Signal Transduction Mechanisms

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX548020	SYNW0607	COG0834	47	3e-07
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX548020	SYNW0767	COG0834	57	2e-09
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	BX548020	SYNW0840	COG0834	105	4e-24
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)	T	BX548020	SYNW1027	COG1366	58	2e-10
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	BX548020	SYNW0807	COG2172	42	1e-04
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	BX548020	SYNW0948	COG2172	39	6e-04
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	BX548020	SYNW1068	COG2172	60	1e-10
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	BX548020	SYNW0246	COG4251	64	1e-11
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	BX548020	SYNW0551	COG4251	100	3e-22
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	BX548020	SYNW0753	COG4251	119	4e-28
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	BX548020	SYNW0807	COG4251	61	2e-10
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	BX548020	SYNW0948	COG4251	82	6e-17
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	BX548020	SYNW0193	COG0664	48	4e-06
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	BX548020	SYNW0275	COG0664	123	2e-29
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	BX548020	SYNW0411	COG0664	49	2e-06
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	BX548020	SYNW1019	COG0664	110	7e-26
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	BX548020	SYNW1758	COG0664	64	3e-12
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	BX548020	SYNW2108	COG0664	56	3e-09
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	BX548020	SYNW2423	COG0664	42	8e-06
CBS-domain-containing membrane protein	T	BX548020	SYNW0101	COG3448	50	3e-07
CBS-domain-containing membrane protein	T	BX548020	SYNW0187	COG3448	40	4e-04
CBS-domain-containing membrane protein	T	BX548020	SYNW0450	COG3448	40	2e-04
CBS-domain-containing membrane protein	T	BX548020	SYNW0770	COG3448	58	4e-10
Chemotaxis protein histidine kinase and related kinase	T	BX548020	SYNW0551	COG0643	36	0.007
Chemotaxis protein histidine kinase and related kinase	T	BX548020	SYNW0753	COG0643	39	5e-04
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX548020	SYNW0126	COG2201	63	3e-11
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX548020	SYNW0808	COG2201	54	9e-09
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX548020	SYNW0904	COG2201	37	0.001
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX548020	SYNW0947	COG2201	54	1e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX548020	SYNW1875	COG2201	34	0.009
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX548020	SYNW2236	COG2201	58	6e-10
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX548020	SYNW2246	COG2201	71	5e-14
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	BX548020	SYNW2289	COG2201	70	1e-13
conserved hypothetical protein contains FHA domain	T	BX548020	SYNW0881	COG3456	47	1e-05
conserved hypothetical protein contains FHA domain	T	BX548020	SYNW1565	COG3456	40	8e-04
conserved hypothetical protein contains FHA domain	T	BX548020	SYNW2303	COG3456	50	2e-06
FOG: CheY-like receiver	T	BX548020	SYNW0126	COG0784	90	2e-19
FOG: CheY-like receiver	T	BX548020	SYNW0808	COG0784	87	1e-18
FOG: CheY-like receiver	T	BX548020	SYNW0904	COG0784	57	1e-09
FOG: CheY-like receiver	T	BX548020	SYNW0947	COG0784	93	2e-20
FOG: CheY-like receiver	T	BX548020	SYNW1875	COG0784	71	8e-14
FOG: CheY-like receiver	T	BX548020	SYNW2236	COG0784	90	1e-19
FOG: CheY-like receiver	T	BX548020	SYNW2246	COG0784	96	3e-21
FOG: CheY-like receiver	T	BX548020	SYNW2289	COG0784	90	2e-19
FOG: GAF domain	T	BX548020	SYNW0012	COG2203	37	0.003
FOG: GAF domain	T	BX548020	SYNW0380	COG2203	57	2e-09
FOG: GAF domain	T	BX548020	SYNW1319	COG2203	57	1e-09
FOG: HAMP domain	T	BX548020	SYNW0551	COG2770	40	8e-04
Glycosyl transferase related to UDP-glucuronosyltransferase	T	BX548020	SYNW2034	COG1819	36	0.004
Glycosyl transferase related to UDP-glucuronosyltransferase	T	BX548020	SYNW2333	COG1819	61	1e-10
Growth inhibitor	T	BX548020	SYNW2381	COG2337	38	3e-04
Guanosine polyphosphate pyrophosphohydrolase/synthetase	T	BX548020	SYNW2324	COG0317	807	0.0
HD-GYP domain	T	BX548020	SYNW0739	COG2206	39	0.001
Methyl-accepting chemotaxis protein	T	BX548020	SYNW0551	COG0840	41	3e-04
Methylase of chemotaxis methyl-accepting protein	T	BX548020	SYNW0487	COG1352	40	3e-04
Methylase of chemotaxis methyl-accepting protein	T	BX548020	SYNW1273	COG1352	38	0.003
Mn2+-dependent serine/threonine protein kinase	T	BX548020	SYNW2524	COG3642	45	2e-05
N-acyl-L-homoserine lactone synthetase	T	BX548020	SYNW0403	COG3916	35	0.007
Osmosensitive K+ channel histidine kinase	T	BX548020	SYNW0246	COG2205	92	6e-20
Osmosensitive K+ channel histidine kinase	T	BX548020	SYNW0551	COG2205	156	4e-39
Osmosensitive K+ channel histidine kinase	T	BX548020	SYNW0753	COG2205	142	4e-35
Osmosensitive K+ channel histidine kinase	T	BX548020	SYNW0807	COG2205	76	4e-15
Osmosensitive K+ channel histidine kinase	T	BX548020	SYNW0948	COG2205	135	6e-33
Osmosensitive K+ channel histidine kinase	T	BX548020	SYNW1979	COG2205	44	2e-05
Osmosensitive K+ channel histidine kinase	T	BX548020	SYNW2043	COG2205	47	3e-06
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	T	BX548020	SYNW1879	COG1842	134	8e-33
Phosphate starvation-inducible protein PhoH predicted ATPase	T	BX548020	SYNW1616	COG1702	329	1e-91
Phosphate starvation-inducible protein PhoH predicted ATPase	T	BX548020	SYNW1946	COG1702	103	2e-23
Phosphohistidine phosphatase SixA	T	BX548020	SYNW1763	COG2062	44	2e-05
Phosphohistidine phosphatase SixA	T	BX548020	SYNW2276	COG2062	89	1e-19
Predicted ATPase related to phosphate starvation-inducible protein PhoH	T	BX548020	SYNW1616	COG1875	148	6e-37
Predicted ATPase related to phosphate starvation-inducible protein PhoH	T	BX548020	SYNW1946	COG1875	428	1.0e-121
Predicted ATPase related to phosphate starvation-inducible protein PhoH	T	BX548020	SYNW2485	COG1875	36	0.002
Predicted membrane GTPase involved in stress response	T	BX548020	SYNW0597	COG1217	85	1e-17
Predicted membrane GTPase involved in stress response	T	BX548020	SYNW1109	COG1217	977	0.0
Predicted membrane GTPase involved in stress response	T	BX548020	SYNW1149	COG1217	111	1e-25
Predicted membrane GTPase involved in stress response	T	BX548020	SYNW1613	COG1217	36	0.005
Predicted membrane GTPase involved in stress response	T	BX548020	SYNW1684	COG1217	238	8e-64
Predicted membrane GTPase involved in stress response	T	BX548020	SYNW2137	COG1217	126	8e-30
Predicted membrane GTPase involved in stress response	T	BX548020	SYNW2138	COG1217	117	1e-27
Predicted periplasmic ligand-binding sensor domain	T	BX548020	SYNW0205	COG3292	35	0.007
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX548020	SYNW0101	COG2905	36	0.006
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX548020	SYNW0187	COG2905	40	2e-04
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX548020	SYNW0450	COG2905	43	4e-05
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX548020	SYNW0770	COG2905	46	1e-06
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	BX548020	SYNW0959	COG2905	46	1e-05
Predicted signal transduction protein with a C-terminal ATPase domain	T	BX548020	SYNW0753	COG2972	49	5e-07
Predicted signal transduction protein with a C-terminal ATPase domain	T	BX548020	SYNW0807	COG2972	58	1e-09
Predicted signal transduction protein with a C-terminal ATPase domain	T	BX548020	SYNW0948	COG2972	42	6e-05
Protein-tyrosine-phosphatase	T	BX548020	SYNW0915	COG0394	82	1e-17
Protein-tyrosine-phosphatase	T	BX548020	SYNW2026	COG0394	135	2e-33
Putative regulator of cell autolysis	T	BX548020	SYNW0551	COG3275	37	0.004
RecA-superfamily ATPase implicated in signal transduction	T	BX548020	SYNW0494	COG0467	37	0.004
RecA-superfamily ATPase implicated in signal transduction	T	BX548020	SYNW0550	COG0467	194	1e-50
RecA-superfamily ATPase implicated in signal transduction	T	BX548020	SYNW0636	COG0467	38	0.004
RecA-superfamily ATPase implicated in signal transduction	T	BX548020	SYNW0891	COG0467	40	3e-04
RecA-superfamily ATPase implicated in signal transduction	T	BX548020	SYNW2062	COG0467	65	9e-12
RecA-superfamily ATPase implicated in signal transduction	T	BX548020	SYNW2245	COG0467	76	4e-15
Response regulator	T	BX548020	SYNW0126	COG4566	69	2e-13
Response regulator	T	BX548020	SYNW0566	COG4566	45	6e-06
Response regulator	T	BX548020	SYNW0808	COG4566	79	4e-16
Response regulator	T	BX548020	SYNW0904	COG4566	34	0.007
Response regulator	T	BX548020	SYNW0947	COG4566	71	5e-14
Response regulator	T	BX548020	SYNW1380	COG4566	48	7e-07
Response regulator	T	BX548020	SYNW1385	COG4566	51	5e-08
Response regulator	T	BX548020	SYNW1875	COG4566	58	5e-10
Response regulator	T	BX548020	SYNW1973	COG4566	42	9e-06
Response regulator	T	BX548020	SYNW2236	COG4566	73	2e-14
Response regulator	T	BX548020	SYNW2246	COG4566	72	4e-14
Response regulator	T	BX548020	SYNW2268	COG4566	55	1e-09
Response regulator	T	BX548020	SYNW2289	COG4566	109	1e-25
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX548020	SYNW0126	COG4567	65	7e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX548020	SYNW0808	COG4567	57	9e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX548020	SYNW0904	COG4567	34	0.009
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX548020	SYNW0947	COG4567	63	2e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX548020	SYNW1875	COG4567	52	2e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX548020	SYNW2236	COG4567	61	1e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX548020	SYNW2246	COG4567	67	9e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	BX548020	SYNW2289	COG4567	66	2e-12
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX548020	SYNW0126	COG3706	100	1e-22
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX548020	SYNW0808	COG3706	80	2e-16
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX548020	SYNW0904	COG3706	66	2e-12
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX548020	SYNW0947	COG3706	88	4e-19
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX548020	SYNW1875	COG3706	67	9e-13
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX548020	SYNW2236	COG3706	102	3e-23
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX548020	SYNW2246	COG3706	103	1e-23
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	BX548020	SYNW2289	COG3706	100	1e-22
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX548020	SYNW0126	COG3437	108	4e-25
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX548020	SYNW0808	COG3437	88	4e-19
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX548020	SYNW0904	COG3437	61	6e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX548020	SYNW0947	COG3437	100	7e-23
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX548020	SYNW1875	COG3437	72	3e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX548020	SYNW2236	COG3437	101	4e-23
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX548020	SYNW2246	COG3437	113	2e-26
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	BX548020	SYNW2289	COG3437	105	3e-24
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW0126	COG2197	80	2e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW0566	COG2197	108	3e-25
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW0808	COG2197	72	4e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW0904	COG2197	60	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW0947	COG2197	78	4e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW1380	COG2197	91	8e-20
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW1385	COG2197	122	2e-29
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW1875	COG2197	70	1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW1973	COG2197	58	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW2236	COG2197	74	8e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW2246	COG2197	87	1e-18
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW2268	COG2197	81	2e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW2289	COG2197	153	1e-38
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	BX548020	SYNW2317	COG2197	35	0.008
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW0126	COG2204	97	1e-21
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW0327	COG2204	48	1e-06
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW0808	COG2204	100	2e-22
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW0904	COG2204	67	1e-12
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW0947	COG2204	92	4e-20
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW1707	COG2204	35	0.010
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW1875	COG2204	68	6e-13
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW2158	COG2204	44	4e-05
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW2236	COG2204	90	1e-19
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW2246	COG2204	103	1e-23
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW2289	COG2204	104	6e-24
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW2346	COG2204	40	0.001
Response regulator containing CheY-like receiver and SARP domains	T	BX548020	SYNW0126	COG3947	80	2e-16
Response regulator containing CheY-like receiver and SARP domains	T	BX548020	SYNW0808	COG3947	68	8e-13
Response regulator containing CheY-like receiver and SARP domains	T	BX548020	SYNW0904	COG3947	47	2e-06
Response regulator containing CheY-like receiver and SARP domains	T	BX548020	SYNW0947	COG3947	72	5e-14
Response regulator containing CheY-like receiver and SARP domains	T	BX548020	SYNW1875	COG3947	57	7e-10
Response regulator containing CheY-like receiver and SARP domains	T	BX548020	SYNW2236	COG3947	61	8e-11
Response regulator containing CheY-like receiver and SARP domains	T	BX548020	SYNW2246	COG3947	87	2e-18
Response regulator containing CheY-like receiver and SARP domains	T	BX548020	SYNW2289	COG3947	57	1e-09
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX548020	SYNW0126	COG4753	85	7e-18
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX548020	SYNW0808	COG4753	45	8e-06
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX548020	SYNW0947	COG4753	61	5e-11
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX548020	SYNW1385	COG4753	39	4e-04
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX548020	SYNW1875	COG4753	66	2e-12
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX548020	SYNW2236	COG4753	62	5e-11
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX548020	SYNW2246	COG4753	85	3e-18
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	BX548020	SYNW2289	COG4753	81	6e-17
Response regulator of citrate/malate metabolism	T	BX548020	SYNW0126	COG4565	68	9e-13
Response regulator of citrate/malate metabolism	T	BX548020	SYNW0808	COG4565	64	7e-12
Response regulator of citrate/malate metabolism	T	BX548020	SYNW0904	COG4565	44	7e-06
Response regulator of citrate/malate metabolism	T	BX548020	SYNW0947	COG4565	61	8e-11
Response regulator of citrate/malate metabolism	T	BX548020	SYNW1875	COG4565	62	4e-11
Response regulator of citrate/malate metabolism	T	BX548020	SYNW2236	COG4565	62	4e-11
Response regulator of citrate/malate metabolism	T	BX548020	SYNW2246	COG4565	70	2e-13
Response regulator of citrate/malate metabolism	T	BX548020	SYNW2289	COG4565	57	1e-09
Response regulator of the LytR/AlgR family	T	BX548020	SYNW0126	COG3279	63	1e-11
Response regulator of the LytR/AlgR family	T	BX548020	SYNW0808	COG3279	50	2e-07
Response regulator of the LytR/AlgR family	T	BX548020	SYNW0904	COG3279	39	4e-04
Response regulator of the LytR/AlgR family	T	BX548020	SYNW0947	COG3279	47	1e-06
Response regulator of the LytR/AlgR family	T	BX548020	SYNW1875	COG3279	48	5e-07
Response regulator of the LytR/AlgR family	T	BX548020	SYNW2236	COG3279	46	2e-06
Response regulator of the LytR/AlgR family	T	BX548020	SYNW2246	COG3279	62	5e-11
Response regulator of the LytR/AlgR family	T	BX548020	SYNW2289	COG3279	58	5e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW0126	COG0745	222	2e-59
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW0808	COG0745	204	5e-54
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW0904	COG0745	147	1e-36
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW0947	COG0745	248	3e-67
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW1598	COG0745	123	9e-30
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW1875	COG0745	190	8e-50
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW2236	COG0745	225	2e-60
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW2246	COG0745	232	3e-62
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	BX548020	SYNW2289	COG0745	130	1e-31
Response regulator with putative antiterminator output domain	T	BX548020	SYNW0126	COG3707	47	2e-06
Response regulator with putative antiterminator output domain	T	BX548020	SYNW0808	COG3707	42	4e-05
Response regulator with putative antiterminator output domain	T	BX548020	SYNW0904	COG3707	35	0.005
Response regulator with putative antiterminator output domain	T	BX548020	SYNW0947	COG3707	40	1e-04
Response regulator with putative antiterminator output domain	T	BX548020	SYNW1875	COG3707	40	1e-04
Response regulator with putative antiterminator output domain	T	BX548020	SYNW2236	COG3707	43	2e-05
Response regulator with putative antiterminator output domain	T	BX548020	SYNW2246	COG3707	58	5e-10
Response regulator with putative antiterminator output domain	T	BX548020	SYNW2289	COG3707	51	8e-08
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	T	BX548020	SYNW2524	COG0478	48	2e-06
Serine phosphatase RsbU regulator of sigma subunit	T	BX548020	SYNW0012	COG2208	211	7e-56
Serine/threonine protein kinase	T	BX548020	SYNW2524	COG0515	37	0.004
Signal transduction histidine kinase	T	BX548020	SYNW0246	COG0642	81	1e-16
Signal transduction histidine kinase	T	BX548020	SYNW0246	COG5002	58	1e-09
Signal transduction histidine kinase	T	BX548020	SYNW0551	COG0642	151	1e-37
Signal transduction histidine kinase	T	BX548020	SYNW0551	COG5002	215	6e-57
Signal transduction histidine kinase	T	BX548020	SYNW0753	COG0642	140	2e-34
Signal transduction histidine kinase	T	BX548020	SYNW0753	COG4585	45	8e-06
Signal transduction histidine kinase	T	BX548020	SYNW0753	COG5002	130	1e-31
Signal transduction histidine kinase	T	BX548020	SYNW0807	COG3920	35	0.010
Signal transduction histidine kinase	T	BX548020	SYNW0807	COG0642	105	7e-24
Signal transduction histidine kinase	T	BX548020	SYNW0807	COG5002	69	8e-13
Signal transduction histidine kinase	T	BX548020	SYNW0948	COG0642	153	1e-38
Signal transduction histidine kinase	T	BX548020	SYNW0948	COG4585	46	4e-06
Signal transduction histidine kinase	T	BX548020	SYNW0948	COG5002	133	2e-32
Signal transduction histidine kinase	T	BX548020	SYNW1068	COG3920	35	0.002
Signal transduction histidine kinase	T	BX548020	SYNW1068	COG4585	35	0.003
Signal transduction histidine kinase	T	BX548020	SYNW2043	COG0642	52	7e-08
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX548020	SYNW0246	COG5000	42	7e-05
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX548020	SYNW0551	COG5000	126	6e-30
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX548020	SYNW0753	COG5000	91	1e-19
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX548020	SYNW0807	COG5000	46	6e-06
Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation	T	BX548020	SYNW0948	COG5000	89	5e-19
Signal transduction histidine kinase nitrate/nitrite-specific	T	BX548020	SYNW0551	COG3850	41	3e-04
Signal transduction histidine kinase nitrogen specific	T	BX548020	SYNW0246	COG3852	56	3e-09
Signal transduction histidine kinase nitrogen specific	T	BX548020	SYNW0551	COG3852	98	1e-21
Signal transduction histidine kinase nitrogen specific	T	BX548020	SYNW0753	COG3852	95	6e-21
Signal transduction histidine kinase nitrogen specific	T	BX548020	SYNW0807	COG3852	38	0.002
Signal transduction histidine kinase nitrogen specific	T	BX548020	SYNW0948	COG3852	79	6e-16
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX548020	SYNW0246	COG4191	38	0.001
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX548020	SYNW0551	COG4191	84	4e-17
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX548020	SYNW0753	COG4191	76	3e-15
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX548020	SYNW0807	COG4191	49	8e-07
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX548020	SYNW0948	COG4191	94	2e-20
Signal transduction histidine kinase regulating C4-dicarboxylate transport system	T	BX548020	SYNW2043	COG4191	38	0.001
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX548020	SYNW0246	COG3290	49	6e-07
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX548020	SYNW0551	COG3290	63	1e-10
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX548020	SYNW0753	COG3290	65	1e-11
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX548020	SYNW0807	COG3290	43	7e-05
Signal transduction histidine kinase regulating citrate/malate metabolism	T	BX548020	SYNW0948	COG3290	65	7e-12
Signal transduction histidine kinase regulating phosphoglycerate transport system	T	BX548020	SYNW0551	COG4192	57	6e-09
Signal transduction histidine kinase regulating phosphoglycerate transport system	T	BX548020	SYNW0753	COG4192	69	8e-13
Signal transduction histidine kinase regulating phosphoglycerate transport system	T	BX548020	SYNW0948	COG4192	45	1e-05
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	T	BX548020	SYNW1044	COG1974	117	3e-28
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	T	BX548020	SYNW1582	COG1974	177	7e-46
Stress-induced morphogen (activity unknown)	T	BX548020	SYNW0907	COG0271	74	2e-15

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	T	BX548020	SYNW0327	COG3604	38	0.002
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	T	BX548020	SYNW0327	COG3829	49	1e-06
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	T	BX548020	SYNW0327	COG1221	57	4e-09
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	T	BX548020	SYNW1707	COG1221	35	0.006
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	T	BX548020	SYNW2158	COG1221	46	1e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	T	BX548020	SYNW2346	COG1221	40	0.001

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Universal stress protein UspA and related nucleotide-binding protein	T	BX548020	SYNW0925	COG0589	40	4e-04
Universal stress protein UspA and related nucleotide-binding protein	T	BX548020	SYNW1979	COG0589	53	2e-08
Universal stress protein UspA and related nucleotide-binding protein	T	BX548020	SYNW2328	COG0589	48	2e-07

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