737	52	6e-08
Transcriptional regulators	K	Contig13	Tmel0763	COG1609	238	4e-64
Transcriptional regulators	K	Contig13	Tmel0782	COG1609	215	3e-57
Transcriptional regulators	K	Contig13	Tmel1012	COG1802	64	1e-11
Transcriptional regulators	K	Contig13	Tmel1012	COG2188	96	3e-21
Transcriptional regulators	K	Contig13	Tmel1012	COG2186	81	1e-16
Transcriptional regulators	K	Contig13	Tmel1012	COG1609	142	3e-35
Transcriptional regulators	K	Contig13	Tmel1133	COG1802	44	2e-06
Transcriptional regulators	K	Contig13	Tmel1133	COG2188	67	4e-13
Transcriptional regulators	K	Contig13	Tmel1133	COG2186	58	1e-10
Transcriptional regulators	K	Contig13	Tmel1357	COG1802	46	8e-07
Transcriptional regulators	K	Contig13	Tmel1357	COG2188	68	1e-13
Transcriptional regulators	K	Contig13	Tmel1357	COG2186	58	1e-10
Transcriptional regulators	K	Contig13	Tmel1531	COG1846	65	2e-12
Transcriptional regulators	K	Contig13	Tmel1832	COG1846	59	1e-10
Transcriptional regulators of sugar metabolism	K	Contig13	Tmel0091	COG1349	38	5e-04
Transcriptional regulators of sugar metabolism	K	Contig13	Tmel1012	COG1349	37	0.002
Transcriptional regulator/sugar kinase	K	Contig13	Tmel0688	COG1940	74	1e-14
Transcriptional regulator/sugar kinase	K	Contig13	Tmel1141	COG1940	216	2e-57
Transcriptional regulator/sugar kinase	K	Contig13	Tmel1822	COG1940	119	2e-28

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcription-repair coupling factor (superfamily II helicase)	K	Contig13	Tmel0034	COG1197	354	1e-98
Transcription-repair coupling factor (superfamily II helicase)	K	Contig13	Tmel0276	COG1197	40	5e-04
Transcription-repair coupling factor (superfamily II helicase)	K	Contig13	Tmel0755	COG1197	35	0.008
Transcription-repair coupling factor (superfamily II helicase)	K	Contig13	Tmel0838	COG1197	39	9e-04
Transcription-repair coupling factor (superfamily II helicase)	K	Contig13	Tmel1847	COG1197	145	7e-36
Transcription-repair coupling factor (superfamily II helicase)	K	Contig13	Tmel1855	COG1197	754	0.0

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