Intracellular trafficking and secretion

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Biopolymer transport protein	U	BX548020	SYNW0957	COG0811	37	0.003

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar biosynthesis/type III secretory pathway ATPase	U	BX548020	SYNW0494	COG1157	209	5e-55
Flagellar biosynthesis/type III secretory pathway ATPase	U	BX548020	SYNW0512	COG1157	228	7e-61
Predicted ATPase involved in biogenesis of flagella	U	BX548020	SYNW0550	COG2874	59	9e-10
Predicted ATPase involved in biogenesis of flagella	U	BX548020	SYNW2062	COG2874	45	1e-05
Predicted ATPase involved in biogenesis of flagella	U	BX548020	SYNW2245	COG2874	54	3e-08

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flp pilus assembly protein ATPase CpaE	U	BX548020	SYNW1971	COG4963	74	1e-14
Flp pilus assembly protein ATPase CpaF	U	BX548020	SYNW0022	COG4962	63	7e-11
Flp pilus assembly protein ATPase CpaF	U	BX548020	SYNW1831	COG4962	43	2e-05
Flp pilus assembly protein ATPase CpaF	U	BX548020	SYNW1832	COG4962	51	3e-08
Flp pilus assembly protein secretin CpaC	U	BX548020	SYNW2336	COG4964	97	2e-21
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW0006	COG5010	52	4e-08
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW0056	COG5010	40	9e-05
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW0136	COG5010	44	1e-05
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW0478	COG5010	45	3e-05
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW0986	COG5010	51	4e-07
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW0989	COG5010	40	5e-04
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW1273	COG5010	67	6e-12
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW2209	COG5010	42	8e-05
Flp pilus assembly protein TadD contains TPR repeats	U	BX548020	SYNW2240	COG5010	42	3e-05
GTPase-activating protein that regulates ARFs (ADP-ribosylation factors) involved in ARF-mediated vesicular transport	U	BX548020	SYNW2303	COG5347	40	0.001
Hemolysin activation/secretion protein	U	BX548020	SYNW0555	COG2831	61	4e-10
Lipoprotein signal peptidase	U	BX548020	SYNW1079	COG0597	100	4e-23
Outer membrane protein	U	BX548020	SYNW0194	COG1538	37	0.003
Outer membrane protein	U	BX548020	SYNW2187	COG1538	143	3e-35
Periplasmic component of the Tol biopolymer transport system	U	BX548020	SYNW0331	COG0823	50	6e-08
Periplasmic component of the Tol biopolymer transport system	U	BX548020	SYNW0332	COG0823	50	5e-08
Periplasmic serine protease (ClpP class)	U	BX548020	SYNW0064	COG0616	45	5e-06
Periplasmic serine protease (ClpP class)	U	BX548020	SYNW1301	COG0616	38	4e-04
Periplasmic serine protease (ClpP class)	U	BX548020	SYNW1649	COG0616	50	1e-07
Periplasmic serine protease (ClpP class)	U	BX548020	SYNW1884	COG0616	204	7e-54
Phox homology (PX) domain protein	U	BX548020	SYNW0005	COG5391	39	0.001
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	BX548020	SYNW1818	COG0758	37	7e-04
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	BX548020	SYNW1977	COG0758	238	5e-64
Preprotein translocase subunit Sec63	U	BX548020	SYNW0024	COG5407	51	1e-07
Preprotein translocase subunit Sec63	U	BX548020	SYNW0627	COG5407	44	5e-06
Preprotein translocase subunit Sec63	U	BX548020	SYNW1268	COG5407	44	2e-05
Preprotein translocase subunit Sec63	U	BX548020	SYNW1934	COG5407	57	1e-09
Preprotein translocase subunit Sec63	U	BX548020	SYNW2221	COG5407	41	6e-05

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	BX548020	SYNW0086	COG0653	677	0.0
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	BX548020	SYNW2107	COG0653	75	1e-15
Preprotein translocase subunit SecD	U	BX548020	SYNW1056	COG0342	304	1e-83
Preprotein translocase subunit SecD	U	BX548020	SYNW1057	COG0342	76	5e-15
Preprotein translocase subunit SecD	U	BX548020	SYNW2119	COG0342	43	1e-04
Preprotein translocase subunit SecD	U	BX548020	SYNW2156	COG0342	60	1e-09
Preprotein translocase subunit SecE	U	BX548020	SYNW2345	COG0690	42	7e-06
Preprotein translocase subunit SecF	U	BX548020	SYNW1056	COG0341	91	1e-19
Preprotein translocase subunit SecF	U	BX548020	SYNW1057	COG0341	191	5e-50
Preprotein translocase subunit SecF	U	BX548020	SYNW2119	COG0341	37	0.008
Preprotein translocase subunit SecF	U	BX548020	SYNW2156	COG0341	38	0.005
Preprotein translocase subunit SecG	U	BX548020	SYNW0518	COG1314	40	4e-05
Preprotein translocase subunit SecY	U	BX548020	SYNW2085	COG0201	333	1e-92
Preprotein translocase subunit YidC	U	BX548020	SYNW1890	COG0706	97	2e-21

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Protease subunit of ATP-dependent Clp protease	U	BX548020	SYNW0064	COG0740	282	2e-77
Protease subunit of ATP-dependent Clp protease	U	BX548020	SYNW1301	COG0740	288	2e-79
Protease subunit of ATP-dependent Clp protease	U	BX548020	SYNW1648	COG0740	220	9e-59
Protease subunit of ATP-dependent Clp protease	U	BX548020	SYNW1649	COG0740	265	2e-72
Sec-independent protein secretion pathway components	U	BX548020	SYNW0270	COG1826	61	1e-11
Sec-independent protein secretion pathway components	U	BX548020	SYNW2488	COG1826	54	2e-09
Sec-independent protein secretion pathway component TatC	U	BX548020	SYNW1839	COG0805	177	7e-46
Signal peptidase I	U	BX548020	SYNW0996	COG0681	58	3e-10
Signal peptidase I	U	BX548020	SYNW1627	COG0681	36	9e-04
Signal peptidase I	U	BX548020	SYNW1765	COG0681	63	2e-11
Signal recognition particle GTPase	U	BX548020	SYNW0011	COG0552	349	3e-97
Signal recognition particle GTPase	U	BX548020	SYNW0011	COG0541	216	4e-57
Signal recognition particle GTPase	U	BX548020	SYNW1344	COG0541	37	7e-04
Signal recognition particle GTPase	U	BX548020	SYNW1541	COG0552	36	0.009
Signal recognition particle GTPase	U	BX548020	SYNW1618	COG0552	217	2e-57
Signal recognition particle GTPase	U	BX548020	SYNW1618	COG0541	568	1.0e-163
Tfp pilus assembly protein ATPase PilU	U	BX548020	SYNW0022	COG5008	115	9e-27
Tfp pilus assembly protein ATPase PilU	U	BX548020	SYNW1831	COG5008	119	2e-28
Tfp pilus assembly protein ATPase PilU	U	BX548020	SYNW1832	COG5008	141	3e-35
Tfp pilus assembly protein FimV	U	BX548020	SYNW1957	COG3170	35	0.006
Tfp pilus assembly protein FimV	U	BX548020	SYNW2303	COG3170	42	4e-04
Tfp pilus assembly protein PilF	U	BX548020	SYNW0006	COG3063	43	3e-05
Tfp pilus assembly protein PilF	U	BX548020	SYNW0136	COG3063	41	6e-05
Tfp pilus assembly protein PilF	U	BX548020	SYNW0986	COG3063	41	3e-04
Tfp pilus assembly protein PilF	U	BX548020	SYNW0989	COG3063	47	3e-06
Tfp pilus assembly protein PilF	U	BX548020	SYNW1273	COG3063	63	1e-10
Tfp pilus assembly protein PilF	U	BX548020	SYNW2209	COG3063	48	1e-06
Tfp pilus assembly protein PilF	U	BX548020	SYNW2240	COG3063	50	1e-07
Tfp pilus assembly protein pilus retraction ATPase PilT	U	BX548020	SYNW0022	COG2805	178	2e-45
Tfp pilus assembly protein pilus retraction ATPase PilT	U	BX548020	SYNW1831	COG2805	199	1e-52
Tfp pilus assembly protein pilus retraction ATPase PilT	U	BX548020	SYNW1832	COG2805	215	1e-57
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	BX548020	SYNW0022	COG2804	482	1.0e-137
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	BX548020	SYNW1831	COG2804	89	2e-19
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	BX548020	SYNW1832	COG2804	106	7e-25
Type II secretory pathway component HofQ	U	BX548020	SYNW2336	COG4796	100	1e-22
Type II secretory pathway component PulD	U	BX548020	SYNW2336	COG1450	103	1e-23
Type II secretory pathway component PulF	U	BX548020	SYNW0018	COG1459	297	1e-81
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	U	BX548020	SYNW0787	COG1989	119	3e-28
Type IV secretory pathway protease TraF	U	BX548020	SYNW0996	COG4959	53	1e-08
Type IV secretory pathway VirB10 protein	U	BX548020	SYNW0881	COG2948	45	3e-05
Type IV secretory pathway VirB10 protein	U	BX548020	SYNW1565	COG2948	40	5e-04
Type IV secretory pathway VirB10 protein	U	BX548020	SYNW2303	COG2948	43	2e-04
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	BX548020	SYNW0022	COG0630	72	1e-13
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	BX548020	SYNW1831	COG0630	40	1e-04
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	BX548020	SYNW1832	COG0630	54	7e-09
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	BX548020	SYNW2064	COG0630	40	6e-04

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