DNA Replication, Recombination and Repair

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	Contig2819	Stro1548	COG0122	99	3e-22
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	Contig2819	Stro3783	COG0122	161	1e-40
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	Contig2819	Stro4319	COG0122	44	1e-05
3-methyladenine DNA glycosylase	L	Contig2819	Stro0705	COG2818	241	3e-65
3-methyladenine DNA glycosylase	L	Contig2819	Stro1896	COG2094	175	2e-45
5'-3' exonuclease (including N-terminal domain of PolI)	L	Contig2819	Stro2257	COG0258	175	3e-45
5'-3' exonuclease (including N-terminal domain of PolI)	L	Contig2819	Stro3145	COG0258	251	2e-67
A/G-specific DNA glycosylase	L	Contig2819	Stro0568	COG1194	69	1e-12
A/G-specific DNA glycosylase	L	Contig2819	Stro4274	COG1194	243	1e-65
A/G-specific DNA glycosylase	L	Contig2819	Stro4319	COG1194	89	4e-19
ATPase involved in DNA repair	L	Contig2819	Stro0005	COG0497	36	0.004
ATPase involved in DNA repair	L	Contig2819	Stro0005	COG0419	49	4e-07
ATPase involved in DNA repair	L	Contig2819	Stro0055	COG0419	39	4e-04
ATPase involved in DNA repair	L	Contig2819	Stro0219	COG0419	44	2e-05
ATPase involved in DNA repair	L	Contig2819	Stro0220	COG0419	39	5e-04
ATPase involved in DNA repair	L	Contig2819	Stro0249	COG0419	37	0.001
ATPase involved in DNA repair	L	Contig2819	Stro0256	COG0419	52	2e-07
ATPase involved in DNA repair	L	Contig2819	Stro0289	COG0419	38	0.001
ATPase involved in DNA repair	L	Contig2819	Stro0397	COG0419	49	4e-07
ATPase involved in DNA repair	L	Contig2819	Stro0432	COG0419	35	0.008
ATPase involved in DNA repair	L	Contig2819	Stro0435	COG0419	40	2e-04
ATPase involved in DNA repair	L	Contig2819	Stro0454	COG0419	37	0.002
ATPase involved in DNA repair	L	Contig2819	Stro0503	COG0419	49	6e-07
ATPase involved in DNA repair	L	Contig2819	Stro0533	COG0419	37	0.006
ATPase involved in DNA repair	L	Contig2819	Stro0617	COG0419	40	3e-04
ATPase involved in DNA repair	L	Contig2819	Stro0750	COG0419	45	1e-05
ATPase involved in DNA repair	L	Contig2819	Stro0763	COG0419	42	1e-04
ATPase involved in DNA repair	L	Contig2819	Stro0784	COG0419	51	3e-07
ATPase involved in DNA repair	L	Contig2819	Stro0808	COG0419	44	5e-05
ATPase involved in DNA repair	L	Contig2819	Stro0822	COG0419	47	5e-06
ATPase involved in DNA repair	L	Contig2819	Stro0823	COG0419	44	2e-05
ATPase involved in DNA repair	L	Contig2819	Stro0982	COG0419	54	8e-09
ATPase involved in DNA repair	L	Contig2819	Stro1119	COG0419	48	9e-07
ATPase involved in DNA repair	L	Contig2819	Stro1201	COG0419	43	3e-05
ATPase involved in DNA repair	L	Contig2819	Stro1291	COG0497	54	5e-08
ATPase involved in DNA repair	L	Contig2819	Stro1291	COG0419	84	6e-17
ATPase involved in DNA repair	L	Contig2819	Stro1342	COG0419	49	3e-07
ATPase involved in DNA repair	L	Contig2819	Stro1431	COG0419	55	6e-09
ATPase involved in DNA repair	L	Contig2819	Stro1524	COG0419	44	4e-05
ATPase involved in DNA repair	L	Contig2819	Stro1551	COG0497	48	4e-06
ATPase involved in DNA repair	L	Contig2819	Stro1551	COG0419	149	1e-36
ATPase involved in DNA repair	L	Contig2819	Stro1628	COG0419	44	9e-06
ATPase involved in DNA repair	L	Contig2819	Stro1635	COG0419	49	7e-07
ATPase involved in DNA repair	L	Contig2819	Stro1641	COG0419	46	4e-06
ATPase involved in DNA repair	L	Contig2819	Stro1672	COG0419	45	8e-06
ATPase involved in DNA repair	L	Contig2819	Stro1673	COG0419	46	5e-06
ATPase involved in DNA repair	L	Contig2819	Stro1685	COG0419	38	6e-04
ATPase involved in DNA repair	L	Contig2819	Stro1795	COG0419	39	5e-04
ATPase involved in DNA repair	L	Contig2819	Stro1801	COG0419	36	0.003
ATPase involved in DNA repair	L	Contig2819	Stro1802	COG0419	35	0.004
ATPase involved in DNA repair	L	Contig2819	Stro1913	COG0497	474	1.0e-135
ATPase involved in DNA repair	L	Contig2819	Stro1913	COG0419	46	7e-06
ATPase involved in DNA repair	L	Contig2819	Stro1968	COG0419	44	9e-06
ATPase involved in DNA repair	L	Contig2819	Stro2005	COG0419	57	2e-09
ATPase involved in DNA repair	L	Contig2819	Stro2015	COG0419	60	3e-10
ATPase involved in DNA repair	L	Contig2819	Stro2035	COG0419	48	9e-07
ATPase involved in DNA repair	L	Contig2819	Stro2175	COG0419	43	4e-05
ATPase involved in DNA repair	L	Contig2819	Stro2208	COG0419	42	9e-05
ATPase involved in DNA repair	L	Contig2819	Stro2234	COG0419	49	4e-07
ATPase involved in DNA repair	L	Contig2819	Stro2335	COG0419	59	2e-09
ATPase involved in DNA repair	L	Contig2819	Stro2402	COG0419	50	3e-07
ATPase involved in DNA repair	L	Contig2819	Stro2430	COG0419	54	2e-08
ATPase involved in DNA repair	L	Contig2819	Stro2540	COG0419	37	0.002
ATPase involved in DNA repair	L	Contig2819	Stro2547	COG0419	49	6e-07
ATPase involved in DNA repair	L	Contig2819	Stro2555	COG0419	45	5e-06
ATPase involved in DNA repair	L	Contig2819	Stro2567	COG0419	57	3e-09
ATPase involved in DNA repair	L	Contig2819	Stro2585	COG0419	42	4e-05
ATPase involved in DNA repair	L	Contig2819	Stro2592	COG0419	55	4e-09
ATPase involved in DNA repair	L	Contig2819	Stro2650	COG0497	38	0.002
ATPase involved in DNA repair	L	Contig2819	Stro2650	COG0419	70	5e-13
ATPase involved in DNA repair	L	Contig2819	Stro2760	COG0419	50	2e-07
ATPase involved in DNA repair	L	Contig2819	Stro2841	COG0419	47	4e-06
ATPase involved in DNA repair	L	Contig2819	Stro2842	COG0419	45	2e-05
ATPase involved in DNA repair	L	Contig2819	Stro2945	COG0419	40	3e-05
ATPase involved in DNA repair	L	Contig2819	Stro3071	COG0419	41	2e-04
ATPase involved in DNA repair	L	Contig2819	Stro3074	COG0419	49	7e-07
ATPase involved in DNA repair	L	Contig2819	Stro3111	COG0419	47	5e-06
ATPase involved in DNA repair	L	Contig2819	Stro3147	COG0419	35	0.010
ATPase involved in DNA repair	L	Contig2819	Stro3162	COG0419	42	6e-05
ATPase involved in DNA repair	L	Contig2819	Stro3177	COG0419	54	1e-08
ATPase involved in DNA repair	L	Contig2819	Stro3180	COG0419	38	0.002
ATPase involved in DNA repair	L	Contig2819	Stro3423	COG0419	38	0.001
ATPase involved in DNA repair	L	Contig2819	Stro3438	COG0419	60	2e-10
ATPase involved in DNA repair	L	Contig2819	Stro3443	COG0419	54	3e-08
ATPase involved in DNA repair	L	Contig2819	Stro3542	COG0419	49	1e-06
ATPase involved in DNA repair	L	Contig2819	Stro3614	COG0419	42	2e-04
ATPase involved in DNA repair	L	Contig2819	Stro3622	COG0419	49	6e-07
ATPase involved in DNA repair	L	Contig2819	Stro3688	COG0419	44	1e-05
ATPase involved in DNA repair	L	Contig2819	Stro3785	COG0419	38	0.002
ATPase involved in DNA repair	L	Contig2819	Stro3786	COG0419	41	2e-04
ATPase involved in DNA repair	L	Contig2819	Stro3788	COG0419	43	3e-05
ATPase involved in DNA repair	L	Contig2819	Stro3790	COG0419	37	0.001
ATPase involved in DNA repair	L	Contig2819	Stro3799	COG0419	48	1e-06
ATPase involved in DNA repair	L	Contig2819	Stro3800	COG0419	37	0.002
ATPase involved in DNA repair	L	Contig2819	Stro3819	COG0419	36	0.004
ATPase involved in DNA repair	L	Contig2819	Stro3820	COG0419	41	1e-04
ATPase involved in DNA repair	L	Contig2819	Stro3847	COG0419	47	1e-06
ATPase involved in DNA repair	L	Contig2819	Stro3879	COG0419	37	0.002
ATPase involved in DNA repair	L	Contig2819	Stro3891	COG0419	54	2e-08
ATPase involved in DNA repair	L	Contig2819	Stro4079	COG0419	50	2e-07
ATPase involved in DNA repair	L	Contig2819	Stro4130	COG0419	42	5e-05
ATPase involved in DNA repair	L	Contig2819	Stro4172	COG0419	47	4e-06
ATPase involved in DNA repair	L	Contig2819	Stro4185	COG0419	49	3e-07
ATPase involved in DNA repair	L	Contig2819	Stro4234	COG0419	57	1e-09
ATPase involved in DNA repair	L	Contig2819	Stro4291	COG0419	47	2e-06
ATPase involved in DNA repair	L	Contig2819	Stro4339	COG0419	50	7e-07
ATPase involved in DNA repair	L	Contig2819	Stro4384	COG0419	40	2e-04
ATPase involved in DNA repair	L	Contig2819	Stro4400	COG0419	60	6e-10
ATPase involved in DNA repair	L	Contig2819	Stro4423	COG0419	39	2e-04
ATPase involved in DNA repair	L	Contig2819	Stro4444	COG0419	54	4e-08
ATPase involved in DNA repair	L	Contig2819	Stro4445	COG0419	46	1e-05
ATPase involved in DNA repair	L	Contig2819	Stro4500	COG0419	47	2e-06
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro0121	COG2256	40	6e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro0213	COG2256	84	4e-17
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro0254	COG2256	43	8e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro0467	COG2256	55	1e-08
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro1245	COG2256	38	0.001
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro1810	COG2256	73	4e-14
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro1824	COG2256	528	1.0e-151
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro2156	COG2256	43	8e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro2241	COG2256	42	1e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro2437	COG2256	36	0.006
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro2912	COG2256	49	4e-07
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro2952	COG2256	34	0.003
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro3028	COG2256	37	0.003
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro3232	COG2256	43	4e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro3497	COG2256	40	3e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro4022	COG2256	45	1e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro4275	COG2256	40	6e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig2819	Stro4308	COG2256	64	4e-11
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	Contig2819	Stro0230	COG0507	439	1.0e-124
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	Contig2819	Stro3817	COG0507	40	7e-04
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig2819	Stro3388	COG1074	52	1e-07
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig2819	Stro3739	COG1074	124	3e-29
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig2819	Stro3748	COG1074	186	8e-48
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig2819	Stro3749	COG1074	132	2e-31
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig2819	Stro3817	COG1074	205	1e-53
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig2819	Stro4077	COG1074	37	0.005
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig2819	Stro4539	COG1074	125	2e-29
ATP-dependent nuclease subunit B	L	Contig2819	Stro0737	COG3857	38	0.001
ATP-dependent nuclease subunit B	L	Contig2819	Stro2236	COG3857	45	6e-06
ATP-dependent nuclease subunit B	L	Contig2819	Stro3817	COG3857	43	1e-04
Bacterial nucleoid DNA-binding protein	L	Contig2819	Stro1260	COG0776	68	5e-13
Bacterial nucleoid DNA-binding protein	L	Contig2819	Stro4159	COG0776	102	4e-24

BASAL REPLICATION MACHINERY

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATPase involved in DNA replication	L	Contig2819	Stro0213	COG0470	44	4e-05
ATPase involved in DNA replication	L	Contig2819	Stro4022	COG0470	53	4e-08
ATPase involved in DNA replication initiation	L	Contig2819	Stro0001	COG0593	427	1.0e-120
ATPase involved in DNA replication initiation	L	Contig2819	Stro0254	COG0593	41	3e-04
ATPase involved in DNA replication initiation	L	Contig2819	Stro0467	COG0593	36	0.007
ATPase involved in DNA replication initiation	L	Contig2819	Stro1810	COG0593	37	0.002
ATPase involved in DNA replication initiation	L	Contig2819	Stro1824	COG0593	53	5e-08
ATPase involved in DNA replication initiation	L	Contig2819	Stro4005	COG0593	34	0.007
ATPase involved in DNA replication initiation	L	Contig2819	Stro4308	COG0593	52	1e-07
ATP-dependent DNA ligase	L	Contig2819	Stro1546	COG1793	198	4e-52
ATP-dependent DNA ligase	L	Contig2819	Stro3968	COG1793	192	3e-50
DNA polymerase elongation subunit (family B)	L	Contig2819	Stro0517	COG0417	38	7e-04
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	Contig2819	Stro1528	COG0749	38	0.002
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	Contig2819	Stro2980	COG0749	79	7e-16
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	Contig2819	Stro3145	COG0749	599	1.0e-172
DNA primase	L	Contig2819	Stro3425	COG0358	370	1.0e-103
DNA replication protein	L	Contig2819	Stro0001	COG1484	68	2e-12
DNA replication protein	L	Contig2819	Stro0121	COG1484	38	0.002
DNA replication protein	L	Contig2819	Stro0254	COG1484	40	8e-04
DNA replication protein	L	Contig2819	Stro2156	COG1484	43	1e-04
DNA replication protein	L	Contig2819	Stro2241	COG1484	37	0.004
DNA replication protein	L	Contig2819	Stro4005	COG1484	65	4e-12
DNA replication protein	L	Contig2819	Stro4308	COG1484	36	0.010
DNA replication protein	L	Contig2819	Stro4351	COG1484	36	0.003
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig2819	Stro1217	COG0272	809	0.0
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig2819	Stro3109	COG0272	46	6e-06
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig2819	Stro4270	COG0272	37	0.003
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig2819	Stro0884	COG1198	73	1e-13
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig2819	Stro1279	COG1198	82	1e-16
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig2819	Stro1865	COG1198	325	6e-90
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig2819	Stro2600	COG1198	35	0.009
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig2819	Stro3137	COG1198	49	1e-06
Replicative DNA helicase	L	Contig2819	Stro0521	COG0305	39	4e-04
Replicative DNA helicase	L	Contig2819	Stro4269	COG0305	54	3e-08
Replicative DNA helicase	L	Contig2819	Stro4552	COG0305	512	1.0e-146
Ribonuclease HI	L	Contig2819	Stro3355	COG0328	109	4e-25
Ribonuclease HII	L	Contig2819	Stro1312	COG0164	197	1e-51
Ribonuclease HIII	L	Contig2819	Stro1312	COG1039	48	6e-07
Single-stranded DNA-binding protein	L	Contig2819	Stro3556	COG0629	75	4e-15
Single-stranded DNA-binding protein	L	Contig2819	Stro4555	COG0629	119	1e-28
Topoisomerase IA	L	Contig2819	Stro4027	COG0550	587	1.0e-168
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig2819	Stro0009	COG0188	988	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig2819	Stro1681	COG0188	708	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig2819	Stro0008	COG0187	956	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig2819	Stro1595	COG0187	35	0.010
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig2819	Stro1680	COG0187	719	0.0

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Cdc6-related protein AAA superfamily ATPase	L	Contig2819	Stro0001	COG1474	38	0.002
Cdc6-related protein AAA superfamily ATPase	L	Contig2819	Stro0467	COG1474	43	7e-05
Cdc6-related protein AAA superfamily ATPase	L	Contig2819	Stro1810	COG1474	38	7e-04
Cdc6-related protein AAA superfamily ATPase	L	Contig2819	Stro2156	COG1474	40	0.001
Cdc6-related protein AAA superfamily ATPase	L	Contig2819	Stro2241	COG1474	38	0.002
Cdc6-related protein AAA superfamily ATPase	L	Contig2819	Stro2513	COG1474	37	0.008
Cdc6-related protein AAA superfamily ATPase	L	Contig2819	Stro3497	COG1474	39	5e-04
Cdc6-related protein AAA superfamily ATPase	L	Contig2819	Stro4308	COG1474	38	0.002
Deoxyinosine 3'endonuclease (endonuclease V)	L	Contig2819	Stro3777	COG1515	197	7e-52
DNA G:T-mismatch repair endonuclease	L	Contig2819	Stro0566	COG3727	105	2e-24
DNA gyrase inhibitor	L	Contig2819	Stro3506	COG3449	45	6e-06
DNA mismatch repair enzyme (predicted ATPase)	L	Contig2819	Stro0567	COG0323	45	1e-05
DNA mismatch repair enzyme (predicted ATPase)	L	Contig2819	Stro0572	COG0323	53	6e-08
DNA mismatch repair enzyme (predicted ATPase)	L	Contig2819	Stro1680	COG0323	38	0.002
DNA mismatch repair enzyme (predicted ATPase)	L	Contig2819	Stro2474	COG0323	45	1e-05
DNA or RNA helicase of superfamily II	L	Contig2819	Stro0376	COG1061	79	7e-16
DNA or RNA helicase of superfamily II	L	Contig2819	Stro0379	COG1061	74	3e-14
DNA or RNA helicase of superfamily II	L	Contig2819	Stro0884	COG1061	59	3e-09
DNA or RNA helicase of superfamily II	L	Contig2819	Stro1001	COG1061	43	8e-05
DNA or RNA helicase of superfamily II	L	Contig2819	Stro1279	COG1061	70	7e-13
DNA or RNA helicase of superfamily II	L	Contig2819	Stro1406	COG1061	62	3e-10
DNA or RNA helicase of superfamily II	L	Contig2819	Stro1473	COG1061	175	7e-45
DNA or RNA helicase of superfamily II	L	Contig2819	Stro1732	COG1061	59	2e-09
DNA or RNA helicase of superfamily II	L	Contig2819	Stro1744	COG1061	53	8e-08
DNA or RNA helicase of superfamily II	L	Contig2819	Stro2106	COG1061	71	3e-13
DNA or RNA helicase of superfamily II	L	Contig2819	Stro2256	COG1061	62	3e-10
DNA or RNA helicase of superfamily II	L	Contig2819	Stro3105	COG1061	54	3e-08
DNA or RNA helicase of superfamily II	L	Contig2819	Stro3137	COG1061	61	3e-10
DNA or RNA helicase of superfamily II	L	Contig2819	Stro3363	COG1061	55	4e-08
DNA or RNA helicase of superfamily II	L	Contig2819	Stro3950	COG1061	296	3e-81
DNA or RNA helicase of superfamily II	L	Contig2819	Stro4033	COG1061	42	1e-04
DNA or RNA helicase of superfamily II	L	Contig2819	Stro4088	COG1061	58	2e-09
DNA or RNA helicase of superfamily II	L	Contig2819	Stro4202	COG1061	51	1e-07

DNA POLYMERASE III SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA polymerase III alpha subunit	L	Contig2819	Stro0198	COG0587	41	1e-04
DNA polymerase III alpha subunit	L	Contig2819	Stro0735	COG0587	56	3e-09
DNA polymerase III alpha subunit	L	Contig2819	Stro1798	COG0587	1210	0.0
DNA polymerase III alpha subunit	L	Contig2819	Stro3239	COG0587	997	0.0
DNA polymerase III alpha subunit (gram-positive type)	L	Contig2819	Stro0735	COG2176	42	7e-05
DNA polymerase III alpha subunit (gram-positive type)	L	Contig2819	Stro1798	COG2176	179	1e-45
DNA polymerase III alpha subunit (gram-positive type)	L	Contig2819	Stro3239	COG2176	76	2e-14
DNA polymerase III alpha subunit (gram-positive type)	L	Contig2819	Stro3286	COG2176	151	2e-37
DNA polymerase III alpha subunit (gram-positive type)	L	Contig2819	Stro3469	COG2176	41	9e-05
DNA polymerase III delta subunit	L	Contig2819	Stro0213	COG1466	57	4e-09
DNA polymerase III delta subunit	L	Contig2819	Stro1824	COG1466	40	3e-04
DNA polymerase III delta subunit	L	Contig2819	Stro3467	COG1466	147	2e-36
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig2819	Stro1126	COG0847	46	2e-06
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig2819	Stro3286	COG0847	144	1e-35
DNA polymerase III gamma/tau subunits	L	Contig2819	Stro0213	COG2812	428	1.0e-120
DNA polymerase III gamma/tau subunits	L	Contig2819	Stro1810	COG2812	48	1e-06
DNA polymerase III gamma/tau subunits	L	Contig2819	Stro1824	COG2812	79	5e-16
DNA polymerase III gamma/tau subunits	L	Contig2819	Stro2156	COG2812	40	0.001
DNA polymerase III gamma/tau subunits	L	Contig2819	Stro3497	COG2812	37	0.003
DNA polymerase III gamma/tau subunits	L	Contig2819	Stro4022	COG2812	130	2e-31
DNA polymerase III gamma/tau subunits	L	Contig2819	Stro4275	COG2812	40	0.001
DNA polymerase sliding clamp subunit (PCNA homolog)	L	Contig2819	Stro0003	COG0592	237	8e-64

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA polymerase IV (family X)	L	Contig2819	Stro0198	COG1796	49	6e-07
DNA repair exonuclease	L	Contig2819	Stro1223	COG0420	41	2e-04
DNA repair exonuclease	L	Contig2819	Stro1552	COG0420	151	1e-37
DNA repair exonuclease	L	Contig2819	Stro3584	COG0420	39	4e-04
DNA repair exonuclease	L	Contig2819	Stro4538	COG0420	36	0.005
DNA repair photolyase	L	Contig2819	Stro0729	COG1533	202	3e-53
DNA repair photolyase	L	Contig2819	Stro3484	COG1533	43	7e-05
DNA repair protein	L	Contig2819	Stro3109	COG2003	41	3e-04
DNA repair protein	L	Contig2819	Stro4270	COG2003	36	0.004
DNA topoisomerase VI subunit B	L	Contig2819	Stro0336	COG1389	41	2e-04
DNA topoisomerase VI subunit B	L	Contig2819	Stro0572	COG1389	46	5e-06
DNA topoisomerase VI subunit B	L	Contig2819	Stro0623	COG1389	39	5e-04
DNA topoisomerase VI subunit B	L	Contig2819	Stro2131	COG1389	37	0.004
DNA topoisomerase VI subunit B	L	Contig2819	Stro2474	COG1389	36	0.007
DNA uptake protein and related DNA-binding protein	L	Contig2819	Stro1706	COG1555	60	8e-10
DNA uptake protein and related DNA-binding protein	L	Contig2819	Stro1942	COG1555	50	2e-07
DNA uptake protein and related DNA-binding protein	L	Contig2819	Stro3469	COG1555	100	2e-22
Endonuclease IV	L	Contig2819	Stro0340	COG0648	56	2e-09
Endonuclease IV	L	Contig2819	Stro3254	COG0648	189	2e-49
Endonuclease IV	L	Contig2819	Stro4557	COG0648	173	1e-44
ERCC4-like helicase	L	Contig2819	Stro0376	COG1111	55	2e-08
ERCC4-like helicase	L	Contig2819	Stro0379	COG1111	58	1e-09
ERCC4-like helicase	L	Contig2819	Stro0884	COG1111	39	0.002
ERCC4-like helicase	L	Contig2819	Stro1279	COG1111	45	2e-05
ERCC4-like helicase	L	Contig2819	Stro1406	COG1111	56	1e-08
ERCC4-like helicase	L	Contig2819	Stro1473	COG1111	36	0.006
ERCC4-like helicase	L	Contig2819	Stro1732	COG1111	38	0.005
ERCC4-like helicase	L	Contig2819	Stro2106	COG1111	59	8e-10
ERCC4-like helicase	L	Contig2819	Stro2256	COG1111	47	7e-06
ERCC4-like helicase	L	Contig2819	Stro3105	COG1111	40	4e-04
ERCC4-like helicase	L	Contig2819	Stro3137	COG1111	58	2e-09
ERCC4-like helicase	L	Contig2819	Stro3950	COG1111	39	0.001
ERCC4-like helicase	L	Contig2819	Stro4033	COG1111	46	8e-06
ERCC4-like helicase	L	Contig2819	Stro4088	COG1111	55	1e-08
ERCC4-like helicase	L	Contig2819	Stro4202	COG1111	56	5e-09
ERCC4-type nuclease	L	Contig2819	Stro1217	COG1948	45	3e-05
ERCC4-type nuclease	L	Contig2819	Stro3109	COG1948	49	1e-06
ERCC4-type nuclease	L	Contig2819	Stro4270	COG1948	36	0.005
Excinuclease ATPase subunit	L	Contig2819	Stro0219	COG0178	44	1e-05
Excinuclease ATPase subunit	L	Contig2819	Stro0220	COG0178	44	2e-05
Excinuclease ATPase subunit	L	Contig2819	Stro0249	COG0178	41	2e-04
Excinuclease ATPase subunit	L	Contig2819	Stro0256	COG0178	47	7e-06
Excinuclease ATPase subunit	L	Contig2819	Stro0289	COG0178	36	0.004
Excinuclease ATPase subunit	L	Contig2819	Stro0397	COG0178	53	3e-08
Excinuclease ATPase subunit	L	Contig2819	Stro0435	COG0178	41	2e-04
Excinuclease ATPase subunit	L	Contig2819	Stro0503	COG0178	53	2e-08
Excinuclease ATPase subunit	L	Contig2819	Stro0617	COG0178	44	2e-05
Excinuclease ATPase subunit	L	Contig2819	Stro0750	COG0178	46	5e-06
Excinuclease ATPase subunit	L	Contig2819	Stro0763	COG0178	64	3e-11
Excinuclease ATPase subunit	L	Contig2819	Stro0784	COG0178	43	7e-05
Excinuclease ATPase subunit	L	Contig2819	Stro0808	COG0178	61	3e-10
Excinuclease ATPase subunit	L	Contig2819	Stro0822	COG0178	49	8e-07
Excinuclease ATPase subunit	L	Contig2819	Stro0823	COG0178	40	4e-04
Excinuclease ATPase subunit	L	Contig2819	Stro0842	COG0178	41	4e-04
Excinuclease ATPase subunit	L	Contig2819	Stro0843	COG0178	44	3e-05
Excinuclease ATPase subunit	L	Contig2819	Stro0982	COG0178	44	7e-06
Excinuclease ATPase subunit	L	Contig2819	Stro1119	COG0178	40	2e-04
Excinuclease ATPase subunit	L	Contig2819	Stro1201	COG0178	41	1e-04
Excinuclease ATPase subunit	L	Contig2819	Stro1342	COG0178	42	3e-05
Excinuclease ATPase subunit	L	Contig2819	Stro1357	COG0178	39	0.002
Excinuclease ATPase subunit	L	Contig2819	Stro1431	COG0178	54	1e-08
Excinuclease ATPase subunit	L	Contig2819	Stro1524	COG0178	58	2e-09
Excinuclease ATPase subunit	L	Contig2819	Stro1628	COG0178	57	9e-10
Excinuclease ATPase subunit	L	Contig2819	Stro1635	COG0178	43	3e-05
Excinuclease ATPase subunit	L	Contig2819	Stro1641	COG0178	45	7e-06
Excinuclease ATPase subunit	L	Contig2819	Stro1672	COG0178	45	7e-06
Excinuclease ATPase subunit	L	Contig2819	Stro1673	COG0178	57	1e-09
Excinuclease ATPase subunit	L	Contig2819	Stro1795	COG0178	38	0.001
Excinuclease ATPase subunit	L	Contig2819	Stro1801	COG0178	55	5e-09
Excinuclease ATPase subunit	L	Contig2819	Stro1802	COG0178	58	7e-10
Excinuclease ATPase subunit	L	Contig2819	Stro1968	COG0178	44	1e-05
Excinuclease ATPase subunit	L	Contig2819	Stro2005	COG0178	37	0.003
Excinuclease ATPase subunit	L	Contig2819	Stro2015	COG0178	59	9e-10
Excinuclease ATPase subunit	L	Contig2819	Stro2035	COG0178	47	1e-06
Excinuclease ATPase subunit	L	Contig2819	Stro2175	COG0178	36	0.004
Excinuclease ATPase subunit	L	Contig2819	Stro2208	COG0178	52	1e-07
Excinuclease ATPase subunit	L	Contig2819	Stro2234	COG0178	48	6e-07
Excinuclease ATPase subunit	L	Contig2819	Stro2335	COG0178	707	0.0
Excinuclease ATPase subunit	L	Contig2819	Stro2402	COG0178	55	1e-08
Excinuclease ATPase subunit	L	Contig2819	Stro2430	COG0178	43	3e-05
Excinuclease ATPase subunit	L	Contig2819	Stro2540	COG0178	36	0.003
Excinuclease ATPase subunit	L	Contig2819	Stro2547	COG0178	47	2e-06
Excinuclease ATPase subunit	L	Contig2819	Stro2555	COG0178	60	2e-10
Excinuclease ATPase subunit	L	Contig2819	Stro2585	COG0178	35	0.006
Excinuclease ATPase subunit	L	Contig2819	Stro2592	COG0178	52	6e-08
Excinuclease ATPase subunit	L	Contig2819	Stro2650	COG0178	67	3e-12
Excinuclease ATPase subunit	L	Contig2819	Stro2760	COG0178	42	3e-05
Excinuclease ATPase subunit	L	Contig2819	Stro2841	COG0178	64	4e-11
Excinuclease ATPase subunit	L	Contig2819	Stro2842	COG0178	59	1e-09
Excinuclease ATPase subunit	L	Contig2819	Stro3071	COG0178	54	3e-08
Excinuclease ATPase subunit	L	Contig2819	Stro3074	COG0178	44	4e-05
Excinuclease ATPase subunit	L	Contig2819	Stro3111	COG0178	1538	0.0
Excinuclease ATPase subunit	L	Contig2819	Stro3146	COG0178	50	1e-07
Excinuclease ATPase subunit	L	Contig2819	Stro3147	COG0178	62	6e-11
Excinuclease ATPase subunit	L	Contig2819	Stro3162	COG0178	55	6e-09
Excinuclease ATPase subunit	L	Contig2819	Stro3177	COG0178	52	3e-08
Excinuclease ATPase subunit	L	Contig2819	Stro3180	COG0178	45	1e-05
Excinuclease ATPase subunit	L	Contig2819	Stro3181	COG0178	41	3e-04
Excinuclease ATPase subunit	L	Contig2819	Stro3423	COG0178	56	5e-09
Excinuclease ATPase subunit	L	Contig2819	Stro3438	COG0178	56	2e-09
Excinuclease ATPase subunit	L	Contig2819	Stro3443	COG0178	69	5e-13
Excinuclease ATPase subunit	L	Contig2819	Stro3542	COG0178	46	8e-06
Excinuclease ATPase subunit	L	Contig2819	Stro3622	COG0178	45	6e-06
Excinuclease ATPase subunit	L	Contig2819	Stro3688	COG0178	37	0.001
Excinuclease ATPase subunit	L	Contig2819	Stro3785	COG0178	45	2e-05
Excinuclease ATPase subunit	L	Contig2819	Stro3786	COG0178	39	0.002
Excinuclease ATPase subunit	L	Contig2819	Stro3790	COG0178	45	6e-06
Excinuclease ATPase subunit	L	Contig2819	Stro3799	COG0178	42	5e-05
Excinuclease ATPase subunit	L	Contig2819	Stro3800	COG0178	51	2e-07
Excinuclease ATPase subunit	L	Contig2819	Stro3819	COG0178	56	4e-09
Excinuclease ATPase subunit	L	Contig2819	Stro3820	COG0178	44	1e-05
Excinuclease ATPase subunit	L	Contig2819	Stro3847	COG0178	63	2e-11
Excinuclease ATPase subunit	L	Contig2819	Stro3879	COG0178	37	0.002
Excinuclease ATPase subunit	L	Contig2819	Stro3891	COG0178	44	4e-05
Excinuclease ATPase subunit	L	Contig2819	Stro4079	COG0178	66	3e-12
Excinuclease ATPase subunit	L	Contig2819	Stro4130	COG0178	37	0.002
Excinuclease ATPase subunit	L	Contig2819	Stro4172	COG0178	54	3e-08
Excinuclease ATPase subunit	L	Contig2819	Stro4185	COG0178	49	4e-07
Excinuclease ATPase subunit	L	Contig2819	Stro4234	COG0178	51	9e-08
Excinuclease ATPase subunit	L	Contig2819	Stro4291	COG0178	39	6e-04
Excinuclease ATPase subunit	L	Contig2819	Stro4339	COG0178	50	6e-07
Excinuclease ATPase subunit	L	Contig2819	Stro4384	COG0178	49	4e-07
Excinuclease ATPase subunit	L	Contig2819	Stro4400	COG0178	67	4e-12
Excinuclease ATPase subunit	L	Contig2819	Stro4410	COG0178	50	6e-07
Excinuclease ATPase subunit	L	Contig2819	Stro4444	COG0178	59	1e-09
Excinuclease ATPase subunit	L	Contig2819	Stro4445	COG0178	54	2e-08
Exonuclease III	L	Contig2819	Stro1244	COG0708	35	0.010
Exonuclease III	L	Contig2819	Stro1736	COG0708	280	6e-77
Exonuclease V gamma subunit	L	Contig2819	Stro3817	COG1330	41	3e-04
Exonuclease VII large subunit	L	Contig2819	Stro0878	COG1570	351	5e-98
Exonuclease VII small subunit	L	Contig2819	Stro0877	COG1722	46	7e-07
FOG: Transposase	L	Contig2819	Stro1506	COG5659	32	0.009
FOG: Transposase	L	Contig2819	Stro1508	COG5659	42	4e-05
FOG: Transposase	L	Contig2819	Stro1937	COG5659	93	9e-21
FOG: Transposase	L	Contig2819	Stro2753	COG5659	85	8e-18
Formamidopyrimidine-DNA glycosylase	L	Contig2819	Stro1288	COG0266	285	2e-78
Formamidopyrimidine-DNA glycosylase	L	Contig2819	Stro4491	COG0266	173	9e-45
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro0376	COG0556	39	0.001
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro0379	COG0556	41	3e-04
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro0884	COG0556	76	2e-14
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro1279	COG0556	44	5e-05
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro2106	COG0556	44	2e-05
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro2156	COG0556	40	8e-04
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro3109	COG0556	44	4e-05
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro3137	COG0556	1032	0.0
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro4033	COG0556	37	0.005
Helicase subunit of the DNA excision repair complex	L	Contig2819	Stro4202	COG0556	46	5e-06
Holliday junction resolvasome DNA-binding subunit	L	Contig2819	Stro1809	COG0632	178	4e-46
Holliday junction resolvasome endonuclease subunit	L	Contig2819	Stro1808	COG0817	150	4e-38
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro0213	COG2255	51	3e-07
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro0467	COG2255	52	8e-08
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro0902	COG2255	40	3e-04
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro0955	COG2255	34	0.006
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro1245	COG2255	43	4e-05
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro1810	COG2255	471	1.0e-134
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro1824	COG2255	65	1e-11
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro2241	COG2255	38	0.002
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro2912	COG2255	37	0.001
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro2952	COG2255	34	0.002
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro3028	COG2255	37	0.002
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro3232	COG2255	36	0.005
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro3497	COG2255	46	6e-06
Holliday junction resolvasome helicase subunit	L	Contig2819	Stro4308	COG2255	47	4e-06
HrpA-like helicase	L	Contig2819	Stro0379	COG1643	42	1e-04
HrpA-like helicase	L	Contig2819	Stro0884	COG1643	38	0.005
HrpA-like helicase	L	Contig2819	Stro1712	COG1643	742	0.0
HrpA-like helicase	L	Contig2819	Stro1744	COG1643	556	1.0e-159
HrpA-like helicase	L	Contig2819	Stro2106	COG1643	42	1e-04
HrpA-like helicase	L	Contig2819	Stro2256	COG1643	42	2e-04
Integrase	L	Contig2819	Stro0058	COG0582	36	0.005
Integrase	L	Contig2819	Stro1317	COG0582	60	3e-10
Integrase	L	Contig2819	Stro1924	COG0582	80	2e-16
Integrase	L	Contig2819	Stro1931	COG0582	46	1e-06
Integrase	L	Contig2819	Stro1936	COG0582	41	5e-05
Integrase	L	Contig2819	Stro2334	COG0582	43	3e-05
Integrase	L	Contig2819	Stro2347	COG0582	43	2e-05
Methylated DNA-protein cysteine methyltransferase	L	Contig2819	Stro0387	COG0350	34	0.003
Methylated DNA-protein cysteine methyltransferase	L	Contig2819	Stro3784	COG0350	115	1e-27
Methylated DNA-protein cysteine methyltransferase	L	Contig2819	Stro4570	COG0350	138	2e-34
Mg-dependent DNase	L	Contig2819	Stro0781	COG0084	239	2e-64
Mismatch repair ATPase (MutS family)	L	Contig2819	Stro0750	COG0249	36	0.009
Mismatch repair ATPase (MutS family)	L	Contig2819	Stro1628	COG0249	34	0.009
Mismatch repair ATPase (MutS family)	L	Contig2819	Stro2547	COG0249	37	0.002
N6-adenine-specific methylase	L	Contig2819	Stro0104	COG0742	38	0.002
N6-adenine-specific methylase	L	Contig2819	Stro1281	COG0742	176	1e-45
N6-adenine-specific methylase	L	Contig2819	Stro1488	COG0742	38	0.001
N6-adenine-specific methylase	L	Contig2819	Stro1573	COG0742	41	5e-05
N6-adenine-specific methylase	L	Contig2819	Stro1870	COG0742	36	0.007
N6-adenine-specific methylase	L	Contig2819	Stro2521	COG0742	39	6e-04
N6-adenine-specific methylase	L	Contig2819	Stro3122	COG0742	41	9e-05
N6-adenine-specific methylase	L	Contig2819	Stro3642	COG0742	39	3e-04
N6-adenine-specific methylase	L	Contig2819	Stro3843	COG0742	38	0.001
N6-adenine-specific methylase	L	Contig2819	Stro3892	COG0742	34	0.007
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig2819	Stro0187	COG2816	200	1e-52
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig2819	Stro1261	COG2816	38	0.001
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig2819	Stro1988	COG2816	36	0.001
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig2819	Stro3745	COG2816	182	2e-47
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig2819	Stro3770	COG2816	36	0.002
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig2819	Stro3974	COG2816	48	3e-07
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro0069	COG0494	50	1e-07
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro0941	COG0494	52	4e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro1129	COG0494	47	9e-07
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro1261	COG0494	45	5e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro1921	COG0494	50	9e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro1988	COG0494	46	2e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro1992	COG0494	40	1e-04
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro2445	COG0494	52	3e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro3288	COG0494	45	5e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro3770	COG0494	46	2e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro3830	COG0494	42	6e-05
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro3831	COG0494	48	8e-07
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro3974	COG0494	54	7e-09
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro4317	COG0494	37	0.001
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig2819	Stro4370	COG0494	37	0.001
Nuclease subunit of the excinuclease complex	L	Contig2819	Stro1217	COG0322	45	2e-05
Nuclease subunit of the excinuclease complex	L	Contig2819	Stro3109	COG0322	607	1.0e-174
Nuclease subunit of the excinuclease complex	L	Contig2819	Stro3137	COG0322	44	5e-05
Nuclease subunit of the excinuclease complex	L	Contig2819	Stro3286	COG0322	172	6e-44
Nucleosome binding factor SPN SPT16 subunit	L	Contig2819	Stro0703	COG5406	36	0.002
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig2819	Stro2510	COG0389	37	0.002
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig2819	Stro3236	COG0389	295	4e-81
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig2819	Stro3240	COG0389	78	2e-15
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig2819	Stro0902	COG1241	43	2e-05
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig2819	Stro1245	COG1241	40	3e-04
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig2819	Stro1319	COG1241	45	1e-05
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig2819	Stro2527	COG1241	50	7e-07
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig2819	Stro2868	COG1241	40	2e-04
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig2819	Stro2912	COG1241	39	6e-04
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig2819	Stro3497	COG1241	37	0.002
Predicted ATP-dependent endonuclease of the OLD family	L	Contig2819	Stro0005	COG3593	49	7e-07
Predicted ATP-dependent endonuclease of the OLD family	L	Contig2819	Stro1291	COG3593	50	1e-06
Predicted ATP-dependent endonuclease of the OLD family	L	Contig2819	Stro1913	COG3593	37	0.004
Predicted ATP-dependent endonuclease of the OLD family	L	Contig2819	Stro2555	COG3593	35	0.006
Predicted DNA alkylation repair protein	L	Contig2819	Stro2046	COG4912	77	4e-15
Predicted DNA modification methylase	L	Contig2819	Stro0183	COG1041	38	6e-04
Predicted DNA modification methylase	L	Contig2819	Stro0954	COG1041	43	2e-05
Predicted DNA modification methylase	L	Contig2819	Stro2300	COG1041	41	7e-05
Predicted DNA modification methylase	L	Contig2819	Stro2447	COG1041	49	3e-07
Predicted DNA modification methylase	L	Contig2819	Stro2521	COG1041	40	4e-04
Predicted DNA modification methylase	L	Contig2819	Stro2596	COG1041	42	5e-05
Predicted DNA modification methylase	L	Contig2819	Stro2808	COG1041	50	3e-07
Predicted DNA modification methylase	L	Contig2819	Stro3055	COG1041	43	3e-05
Predicted DNA modification methylase	L	Contig2819	Stro3347	COG1041	36	0.001
Predicted DNA modification methylase	L	Contig2819	Stro3843	COG1041	39	5e-04
Predicted DNA modification methylase	L	Contig2819	Stro4067	COG1041	56	3e-09
Predicted EndoIII-related endonuclease	L	Contig2819	Stro0568	COG0177	59	1e-09
Predicted EndoIII-related endonuclease	L	Contig2819	Stro2390	COG0177	44	1e-05
Predicted EndoIII-related endonuclease	L	Contig2819	Stro4274	COG0177	111	6e-26
Predicted EndoIII-related endonuclease	L	Contig2819	Stro4319	COG0177	264	5e-72
Predicted endonuclease distantly related to Holliday junction resolvase	L	Contig2819	Stro1320	COG0792	99	5e-23
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)	L	Contig2819	Stro1829	COG0816	116	1e-27
Predicted eukaryotic-type DNA primase	L	Contig2819	Stro1543	COG3285	297	8e-82
Predicted eukaryotic-type DNA primase	L	Contig2819	Stro2095	COG3285	268	5e-73
Predicted eukaryotic-type DNA primase	L	Contig2819	Stro3663	COG3285	212	2e-56
Predicted eukaryotic-type DNA primase	L	Contig2819	Stro3967	COG3285	242	3e-65
Predicted exonuclease	L	Contig2819	Stro0517	COG3359	55	5e-09
Predicted HD superfamily hydrolase possibly a nuclease	L	Contig2819	Stro1001	COG2254	42	1e-04
Predicted methylated DNA-protein cysteine methyltransferase	L	Contig2819	Stro0387	COG3695	54	2e-09
Predicted methylated DNA-protein cysteine methyltransferase	L	Contig2819	Stro3784	COG3695	49	1e-07
Predicted methylated DNA-protein cysteine methyltransferase	L	Contig2819	Stro4570	COG3695	56	2e-09
Predicted N6-adenine-specific DNA methylase	L	Contig2819	Stro2596	COG0116	38	5e-04
Predicted N6-adenine-specific DNA methylase	L	Contig2819	Stro3843	COG0116	36	0.005
Predicted NTP pyrophosphohydrolase	L	Contig2819	Stro0069	COG4119	38	8e-04
Predicted NTP pyrophosphohydrolase	L	Contig2819	Stro1261	COG4119	52	5e-08
Predicted NTP pyrophosphohydrolase	L	Contig2819	Stro1988	COG4119	33	0.008
Predicted NTP pyrophosphohydrolase	L	Contig2819	Stro3830	COG4119	37	0.003
Predicted NTP pyrophosphohydrolase	L	Contig2819	Stro3831	COG4119	36	0.005
Predicted nuclease of the RecB family	L	Contig2819	Stro1320	COG1637	35	0.001
Predicted nuclease of the RecB family	L	Contig2819	Stro3620	COG1637	216	1e-57
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	Contig2819	Stro1318	COG0758	208	6e-55
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	Contig2819	Stro3751	COG0758	36	0.004
Predicted site-specific integrase-resolvase	L	Contig2819	Stro0161	COG2452	43	3e-06
Predicted site-specific integrase-resolvase	L	Contig2819	Stro1645	COG2452	40	1e-04
Predicted site-specific integrase-resolvase	L	Contig2819	Stro2544	COG2452	34	0.006
Predicted site-specific integrase-resolvase	L	Contig2819	Stro4091	COG2452	45	2e-06
Predicted site-specific integrase-resolvase	L	Contig2819	Stro4137	COG2452	36	0.003
Rad3-related DNA helicase	L	Contig2819	Stro0280	COG1199	368	1.0e-103
Rad3-related DNA helicase	L	Contig2819	Stro0379	COG1199	38	0.002
Rad3-related DNA helicase	L	Contig2819	Stro4033	COG1199	39	0.001
RecA-family ATPase	L	Contig2819	Stro0060	COG3598	57	3e-09
RecA/RadA recombinase	L	Contig2819	Stro1425	COG0468	309	2e-85
RecA/RadA recombinase	L	Contig2819	Stro4269	COG0468	47	2e-06
RecB family exonuclease	L	Contig2819	Stro0737	COG2887	57	1e-09
RecB family exonuclease	L	Contig2819	Stro1000	COG1468	82	3e-17
RecB family exonuclease	L	Contig2819	Stro2236	COG1468	41	1e-04
RecB family exonuclease	L	Contig2819	Stro2236	COG2887	117	8e-28
RecB family exonuclease	L	Contig2819	Stro3748	COG2887	63	1e-10
RecB family exonuclease	L	Contig2819	Stro3749	COG2887	54	7e-08
RecG-like helicase	L	Contig2819	Stro0379	COG1200	52	1e-07
RecG-like helicase	L	Contig2819	Stro0884	COG1200	337	2e-93
RecG-like helicase	L	Contig2819	Stro1279	COG1200	658	0.0
RecG-like helicase	L	Contig2819	Stro1732	COG1200	38	0.004
RecG-like helicase	L	Contig2819	Stro1744	COG1200	42	2e-04
RecG-like helicase	L	Contig2819	Stro2106	COG1200	68	2e-12
RecG-like helicase	L	Contig2819	Stro2256	COG1200	36	0.010
RecG-like helicase	L	Contig2819	Stro3137	COG1200	37	0.005
RecG-like helicase	L	Contig2819	Stro4033	COG1200	48	4e-06
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig2819	Stro0115	COG1107	45	1e-05
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig2819	Stro1706	COG1107	39	0.002
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig2819	Stro3455	COG1107	44	2e-05
Recombinational DNA repair ATPase (RecF pathway)	L	Contig2819	Stro0005	COG1195	320	1e-88
Recombinational DNA repair ATPase (RecF pathway)	L	Contig2819	Stro1291	COG1195	59	2e-09
Recombinational DNA repair ATPase (RecF pathway)	L	Contig2819	Stro1628	COG1195	35	0.007
Recombinational DNA repair ATPase (RecF pathway)	L	Contig2819	Stro1913	COG1195	37	0.003
Recombinational DNA repair ATPase (RecF pathway)	L	Contig2819	Stro1968	COG1195	37	0.002
Recombinational DNA repair ATPase (RecF pathway)	L	Contig2819	Stro3579	COG1195	36	0.005
Recombinational DNA repair ATPase (RecF pathway)	L	Contig2819	Stro3788	COG1195	36	0.004
Recombinational DNA repair protein (RecE pathway)	L	Contig2819	Stro4008	COG3723	74	2e-14
Recombinational DNA repair protein (RecF pathway)	L	Contig2819	Stro0215	COG0353	280	4e-77
Recombinational DNA repair protein (RecF pathway)	L	Contig2819	Stro3447	COG1381	172	3e-44
Retron-type reverse transcriptase	L	Contig2819	Stro4139	COG3344	178	9e-46
Reverse gyrase	L	Contig2819	Stro0379	COG1110	44	4e-05
Reverse gyrase	L	Contig2819	Stro0884	COG1110	47	8e-06
Reverse gyrase	L	Contig2819	Stro3137	COG1110	41	2e-04
Reverse gyrase	L	Contig2819	Stro4027	COG1110	267	3e-72
Serine/threonine protein kinase	L	Contig2819	Stro0047	COG0515	172	4e-44
Serine/threonine protein kinase	L	Contig2819	Stro0048	COG0515	187	2e-48
Serine/threonine protein kinase	L	Contig2819	Stro0602	COG0515	41	2e-04
Serine/threonine protein kinase	L	Contig2819	Stro0831	COG0515	148	1e-36
Serine/threonine protein kinase	L	Contig2819	Stro0852	COG0515	159	4e-40
Serine/threonine protein kinase	L	Contig2819	Stro2112	COG0515	168	6e-43
Serine/threonine protein kinase	L	Contig2819	Stro3253	COG0515	164	2e-41
Serine/threonine protein kinase	L	Contig2819	Stro4344	COG0515	139	4e-34
Serine/threonine protein kinase	L	Contig2819	Stro4576	COG0515	64	3e-11
Site-specific DNA methylase	L	Contig2819	Stro0061	COG0270	131	3e-32
Site-specific DNA methylase	L	Contig2819	Stro0568	COG0270	203	3e-53
Site-specific DNA methylase	L	Contig2819	Stro1281	COG0270	36	0.002
Site-specific DNA methylase	L	Contig2819	Stro1573	COG0270	37	0.001
Site-specific recombinase DNA invertase Pin homologs	L	Contig2819	Stro1983	COG1961	124	2e-29
Site-specific recombinase DNA invertase Pin homologs	L	Contig2819	Stro4137	COG1961	121	4e-29
Site-specific recombinase DNA invertase Pin homologs	L	Contig2819	Stro4155	COG1961	33	0.004
Site-specific recombinase XerC	L	Contig2819	Stro0058	COG4973	51	1e-07
Site-specific recombinase XerC	L	Contig2819	Stro0749	COG4973	35	0.005
Site-specific recombinase XerC	L	Contig2819	Stro1317	COG4973	211	5e-56
Site-specific recombinase XerC	L	Contig2819	Stro1924	COG4973	239	2e-64
Site-specific recombinase XerC	L	Contig2819	Stro1931	COG4973	44	8e-06
Site-specific recombinase XerC	L	Contig2819	Stro1936	COG4973	46	1e-06
Site-specific recombinase XerC	L	Contig2819	Stro1980	COG4973	60	5e-11
Site-specific recombinase XerC	L	Contig2819	Stro2334	COG4973	113	2e-26
Site-specific recombinase XerC	L	Contig2819	Stro2347	COG4973	114	8e-27
Site-specific recombinase XerC	L	Contig2819	Stro2908	COG4973	54	5e-09
Site-specific recombinase XerC	L	Contig2819	Stro3352	COG4973	32	0.008
Site-specific recombinase XerC	L	Contig2819	Stro3417	COG4973	37	3e-04
Site-specific recombinase XerC	L	Contig2819	Stro4016	COG4973	38	0.002
Site-specific recombinase XerD	L	Contig2819	Stro0058	COG4974	53	4e-08
Site-specific recombinase XerD	L	Contig2819	Stro0559	COG4974	43	6e-05
Site-specific recombinase XerD	L	Contig2819	Stro0749	COG4974	34	0.008
Site-specific recombinase XerD	L	Contig2819	Stro1317	COG4974	260	8e-71
Site-specific recombinase XerD	L	Contig2819	Stro1924	COG4974	334	7e-93
Site-specific recombinase XerD	L	Contig2819	Stro1931	COG4974	58	7e-10
Site-specific recombinase XerD	L	Contig2819	Stro1936	COG4974	62	2e-11
Site-specific recombinase XerD	L	Contig2819	Stro1980	COG4974	68	2e-13
Site-specific recombinase XerD	L	Contig2819	Stro2334	COG4974	134	8e-33
Site-specific recombinase XerD	L	Contig2819	Stro2347	COG4974	159	2e-40
Site-specific recombinase XerD	L	Contig2819	Stro2908	COG4974	61	3e-11
Site-specific recombinase XerD	L	Contig2819	Stro3352	COG4974	37	2e-04
Site-specific recombinase XerD	L	Contig2819	Stro3417	COG4974	52	9e-09
Site-specific recombinase XerD	L	Contig2819	Stro4016	COG4974	46	6e-06
Superfamily I DNA and RNA helicase	L	Contig2819	Stro0230	COG0210	36	0.007
Superfamily I DNA and RNA helicase	L	Contig2819	Stro1592	COG0210	41	4e-04
Superfamily I DNA and RNA helicase	L	Contig2819	Stro3388	COG0210	44	4e-05
Superfamily I DNA and RNA helicase	L	Contig2819	Stro3739	COG0210	352	6e-98
Superfamily I DNA and RNA helicase	L	Contig2819	Stro3748	COG0210	302	1e-82
Superfamily I DNA and RNA helicase	L	Contig2819	Stro3749	COG0210	260	5e-70
Superfamily I DNA and RNA helicase	L	Contig2819	Stro3817	COG0210	624	1.0e-180
Superfamily I DNA and RNA helicase	L	Contig2819	Stro4077	COG0210	45	2e-05
Superfamily I DNA and RNA helicase	L	Contig2819	Stro4539	COG0210	323	4e-89
Superfamily II DNA and RNA helicase	L	Contig2819	Stro0376	COG0513	87	4e-18
Superfamily II DNA and RNA helicase	L	Contig2819	Stro0379	COG0513	395	1.0e-111
Superfamily II DNA and RNA helicase	L	Contig2819	Stro0884	COG0513	78	3e-15
Superfamily II DNA and RNA helicase	L	Contig2819	Stro1279	COG0513	67	3e-12
Superfamily II DNA and RNA helicase	L	Contig2819	Stro1406	COG0513	108	4e-24
Superfamily II DNA and RNA helicase	L	Contig2819	Stro1712	COG0513	45	4e-05
Superfamily II DNA and RNA helicase	L	Contig2819	Stro1732	COG0513	57	8e-09
Superfamily II DNA and RNA helicase	L	Contig2819	Stro1744	COG0513	44	6e-05
Superfamily II DNA and RNA helicase	L	Contig2819	Stro2106	COG0513	408	1.0e-115
Superfamily II DNA and RNA helicase	L	Contig2819	Stro2256	COG0513	49	1e-06
Superfamily II DNA and RNA helicase	L	Contig2819	Stro3105	COG0513	99	1e-21
Superfamily II DNA and RNA helicase	L	Contig2819	Stro3137	COG0513	67	4e-12
Superfamily II DNA and RNA helicase	L	Contig2819	Stro3950	COG0513	49	6e-07
Superfamily II DNA and RNA helicase	L	Contig2819	Stro4033	COG0513	81	3e-16
Superfamily II DNA and RNA helicase	L	Contig2819	Stro4088	COG0513	344	6e-96
Superfamily II DNA and RNA helicase	L	Contig2819	Stro4202	COG0513	318	4e-88
Superfamily II DNA helicase	L	Contig2819	Stro0280	COG0514	45	2e-05
Superfamily II DNA helicase	L	Contig2819	Stro0376	COG0514	355	7e-99
Superfamily II DNA helicase	L	Contig2819	Stro0379	COG0514	103	3e-23
Superfamily II DNA helicase	L	Contig2819	Stro0884	COG0514	43	9e-05
Superfamily II DNA helicase	L	Contig2819	Stro1279	COG0514	46	6e-06
Superfamily II DNA helicase	L	Contig2819	Stro1406	COG0514	82	5e-16
Superfamily II DNA helicase	L	Contig2819	Stro1528	COG0514	37	0.003
Superfamily II DNA helicase	L	Contig2819	Stro1732	COG0514	60	1e-09
Superfamily II DNA helicase	L	Contig2819	Stro2106	COG0514	111	9e-26
Superfamily II DNA helicase	L	Contig2819	Stro2256	COG0514	47	7e-06
Superfamily II DNA helicase	L	Contig2819	Stro3105	COG0514	683	0.0
Superfamily II DNA helicase	L	Contig2819	Stro3137	COG0514	54	4e-08
Superfamily II DNA helicase	L	Contig2819	Stro3739	COG0514	65	2e-11
Superfamily II DNA helicase	L	Contig2819	Stro4033	COG0514	100	4e-22
Superfamily II DNA helicase	L	Contig2819	Stro4088	COG0514	85	1e-17
Superfamily II DNA helicase	L	Contig2819	Stro4202	COG0514	83	5e-17
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig2819	Stro0379	COG4098	39	9e-04
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig2819	Stro0884	COG4098	69	2e-12
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig2819	Stro1279	COG4098	44	3e-05
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig2819	Stro3137	COG4098	50	5e-07
Superfamily II DNA/RNA helicase SNF2 family	L	Contig2819	Stro3363	COG0553	390	1.0e-109
Superfamily II DNA/RNA helicase SNF2 family	L	Contig2819	Stro3950	COG0553	37	0.004
Superfamily II RNA helicase	L	Contig2819	Stro1279	COG4581	41	2e-04
Superfamily II RNA helicase	L	Contig2819	Stro1406	COG4581	76	2e-14
Superfamily II RNA helicase	L	Contig2819	Stro1732	COG4581	239	1e-63
Superfamily II RNA helicase	L	Contig2819	Stro2106	COG4581	41	2e-04
Superfamily II RNA helicase	L	Contig2819	Stro2256	COG4581	694	0.0
Superfamily II RNA helicase	L	Contig2819	Stro3950	COG4581	48	2e-06
Superfamily II RNA helicase	L	Contig2819	Stro4088	COG4581	36	0.006
Topoisomerase IB	L	Contig2819	Stro1767	COG3569	185	5e-48
Transcription-repair coupling factor (superfamily II helicase)	L	Contig2819	Stro0884	COG1197	1179	0.0
Transcription-repair coupling factor (superfamily II helicase)	L	Contig2819	Stro1279	COG1197	319	4e-88
Transcription-repair coupling factor (superfamily II helicase)	L	Contig2819	Stro2106	COG1197	40	4e-04
Transcription-repair coupling factor (superfamily II helicase)	L	Contig2819	Stro3137	COG1197	116	4e-27
Transcription-repair coupling factor (superfamily II helicase)	L	Contig2819	Stro4262	COG1197	42	2e-05
Transposase and inactivated derivatives	L	Contig2819	Stro0586	COG3328	264	8e-72
Transposase and inactivated derivatives	L	Contig2819	Stro0587	COG3328	35	0.002
Transposase and inactivated derivatives	L	Contig2819	Stro1932	COG2801	71	9e-14
Transposase and inactivated derivatives	L	Contig2819	Stro1933	COG2963	39	6e-05
Transposase and inactivated derivatives	L	Contig2819	Stro1944	COG3335	39	1e-04
Transposase and inactivated derivatives	L	Contig2819	Stro1950	COG3293	44	7e-06
Transposase and inactivated derivatives	L	Contig2819	Stro2021	COG3335	45	1e-05
Transposase and inactivated derivatives	L	Contig2819	Stro2661	COG3293	45	2e-06
Transposase and inactivated derivatives	L	Contig2819	Stro2845	COG3335	45	1e-05
Transposase and inactivated derivatives	L	Contig2819	Stro2861	COG3547	47	2e-06
Transposase and inactivated derivatives	L	Contig2819	Stro2941	COG3293	60	3e-10
Transposase and inactivated derivatives	L	Contig2819	Stro3350	COG2963	39	6e-05
Transposase and inactivated derivatives	L	Contig2819	Stro3351	COG2801	71	9e-14
Transposase and inactivated derivatives	L	Contig2819	Stro4122	COG3335	45	1e-05
Transposase and inactivated derivatives	L	Contig2819	Stro4138	COG3464	93	5e-20
Transposase and inactivated derivatives	L	Contig2819	Stro4140	COG3293	60	3e-10
Transposase and inactivated derivatives	L	Contig2819	Stro4179	COG3293	60	3e-10
Transposase and inactivated derivatives IS30 family	L	Contig2819	Stro0368	COG2826	175	2e-45
Transposase and inactivated derivatives TnpA family	L	Contig2819	Stro2369	COG4644	84	1e-17
Transposase and inactivated derivatives TnpA family	L	Contig2819	Stro4134	COG4644	159	7e-40
Transposase	L	Contig2819	Stro0994	COG5433	40	3e-04
Uncharacterized protein predicted to be involved in DNA repair	L	Contig2819	Stro0998	COG1343	71	1e-14
Uncharacterized protein predicted to be involved in DNA repair	L	Contig2819	Stro0999	COG1518	239	3e-64
Uncharacterized protein predicted to be involved in DNA repair	L	Contig2819	Stro1003	COG1857	75	6e-15
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig2819	Stro1002	COG1688	40	2e-04
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig2819	Stro1005	COG1583	69	3e-13
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig2819	Stro1007	COG1337	74	3e-14
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig2819	Stro1007	COG1336	48	3e-06
Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)	L	Contig2819	Stro1008	COG1337	58	4e-09
Uncharacterized protein related to Endonuclease III	L	Contig2819	Stro4319	COG2231	76	3e-15
Uracil-DNA glycosylase	L	Contig2819	Stro0899	COG1573	112	4e-26
Uracil DNA glycosylase	L	Contig2819	Stro3854	COG0692	277	4e-76

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