Intracellular trafficking and secretion

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig2819	Stro0220	COG1157	35	0.009
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig2819	Stro3630	COG1157	228	7e-61
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig2819	Stro3632	COG1157	197	1e-51
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig2819	Stro3646	COG1157	104	3e-23
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig2819	Stro3800	COG1157	39	7e-04
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig2819	Stro3819	COG1157	38	9e-04
Predicted ATPase involved in biogenesis of flagella	U	Contig2819	Stro4269	COG2874	39	9e-04

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flp pilus assembly protein ATPase CpaE	U	Contig2819	Stro1925	COG4963	56	4e-09
Flp pilus assembly protein ATPase CpaE	U	Contig2819	Stro3199	COG4963	53	3e-08
Flp pilus assembly protein ATPase CpaE	U	Contig2819	Stro4040	COG4963	55	1e-08
Flp pilus assembly protein ATPase CpaE	U	Contig2819	Stro4587	COG4963	47	2e-06
Flp pilus assembly protein ATPase CpaF	U	Contig2819	Stro1357	COG4962	38	0.003
Flp pilus assembly protein ATPase CpaF	U	Contig2819	Stro4039	COG4962	316	2e-87
Flp pilus assembly protein ATPase CpaF	U	Contig2819	Stro4457	COG4962	162	7e-41
Flp pilus assembly protein TadB	U	Contig2819	Stro4037	COG4965	55	4e-09
Flp pilus assembly protein TadB	U	Contig2819	Stro4038	COG4965	55	9e-09
Flp pilus assembly protein TadB	U	Contig2819	Stro4455	COG4965	46	4e-06
Flp pilus assembly protein TadB	U	Contig2819	Stro4456	COG4965	39	3e-04
Flp pilus assembly protein TadC	U	Contig2819	Stro4037	COG2064	49	2e-07
Flp pilus assembly protein TadD contains TPR repeats	U	Contig2819	Stro0366	COG5010	33	0.006
Flp pilus assembly protein TadD contains TPR repeats	U	Contig2819	Stro4259	COG5010	35	0.006
Flp pilus assembly protein TadG	U	Contig2819	Stro4452	COG4961	37	0.001
Flp pilus assembly protein TadG	U	Contig2819	Stro4453	COG4961	43	8e-06
GTPase-activating protein that regulates ARFs (ADP-ribosylation factors) involved in ARF-mediated vesicular transport	U	Contig2819	Stro1435	COG5347	42	8e-04
Lipoprotein signal peptidase	U	Contig2819	Stro3202	COG0597	129	2e-31
Membrane protein implicated in regulation of membrane protease activity	U	Contig2819	Stro3019	COG1585	88	3e-19
Multiple antibiotic transporter	U	Contig2819	Stro0736	COG2095	122	2e-29
Periplasmic component of the Tol biopolymer transport system	U	Contig2819	Stro0411	COG0823	38	2e-04
Periplasmic component of the Tol biopolymer transport system	U	Contig2819	Stro0590	COG0823	103	3e-23
Periplasmic component of the Tol biopolymer transport system	U	Contig2819	Stro0612	COG0823	96	7e-21
Periplasmic component of the Tol biopolymer transport system	U	Contig2819	Stro4105	COG0823	43	8e-05
Periplasmic component of the Tol biopolymer transport system	U	Contig2819	Stro4573	COG0823	50	2e-07
Periplasmic serine protease (ClpP class)	U	Contig2819	Stro0695	COG0616	45	3e-06
Periplasmic serine protease (ClpP class)	U	Contig2819	Stro3498	COG0616	47	9e-07
Periplasmic serine protease (ClpP class)	U	Contig2819	Stro3499	COG0616	47	9e-07
P pilus assembly protein porin PapC	U	Contig2819	Stro4301	COG3188	34	0.006
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig2819	Stro1318	COG0758	208	6e-55
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig2819	Stro3751	COG0758	36	0.004
Preprotein translocase subunit Sec63	U	Contig2819	Stro0115	COG5407	49	5e-07
Preprotein translocase subunit Sec63	U	Contig2819	Stro3455	COG5407	72	6e-14

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	Contig2819	Stro0973	COG0653	1015	0.0
Preprotein translocase subunit SecA (ATPase RNA helicase)	U	Contig2819	Stro2144	COG0653	662	0.0
Preprotein translocase subunit SecD	U	Contig2819	Stro1420	COG0342	42	2e-04
Preprotein translocase subunit SecD	U	Contig2819	Stro1812	COG0342	214	2e-56
Preprotein translocase subunit SecD	U	Contig2819	Stro1813	COG0342	55	7e-09
Preprotein translocase subunit SecD	U	Contig2819	Stro2920	COG0342	43	9e-05
Preprotein translocase subunit SecD	U	Contig2819	Stro2987	COG0342	52	1e-07
Preprotein translocase subunit SecD	U	Contig2819	Stro3129	COG0342	40	6e-04
Preprotein translocase subunit SecD	U	Contig2819	Stro3419	COG0342	43	1e-04
Preprotein translocase subunit SecD	U	Contig2819	Stro3649	COG0342	60	1e-09
Preprotein translocase subunit SecD	U	Contig2819	Stro3665	COG0342	45	2e-05
Preprotein translocase subunit SecE	U	Contig2819	Stro3939	COG0690	65	1e-12
Preprotein translocase subunit SecF	U	Contig2819	Stro1812	COG0341	73	9e-14
Preprotein translocase subunit SecF	U	Contig2819	Stro1813	COG0341	216	3e-57
Preprotein translocase subunit SecF	U	Contig2819	Stro3129	COG0341	49	2e-06
Preprotein translocase subunit SecF	U	Contig2819	Stro3649	COG0341	57	1e-08
Preprotein translocase subunit SecG	U	Contig2819	Stro3095	COG1314	48	1e-07
Preprotein translocase subunit SecY	U	Contig2819	Stro3903	COG0201	386	1.0e-108
Preprotein translocase subunit YajC	U	Contig2819	Stro1811	COG1862	104	2e-24
Preprotein translocase subunit YidC	U	Contig2819	Stro4590	COG0706	147	9e-37

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Protease subunit of ATP-dependent Clp protease	U	Contig2819	Stro0695	COG0740	235	1e-63
Protease subunit of ATP-dependent Clp protease	U	Contig2819	Stro3498	COG0740	238	2e-64
Protease subunit of ATP-dependent Clp protease	U	Contig2819	Stro3499	COG0740	245	2e-66
Sec-independent protein secretion pathway components	U	Contig2819	Stro0713	COG1826	43	9e-06
Sec-independent protein secretion pathway components	U	Contig2819	Stro2252	COG1826	62	1e-11
Sec-independent protein secretion pathway component TatC	U	Contig2819	Stro2253	COG0805	190	2e-49
Signal peptidase I	U	Contig2819	Stro1310	COG0681	66	4e-12
Signal peptidase I	U	Contig2819	Stro1311	COG0681	61	5e-11
Signal recognition particle GTPase	U	Contig2819	Stro1295	COG0552	343	2e-95
Signal recognition particle GTPase	U	Contig2819	Stro1295	COG0541	231	5e-62
Signal recognition particle GTPase	U	Contig2819	Stro1301	COG0552	209	5e-55
Signal recognition particle GTPase	U	Contig2819	Stro1301	COG0541	585	1.0e-168
Signal recognition particle GTPase	U	Contig2819	Stro3609	COG0552	36	0.004
Signal recognition particle GTPase	U	Contig2819	Stro3609	COG0541	43	3e-05
Signal recognition particle GTPase	U	Contig2819	Stro3688	COG0552	37	0.002
Signal recognition particle GTPase	U	Contig2819	Stro4587	COG0541	36	0.005
Tfp pilus assembly protein ATPase PilU	U	Contig2819	Stro4039	COG5008	58	2e-09
Tfp pilus assembly protein FimV	U	Contig2819	Stro1435	COG3170	55	7e-08
Tfp pilus assembly protein PilF	U	Contig2819	Stro0366	COG3063	38	2e-04
Tfp pilus assembly protein PilF	U	Contig2819	Stro3041	COG3063	38	0.003
Tfp pilus assembly protein PilF	U	Contig2819	Stro4259	COG3063	35	0.008
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig2819	Stro4039	COG2805	58	9e-10
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig2819	Stro4457	COG2805	51	2e-07
Type III secretory pathway component EscT	U	Contig2819	Stro3321	COG4791	36	0.009
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig2819	Stro1990	COG2804	36	0.003
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig2819	Stro4039	COG2804	67	2e-12
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	U	Contig2819	Stro4462	COG1989	55	4e-09
Type II secretory pathway prepilin signal peptidase PulO and related peptidase	U	Contig2819	Stro4495	COG1989	57	1e-09
Type IV secretory pathway protease TraF	U	Contig2819	Stro1310	COG4959	36	0.003
Type IV secretory pathway TrbL protein	U	Contig2819	Stro1435	COG3846	41	0.002
Type IV secretory pathway TrbL protein	U	Contig2819	Stro4560	COG3846	41	3e-04
Type IV secretory pathway VirB10 protein	U	Contig2819	Stro4498	COG2948	42	7e-05
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig2819	Stro0842	COG0630	37	0.005
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig2819	Stro0982	COG0630	34	0.009
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig2819	Stro2208	COG0630	39	0.001
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig2819	Stro4039	COG0630	194	7e-51
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig2819	Stro4457	COG0630	147	2e-36
Type IV secretory pathway VirB4 protein	U	Contig2819	Stro0842	COG3451	39	0.001
Type IV secretory pathway VirB4 protein	U	Contig2819	Stro0982	COG3451	36	0.002
Type IV secretory pathway VirB4 protein	U	Contig2819	Stro4444	COG3451	39	0.001

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