Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 4 |
| Arg | 4 |
| Asn | 1 |
| Asp | 1 |
| Cys | 2 |
| Gln | 1 |
| Glu | 1 |
| Gly | 3 |
| His | 1 |
| Ile | 2 |
| Leu | 4 |
| Lys | 1 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig52 | 34 | 1400831..1400759 | 0..0 | 78.13 | 57.54 |
| Ala | GGC | Contig52 | 9 | 1013280..1013352 | 0..0 | 86.12 | 68.37 |
| Ala | TGC | Contig52 | 18 | 1682946..1683021 | 0..0 | 99.31 | 82.14 |
| Ala | TGC | Contig52 | 39 | 1075270..1075195 | 0..0 | 99.31 | 82.14 |
| Arg | ACG | Contig52 | 40 | 796229 ..796156 | 0..0 | 75.39 | 52.75 |
| Arg | CCG | Contig52 | 3 | 735005 ..735077 | 0..0 | 73.69 | 55.18 |
| Arg | CCT | Contig52 | 33 | 1537583..1537510 | 0..0 | 72.31 | 46.73 |
| Arg | TCT | Contig52 | 4 | 760278 ..760353 | 0..0 | 76.79 | 57.94 |
| Asn | GTT | Contig52 | 35 | 1200395..1200324 | 0..0 | 78.88 | 56.40 |
| Asp | GTC | Contig52 | 11 | 1039787..1039860 | 0..0 | 76.28 | 60.51 |
| Cys | GCA | Contig52 | 12 | 1233881..1233951 | 0..0 | 67.08 | 38.86 |
| Cys | GCA | Contig52 | 13 | 1236539..1236612 | 0..0 | 44.39 | 27.94 |
| Gln | TTG | Contig52 | 20 | 1732971..1733042 | 0..0 | 63.15 | 33.26 |
| Glu | TTC | Contig52 | 2 | 612779 ..612851 | 0..0 | 57.45 | 33.23 |
| Gly | CCC | Contig52 | 44 | 39565 ..39494 | 0..0 | 73.66 | 47.73 |
| Gly | GCC | Contig52 | 41 | 726422 ..726351 | 0..0 | 77.98 | 50.46 |
| Gly | TCC | Contig52 | 16 | 1667817..1667887 | 0..0 | 68.12 | 45.49 |
| His | GTG | Contig52 | 5 | 850189 ..850264 | 0..0 | 66.67 | 44.93 |
| Ile | GAT | Contig52 | 17 | 1682839..1682915 | 0..0 | 83.05 | 57.48 |
| Ile | GAT | Contig52 | 38 | 1075377..1075301 | 0..0 | 83.05 | 57.48 |
| Leu | CAA | Contig52 | 22 | 1823825..1823911 | 0..0 | 69.89 | 41.78 |
| Leu | CAG | Contig52 | 32 | 1822291..1822208 | 0..0 | 60.57 | 26.73 |
| Leu | GAG | Contig52 | 29 | 2533918..2533837 | 0..0 | 54.23 | 26.26 |
| Leu | TAG | Contig52 | 7 | 930672 ..930753 | 0..0 | 67.91 | 40.96 |
| Lys | TTT | Contig52 | 27 | 2609503..2609574 | 0..0 | 77.34 | 52.28 |
| Met | CAT | Contig52 | 14 | 1279131..1279207 | 0..0 | 85.31 | 64.44 |
| Met | CAT | Contig52 | 19 | 1700315..1700386 | 0..0 | 71.30 | 48.10 |
| Met | CAT | Contig52 | 36 | 1093374..1093302 | 0..0 | 43.00 | 13.93 |
| Phe | GAA | Contig52 | 6 | 895209 ..895281 | 0..0 | 83.54 | 62.05 |
| Pro | CGG | Contig52 | 15 | 1332526..1332599 | 0..0 | 83.53 | 59.04 |
| Pro | GGG | Contig52 | 31 | 2283374..2283301 | 0..0 | 73.77 | 52.30 |
| Pro | TGG | Contig52 | 26 | 2287568..2287641 | 0..0 | 79.94 | 59.34 |
| Ser | CGA | Contig52 | 8 | 955092 ..955178 | 0..0 | 60.62 | 33.83 |
| Ser | GCT | Contig52 | 42 | 697984 ..697896 | 0..0 | 70.60 | 33.73 |
| Ser | GGA | Contig52 | 37 | 1083620..1083534 | 0..0 | 68.73 | 33.28 |
| Ser | TGA | Contig52 | 1 | 441977 ..442061 | 0..0 | 67.04 | 28.06 |
| Thr | CGT | Contig52 | 43 | 502219 ..502148 | 0..0 | 86.40 | 65.31 |
| Thr | GGT | Contig52 | 25 | 2035842..2035916 | 0..0 | 80.47 | 52.44 |
| Thr | TGT | Contig52 | 23 | 2020930..2021001 | 0..0 | 76.51 | 60.68 |
| Trp | CCA | Contig52 | 10 | 1039508..1039580 | 0..0 | 77.93 | 56.94 |
| Tyr | GTA | Contig52 | 24 | 2035750..2035834 | 0..0 | 55.30 | 30.24 |
| Val | CAC | Contig52 | 30 | 2361150..2361076 | 0..0 | 80.37 | 58.40 |
| Val | GAC | Contig52 | 28 | 2669845..2669916 | 0..0 | 66.72 | 39.48 |
| Val | TAC | Contig52 | 21 | 1786040..1786111 | 0..0 | 76.08 | 55.01 |
tRNA Models
Contig52.trna1 (441977-442061) Length: 85 bp
Type: Ser Anticodon: TGA at 35-37 (442011-442013) Score: 67.04
HMM Sc=28.06 Sec struct Sc=38.98
* | * | * | * | * | * | * | * |
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCGAACGACTTGAAATCGTTTGAACCGCAAGGTTCCGTGGGTTCGAATCCCACCCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig52.trna2 (612779-612851) Length: 73 bp
Type: Glu Anticodon: TTC at 35-37 (612813-612815) Score: 57.45
HMM Sc=33.23 Sec struct Sc=24.22
* | * | * | * | * | * | * |
Seq: GCCCCCATCGTCTAGAGGCctAGGACACCTCCCTTTCACGGAGGCGACAGGGGTTCGAATCCCCTTGGGGGTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig52.trna3 (735005-735077) Length: 73 bp
Type: Arg Anticodon: CCG at 34-36 (735038-735040) Score: 73.69
HMM Sc=55.18 Sec struct Sc=18.51
* | * | * | * | * | * | * |
Seq: GGGCATGTAGCTCAGTGGAtAGAGCATCAGATTCCGGTTCTGAGAGtCGGGGGTTCGAATCCCTCCATGCTCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna4 (760278-760353) Length: 76 bp
Type: Arg Anticodon: TCT at 34-36 (760311-760313) Score: 76.79
HMM Sc=57.94 Sec struct Sc=18.85
* | * | * | * | * | * | * | *
Seq: GCCTCAGTAGCTCAGTGGAtAGAGCACCCGCCTTCTAAGCGGTCGGtCGTTGGTTCGATCCCAACCTGAGGCGTCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig52.trna5 (850189-850264) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (850222-850224) Score: 66.67
HMM Sc=44.93 Sec struct Sc=21.74
* | * | * | * | * | * | * | *
Seq: GCGAGCGTAGCCAAGTGGTtAAGGCAGCGGATTGTGGTTCCGCCATtCGGGGGTTCGAGTCCCCTCGTTCGCCCTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna6 (895209-895281) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (895242-895244) Score: 83.54
HMM Sc=62.05 Sec struct Sc=21.49
* | * | * | * | * | * | * |
Seq: GCCGGGATAGCTCAGTTGGTAGAGCAGAGGACTGAAAATCCTCGTGtCACCGGTTCAAGTCCGGTTCCTGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna7 (930672-930753) Length: 82 bp
Type: Leu Anticodon: TAG at 35-37 (930706-930708) Score: 67.91
HMM Sc=40.96 Sec struct Sc=26.95
* | * | * | * | * | * | * | * |
Seq: GCGGACGTGGCGGAATTGGCaGACGCGCCAGATTTAGGTTCTGGTACCGCAAGGTGTGAAGGTTCAAGTCCTTTCGTCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
Contig52.trna8 (955092-955178) Length: 87 bp
Type: Ser Anticodon: CGA at 35-37 (955126-955128) Score: 60.62
HMM Sc=33.83 Sec struct Sc=26.79
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCGCCTCACTCGAAATGAGGTTCGGGGTAAcaGCCGACGTGGGTTCGAATCCCACCCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>........<<<..>>>>>.......<<<<<<<<<<<<.
Contig52.trna9 (1013280-1013352) Length: 73 bp
Type: Ala Anticodon: GGC at 34-36 (1013313-1013315) Score: 86.12
HMM Sc=68.37 Sec struct Sc=17.75
* | * | * | * | * | * | * |
Seq: GGGGCTATAGCTCAGTTGGTAGAGCACTTGCATGGCATGCAAGGGGtCACCGGTTCGAGTCCGGTTAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna10 (1039508-1039580) Length: 73 bp
Type: Trp Anticodon: CCA at 34-36 (1039541-1039543) Score: 77.93
HMM Sc=56.94 Sec struct Sc=20.99
* | * | * | * | * | * | * |
Seq: GCGCTCTTAGTTCAGTTGGTAGAACGCAGGTCTCCAAAACCTGATGtCGGGGGTTCAAGTCCTCCAGGGCGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna11 (1039787-1039860) Length: 74 bp
Type: Asp Anticodon: GTC at 35-37 (1039821-1039823) Score: 76.28
HMM Sc=60.51 Sec struct Sc=15.77
* | * | * | * | * | * | * |
Seq: GGGACTGTAGTTCAATCGGTtAGAGCACCGCCCTGTCACGGCGGAAGtTGCGGGTTCGAGCCCCGTCAGTCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna12 (1233881-1233951) Length: 71 bp
Type: Cys Anticodon: GCA at 33-35 (1233913-1233915) Score: 67.08
HMM Sc=38.86 Sec struct Sc=28.22
* | * | * | * | * | * | * |
Seq: GGCGGCATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTCACCCCCGGTTCGAATCCGGGTGCCGCCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig52.trna13 (1236539-1236612) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (1236571-1236573) Score: 44.39
HMM Sc=27.94 Sec struct Sc=16.45
* | * | * | * | * | * | * |
Seq: GGCAGCATAACCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTCGcCTCCGGTTCGAATCCGAGTGCCGCCTTCA
Str: >>>.>>>...>>.........<<..>>>>>.......<<<<<....>.>>>.......<<<.<<<<.<<<....
Contig52.trna14 (1279131-1279207) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1279165-1279167) Score: 85.31
HMM Sc=64.44 Sec struct Sc=20.87
* | * | * | * | * | * | * | *
Seq: CGCGGGGTAGAGCAGCCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCAGAGGTTCAAATCCTCTCCCCGCCACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig52.trna15 (1332526-1332599) Length: 74 bp
Type: Pro Anticodon: CGG at 35-37 (1332560-1332562) Score: 83.53
HMM Sc=59.04 Sec struct Sc=24.49
* | * | * | * | * | * | * |
Seq: CGGGATGTAGCGCAGCTtGGTAGCGCACTTCGTTCGGGACGAAGGGGtCGCAGGTTCGAATCCTGTCATCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna16 (1667817-1667887) Length: 71 bp
Type: Gly Anticodon: TCC at 33-35 (1667849-1667851) Score: 68.12
HMM Sc=45.49 Sec struct Sc=22.63
* | * | * | * | * | * | * |
Seq: GCGGGCTTAGTTTAGTGGTAAAACCTTAGCCTTCCAAGCTAATGATGCGGGTTCGATTCCCGCAGCCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig52.trna17 (1682839-1682915) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (1682873-1682875) Score: 83.05
HMM Sc=57.48 Sec struct Sc=25.57
* | * | * | * | * | * | * | *
Seq: GGGCTATTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCCCTGGTTCAAGTCCAGGATGGCCCACCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna18 (1682946-1683021) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (1682979-1682981) Score: 99.31
HMM Sc=82.14 Sec struct Sc=17.17
* | * | * | * | * | * | * | *
Seq: GGGGGTTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGtCAGCGGTTCGAGTCCGCTAACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna19 (1700315-1700386) Length: 72 bp
Type: Met Anticodon: CAT at 33-35 (1700347-1700349) Score: 71.30
HMM Sc=48.10 Sec struct Sc=23.20
* | * | * | * | * | * | * |
Seq: GGCTCAGTAGCTCAGCGGTAGAGCAGGGGACTCATAAGCCCTTGGtCGCGTGTTCAAATCACGCCTGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>.........<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna20 (1732971-1733042) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (1733003-1733005) Score: 63.15
HMM Sc=33.26 Sec struct Sc=29.89
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGCCAAGCGGTAAGGCAGCGGATTTTGGTTCCGCCATtCCTAGGTTCGAATCCTAGCGCCCCAG
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna21 (1786040-1786111) Length: 72 bp
Type: Val Anticodon: TAC at 33-35 (1786072-1786074) Score: 76.08
HMM Sc=55.01 Sec struct Sc=21.07
* | * | * | * | * | * | * |
Seq: GGGCGCTTAACTCAGCGGTAGAGTGGCTGCCTTACAAGCAGTAAGtCACTGGTTCGAATCCAGTAGTGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna22 (1823825-1823911) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (1823859-1823861) Score: 69.89
HMM Sc=41.78 Sec struct Sc=28.11
* | * | * | * | * | * | * | * | *
Seq: GGGCAAGTGGCGGAATTGGTaGACGCAGCAGACTCAAAATCTGCCGCTAGCGATAGTGTGTGGGTTCGAGTCCCACCTTGCCCATCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<....
Contig52.trna23 (2020930-2021001) Length: 72 bp
Type: Thr Anticodon: TGT at 33-35 (2020962-2020964) Score: 76.51
HMM Sc=60.68 Sec struct Sc=15.83
* | * | * | * | * | * | * |
Seq: GCCGGTGTAGCTCAGGGGTAGAGCAGCTGTTTTGTAAACAGCCGGtCGCAGGTTCGAATCCGGTCACCGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<.
Contig52.trna24 (2035750-2035834) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (2035784-2035786) Score: 55.30
HMM Sc=30.24 Sec struct Sc=25.06
* | * | * | * | * | * | * | * |
Seq: GGGTCGATGCCCGAGTGGTtaATGGGGGTGGACTGTAAATCCACTGGCTACGCCTaCGCTGGTTCGAATCCAGCTCGGCCCACCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>.>..<.<...>>>>>.......<<<<<<<<<<<<....
Contig52.trna25 (2035842-2035916) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (2035874-2035876) Score: 80.47
HMM Sc=52.44 Sec struct Sc=28.03
* | * | * | * | * | * | * |
Seq: GCCCTTATAGCTCAGCGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCACGAGTTCAAGTCTCGTTAAGGGCTCTA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna26 (2287568-2287641) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (2287602-2287604) Score: 79.94
HMM Sc=59.34 Sec struct Sc=20.60
* | * | * | * | * | * | * |
Seq: CGGGATGTAGCGCAGCTtGGTAGCGCGCCTGCTTTGGGAGCAGGATGcCGCAGGTTCAAATCCTGTCATCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna27 (2609503-2609574) Length: 72 bp
Type: Lys Anticodon: TTT at 33-35 (2609535-2609537) Score: 77.34
HMM Sc=52.28 Sec struct Sc=25.06
* | * | * | * | * | * | * |
Seq: GGGTCGCTAGCTCAGCGGTAGAGCACTCGGCTTTTAACCGATTGGtCCTGGGTTCGAATCCCAGGCGACCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.
Contig52.trna28 (2669845-2669916) Length: 72 bp
Type: Val Anticodon: GAC at 33-35 (2669877-2669879) Score: 66.72
HMM Sc=39.48 Sec struct Sc=27.24
* | * | * | * | * | * | * |
Seq: GGGCGATTAACTCAGGGGTAGAGTACCACCATGACAAGGTGGGAGcCACTGGTTCAAATCCAGTATCGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna29 (2533918-2533837) Length: 82 bp
Type: Leu Anticodon: GAG at 35-37 (2533884-2533882) Score: 54.23
HMM Sc=26.26 Sec struct Sc=27.97
* | * | * | * | * | * | * | * |
Seq: GCGGATGTGGTGGAATTGGTaGACACGCACGTTTGAGGGGCGTGTGGCTTACGCCATGCGAGTTCAAGTCTCGCCATCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
Contig52.trna30 (2361150-2361076) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (2361118-2361116) Score: 80.37
HMM Sc=58.40 Sec struct Sc=21.97
* | * | * | * | * | * | * |
Seq: GGGCGATTAGCACAGTGGTAGCGCACTTCCTTCACACGGAAGGGGtCACTGGTTCGAATCCAGTATCGCCCATCA
Str: >>>>>>>..>>.>.......<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna31 (2283374-2283301) Length: 74 bp
Type: Pro Anticodon: GGG at 35-37 (2283340-2283338) Score: 73.77
HMM Sc=52.30 Sec struct Sc=21.47
* | * | * | * | * | * | * |
Seq: CGGGGCGTAGCGCAGCTtGGTAGCGCACCACTTTGGGGTAGTGGGGGtCGTGGGTTCAAATCCCGCCGCTCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna32 (1822291-1822208) Length: 84 bp
Type: Leu Anticodon: CAG at 35-37 (1822257-1822255) Score: 60.57
HMM Sc=26.73 Sec struct Sc=33.84
* | * | * | * | * | * | * | * |
Seq: GCGGAACTGGCGGAATTGGTaGACGCGCTAGATTCAGGTTCTAGTGGTTTCACGACTgTCCGGGTTCAAGTCCCGGGTTCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig52.trna33 (1537583-1537510) Length: 74 bp
Type: Arg Anticodon: CCT at 35-37 (1537549-1537547) Score: 72.31
HMM Sc=46.73 Sec struct Sc=25.58
* | * | * | * | * | * | * |
Seq: GGGGCTGTAGCTCAGCTGGAtAGAGCAAGCGCCTCCTAAGCGCTAGGcCGCGCGTTCAAATCGCGCCAGTCCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna34 (1400831-1400759) Length: 73 bp
Type: Ala Anticodon: CGC at 34-36 (1400798-1400796) Score: 78.13
HMM Sc=57.54 Sec struct Sc=20.59
* | * | * | * | * | * | * |
Seq: GGGGCTATAGCTCAGTTGGTAGAGCGTACGGATCGCACCCGTAAGGcCAGGGGTTCGAATCCCCTTAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna35 (1200395-1200324) Length: 72 bp
Type: Asn Anticodon: GTT at 33-35 (1200363-1200361) Score: 78.88
HMM Sc=56.40 Sec struct Sc=22.48
* | * | * | * | * | * | * |
Seq: TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGtCGCAGGTTCGAATCCTGCCTGGGGAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna36 (1093374-1093302) Length: 73 bp
Type: Met Anticodon: CAT at 34-36 (1093341-1093339) Score: 43.00
HMM Sc=13.93 Sec struct Sc=29.07
* | * | * | * | * | * | * |
Seq: CCAGGGTTGGCCGAGCGGAtTAGGCAGCGAACTCATAATTCGCTTTaGGCGGGTTCAACTCCTGCACCCTGGA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna37 (1083620-1083534) Length: 87 bp
Type: Ser Anticodon: GGA at 35-37 (1083586-1083584) Score: 68.73
HMM Sc=33.28 Sec struct Sc=35.45
* | * | * | * | * | * | * | * | *
Seq: GGAGAGATGGCCGAGCGGTtgAAGGCGCAGCACTGGAAATGCTGTTTAGGGGTAACTCTAACGAGGGTTCGAATCCCTCTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.
Contig52.trna38 (1075377-1075301) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (1075343-1075341) Score: 83.05
HMM Sc=57.48 Sec struct Sc=25.57
* | * | * | * | * | * | * | *
Seq: GGGCTATTAGCTCAGGTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCCCTGGTTCAAGTCCAGGATGGCCCACCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna39 (1075270-1075195) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (1075237-1075235) Score: 99.31
HMM Sc=82.14 Sec struct Sc=17.17
* | * | * | * | * | * | * | *
Seq: GGGGGTTTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGtCAGCGGTTCGAGTCCGCTAACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig52.trna40 (796229-796156) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (796195-796193) Score: 75.39
HMM Sc=52.75 Sec struct Sc=22.64
* | * | * | * | * | * | * |
Seq: GGGTTTGTAGCTCAGTGGAttAGAGCATTTGACTACGGATCAAAGGGtCGGGGGTTCGAATCCCTCCAAACCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna41 (726422-726351) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (726390-726388) Score: 77.98
HMM Sc=50.46 Sec struct Sc=27.52
* | * | * | * | * | * | * |
Seq: GCGGGTATAGCTCAGTGGTAGAGCGTCACCTTGCCAAGGTGAATGtCGCGCGTTCGAATCGCGTTACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna42 (697984-697896) Length: 89 bp
Type: Ser Anticodon: GCT at 35-37 (697950-697948) Score: 70.60
HMM Sc=33.73 Sec struct Sc=36.87
* | * | * | * | * | * | * | * | *
Seq: GGAGAGATGGCTGAGTGGTcgAAAGCAGCACATTGCTAATGTGCCGAGTCGTGTACGCGGCTCCGAGGGTTCGAATCCCTCTCTCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig52.trna43 (502219-502148) Length: 72 bp
Type: Thr Anticodon: CGT at 33-35 (502187-502185) Score: 86.40
HMM Sc=65.31 Sec struct Sc=21.09
* | * | * | * | * | * | * |
Seq: GCCGATGTAGCTCAGTGGTAGAGCACTCGATTCGTAATCGAGCGGtCAGGGGTTCAAATCCCCTCATCGGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig52.trna44 (39565-39494) Length: 72 bp
Type: Gly Anticodon: CCC at 33-35 (39533-39531) Score: 73.66
HMM Sc=47.73 Sec struct Sc=25.93
* | * | * | * | * | * | * |
Seq: GCGGGCGTAATTCAGTGGTAGAATGTCAGCTTCCCAAGCTGAACGtCGTGGGTTCGAGTCCCATCGCCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
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