Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 4 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 3 |
| Gly | 4 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 2 |
| Met | 4 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| SeC | 1 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 4 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig2819 | 7 | 830937 ..831013 | 0..0 | 84.90 | 65.57 |
| Ala | GGC | Contig2819 | 10 | 1106829..1106904 | 0..0 | 83.57 | 64.00 |
| Ala | TGC | Contig2819 | 2 | 14629 ..14704 | 0..0 | 80.76 | 58.10 |
| Arg | ACG | Contig2819 | 29 | 4687582..4687657 | 0..0 | 77.14 | 58.23 |
| Arg | CCG | Contig2819 | 27 | 4190586..4190660 | 0..0 | 85.39 | 64.83 |
| Arg | CCT | Contig2819 | 48 | 631372 ..631297 | 0..0 | 76.00 | 54.98 |
| Arg | TCT | Contig2819 | 26 | 4078954..4079026 | 0..0 | 78.59 | 59.20 |
| Asn | GTT | Contig2819 | 43 | 3925148..3925076 | 0..0 | 75.11 | 41.87 |
| Asp | GTC | Contig2819 | 33 | 5030917..5030841 | 0..0 | 75.46 | 50.58 |
| Cys | GCA | Contig2819 | 18 | 1788706..1788776 | 0..0 | 65.02 | 42.51 |
| Gln | CTG | Contig2819 | 14 | 1418924..1418995 | 0..0 | 54.66 | 24.28 |
| Gln | TTG | Contig2819 | 8 | 875429 ..875500 | 0..0 | 50.82 | 23.09 |
| Glu | CTC | Contig2819 | 15 | 1419095..1419167 | 0..0 | 61.64 | 39.75 |
| Glu | CTC | Contig2819 | 16 | 1419332..1419404 | 0..0 | 61.64 | 39.75 |
| Glu | TTC | Contig2819 | 32 | 5031016..5030944 | 0..0 | 60.90 | 37.67 |
| Gly | CCC | Contig2819 | 3 | 67524 ..67597 | 0..0 | 82.77 | 62.44 |
| Gly | GCC | Contig2819 | 17 | 1788599..1788671 | 0..0 | 87.87 | 65.98 |
| Gly | GCC | Contig2819 | 20 | 1789375..1789447 | 0..0 | 87.87 | 65.98 |
| Gly | TCC | Contig2819 | 25 | 4021118..4021191 | 0..0 | 82.20 | 61.59 |
| His | GTG | Contig2819 | 12 | 1270726..1270801 | 0..0 | 79.62 | 60.08 |
| Ile | GAT | Contig2819 | 1 | 13654 ..13730 | 0..0 | 87.85 | 62.40 |
| Leu | CAA | Contig2819 | 24 | 3618390..3618466 | 0..0 | 42.84 | 17.61 |
| Leu | CAG | Contig2819 | 50 | 48925 ..48840 | 0..0 | 72.90 | 44.30 |
| Leu | GAG | Contig2819 | 46 | 3325305..3325222 | 0..0 | 57.16 | 31.67 |
| Leu | TAA | Contig2819 | 9 | 1012577..1012660 | 0..0 | 65.40 | 35.33 |
| Leu | TAG | Contig2819 | 47 | 1260453..1260367 | 0..0 | 71.93 | 48.47 |
| Lys | CTT | Contig2819 | 13 | 1274262..1274337 | 0..0 | 88.68 | 61.99 |
| Lys | TTT | Contig2819 | 11 | 1183092..1183166 | 0..0 | 84.38 | 59.37 |
| Met | CAT | Contig2819 | 38 | 4494892..4494820 | 0..0 | 74.95 | 57.91 |
| Met | CAT | Contig2819 | 40 | 4270874..4270801 | 0..0 | 79.35 | 55.95 |
| Met | CAT | Contig2819 | 41 | 4269923..4269850 | 0..0 | 79.35 | 55.95 |
| Met | CAT | Contig2819 | 44 | 3921365..3921289 | 0..0 | 93.36 | 75.30 |
| Phe | GAA | Contig2819 | 34 | 5030741..5030668 | 0..0 | 79.97 | 58.23 |
| Pro | CGG | Contig2819 | 30 | 4936175..4936251 | 0..0 | 88.93 | 65.55 |
| Pro | GGG | Contig2819 | 23 | 2206283..2206356 | 0..0 | 77.33 | 55.66 |
| Pro | TGG | Contig2819 | 42 | 4020841..4020768 | 0..0 | 78.37 | 57.84 |
| SeC | TCA | Contig2819 | 6 | 655708 ..655803 | 0..0 | 37.78 | 0.00 |
| Ser | CGA | Contig2819 | 4 | 234086 ..234172 | 0..0 | 63.33 | 24.64 |
| Ser | GCT | Contig2819 | 28 | 4687456..4687546 | 0..0 | 64.15 | 32.09 |
| Ser | GGA | Contig2819 | 49 | 242083 ..241999 | 0..0 | 57.27 | 23.14 |
| Ser | TGA | Contig2819 | 31 | 5062372..5062286 | 0..0 | 53.76 | 24.94 |
| Thr | CGT | Contig2819 | 36 | 4565287..4565214 | 0..0 | 85.60 | 62.39 |
| Thr | GGT | Contig2819 | 37 | 4494989..4494917 | 0..0 | 74.94 | 46.28 |
| Thr | TGT | Contig2819 | 35 | 4785251..4785175 | 0..0 | 88.10 | 69.84 |
| Trp | CCA | Contig2819 | 39 | 4493441..4493369 | 0..0 | 75.77 | 52.67 |
| Tyr | GTA | Contig2819 | 5 | 470769 ..470852 | 0..0 | 67.18 | 38.85 |
| Val | CAC | Contig2819 | 22 | 1822362..1822436 | 0..0 | 79.54 | 55.21 |
| Val | GAC | Contig2819 | 19 | 1788789..1788863 | 0..0 | 86.83 | 62.32 |
| Val | GAC | Contig2819 | 21 | 1789486..1789557 | 0..0 | 78.54 | 54.05 |
| Val | TAC | Contig2819 | 45 | 3864219..3864145 | 0..0 | 85.22 | 65.75 |
tRNA Models
Contig2819.trna1 (13654-13730) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (13688-13690) Score: 87.85
HMM Sc=62.40 Sec struct Sc=25.45
* | * | * | * | * | * | * | *
Seq: GGGGCTATAGCTCAGTCGGTtAGAGCGCAGAGCTGATAACTCTGAGGtCGCTGGTTCGATTCCAGCTAGCCCCACCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna2 (14629-14704) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (14662-14664) Score: 80.76
HMM Sc=58.10 Sec struct Sc=22.66
* | * | * | * | * | * | * | *
Seq: GGGGCCCTAGCTCAACTGGCAGAGCACTGCCTTTGCAAGGCAGGGGtTAGGGGTTCAAGTCCCCTGGGCTCCACCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna3 (67524-67597) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (67556-67558) Score: 82.77
HMM Sc=62.44 Sec struct Sc=20.33
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTCAATGGCAGAACATCAGCTTCCCAAGCTGACAGTGCGGGTTCGATTCCCGTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna4 (234086-234172) Length: 87 bp
Type: Ser Anticodon: CGA at 35-37 (234120-234122) Score: 63.33
HMM Sc=24.64 Sec struct Sc=38.69
* | * | * | * | * | * | * | * | *
Seq: GGTGGCGTGTCCGAGTGGCctAAGGAGCACGCCTCGAAAGCGTGTGAGGGTTTACGCCCTCCGCGGGTTCAAATCCCGCCGCCACCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<.
Contig2819.trna5 (470769-470852) Length: 84 bp
Type: Tyr Anticodon: GTA at 35-37 (470803-470805) Score: 67.18
HMM Sc=38.85 Sec struct Sc=28.33
* | * | * | * | * | * | * | * |
Seq: GGCGGGTTGCCCGAGCGGCcaATGGGAGCGGACTGTAAATCCGTCGCGAAAGCTtCGAAGGTTCGAATCCTTCACCCGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.>>....<<...>>>>>.......<<<<<<<<<<<<....
Contig2819.trna6 (655708-655803) Length: 96 bp
Type: SeC Anticodon: TCA at 36-38 (655743-655745) Score: 37.78
HMM Sc=0.00 Sec struct Sc=0.00
* | * | * | * | * | * | * | * | * | *
Seq: GGAGGCGtTTGAGTTCCTGGTgGTCTCCCCTGCCTTCAAAGCAGGTGGGCCTGGCTCAgCCTGGCCGGCGGGTTCGATTCCTGTcCGCCTCCGCCA
Str: >>>>>>>...>>>...........<<<.>>>>>.......<<<<<..>>>>.>>.....<<.<<<<.>>>>>.......<<<<<.<<<<<<<....
Contig2819.trna7 (830937-831013) Length: 77 bp
Type: Ala Anticodon: CGC at 35-37 (830971-830973) Score: 84.90
HMM Sc=65.57 Sec struct Sc=19.33
* | * | * | * | * | * | * | *
Seq: GGGGCTGTGGCGCAGACcGGTAGCGCACCTCGTTCGCATCGAGGGGGtCAGGGGTTCAAATCCCCTCAGCTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna8 (875429-875500) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (875461-875463) Score: 50.82
HMM Sc=23.09 Sec struct Sc=27.73
* | * | * | * | * | * | * |
Seq: TGGGGTGTGGGGTAATGGCAACCCGCAGGCCTTTGGAGCCTTGAGcTCCTGGTTCGAGTCCAGGCACCCCAG
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.
Contig2819.trna9 (1012577-1012660) Length: 84 bp
Type: Leu Anticodon: TAA at 34-36 (1012610-1012612) Score: 65.40
HMM Sc=35.33 Sec struct Sc=30.07
* | * | * | * | * | * | * | * |
Seq: GCCCGGGTGGTGGAATGGCaGACACGGCCGCCTTAAAAGCGGCTGCCGCAAGGCATGCGGGTTCGATCCCCGCCCCGGGCACCT
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig2819.trna10 (1106829-1106904) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (1106862-1106864) Score: 83.57
HMM Sc=64.00 Sec struct Sc=19.57
* | * | * | * | * | * | * | *
Seq: GGGGCCGTGGCGCAGCTGGTAGCGCACCACACTGGCAGTGTGGGGGtCAGGGGTTCGAGTCCCCTCGGCTCCACCC
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna11 (1183092-1183166) Length: 75 bp
Type: Lys Anticodon: TTT at 33-35 (1183124-1183126) Score: 84.38
HMM Sc=59.37 Sec struct Sc=25.01
* | * | * | * | * | * | * |
Seq: GGGCCGCTAGCTCAATGGTAGAGCTGCTGACTTTTAATCAGTAGGtTCGGGGTTCGAGCCCCCGGCGGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna12 (1270726-1270801) Length: 76 bp
Type: His Anticodon: GTG at 34-36 (1270759-1270761) Score: 79.62
HMM Sc=60.08 Sec struct Sc=19.54
* | * | * | * | * | * | * | *
Seq: GTGGCTGTAGCTCAGTTGGCAGAGCACCGGGTTGTGGTCCCGGTTGtCGTGGGTTCAATTCCCATCAGTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna13 (1274262-1274337) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (1274295-1274297) Score: 88.68
HMM Sc=61.99 Sec struct Sc=26.69
* | * | * | * | * | * | * | *
Seq: GCGCCGCTAGCTCAACTGGCAGAGCAGCGGACTCTTAATCCGCGGGtTCGGGGTTCGAGTCCCTGGCGGCGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna14 (1418924-1418995) Length: 72 bp
Type: Gln Anticodon: CTG at 34-36 (1418957-1418959) Score: 54.66
HMM Sc=24.28 Sec struct Sc=30.38
* | * | * | * | * | * | * |
Seq: TGGGGTATGGGGTAATTGGCAGCCCGACTGATTCTGGTTCAGTTAGTCTAGGTTCGAGTCCTGGTACCCCAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna15 (1419095-1419167) Length: 73 bp
Type: Glu Anticodon: CTC at 35-37 (1419129-1419131) Score: 61.64
HMM Sc=39.75 Sec struct Sc=21.89
* | * | * | * | * | * | * |
Seq: GGCCCCGTCGTCTAGCGGCccAGGACGCCGCCCTCTCAAGGCGGTAGCGCCGGTTCGAATCCGGTCGGGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna16 (1419332-1419404) Length: 73 bp
Type: Glu Anticodon: CTC at 35-37 (1419366-1419368) Score: 61.64
HMM Sc=39.75 Sec struct Sc=21.89
* | * | * | * | * | * | * |
Seq: GGCCCCGTCGTCTAGCGGCccAGGACGCCGCCCTCTCAAGGCGGTAGCGCCGGTTCGAATCCGGTCGGGGCTA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna17 (1788599-1788671) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (1788632-1788634) Score: 87.87
HMM Sc=65.98 Sec struct Sc=21.89
* | * | * | * | * | * | * |
Seq: GCGGACGTAGCGCAGCTGGTAGCGCATCACCTTGCCAAGGTGAGGGtCGCGGGTTCGAATCCCGTCGTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna18 (1788706-1788776) Length: 71 bp
Type: Cys Anticodon: GCA at 33-35 (1788738-1788740) Score: 65.02
HMM Sc=42.51 Sec struct Sc=22.51
* | * | * | * | * | * | * |
Seq: GGTGGGGTGGCCGAGAGGCGAGGCAACGGCCTGCAAAGCCGTGTACGCGGGTTCAAATCCCGTCCCCACCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna19 (1788789-1788863) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (1788821-1788823) Score: 86.83
HMM Sc=62.32 Sec struct Sc=24.51
* | * | * | * | * | * | * |
Seq: GGGCGATTGGCGCAGTGGGAGCGCGCTTCCTTGACACGGAAGAGGtCACTGGTTCAAACCCAGTATCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna20 (1789375-1789447) Length: 73 bp
Type: Gly Anticodon: GCC at 34-36 (1789408-1789410) Score: 87.87
HMM Sc=65.98 Sec struct Sc=21.89
* | * | * | * | * | * | * |
Seq: GCGGACGTAGCGCAGCTGGTAGCGCATCACCTTGCCAAGGTGAGGGtCGCGGGTTCGAATCCCGTCGTCCGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna21 (1789486-1789557) Length: 72 bp
Type: Val Anticodon: GAC at 33-35 (1789518-1789520) Score: 78.54
HMM Sc=54.05 Sec struct Sc=24.49
* | * | * | * | * | * | * |
Seq: GGGCGATTGGCGCAGTGGGAGCGCGCTTCCTTGACACGGAAGAGGtCACTGGTTCAAACCCAGTATCGCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna22 (1822362-1822436) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (1822394-1822396) Score: 79.54
HMM Sc=55.21 Sec struct Sc=24.33
* | * | * | * | * | * | * |
Seq: GGGCGATTAGCTCAGCGGGAGAGCGCTTCGTTCACACCGAAGAGGtCACTGGTTCGATCCCAGTATCGCCCACCC
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna23 (2206283-2206356) Length: 74 bp
Type: Pro Anticodon: GGG at 35-37 (2206317-2206319) Score: 77.33
HMM Sc=55.66 Sec struct Sc=21.67
* | * | * | * | * | * | * |
Seq: CGGGACGTGGCGCAGCTtGGTAGCGCACTTGACTGGGGGTCAAGGGGtCGTCGGTTCGAATCCGGCCGTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna24 (3618390-3618466) Length: 77 bp
Type: Leu Anticodon: CAA at 35-37 (3618424-3618426) Score: 42.84
HMM Sc=17.61 Sec struct Sc=25.23
* | * | * | * | * | * | * | *
Seq: GTCCCCGTATTCCAACCGGTaGAGAAACGGAGCTCAAACCTCCGACAgTGTGGGTTCGAATCCCACCGGGGACACGA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna25 (4021118-4021191) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (4021150-4021152) Score: 82.20
HMM Sc=61.59 Sec struct Sc=20.61
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGCTCAATGGCAGAGCTTCAGTCTTCCAAACTGACGGTGCGGGTTCGATTCCCGTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna26 (4078954-4079026) Length: 73 bp
Type: Arg Anticodon: TCT at 34-36 (4078987-4078989) Score: 78.59
HMM Sc=59.20 Sec struct Sc=19.39
* | * | * | * | * | * | * |
Seq: GCGCCCGTAGCTCAGCGGAtAGAGCAGGGGACTTCTAATCCCAAGGcCGCAGGTTCGAATCCTGCCGGGCGCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.
Contig2819.trna27 (4190586-4190660) Length: 75 bp
Type: Arg Anticodon: CCG at 34-36 (4190619-4190621) Score: 85.39
HMM Sc=64.83 Sec struct Sc=20.56
* | * | * | * | * | * | * |
Seq: GCCCCCGTAGCTCAGGGGAtAGAGCACCGCCCTCCGGAGGCGGGAGCGCAGGTTCGAATCCTGCCGGGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna28 (4687456-4687546) Length: 91 bp
Type: Ser Anticodon: GCT at 37-39 (4687492-4687494) Score: 64.15
HMM Sc=32.09 Sec struct Sc=32.06
* | * | * | * | * | * | * | * | * |
Seq: GGAGACTTCGCCTAGTCtGGTctATGGCGCCGCACTGCTAATGCGGTTGGGGTTTTAAAGCCCCTCCCGGGTTCGAATCCCGGAGTCTCCG
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig2819.trna29 (4687582-4687657) Length: 76 bp
Type: Arg Anticodon: ACG at 34-36 (4687615-4687617) Score: 77.14
HMM Sc=58.23 Sec struct Sc=18.91
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAACGGAtAGAGCATCTGACTACGGATCAGAAGGtTAGGGGTTCGAATCCCTTCGGGCGCGCAA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna30 (4936175-4936251) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (4936209-4936211) Score: 88.93
HMM Sc=65.55 Sec struct Sc=23.38
* | * | * | * | * | * | * | *
Seq: CGGGGTGTGGCGCAGCTtGGTAGCGCGCTTCGTTCGGGACGAAGAGGtCGTCGGTTCGAATCCGGCCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna31 (5062372-5062286) Length: 87 bp
Type: Ser Anticodon: TGA at 35-37 (5062338-5062336) Score: 53.76
HMM Sc=24.94 Sec struct Sc=28.82
* | * | * | * | * | * | * | * | *
Seq: GGAGGGTTCGCCTAGTGGCcgATGGCGCTGGTCTTGAAAACCGGTAAGGCAGTGATGTCTTCGTGGGTTCGAATCCCACACCCTCCG
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig2819.trna32 (5031016-5030944) Length: 73 bp
Type: Glu Anticodon: TTC at 35-37 (5030982-5030980) Score: 60.90
HMM Sc=37.67 Sec struct Sc=23.23
* | * | * | * | * | * | * |
Seq: GCCCTCATCGTCTAGCGGCccAGGACGCCGCCCTTTCAAGGCGGTAGCACGGGTTCGAATCCCGTTGGGGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna33 (5030917-5030841) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (5030883-5030881) Score: 75.46
HMM Sc=50.58 Sec struct Sc=24.88
* | * | * | * | * | * | * | *
Seq: GGTCCTGTGGAGCAGTTGGAgTGCTCGCCGCCCTGTCAAGGCGGAGGtCGCGGGTTCAAGTCCCGTCAGGACCGCAA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna34 (5030741-5030668) Length: 74 bp
Type: Phe Anticodon: GAA at 35-37 (5030707-5030705) Score: 79.97
HMM Sc=58.23 Sec struct Sc=21.74
* | * | * | * | * | * | * |
Seq: GGCCAGGTAGCTCAGTTGGTaCGAGCGTCCGACTGAAAATCGGAAGGtCGGCGGTTCGACCCCGCCCCTGGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna35 (4785251-4785175) Length: 77 bp
Type: Thr Anticodon: TGT at 35-37 (4785217-4785215) Score: 88.10
HMM Sc=69.84 Sec struct Sc=18.26
* | * | * | * | * | * | * | *
Seq: GCCCCTGTAGCTCAGCTGGAcAGAGCACTCGCCTTGTAAGCGAGATGtCGCCGGTTCGATCCCGGCCGGGGGCTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna36 (4565287-4565214) Length: 74 bp
Type: Thr Anticodon: CGT at 35-37 (4565253-4565251) Score: 85.60
HMM Sc=62.39 Sec struct Sc=23.21
* | * | * | * | * | * | * |
Seq: GCCGCCTTAGCTCAGTCGGCtAGAGCGACGCACTCGTAATGCGTAGGtCGACGGTTCGATTCCGTCAGGCGGCT
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna37 (4494989-4494917) Length: 73 bp
Type: Thr Anticodon: GGT at 34-36 (4494956-4494954) Score: 74.94
HMM Sc=46.28 Sec struct Sc=28.66
* | * | * | * | * | * | * |
Seq: GCCCCCTTAGCTCAGTCGGCAGAGCGTCTCCATGGTAAGGAGAAGGtCTACGGTTCGATTCCGTAAGGGGGCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna38 (4494892-4494820) Length: 73 bp
Type: Met Anticodon: CAT at 34-36 (4494859-4494857) Score: 74.95
HMM Sc=57.91 Sec struct Sc=17.04
* | * | * | * | * | * | * |
Seq: GGCGGTGTAGCTCAGGTGGCAGAGCAAGCGGCTCATAATCGCTGTGtCGCCGGTTCAAGTCCGGCCACCGCTA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna39 (4493441-4493369) Length: 73 bp
Type: Trp Anticodon: CCA at 34-36 (4493408-4493406) Score: 75.77
HMM Sc=52.67 Sec struct Sc=23.10
* | * | * | * | * | * | * |
Seq: AGGGGTGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGcTGCAGGTTCAAGTCCTGTCACCCCTG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna40 (4270874-4270801) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (4270840-4270838) Score: 79.35
HMM Sc=55.95 Sec struct Sc=23.40
* | * | * | * | * | * | * |
Seq: CGCGGGGTGGAGCAGCTcGGTAGCTCGCTGGGCTCATAACCCAGAGGtCGCAGGTTCAAATCCTGTCCCCGCTA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Contig2819.trna41 (4269923-4269850) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (4269889-4269887) Score: 79.35
HMM Sc=55.95 Sec struct Sc=23.40
* | * | * | * | * | * | * |
Seq: CGCGGGGTGGAGCAGCTcGGTAGCTCGCTGGGCTCATAACCCAGAGGtCGCAGGTTCAAATCCTGTCCCCGCTA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Contig2819.trna42 (4020841-4020768) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (4020807-4020805) Score: 78.37
HMM Sc=57.84 Sec struct Sc=20.53
* | * | * | * | * | * | * |
Seq: CGGGGTGTGGCGCAGCTtGGTAGCGCACTCGCTTTGGGAGCGAGGGGcCGTGGGTTCAAATCCCGCCACCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna43 (3925148-3925076) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (3925115-3925113) Score: 75.11
HMM Sc=41.87 Sec struct Sc=33.24
* | * | * | * | * | * | * |
Seq: TCCCCCGTAGCTCAATTGGCAGAGCAGCCGGCTGTTAACCGGCAGGtTTTTGGTTCGAGTCCAAACGGGGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2819.trna44 (3921365-3921289) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3921331-3921329) Score: 93.36
HMM Sc=75.30 Sec struct Sc=18.06
* | * | * | * | * | * | * | *
Seq: GGGGTGGTAGCTCAGCTGGTcAGAGCAGGGGACTCATAATCCCTCGGtCGCGGGTTCAAGTCCCGCCCGCCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna45 (3864219-3864145) Length: 75 bp
Type: Val Anticodon: TAC at 33-35 (3864187-3864185) Score: 85.22
HMM Sc=65.75 Sec struct Sc=19.47
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGTGGGAGAGCACTCGCCTTACAAGCGAGGGGtCGCAGGTTCGAAACCTGCCGCGCCCACCC
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna46 (3325305-3325222) Length: 84 bp
Type: Leu Anticodon: GAG at 34-36 (3325272-3325270) Score: 57.16
HMM Sc=31.67 Sec struct Sc=25.49
* | * | * | * | * | * | * | * |
Seq: GTCCGGGTGGCGGAATGGCaGACGCGCTAGCTTGAGGTGCTAGTGCCCGTATaGGGCGTGGGGGTTCAAGTCCCCCCTCGGACA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig2819.trna47 (1260453-1260367) Length: 87 bp
Type: Leu Anticodon: TAG at 35-37 (1260419-1260417) Score: 71.93
HMM Sc=48.47 Sec struct Sc=23.46
* | * | * | * | * | * | * | * | *
Seq: GCGGGAGTGGCGTAATTGGCaGCCGCGCAGGTCTTAGGAGCCTGTGTCCGAGAGGACGTGGGGGTTCGAGTCCCCCCTCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig2819.trna48 (631372-631297) Length: 76 bp
Type: Arg Anticodon: CCT at 34-36 (631339-631337) Score: 76.00
HMM Sc=54.98 Sec struct Sc=21.02
* | * | * | * | * | * | * | *
Seq: GCCCTCGTAGCTCAGGGGAtAGAGCAACGGTTTCCTAAACCGTGTGtCGCAGGTTCGATTCCTGCCGGGGGCACCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2819.trna49 (242083-241999) Length: 85 bp
Type: Ser Anticodon: GGA at 35-37 (242049-242047) Score: 57.27
HMM Sc=23.14 Sec struct Sc=34.13
* | * | * | * | * | * | * | * |
Seq: GGAGGATTCGCCTAGAGGCctAGGGCGCACGCTTGGAAAGCGTGTTGGGTTCACACCCTCACGAGTTCGAATCTCGTATCCTCCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig2819.trna50 (48925-48840) Length: 86 bp
Type: Leu Anticodon: CAG at 34-36 (48892-48890) Score: 72.90
HMM Sc=44.30 Sec struct Sc=28.60
* | * | * | * | * | * | * | * | *
Seq: GGGGAAGTGGCGGAATGGCaGACGCGCACGGTTCAGGTCCGTGTGCCCGAAAGGGCGTGGGGGTTCAACTCCCCCCTTCCCCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
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