Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-06-20
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig56	RNAmmer-1.2	rRNA	5528051	5528164	88.7	-	.	5s_rRNA	
 Contig56	RNAmmer-1.2	rRNA	5290069	5290182	88.7	-	.	5s_rRNA	
 Contig56	RNAmmer-1.2	rRNA	5528237	5531051	3323.7	-	.	23s_rRNA	
 Contig56	RNAmmer-1.2	rRNA	5290255	5293070	3310.1	-	.	23s_rRNA	
 Contig56	RNAmmer-1.2	rRNA	5531873	5533349	1934.9	-	.	16s_rRNA	
 Contig56	RNAmmer-1.2	rRNA	5293892	5295368	1934.9	-	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig56_5528051-5528164_DIR- /molecule=5s_rRNA /score=88.7
 TGGTGGTTCTAGCGAGGAGCCTGAACCCGTTCCCATCCCGAACACGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTCCGTCTCAAGACGCGGGAGAGTAGGTCGCCGCCAGGCC
 >rRNA_Contig56_5290069-5290182_DIR- /molecule=5s_rRNA /score=88.7
 TGGTGGTTCTAGCGAGGAGCCTGAACCCGTTCCCATCCCGAACACGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTCCGTCTCAAGACGCGGGAGAGTAGGTCGCCGCCAGGCC
 >rRNA_Contig56_5528237-5531051_DIR- /molecule=23s_rRNA /score=3323.7
 TCAAGTGCCTTAAGGGTGTTCGACGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGC
 TACGCTGCGATAAGCCATGGGGAGCTGCGAAGAAGCTTTGATCCGTGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGGCCTTGCGTTTCGAAAGAGACGTGAGGG
 TTTGGATTTCCGGTTATCAAGAGAAGGTATGAGATCTCTGAATACATAGGAGGTTTCAAG
 CGAACCCAGGGAACTGAAACATCTAAGTACCTGGAGGAAAGGACATCAACCGAGACTCCG
 CTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTCATCATTGGAAGACAATTGGAATCTG
 TCAGGAAAGCAGAGCCTTAGAGGGTGATAGCCCCGTACAAGTAATTCAACCATTGATGCT
 CGAGTAAGGCGGGACACGTGAAATCCTGTCTGAACATGGGGGGACCACCCTCCAAGCCTA
 AGTACTCCTCAGCGACCGATAGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGCACCCCG
 ACGAGGGGAGTGAAATAGTTCCTGAAATCGGACACCTACAAACAGACGGAGCCCAAGATA
 CGTTCTGGGTGACGTCGTACCTTTTGTATTATGGGCCAGCGACTTAATTTAACGAGCAAG
 CTTAAGCCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTG
 GATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGTAACACTCAC
 TGGAGGACCGAACGGGTGCCTGTTGAAAAAGGCTCCGATGACTTGTGGTTAGGGGTGAAA
 GGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAAAGATATTTAGGTATCGCCTCGGA
 CGAATACCTCAGGGGGTAGAGCACTGGATGGGCTAGGGGGACTTACCGTCTTACCAAACC
 CAACCAAACTCCGAATACCTGAGAGTACTATCCGGGAGTCACACGGCGGGTGCTAACGTC
 CGTCGTGGAGAGGGAAACAACCCTGACCTACAGCTAAGGCCCCCAATTCGTGGCTAAGTG
 GGAAAGGATGTGGAAATCCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTA
 AAGAAAGCGTAACAGCTCACTGGTCTAAATAAGGGTTTCTGCGCCGAAGATGTAACGGGG
 CTCAAGCCACGAGCCGAAGCTTAGGGTGTGCGCAAGCACGCGGTAGCGGAGCGTTCTGTA
 AGCCTGCGAAGGGCGACCCGTGAGGGCGCCTGGAGGTATCAGAAGTGCGAATGCTGGCAT
 GAGTAACGACAAACACTGTGAAAGACAGTGTCGCCGAAAGTCCAAGGGTTCCTGCGTAAA
 GTTAATCTTCGCAGGGTTAGCCGGTCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGA
 ATCACGTGAATATTCGTGAGCCAGTGGATGGTGACGAATCCCTTATGTTGTTCGACCTTA
 CTGGATTGGTCGGGCCTCGACGGGGTTCCAGGAAATAGCCTCCACATCAGACCGTACCCG
 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG
 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCTTCTGTTTGCGCAAGCAGG
 CAGGAGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAA
 TCGCAAGATGACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGGAGGAGT
 GCAAGCTCTGAATTGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAG
 CGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGACTTCCCCGCTGT
 CTCCAACATAGACTCAGTGAAATTGAATTCCCCGTGAAGATGCGGGGTTCCTGCGGTCAG
 ACGGAAAGACCCCGTGCACCTTTACTGTAGCTTTGCGCTGGTATTCGTGACTGTTTGTGT
 AGAATAGGTGGTAGGCTTTGAAGCTCGGGCGCCAGCTCGGGTGGAGCCGCAATGTGAAAT
 ACCACCCTAATGGTTATGGATATCTAACCGCGATCCCTTATCGGGTTCCGGGACAGCGCA
 TGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCGACGGTA
 GGCTCAGAACGGTCGGAAATCGTTCGTCGAGTACAATGGCATAAGCCTGCCTGACTGCGA
 GACCAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCGTGGAT
 GGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATAACAGGCTGATGACGCCCAAGAG
 TCCATATCGACGGCGTCGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAG
 AAGGTCCCAAGGGTTCGGCTGTTCGCCGATTAAAGTGGTACGTGAGCTGGGTTCAGAACG
 TCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTTGGAATGTTGAGAGGATTTGCCCC
 TAGTACGAGAGGACCGGGGTGAACGTACCTCTGGTGGAGCTGTTGTCGCGCCAGCGGCAG
 TGCAGCATAGCTATGTACGGACGGGATAACCGCTGAAAGCATCTAAGCGGGAAACCCACC
 TCAAAACGAGCATTCCCTTGAGAACCGTGGAAGACGACCACGTTGATAGGCCGGATGTGG
 AAGTGCAGCAATGCATGTAGCTTACCGGTACTAATCGTTCGATTGGCTTGATTGC
 >rRNA_Contig56_5290255-5293070_DIR- /molecule=23s_rRNA /score=3310.1
 TCAAGTGCCTTAAGGGTGTTCGACGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGC
 TACGCTGCGATAAGCCATGGGGAGCTGCGAAGAAGCTTTGATCCGTGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGGCCTTGCGTTTCGAAAGAGACGTGAGGG
 TTTGGATTTCCGGTTATCAAGAGAAGGTATGAGATCTCTGAATACATAGGAGGTTTCAAG
 CGAACCCAGGGAACTGAAACATCTAAGTACCTGGAGGAAAGGACATCAACCGAGACTCCG
 CTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTCATCATTGGAAGACAATTGGAATCTG
 TCAGGAAAGCAGAGCCTTAGAGGGTGATAGCCCCGTACAAGTAATTCAACCATTGATGCT
 CGAGTAAGGCGGGACACGTGAAATCCTGTCTGAACATGGGGGGACCACCCTCCAAGCCTA
 AGTACTCCTCAGCGACCGATAGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGCACCCCG
 ACGAGGGGAGTGAAATAGTTCCTGAAATCGGACACCTACAAACAGACGGAGCCCAAGATA
 CGTTCTGGGTGACGTCGTACCTTTTGTATTATGGGCCAGCGACTTAATTTAACGAGCAAG
 CTTAAGCCGGTAGGTGTAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTG
 GATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGTAACACTCAC
 TGGAGGACCGAACGGGTGCCTGTTGAAAAAGGCTCCGATGACTTGTGGTTAGGGGTGAAA
 GGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAAAGATATTTAGGTATCGCCTCGGA
 CGAATACCTCAGGGGGTAGAGCACTGGATGGGCTAGGGGGACTTACCGTCTTACCAAACC
 CAACCAAACTCCGAATACCTGAGAGTACTATCCGGGAGTCACACGGCGGGTGCTAACGTC
 CGTCGTGGAGAGGGAAACAACCCTGACCTACAGCTAAGGCCCCCAATTCGTGGCTAAGTG
 GGAAAGGATGTGGAAATCCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTA
 AAGAAAGCGTAACAGCTCACTGGTCTAAATAAGGGTTTCTGCGCCGAAGATGTAACGGGG
 CTCAAGCCACGAGCCGAAGCTTAGGGTGTGCGCAAGCACGCGGTAGCGGAGCGTTCTGTA
 AGCCTGCGAAGGGCGACCCGTGAGGGCGCCTGGAGGTATCAGAAGTGCGAATGCTGGCAT
 GAGTAACGACAAACACTGTGAAAGACAGTGTCGCCGAAAGTCCAAGGGTTCCTGCGTAAA
 GTTAATCTTCGCAGGGTTAGCCGGTCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGA
 ATCACGTGAATATTCGTGAGCCAGTGGATGGTGACGAATCCCTTATGTTGTTCGACCTTA
 CTGGATTGGTCGGGCCTCGACGGGGTTCCAGGAAATAGCCTCCACATCAGACCGTACCCG
 AAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGG
 AACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCTTCTGTTTGCGCAAGCAGG
 CAGGAGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAA
 TCGCAAGATGACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGGAGGAGT
 GCAAGCTCTGAATTGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAG
 CGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGACTTCCCCGCTGT
 CTCCAACATAGACTCAGTGAAATTGAATTCCCCGTGAAGATGCGGGGTTCCTGCGGTCAG
 ACGGAAAGACCCCGTGCACCTTTACTGTAGCTTTGCGCTGGTATTCGTGACTGTTTGTGT
 AGAATAGGTGGTAGGCTTTGAAGCTCGGGCGCCAGCTCGGGTGGAGCCGCAATGTGAAAT
 ACCACCCTAATGGTTATGGATATCTAACCGCGATCCCTTATCGGGTTCCGGGACAGCGCA
 TGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCGACGGTA
 GGCTCAGAACGGTCGGAAATCGTTCGTCGAGTACAATGGCATAAGCCTGCCTGACTGCGA
 GACCAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCCGGTGGTCCCGCGTGGA
 TGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATAACAGGCTGATGACGCCCAAGA
 GTCCATATCGACGGCGTCGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGA
 GAAGGTCCCAAGGGTTCGGCTGTTCGCCGATTAAAGTGGTACGTGAGCTGGGTTCAGAAC
 GTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTTGGAATGTTGAGAGGATTTGCCC
 CTAGTACGAGAGGACCGGGGTGAACGTACCTCTGGTGGAGCTGTTGTCGCGCCAGCGGCA
 GTGCAGCATAGCTATGTACGGACGGGATAACCGCTGAAAGCATCTAAGCGGGAAACCCAC
 CTCAAAACGAGCATTCCCTTGAGAACCGTGGAAGACGACCACGTTGATAGGCCGGATGTG
 GAAGTGCAGCAATGCATGTAGCTTACCGGTACTAATCGTTCGATTGGCTTGATTGC
 >rRNA_Contig56_5531873-5533349_DIR- /molecule=16s_rRNA /score=1934.9
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCGTAGCAATACGTCAGTGGCAGACGGGTGAGTAACGCGTGGGAACGTACCTTTTGGT
 TCGGAACAACACAGGGAAACTTGTGCTAATACCGGATAAGCCCTTACGGGGAAAGATTTA
 TCGCCGAAAGATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTTTCTAAGTCAGA
 GGTGAAAGCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGGAAGTCTTGAGTATGGC
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGGCCATTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCCAGGACCGGTCGCAGAGACGCGA
 CCTTCTCTTCGGAGCCTGGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCCTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGAAGCTA
 AGGGGCGACCCTTCGCAAATCTCAAAAAGCCGTCTCAGTTCGGATTGGGCTCTGCAACTC
 GAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGCTTTACCTGAAGACGGTGC
 GCTAACCAGCAATGGGGGCAGCCGGCCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT
 >rRNA_Contig56_5293892-5295368_DIR- /molecule=16s_rRNA /score=1934.9
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCGTAGCAATACGTCAGTGGCAGACGGGTGAGTAACGCGTGGGAACGTACCTTTTGGT
 TCGGAACAACACAGGGAAACTTGTGCTAATACCGGATAAGCCCTTACGGGGAAAGATTTA
 TCGCCGAAAGATCGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTTTCTAAGTCAGA
 GGTGAAAGCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGGAAGTCTTGAGTATGGC
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGGCCATTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCCAGGACCGGTCGCAGAGACGCGA
 CCTTCTCTTCGGAGCCTGGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCCTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGAAGCTA
 AGGGGCGACCCTTCGCAAATCTCAAAAAGCCGTCTCAGTTCGGATTGGGCTCTGCAACTC
 GAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGCTTTACCTGAAGACGGTGC
 GCTAACCAGCAATGGGGGCAGCCGGCCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT