Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 4 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 2 |
| Leu | 5 |
| Lys | 2 |
| Met | 5 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 5 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 1 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig56 | 4 | 451151 ..451226 | 0..0 | 85.83 | 70.28 |
| Ala | GGC | Contig56 | 52 | 66610 ..66535 | 0..0 | 87.23 | 69.29 |
| Ala | TGC | Contig56 | 26 | 5531540..5531465 | 0..0 | 86.35 | 74.13 |
| Ala | TGC | Contig56 | 29 | 5293559..5293484 | 0..0 | 86.35 | 74.13 |
| Arg | ACG | Contig56 | 5 | 693187 ..693263 | 0..0 | 92.98 | 73.98 |
| Arg | CCG | Contig56 | 47 | 891386 ..891310 | 0..0 | 86.37 | 55.76 |
| Arg | CCT | Contig56 | 49 | 515996 ..515920 | 0..0 | 77.28 | 47.85 |
| Arg | TCG | Contig56 | 18 | 3843582..3843658 | 0..0 | 90.16 | 68.68 |
| Arg | TCT | Contig56 | 42 | 3068289..3068213 | 0..0 | 80.78 | 58.74 |
| Asn | GTT | Contig56 | 40 | 3107884..3107810 | 0..0 | 86.74 | 66.13 |
| Asp | GTC | Contig56 | 38 | 3551161..3551085 | 0..0 | 97.02 | 82.50 |
| Cys | GCA | Contig56 | 41 | 3104034..3103961 | 0..0 | 70.06 | 42.02 |
| Gln | CTG | Contig56 | 20 | 4268011..4268084 | 0..0 | 68.86 | 39.93 |
| Gln | TTG | Contig56 | 8 | 1094029..1094103 | 0..0 | 69.86 | 41.15 |
| Glu | CTC | Contig56 | 3 | 397100 ..397174 | 0..0 | 68.86 | 42.27 |
| Glu | TTC | Contig56 | 43 | 3042269..3042195 | 0..0 | 60.15 | 31.71 |
| Gly | CCC | Contig56 | 23 | 5657038..5656965 | 0..0 | 80.62 | 58.67 |
| Gly | GCC | Contig56 | 50 | 287922 ..287848 | 0..0 | 88.17 | 69.67 |
| Gly | TCC | Contig56 | 33 | 3991433..3991360 | 0..0 | 82.33 | 66.40 |
| His | GTG | Contig56 | 30 | 4975237..4975161 | 0..0 | 90.83 | 66.86 |
| Ile | GAT | Contig56 | 25 | 5531650..5531574 | 0..0 | 93.43 | 73.71 |
| Ile | GAT | Contig56 | 28 | 5293669..5293593 | 0..0 | 93.43 | 73.71 |
| Leu | CAA | Contig56 | 48 | 594020 ..593936 | 0..0 | 76.03 | 50.13 |
| Leu | CAG | Contig56 | 1 | 51747 ..51831 | 0..0 | 71.88 | 43.46 |
| Leu | GAG | Contig56 | 35 | 3826909..3826825 | 0..0 | 69.13 | 39.95 |
| Leu | TAA | Contig56 | 31 | 4214608..4214520 | 0..0 | 79.43 | 46.32 |
| Leu | TAG | Contig56 | 37 | 3567960..3567876 | 0..0 | 77.53 | 51.95 |
| Lys | CTT | Contig56 | 13 | 2456816..2456891 | 0..0 | 97.77 | 73.98 |
| Lys | TTT | Contig56 | 39 | 3192806..3192731 | 0..0 | 94.10 | 72.78 |
| Met | CAT | Contig56 | 10 | 1581285..1581361 | 0..0 | 87.89 | 75.34 |
| Met | CAT | Contig56 | 11 | 1968413..1968488 | 0..0 | 86.47 | 64.62 |
| Met | CAT | Contig56 | 12 | 2032646..2032722 | 0..0 | 83.88 | 55.32 |
| Met | CAT | Contig56 | 36 | 3610423..3610347 | 0..0 | 85.16 | 65.28 |
| Met | CAT | Contig56 | 6 | 716008 ..716084 | 0..0 | 68.18 | 45.44 |
| Phe | GAA | Contig56 | 27 | 5400903..5400828 | 0..0 | 88.73 | 66.87 |
| Pro | CGG | Contig56 | 9 | 1345171..1345247 | 0..0 | 86.36 | 60.13 |
| Pro | GGG | Contig56 | 16 | 3286993..3287070 | 0..0 | 79.64 | 51.96 |
| Pro | TGG | Contig56 | 15 | 3046537..3046613 | 0..0 | 79.83 | 55.97 |
| Ser | CGA | Contig56 | 14 | 2524629..2524699 | 0..0 | 33.02 | 17.89 |
| Ser | CGA | Contig56 | 51 | 166134 ..166045 | 0..0 | 78.76 | 47.16 |
| Ser | GCT | Contig56 | 44 | 2925586..2925493 | 0..0 | 76.24 | 47.13 |
| Ser | GGA | Contig56 | 24 | 5534306..5534217 | 0..0 | 76.12 | 49.44 |
| Ser | TGA | Contig56 | 45 | 2886675..2886586 | 0..0 | 79.34 | 46.93 |
| Thr | CGT | Contig56 | 2 | 276776 ..276851 | 0..0 | 97.39 | 74.93 |
| Thr | GGT | Contig56 | 22 | 5411552..5411626 | 0..0 | 89.61 | 62.53 |
| Thr | TGT | Contig56 | 19 | 4135946..4136020 | 0..0 | 83.07 | 58.45 |
| Trp | CCA | Contig56 | 34 | 3961630..3961555 | 0..0 | 91.15 | 66.67 |
| Tyr | GTA | Contig56 | 32 | 4133589..4133504 | 0..0 | 74.36 | 42.73 |
| Undet | ??? | Contig56 | 21 | 4963974..4964048 | 0..0 | 32.59 | 16.20 |
| Val | CAC | Contig56 | 46 | 1946136..1946062 | 0..0 | 81.20 | 58.80 |
| Val | GAC | Contig56 | 7 | 1042801..1042875 | 0..0 | 89.95 | 69.24 |
| Val | TAC | Contig56 | 17 | 3557929..3558005 | 0..0 | 92.05 | 64.77 |
tRNA Models
Contig56.trna1 (51747-51831) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (51781-51783) Score: 71.88
HMM Sc=43.46 Sec struct Sc=28.42
* | * | * | * | * | * | * | * |
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCTGGTTTCAGGTACCAGTGGGTAACaCCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>.....<<..>>>>>.......<<<<<<<<<<<<....
Contig56.trna2 (276776-276851) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (276809-276811) Score: 97.39
HMM Sc=74.93 Sec struct Sc=22.46
* | * | * | * | * | * | * | *
Seq: GCCGCAATAGCTCAGCTGGTAGAGCACGTCATTCGTAATGACGGGGtCGGGGGTTCGAATCCCTCTTGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna3 (397100-397174) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (397133-397135) Score: 68.86
HMM Sc=42.27 Sec struct Sc=26.59
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTAGCGGTtAGGACGCGGCCCTCTCAAGGCTGAAACAGGGGTTCGATTCCCCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig56.trna4 (451151-451226) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (451184-451186) Score: 85.83
HMM Sc=70.28 Sec struct Sc=15.55
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCATCGTTCGCAATGATGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna5 (693187-693263) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (693221-693223) Score: 92.98
HMM Sc=73.98 Sec struct Sc=19.00
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGGGtCAGAGGTTCGAATCCTTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna6 (716008-716084) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (716042-716044) Score: 68.18
HMM Sc=45.44 Sec struct Sc=22.74
* | * | * | * | * | * | * | *
Seq: GGCGGGGAAGAGCAGCCcGGTCGCTCGCCTGGCTCATAACCAGGAGGtCCGCGGTTCAAATCCGCGCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig56.trna7 (1042801-1042875) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (1042833-1042835) Score: 89.95
HMM Sc=69.24 Sec struct Sc=20.71
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGGAGAGCACCTCGTTGACATCGAGGGGGtCACAGGTTCGATCCCTGTCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna8 (1094029-1094103) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (1094061-1094063) Score: 69.86
HMM Sc=41.15 Sec struct Sc=28.71
* | * | * | * | * | * | * |
Seq: TGGGGCGTAGCCAAGCGGTAAGGCAGGGGATTTTGATTCCCCCATgCGGAGGTTCGATCCCTCCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna9 (1345171-1345247) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (1345205-1345207) Score: 86.36
HMM Sc=60.13 Sec struct Sc=26.23
* | * | * | * | * | * | * | *
Seq: CGGAGTGTGGCTCAGCCcGGTAGAGCACTGCGTTCGGGACGCAGGGGtCGCAGGTTCGAATCCTGCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna10 (1581285-1581361) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1581319-1581321) Score: 87.89
HMM Sc=75.34 Sec struct Sc=12.55
* | * | * | * | * | * | * | *
Seq: GGCGGGGTAGCTCAGCTGGTtAGAGCACGGGAATCATAATCCTGGGGtCGGGGGTTCAAGTCCCTCTCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna11 (1968413-1968488) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (1968446-1968448) Score: 86.47
HMM Sc=64.62 Sec struct Sc=21.85
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTtAGAGCCGACCGCTCATAACGGTCTGGtTGCAGGTTCGAATCCTGCCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna12 (2032646-2032722) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (2032680-2032682) Score: 83.88
HMM Sc=55.32 Sec struct Sc=28.56
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig56.trna13 (2456816-2456891) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2456849-2456851) Score: 97.77
HMM Sc=73.98 Sec struct Sc=23.79
* | * | * | * | * | * | * | *
Seq: GGGCGCATAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGtCCCAGGTTCGAGCCCTGGTGCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna14 (2524629-2524699) Length: 71 bp
Type: Ser Anticodon: CGA at 51-53 (2524679-2524681) Score: 33.02
HMM Sc=17.89 Sec struct Sc=15.13
* | * | * | * | * | * | * |
Seq: AGGCTGATAAATGGGACCCGGACTGACTCTTAATCAGCGGGtCCTAGGTTCGAGCCCTAGTGCGCCCACCA
Str: .>>>..>...............>>>>.......<<<<......>>>>>.......<<<<<<..<<<.....
Contig56.trna15 (3046537-3046613) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (3046571-3046573) Score: 79.83
HMM Sc=55.97 Sec struct Sc=23.86
* | * | * | * | * | * | * | *
Seq: CGGGGTATAGCGCAGCCtGGTAGCGCGGCAGTTTTGGGTACTGCAGGtCGTTGGTTCGAATCCAGCTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna16 (3286993-3287070) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (3287028-3287030) Score: 79.64
HMM Sc=51.96 Sec struct Sc=27.68
* | * | * | * | * | * | * | *
Seq: CGGAGCGTGGCGCAGCCcGGTtAGCGCACTAGTCTGGGAGACTAGGGGtCGAAGGTTCAAATCCTTTCGCTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna17 (3557929-3558005) Length: 77 bp
Type: Val Anticodon: TAC at 35-37 (3557963-3557965) Score: 92.05
HMM Sc=64.77 Sec struct Sc=27.28
* | * | * | * | * | * | * | *
Seq: GGGCGGCTAGCTCAGCTGGTtAGAGCATCTCGTTTACACCGAGAGGGtCGGGAGTTCGAATCTCTCGCCGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna18 (3843582-3843658) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (3843616-3843618) Score: 90.16
HMM Sc=68.68 Sec struct Sc=21.48
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGCATCGGATTTCGATTCCGAGGGtCGGAGGTTCGAATCCTTCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna19 (4135946-4136020) Length: 75 bp
Type: Thr Anticodon: TGT at 33-35 (4135978-4135980) Score: 83.07
HMM Sc=58.45 Sec struct Sc=24.62
* | * | * | * | * | * | * |
Seq: GCCGGCGTAGCACAGCGGTAGTGCAGCGGTTTTGTAAACCGAAGGtCGGGAGTTCGATCCTCTCCGCCGGCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig56.trna20 (4268011-4268084) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (4268043-4268045) Score: 68.86
HMM Sc=39.93 Sec struct Sc=28.93
* | * | * | * | * | * | * |
Seq: TGGGGAATGGTGTAATGGTAGCACAACAGACTCTGACTCTGTTTGTCTTGGTTCGAATCCAGGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig56.trna21 (4963974-4964048) Length: 75 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 32.59
HMM Sc=16.20 Sec struct Sc=16.39
* | * | * | * | * | * | * |
Seq: GGCCCGGTGGCGGAAGATtAACGCGGGGGCggTGCAACGCTCTTTtTCCTGGTTCAAGTCCAGGCTGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>........<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig56.trna22 (5411552-5411626) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (5411584-5411586) Score: 89.61
HMM Sc=62.53 Sec struct Sc=27.08
* | * | * | * | * | * | * |
Seq: GCTGCCGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGACAGTTCAATCCTGTCCGGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna23 (5657038-5656965) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (5657006-5657004) Score: 80.62
HMM Sc=58.67 Sec struct Sc=21.95
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGTTCAATGGTAGAACGGCAGCTTCCCAAGCTGCATACGAGGGTTCGATTCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig56.trna24 (5534306-5534217) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (5534272-5534270) Score: 76.12
HMM Sc=49.44 Sec struct Sc=26.68
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCCGAGTGGTtgAAGGCGCACGCCTGGAACGCGTGTATACGGGAAACTGTATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig56.trna25 (5531650-5531574) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (5531616-5531614) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna26 (5531540-5531465) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (5531507-5531505) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig56.trna27 (5400903-5400828) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (5400870-5400868) Score: 88.73
HMM Sc=66.87 Sec struct Sc=21.86
* | * | * | * | * | * | * | *
Seq: GCCCAGGTAGCTCAGTTGGTAGAGCATGCGACTGAAAATCGCAGTGtCGGTGGTTCGATCCCGCCCCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna28 (5293669-5293593) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (5293635-5293633) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna29 (5293559-5293484) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (5293526-5293524) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig56.trna30 (4975237-4975161) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (4975203-4975201) Score: 90.83
HMM Sc=66.86 Sec struct Sc=23.97
* | * | * | * | * | * | * | *
Seq: GCAGTTGTAGCTCAGTTGGTtAGAGCGCCTGTCTGTGGAACAGGAGGtCGGTGGTTCGAGCCCACCCAACTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna31 (4214608-4214520) Length: 89 bp
Type: Leu Anticodon: TAA at 35-37 (4214574-4214572) Score: 79.43
HMM Sc=46.32 Sec struct Sc=33.11
* | * | * | * | * | * | * | * | *
Seq: GCGGGCGTGGCGAAATTGGTaGACGCAAGGGACTTAAAATCCCTCGGCTCGAAAGAGCTgTGCCGGTTCGACCCCGGCCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<...>>>>>.......<<<<<<<<<<<<....
Contig56.trna32 (4133589-4133504) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (4133555-4133553) Score: 74.36
HMM Sc=42.73 Sec struct Sc=31.63
* | * | * | * | * | * | * | * | *
Seq: GGGGGAGTGtCCCGAGTGGCaAAGGGAGCTGACTGTAAATCAGCCGCCTCATGGCTtCGCAGGTTCGAGTCCTGCCTCCCCCACCA
Str: >>>>>>>...>>>..........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig56.trna33 (3991433-3991360) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (3991401-3991399) Score: 82.33
HMM Sc=66.40 Sec struct Sc=15.93
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna34 (3961630-3961555) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (3961597-3961595) Score: 91.15
HMM Sc=66.67 Sec struct Sc=24.48
* | * | * | * | * | * | * | *
Seq: AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGtCGCAGGTTCGAGCCCTGCCACTCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna35 (3826909-3826825) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (3826875-3826873) Score: 69.13
HMM Sc=39.95 Sec struct Sc=29.18
* | * | * | * | * | * | * | * |
Seq: GCGCTCGTGGCGGAATTGGTaGACGCGCTGCCTTGAGGTGGCAGTGAGTAAAATCGTGGGGGTTCGAGTCCCTCCGAGCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
Contig56.trna36 (3610423-3610347) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3610389-3610387) Score: 85.16
HMM Sc=65.28 Sec struct Sc=19.88
* | * | * | * | * | * | * | *
Seq: GGCGGGATAGCGCAGCCcGGTAGCGCGGCGGGCTCATAACCCGCAGGtCGGTGGTTCAAATCCACCTCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig56.trna37 (3567960-3567876) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (3567926-3567924) Score: 77.53
HMM Sc=51.95 Sec struct Sc=25.58
* | * | * | * | * | * | * | * |
Seq: GCGGGCGTGGCGGAATTGGTaGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCGAGTCCCTCCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig56.trna38 (3551161-3551085) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3551127-3551125) Score: 97.02
HMM Sc=82.50 Sec struct Sc=14.52
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGCCCCGTCTCTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna39 (3192806-3192731) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (3192773-3192771) Score: 94.10
HMM Sc=72.78 Sec struct Sc=21.32
* | * | * | * | * | * | * | *
Seq: GAGCGCGTAGCTCAGCCGGTAGAGCACGTGACTTTTAATCATGGGGtCGAGGGTTCGAGTCCCTCCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna40 (3107884-3107810) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (3107852-3107850) Score: 86.74
HMM Sc=66.13 Sec struct Sc=20.61
* | * | * | * | * | * | * |
Seq: TCCCTGGTAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTTGGtCGCTGGTTCGAATCCGGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna41 (3104034-3103961) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (3104002-3104000) Score: 70.06
HMM Sc=42.02 Sec struct Sc=28.04
* | * | * | * | * | * | * |
Seq: GGCCACGTGGCGGAGTGGTTACGCAACGGTCTGCAAAACCGTGTACACCAGTTCAATTCTGGTCGTGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig56.trna42 (3068289-3068213) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (3068255-3068253) Score: 80.78
HMM Sc=58.74 Sec struct Sc=22.04
* | * | * | * | * | * | * | *
Seq: GGTCCCATAGCTCAACTGGAtAGAGTAGCGGATTTCTACTCCGCGGGtTGCAGGTTCGAATCCTGCTGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna43 (3042269-3042195) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (3042236-3042234) Score: 60.15
HMM Sc=31.71 Sec struct Sc=28.44
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTATCGGTtAGGACGCCACCCTTTCACGGTGGAGAGAGCGGTTCGATTCCGCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig56.trna44 (2925586-2925493) Length: 94 bp
Type: Ser Anticodon: GCT at 35-37 (2925552-2925550) Score: 76.24
HMM Sc=47.13 Sec struct Sc=29.11
* | * | * | * | * | * | * | * | * |
Seq: GGAGACGTGGCCGAGTGGCtgAAGGCGGCGGTTTGCTAAACCGTTATAGGGTTGTAAAGCCCTATCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig56.trna45 (2886675-2886586) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (2886641-2886639) Score: 79.34
HMM Sc=46.93 Sec struct Sc=32.41
* | * | * | * | * | * | * | * | *
Seq: GGAAGGGTGGCCGAGTGGTttAAGGCACCGGTCTTGAAAACCGGCGTGCCCGCAAGGGTACCGTGGGTTCGAATCCCACCCCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig56.trna46 (1946136-1946062) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (1946104-1946102) Score: 81.20
HMM Sc=58.80 Sec struct Sc=22.40
* | * | * | * | * | * | * |
Seq: GGGCGCATAGCTCAGCGGGAGAGCGTTCCCTTCACACGGGAGAGGtCCAAGGTTCGATCCCTTGTGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna47 (891386-891310) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (891352-891350) Score: 86.37
HMM Sc=55.76 Sec struct Sc=30.61
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAGGtCACACGTTCGAATCGTGTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna48 (594020-593936) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (593986-593984) Score: 76.03
HMM Sc=50.13 Sec struct Sc=25.90
* | * | * | * | * | * | * | * |
Seq: GCCCCTGTGGCGGAACTGGTaGACGCGCTCGACTCAAAATCGAGTTCCGTAAGGAGTGCTGGTTCGATCCCGGCCAGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig56.trna49 (515996-515920) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (515962-515960) Score: 77.28
HMM Sc=47.85 Sec struct Sc=29.43
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGCTCAGCCGGAtAGAGCGGCGGTTTCCTAAACCGTAGGtCGGATGTTCGAGTCATCCCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna50 (287922-287848) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (287890-287888) Score: 88.17
HMM Sc=69.67 Sec struct Sc=18.50
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGAGGGTTCGAATCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig56.trna51 (166134-166045) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (166100-166098) Score: 78.76
HMM Sc=47.16 Sec struct Sc=31.60
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTtgAATGCACCGCACTCGAAATGCGGCATAGGTGCAAGCCTATCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig56.trna52 (66610-66535) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (66577-66575) Score: 87.23
HMM Sc=69.29 Sec struct Sc=17.94
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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