DNA Replication, Recombination and Repair

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	BX548020	SYNW0115	COG0122	40	2e-04
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	BX548020	SYNW1342	COG0122	49	3e-07
3-methyladenine DNA glycosylase	L	BX548020	SYNW0295	COG2094	147	5e-37
5'-3' exonuclease (including N-terminal domain of PolI)	L	BX548020	SYNW0702	COG0258	212	8e-56
A/G-specific DNA glycosylase	L	BX548020	SYNW0112	COG1194	32	0.007
A/G-specific DNA glycosylase	L	BX548020	SYNW0115	COG1194	271	6e-74
A/G-specific DNA glycosylase	L	BX548020	SYNW1342	COG1194	80	1e-16
Alkylated DNA repair protein	L	BX548020	SYNW0847	COG3145	104	6e-24
ATPase involved in DNA repair	L	BX548020	SYNW0211	COG0419	43	2e-05
ATPase involved in DNA repair	L	BX548020	SYNW0217	COG0419	47	4e-06
ATPase involved in DNA repair	L	BX548020	SYNW0341	COG0497	56	1e-08
ATPase involved in DNA repair	L	BX548020	SYNW0341	COG0419	73	1e-13
ATPase involved in DNA repair	L	BX548020	SYNW0427	COG0419	38	0.002
ATPase involved in DNA repair	L	BX548020	SYNW0843	COG0419	52	4e-08
ATPase involved in DNA repair	L	BX548020	SYNW0970	COG0419	44	1e-05
ATPase involved in DNA repair	L	BX548020	SYNW1023	COG0419	37	0.004
ATPase involved in DNA repair	L	BX548020	SYNW1087	COG0419	49	2e-07
ATPase involved in DNA repair	L	BX548020	SYNW1112	COG0419	38	5e-04
ATPase involved in DNA repair	L	BX548020	SYNW1154	COG0497	38	6e-04
ATPase involved in DNA repair	L	BX548020	SYNW1154	COG0419	47	1e-06
ATPase involved in DNA repair	L	BX548020	SYNW1272	COG0419	36	0.003
ATPase involved in DNA repair	L	BX548020	SYNW1285	COG0419	44	1e-05
ATPase involved in DNA repair	L	BX548020	SYNW1335	COG0419	43	2e-05
ATPase involved in DNA repair	L	BX548020	SYNW1340	COG0419	60	1e-10
ATPase involved in DNA repair	L	BX548020	SYNW1417	COG0419	45	5e-06
ATPase involved in DNA repair	L	BX548020	SYNW1503	COG0419	42	3e-04
ATPase involved in DNA repair	L	BX548020	SYNW1544	COG0419	49	4e-07
ATPase involved in DNA repair	L	BX548020	SYNW1831	COG0419	38	5e-04
ATPase involved in DNA repair	L	BX548020	SYNW1858	COG0419	42	5e-05
ATPase involved in DNA repair	L	BX548020	SYNW1874	COG0419	49	4e-07
ATPase involved in DNA repair	L	BX548020	SYNW1915	COG0419	45	8e-06
ATPase involved in DNA repair	L	BX548020	SYNW1925	COG0419	41	3e-04
ATPase involved in DNA repair	L	BX548020	SYNW1929	COG0419	38	9e-04
ATPase involved in DNA repair	L	BX548020	SYNW2110	COG0419	35	0.007
ATPase involved in DNA repair	L	BX548020	SYNW2175	COG0419	45	1e-05
ATPase involved in DNA repair	L	BX548020	SYNW2234	COG0419	43	3e-05
ATPase involved in DNA repair	L	BX548020	SYNW2325	COG0419	45	1e-05
ATPase involved in DNA repair	L	BX548020	SYNW2346	COG0419	38	0.003
ATPase involved in DNA repair	L	BX548020	SYNW2439	COG0419	35	0.006
ATPase involved in DNA repair	L	BX548020	SYNW2480	COG0497	39	3e-04
ATPase involved in DNA repair	L	BX548020	SYNW2485	COG0419	35	0.007
ATPase involved in DNA repair	L	BX548020	SYNW2522	COG0419	50	8e-07
ATPase involved in DNA repair	L	BX548020	SYNW2523	COG0497	385	1.0e-108
ATPase involved in DNA repair	L	BX548020	SYNW2523	COG0419	44	3e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW0061	COG2256	85	2e-17
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW0063	COG2256	45	9e-06
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW0106	COG2256	33	0.007
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW0135	COG2256	91	7e-20
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW0305	COG2256	54	3e-08
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW0938	COG2256	41	3e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW1211	COG2256	49	9e-07
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW1300	COG2256	54	4e-08
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW1503	COG2256	42	2e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW1587	COG2256	50	6e-07
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW1707	COG2256	39	3e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW2158	COG2256	509	1.0e-145
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX548020	SYNW2346	COG2256	56	9e-09
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	BX548020	SYNW0181	COG0507	41	4e-04
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	BX548020	SYNW0744	COG0507	57	2e-09
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	BX548020	SYNW0918	COG0507	161	9e-41
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	BX548020	SYNW0181	COG1074	196	7e-51
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	BX548020	SYNW0917	COG1074	425	1.0e-120
ATP-dependent nuclease subunit B	L	BX548020	SYNW0181	COG3857	48	3e-06
Bacterial nucleoid DNA-binding protein	L	BX548020	SYNW0587	COG0776	103	3e-24

BASAL REPLICATION MACHINERY

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATPase involved in DNA replication	L	BX548020	SYNW0061	COG0470	51	2e-07
ATPase involved in DNA replication	L	BX548020	SYNW2237	COG0470	44	1e-05
ATPase involved in DNA replication initiation	L	BX548020	SYNW0135	COG0593	45	6e-06
ATPase involved in DNA replication initiation	L	BX548020	SYNW0305	COG0593	48	3e-06
ATPase involved in DNA replication initiation	L	BX548020	SYNW1211	COG0593	47	4e-06
ATPase involved in DNA replication initiation	L	BX548020	SYNW1300	COG0593	46	6e-06
ATPase involved in DNA replication initiation	L	BX548020	SYNW1536	COG0593	414	1.0e-117
ATPase involved in DNA replication initiation	L	BX548020	SYNW2158	COG0593	48	2e-06
ATPase involved in DNA replication initiation	L	BX548020	SYNW2346	COG0593	42	2e-04
ATP-dependent DNA ligase	L	BX548020	SYNW1321	COG1793	204	1e-53
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	BX548020	SYNW0702	COG0749	614	1.0e-176
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	BX548020	SYNW2036	COG0749	49	3e-07
DNA primase	L	BX548020	SYNW1038	COG0358	380	1.0e-106
DNA replication protein	L	BX548020	SYNW0135	COG1484	39	5e-04
DNA replication protein	L	BX548020	SYNW1211	COG1484	37	0.004
DNA replication protein	L	BX548020	SYNW1300	COG1484	39	8e-04
DNA replication protein	L	BX548020	SYNW1503	COG1484	38	0.002
DNA replication protein	L	BX548020	SYNW1536	COG1484	58	2e-09
DNA replication protein	L	BX548020	SYNW1587	COG1484	37	0.003
DNA replication protein	L	BX548020	SYNW1616	COG1484	35	0.006
DNA replication protein	L	BX548020	SYNW2064	COG1484	38	0.002
DNA replication protein	L	BX548020	SYNW2158	COG1484	38	0.002
DNA replication protein	L	BX548020	SYNW2346	COG1484	41	5e-04
NAD-dependent DNA ligase (contains BRCT domain type II)	L	BX548020	SYNW1246	COG0272	48	3e-06
NAD-dependent DNA ligase (contains BRCT domain type II)	L	BX548020	SYNW2389	COG0272	828	0.0
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX548020	SYNW0077	COG1198	49	1e-06
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX548020	SYNW0636	COG1198	45	3e-05
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX548020	SYNW0918	COG1198	36	0.006
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX548020	SYNW0920	COG1198	38	0.002
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX548020	SYNW1093	COG1198	49	1e-06
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX548020	SYNW1177	COG1198	85	2e-17
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX548020	SYNW1782	COG1198	579	1.0e-166
Replicative DNA helicase	L	BX548020	SYNW0550	COG0305	37	0.003
Replicative DNA helicase	L	BX548020	SYNW0891	COG0305	36	0.004
Replicative DNA helicase	L	BX548020	SYNW2245	COG0305	52	8e-08
Replicative DNA helicase	L	BX548020	SYNW2379	COG0305	508	1.0e-145
Ribonuclease HI	L	BX548020	SYNW2338	COG0328	147	1e-36
Ribonuclease HII	L	BX548020	SYNW2144	COG0164	193	1e-50
Ribonuclease HIII	L	BX548020	SYNW2144	COG1039	63	2e-11
Single-stranded DNA-binding protein	L	BX548020	SYNW0121	COG0629	95	2e-21
Single-stranded DNA-binding protein	L	BX548020	SYNW1777	COG0629	60	5e-11
Topoisomerase IA	L	BX548020	SYNW1872	COG0550	600	1.0e-172
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	BX548020	SYNW0005	COG0188	721	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	BX548020	SYNW0727	COG0188	937	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	BX548020	SYNW0095	COG0187	965	0.0

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW0063	COG1474	38	0.001
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW0135	COG1474	35	0.007
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW0305	COG1474	44	3e-05
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW1211	COG1474	42	1e-04
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW1300	COG1474	42	1e-04
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW1503	COG1474	37	0.006
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW1587	COG1474	42	1e-04
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW2158	COG1474	54	3e-08
Cdc6-related protein AAA superfamily ATPase	L	BX548020	SYNW2346	COG1474	45	2e-05
Deoxyribodipyrimidine photolyase	L	BX548020	SYNW0219	COG0415	452	1.0e-128
Deoxyribodipyrimidine photolyase	L	BX548020	SYNW0224	COG0415	150	1e-37
Deoxyribodipyrimidine photolyase	L	BX548020	SYNW1244	COG0415	57	3e-09
Deoxyribodipyrimidine photolyase	L	BX548020	SYNW1757	COG0415	272	4e-74
DNA methylase	L	BX548020	SYNW0165	COG4646	37	0.005
DNA mismatch repair enzyme (predicted ATPase)	L	BX548020	SYNW1278	COG0323	39	0.001
DNA or RNA helicase of superfamily II	L	BX548020	SYNW0077	COG1061	56	7e-09
DNA or RNA helicase of superfamily II	L	BX548020	SYNW0636	COG1061	74	5e-14
DNA or RNA helicase of superfamily II	L	BX548020	SYNW0689	COG1061	137	2e-33
DNA or RNA helicase of superfamily II	L	BX548020	SYNW0920	COG1061	64	2e-11
DNA or RNA helicase of superfamily II	L	BX548020	SYNW1093	COG1061	60	6e-10
DNA or RNA helicase of superfamily II	L	BX548020	SYNW1177	COG1061	57	1e-08
DNA or RNA helicase of superfamily II	L	BX548020	SYNW1268	COG1061	35	0.005
DNA or RNA helicase of superfamily II	L	BX548020	SYNW1322	COG1061	58	3e-09
DNA or RNA helicase of superfamily II	L	BX548020	SYNW1782	COG1061	52	2e-07
DNA or RNA helicase of superfamily II	L	BX548020	SYNW1958	COG1061	46	7e-06
DNA or RNA helicase of superfamily II	L	BX548020	SYNW2179	COG1061	38	0.003
DNA or RNA helicase of superfamily II	L	BX548020	SYNW2362	COG1061	63	9e-11

DNA POLYMERASE III SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA polymerase III alpha subunit	L	BX548020	SYNW1032	COG0587	1259	0.0
DNA polymerase III alpha subunit	L	BX548020	SYNW1242	COG0587	39	3e-04
DNA polymerase III alpha subunit (gram-positive type)	L	BX548020	SYNW1016	COG2176	65	4e-12
DNA polymerase III alpha subunit (gram-positive type)	L	BX548020	SYNW1032	COG2176	181	3e-46
DNA polymerase III alpha subunit (gram-positive type)	L	BX548020	SYNW1242	COG2176	42	3e-05
DNA polymerase III delta subunit	L	BX548020	SYNW0061	COG1466	62	1e-10
DNA polymerase III delta subunit	L	BX548020	SYNW0073	COG1466	124	1e-29
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	BX548020	SYNW1016	COG0847	72	5e-14
DNA polymerase III gamma/tau subunits	L	BX548020	SYNW0061	COG2812	403	1.0e-113
DNA polymerase III gamma/tau subunits	L	BX548020	SYNW0135	COG2812	43	3e-05
DNA polymerase III gamma/tau subunits	L	BX548020	SYNW2158	COG2812	74	5e-14
DNA polymerase III gamma/tau subunits	L	BX548020	SYNW2237	COG2812	85	6e-18
DNA polymerase III gamma/tau subunits	L	BX548020	SYNW2346	COG2812	37	0.007
DNA polymerase sliding clamp subunit (PCNA homolog)	L	BX548020	SYNW0001	COG0592	272	3e-74

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA repair exonuclease	L	BX548020	SYNW0768	COG0420	38	5e-04
DNA repair exonuclease	L	BX548020	SYNW0868	COG0420	50	1e-07
DNA repair exonuclease	L	BX548020	SYNW1315	COG0420	37	0.002
DNA topoisomerase VI subunit B	L	BX548020	SYNW0095	COG1389	37	0.003
DNA uptake protein and related DNA-binding protein	L	BX548020	SYNW0564	COG1555	47	8e-07
ERCC4-like helicase	L	BX548020	SYNW0077	COG1111	60	7e-10
ERCC4-like helicase	L	BX548020	SYNW0636	COG1111	49	2e-06
ERCC4-like helicase	L	BX548020	SYNW0920	COG1111	67	4e-12
ERCC4-like helicase	L	BX548020	SYNW1093	COG1111	44	3e-05
ERCC4-like helicase	L	BX548020	SYNW1177	COG1111	41	5e-04
ERCC4-like helicase	L	BX548020	SYNW1322	COG1111	36	0.008
ERCC4-like helicase	L	BX548020	SYNW1958	COG1111	44	3e-05
ERCC4-type nuclease	L	BX548020	SYNW1246	COG1948	45	2e-05
Excinuclease ATPase subunit	L	BX548020	SYNW0173	COG0178	55	1e-08
Excinuclease ATPase subunit	L	BX548020	SYNW0193	COG0178	62	2e-10
Excinuclease ATPase subunit	L	BX548020	SYNW0211	COG0178	38	5e-04
Excinuclease ATPase subunit	L	BX548020	SYNW0411	COG0178	44	7e-05
Excinuclease ATPase subunit	L	BX548020	SYNW0427	COG0178	43	6e-05
Excinuclease ATPase subunit	L	BX548020	SYNW0825	COG0178	44	2e-05
Excinuclease ATPase subunit	L	BX548020	SYNW0843	COG0178	50	2e-07
Excinuclease ATPase subunit	L	BX548020	SYNW0924	COG0178	55	2e-08
Excinuclease ATPase subunit	L	BX548020	SYNW0959	COG0178	50	9e-07
Excinuclease ATPase subunit	L	BX548020	SYNW0970	COG0178	51	9e-08
Excinuclease ATPase subunit	L	BX548020	SYNW1023	COG0178	43	5e-05
Excinuclease ATPase subunit	L	BX548020	SYNW1087	COG0178	47	1e-06
Excinuclease ATPase subunit	L	BX548020	SYNW1112	COG0178	50	1e-07
Excinuclease ATPase subunit	L	BX548020	SYNW1154	COG0178	50	1e-07
Excinuclease ATPase subunit	L	BX548020	SYNW1169	COG0178	39	3e-04
Excinuclease ATPase subunit	L	BX548020	SYNW1272	COG0178	41	8e-05
Excinuclease ATPase subunit	L	BX548020	SYNW1285	COG0178	50	2e-07
Excinuclease ATPase subunit	L	BX548020	SYNW1335	COG0178	48	7e-07
Excinuclease ATPase subunit	L	BX548020	SYNW1340	COG0178	44	1e-05
Excinuclease ATPase subunit	L	BX548020	SYNW1417	COG0178	41	1e-04
Excinuclease ATPase subunit	L	BX548020	SYNW1541	COG0178	42	1e-04
Excinuclease ATPase subunit	L	BX548020	SYNW1544	COG0178	41	2e-04
Excinuclease ATPase subunit	L	BX548020	SYNW1837	COG0178	34	0.010
Excinuclease ATPase subunit	L	BX548020	SYNW1858	COG0178	61	1e-10
Excinuclease ATPase subunit	L	BX548020	SYNW1874	COG0178	47	1e-06
Excinuclease ATPase subunit	L	BX548020	SYNW1915	COG0178	46	5e-06
Excinuclease ATPase subunit	L	BX548020	SYNW1925	COG0178	37	0.003
Excinuclease ATPase subunit	L	BX548020	SYNW2110	COG0178	56	3e-09
Excinuclease ATPase subunit	L	BX548020	SYNW2111	COG0178	61	3e-10
Excinuclease ATPase subunit	L	BX548020	SYNW2175	COG0178	38	0.002
Excinuclease ATPase subunit	L	BX548020	SYNW2234	COG0178	42	3e-05
Excinuclease ATPase subunit	L	BX548020	SYNW2325	COG0178	47	4e-06
Excinuclease ATPase subunit	L	BX548020	SYNW2438	COG0178	50	2e-07
Excinuclease ATPase subunit	L	BX548020	SYNW2439	COG0178	53	2e-08
Excinuclease ATPase subunit	L	BX548020	SYNW2480	COG0178	46	3e-06
Excinuclease ATPase subunit	L	BX548020	SYNW2485	COG0178	37	0.002
Excinuclease ATPase subunit	L	BX548020	SYNW2522	COG0178	1463	0.0
Exonuclease III	L	BX548020	SYNW1807	COG0708	295	2e-81
Exonuclease V gamma subunit	L	BX548020	SYNW0181	COG1330	50	5e-07
Exonuclease V gamma subunit	L	BX548020	SYNW0914	COG1330	395	1.0e-111
Exonuclease VII large subunit	L	BX548020	SYNW2181	COG1570	242	5e-65
Formamidopyrimidine-DNA glycosylase	L	BX548020	SYNW1961	COG0266	308	4e-85
Helicase subunit of the DNA excision repair complex	L	BX548020	SYNW0077	COG0556	1038	0.0
Helicase subunit of the DNA excision repair complex	L	BX548020	SYNW0920	COG0556	41	2e-04
Helicase subunit of the DNA excision repair complex	L	BX548020	SYNW0938	COG0556	37	0.007
Helicase subunit of the DNA excision repair complex	L	BX548020	SYNW1093	COG0556	37	0.006
Helicase subunit of the DNA excision repair complex	L	BX548020	SYNW1177	COG0556	98	3e-21
Helicase subunit of the DNA excision repair complex	L	BX548020	SYNW1246	COG0556	36	0.008
Helicase subunit of the DNA excision repair complex	L	BX548020	SYNW1782	COG0556	46	1e-05
Holliday junction resolvasome DNA-binding subunit	L	BX548020	SYNW1035	COG0632	155	3e-39
Holliday junction resolvasome endonuclease subunit	L	BX548020	SYNW0715	COG0817	151	2e-38
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW0061	COG2255	52	1e-07
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW0063	COG2255	42	6e-05
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW0106	COG2255	32	0.008
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW0135	COG2255	430	1.0e-122
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW0305	COG2255	44	4e-05
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW0327	COG2255	36	0.006
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW1211	COG2255	40	4e-04
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW1300	COG2255	44	4e-05
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW1587	COG2255	41	3e-04
Holliday junction resolvasome helicase subunit	L	BX548020	SYNW2158	COG2255	79	1e-15
HrpA-like helicase	L	BX548020	SYNW0636	COG1643	41	3e-04
HrpA-like helicase	L	BX548020	SYNW0920	COG1643	44	3e-05
HrpA-like helicase	L	BX548020	SYNW1177	COG1643	47	7e-06
HrpA-like helicase	L	BX548020	SYNW1322	COG1643	38	0.004
HrpA-like helicase	L	BX548020	SYNW2179	COG1643	558	1.0e-160
Integrase	L	BX548020	SYNW0370	COG0582	37	0.001
Integrase	L	BX548020	SYNW1144	COG0582	51	5e-08
Integrase	L	BX548020	SYNW1346	COG0582	53	1e-08
Integrase	L	BX548020	SYNW1662	COG0582	50	3e-07
Integrase	L	BX548020	SYNW1666	COG0582	50	2e-07
Integrase	L	BX548020	SYNW2099	COG0582	50	3e-07
Methylated DNA-protein cysteine methyltransferase	L	BX548020	SYNW1680	COG0350	66	5e-13
Mg-dependent DNase	L	BX548020	SYNW0612	COG0084	288	2e-79
Micrococcal nuclease (thermonuclease) homologs	L	BX548020	SYNW0348	COG1525	84	9e-18
Micrococcal nuclease (thermonuclease) homologs	L	BX548020	SYNW0801	COG1525	40	4e-05
Micrococcal nuclease (thermonuclease) homologs	L	BX548020	SYNW1578	COG1525	84	8e-18
Mismatch repair ATPase (MutS family)	L	BX548020	SYNW0078	COG1193	113	4e-26
Mismatch repair ATPase (MutS family)	L	BX548020	SYNW0078	COG0249	810	0.0
Mismatch repair ATPase (MutS family)	L	BX548020	SYNW1925	COG0249	37	0.004
Mismatch repair ATPase (MutS family)	L	BX548020	SYNW1931	COG1193	487	1.0e-138
Mismatch repair ATPase (MutS family)	L	BX548020	SYNW1931	COG0249	160	3e-40
N6-adenine-specific methylase	L	BX548020	SYNW0534	COG0742	39	6e-04
N6-adenine-specific methylase	L	BX548020	SYNW0722	COG0742	169	1e-43
N6-adenine-specific methylase	L	BX548020	SYNW1228	COG0742	46	5e-06
N6-adenine-specific methylase	L	BX548020	SYNW1596	COG0742	46	4e-06
N6-adenine-specific methylase	L	BX548020	SYNW1976	COG0742	53	3e-08
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	BX548020	SYNW0115	COG2816	36	0.006
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX548020	SYNW0115	COG0494	52	5e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX548020	SYNW0218	COG0494	42	3e-05
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX548020	SYNW1334	COG0494	33	0.006
Nuclease subunit of the excinuclease complex	L	BX548020	SYNW0077	COG0322	46	8e-06
Nuclease subunit of the excinuclease complex	L	BX548020	SYNW1246	COG0322	557	1.0e-160
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	BX548020	SYNW1043	COG0389	176	3e-45
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX548020	SYNW0327	COG1241	49	7e-07
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX548020	SYNW0716	COG1241	38	0.001
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX548020	SYNW1707	COG1241	36	0.004
Predicted ATP-dependent endonuclease of the OLD family	L	BX548020	SYNW0341	COG3593	37	0.008
Predicted ATP-dependent endonuclease of the OLD family	L	BX548020	SYNW2049	COG3593	36	0.003
Predicted ATP-dependent endonuclease of the OLD family	L	BX548020	SYNW2523	COG3593	41	2e-04
Predicted DNA modification methylase	L	BX548020	SYNW1228	COG1041	41	1e-04
Predicted DNA modification methylase	L	BX548020	SYNW1674	COG1041	38	6e-04
Predicted DNA modification methylase	L	BX548020	SYNW2141	COG1041	47	2e-06
Predicted EndoIII-related endonuclease	L	BX548020	SYNW0115	COG0177	102	4e-23
Predicted EndoIII-related endonuclease	L	BX548020	SYNW1342	COG0177	239	1e-64
Predicted endonuclease distantly related to Holliday junction resolvase	L	BX548020	SYNW1051	COG0792	81	3e-17
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)	L	BX548020	SYNW0779	COG0816	99	2e-22
Predicted methylated DNA-protein cysteine methyltransferase	L	BX548020	SYNW1680	COG3695	101	1e-23
Predicted N6-adenine-specific DNA methylase	L	BX548020	SYNW0346	COG0116	312	2e-86
Predicted N6-adenine-specific DNA methylase	L	BX548020	SYNW1228	COG0116	42	9e-05
Predicted N6-adenine-specific DNA methylase	L	BX548020	SYNW1273	COG0116	37	0.004
Predicted N6-adenine-specific DNA methylase	L	BX548020	SYNW1976	COG0116	37	0.002
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	BX548020	SYNW1818	COG0758	37	7e-04
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	BX548020	SYNW1977	COG0758	238	5e-64
Rad3-related DNA helicase	L	BX548020	SYNW0077	COG1199	39	0.001
Rad3-related DNA helicase	L	BX548020	SYNW0636	COG1199	49	2e-06
Rad3-related DNA helicase	L	BX548020	SYNW0689	COG1199	39	7e-04
Rad3-related DNA helicase	L	BX548020	SYNW0920	COG1199	39	8e-04
Rad3-related DNA helicase	L	BX548020	SYNW1958	COG1199	40	5e-04
Rad3-related DNA helicase	L	BX548020	SYNW2059	COG1199	69	8e-13
RecA-family ATPase	L	BX548020	SYNW0891	COG3598	55	1e-08
RecA-family ATPase	L	BX548020	SYNW2062	COG3598	35	0.009
RecA-family ATPase	L	BX548020	SYNW2245	COG3598	52	1e-07
RecA/RadA recombinase	L	BX548020	SYNW0550	COG0468	45	1e-05
RecA/RadA recombinase	L	BX548020	SYNW2062	COG0468	295	4e-81
RecA/RadA recombinase	L	BX548020	SYNW2245	COG0468	57	3e-09
RecB family exonuclease	L	BX548020	SYNW0236	COG1468	36	0.005
RecG-like helicase	L	BX548020	SYNW0077	COG1200	48	3e-06
RecG-like helicase	L	BX548020	SYNW0636	COG1200	40	7e-04
RecG-like helicase	L	BX548020	SYNW0920	COG1200	63	8e-11
RecG-like helicase	L	BX548020	SYNW1093	COG1200	747	0.0
RecG-like helicase	L	BX548020	SYNW1177	COG1200	365	1.0e-101
RecG-like helicase	L	BX548020	SYNW1782	COG1200	40	5e-04
RecG-like helicase	L	BX548020	SYNW1958	COG1200	38	0.002
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	BX548020	SYNW0024	COG1107	40	3e-04
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	BX548020	SYNW1206	COG1107	55	2e-08
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	BX548020	SYNW1897	COG1107	36	0.008
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	BX548020	SYNW1985	COG1107	35	0.007
Recombinational DNA repair ATPase (RecF pathway)	L	BX548020	SYNW0341	COG1195	45	3e-05
Recombinational DNA repair ATPase (RecF pathway)	L	BX548020	SYNW0970	COG1195	34	0.008
Recombinational DNA repair ATPase (RecF pathway)	L	BX548020	SYNW2049	COG1195	287	1e-78
Recombinational DNA repair ATPase (RecF pathway)	L	BX548020	SYNW2523	COG1195	49	7e-07
Recombinational DNA repair protein (RecF pathway)	L	BX548020	SYNW0665	COG1381	81	1e-16
Recombinational DNA repair protein (RecF pathway)	L	BX548020	SYNW0928	COG0353	259	8e-71
Reverse gyrase	L	BX548020	SYNW0077	COG1110	40	4e-04
Reverse gyrase	L	BX548020	SYNW0920	COG1110	45	1e-05
Reverse gyrase	L	BX548020	SYNW1093	COG1110	44	6e-05
Reverse gyrase	L	BX548020	SYNW1177	COG1110	38	0.003
Reverse gyrase	L	BX548020	SYNW1782	COG1110	37	0.004
Reverse gyrase	L	BX548020	SYNW1872	COG1110	277	3e-75
Serine/threonine protein kinase	L	BX548020	SYNW2524	COG0515	37	0.004
Single-stranded DNA-specific exonuclease	L	BX548020	SYNW1206	COG0608	327	1e-90
Site-specific recombinase DNA invertase Pin homologs	L	BX548020	SYNW1108	COG1961	40	4e-04
Site-specific recombinase DNA invertase Pin homologs	L	BX548020	SYNW1351	COG1961	41	4e-04
Site-specific recombinase XerC	L	BX548020	SYNW0370	COG4973	71	7e-14
Site-specific recombinase XerC	L	BX548020	SYNW0880	COG4973	40	5e-04
Site-specific recombinase XerC	L	BX548020	SYNW1144	COG4973	39	3e-04
Site-specific recombinase XerC	L	BX548020	SYNW1346	COG4973	50	1e-07
Site-specific recombinase XerD	L	BX548020	SYNW0370	COG4974	100	1e-22
Site-specific recombinase XerD	L	BX548020	SYNW1144	COG4974	56	2e-09
Site-specific recombinase XerD	L	BX548020	SYNW1346	COG4974	73	2e-14
Site-specific recombinase XerD	L	BX548020	SYNW1666	COG4974	43	2e-05
Superfamily I DNA and RNA helicase and helicase subunits	L	BX548020	SYNW0744	COG1112	39	8e-04
Superfamily I DNA and RNA helicase and helicase subunits	L	BX548020	SYNW0918	COG1112	45	2e-05
Superfamily I DNA and RNA helicase	L	BX548020	SYNW0181	COG0210	563	1.0e-161
Superfamily I DNA and RNA helicase	L	BX548020	SYNW0917	COG0210	121	4e-28
Superfamily I DNA and RNA helicase	L	BX548020	SYNW0918	COG0210	41	2e-04
Superfamily II DNA and RNA helicase	L	BX548020	SYNW0077	COG0513	66	1e-11
Superfamily II DNA and RNA helicase	L	BX548020	SYNW0636	COG0513	57	4e-09
Superfamily II DNA and RNA helicase	L	BX548020	SYNW0689	COG0513	41	2e-04
Superfamily II DNA and RNA helicase	L	BX548020	SYNW0920	COG0513	418	1.0e-118
Superfamily II DNA and RNA helicase	L	BX548020	SYNW1093	COG0513	64	5e-11
Superfamily II DNA and RNA helicase	L	BX548020	SYNW1177	COG0513	67	7e-12
Superfamily II DNA and RNA helicase	L	BX548020	SYNW1322	COG0513	108	2e-24
Superfamily II DNA and RNA helicase	L	BX548020	SYNW1782	COG0513	41	4e-04
Superfamily II DNA and RNA helicase	L	BX548020	SYNW1958	COG0513	102	6e-23
Superfamily II DNA and RNA helicase	L	BX548020	SYNW2179	COG0513	76	9e-15
Superfamily II DNA and RNA helicase	L	BX548020	SYNW2362	COG0513	37	0.006
Superfamily II DNA helicase	L	BX548020	SYNW0077	COG0514	53	6e-08
Superfamily II DNA helicase	L	BX548020	SYNW0636	COG0514	46	1e-05
Superfamily II DNA helicase	L	BX548020	SYNW0920	COG0514	92	1e-19
Superfamily II DNA helicase	L	BX548020	SYNW1093	COG0514	53	1e-07
Superfamily II DNA helicase	L	BX548020	SYNW1177	COG0514	62	2e-10
Superfamily II DNA helicase	L	BX548020	SYNW1322	COG0514	65	3e-11
Superfamily II DNA helicase	L	BX548020	SYNW1782	COG0514	38	0.002
Superfamily II DNA helicase	L	BX548020	SYNW1958	COG0514	412	1.0e-116
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX548020	SYNW0077	COG4098	57	3e-09
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX548020	SYNW0920	COG4098	43	6e-05
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX548020	SYNW1093	COG4098	62	2e-10
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX548020	SYNW1177	COG4098	85	2e-17
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX548020	SYNW1782	COG4098	54	3e-08
Superfamily II DNA/RNA helicase SNF2 family	L	BX548020	SYNW0039	COG0553	114	1e-26
Superfamily II DNA/RNA helicase SNF2 family	L	BX548020	SYNW2362	COG0553	328	1e-90
Superfamily II RNA helicase	L	BX548020	SYNW0636	COG4581	643	0.0
Superfamily II RNA helicase	L	BX548020	SYNW1177	COG4581	51	4e-07
Superfamily II RNA helicase	L	BX548020	SYNW1322	COG4581	57	7e-09
Superfamily II RNA helicase	L	BX548020	SYNW1958	COG4581	38	0.002
Transcription-repair coupling factor (superfamily II helicase)	L	BX548020	SYNW0077	COG1197	130	3e-31
Transcription-repair coupling factor (superfamily II helicase)	L	BX548020	SYNW0920	COG1197	46	8e-06
Transcription-repair coupling factor (superfamily II helicase)	L	BX548020	SYNW1093	COG1197	329	6e-91
Transcription-repair coupling factor (superfamily II helicase)	L	BX548020	SYNW1177	COG1197	1151	0.0
Transcription-repair coupling factor (superfamily II helicase)	L	BX548020	SYNW1782	COG1197	40	5e-04
Uncharacterized protein related to Endonuclease III	L	BX548020	SYNW0115	COG2231	37	0.002
Uncharacterized protein related to Endonuclease III	L	BX548020	SYNW1342	COG2231	62	3e-11
Uracil-DNA glycosylase	L	BX548020	SYNW1173	COG1573	161	4e-41

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