| Kingdom |
Category |
Genus/Species |
Count |
|
|
|
27 |
| Archaea |
|
|
14 |
| |
|
|
27 |
| |
Crenarchaeota |
|
1 |
| |
|
Thermofilum pendens (tpe) |
1 |
| |
Euryarchaeota |
|
13 |
| |
|
Archaeoglobus fulgidus (afu) |
1 |
| |
|
Methanosarcina acetivorans (mac) |
4 |
| |
|
Candidatus Methanoregula boonei (mbn) |
1 |
| |
|
Methanoculleus marisnigri (mem) |
1 |
| |
|
Methanopyrus kandleri (mka) |
1 |
| |
|
Methanosarcina mazei (mma) |
2 |
| |
|
Natronomonas pharaonis (nph) |
1 |
| |
|
Uncultured methanogenic archaeon RC-I (rci) |
1 |
| |
|
Thermoplasma acidophilum (tac) |
1 |
| Bacteria |
|
|
4911 |
| |
Acidobacteria |
|
12 |
| |
|
Acidobacteria bacterium (aba) |
4 |
| |
|
Solibacter usitatus (sus) |
8 |
| |
Actinobacteria |
|
42 |
| |
|
Acidothermus cellulolyticus (ace) |
1 |
| |
|
Arthrobacter sp. FB24 (art) |
1 |
| |
|
Corynebacterium diphtheriae (cdi) |
1 |
| |
|
Clavibacter michiganensis (cmi) |
1 |
| |
|
Frankia alni (fal) |
2 |
| |
|
Frankia sp. EAN1pec (fre) |
3 |
| |
|
Mycobacterium abscessus ATCC 19977T (mab) |
1 |
| |
|
Mycobacterium sp. JLS (mjl) |
2 |
| |
|
Mycobacterium smegmatis (msm) |
3 |
| |
|
Mycobacterium tuberculosis H37Rv (mtu) |
1 |
| |
|
Mycobacterium ulcerans (mul) |
1 |
| |
|
Nocardioides sp. JS614 (nca) |
6 |
| |
|
Nocardia farcinica (nfa) |
2 |
| |
|
Rhodococcus sp. RHA1 (rha) |
3 |
| |
|
Rubrobacter xylanophilus (rxy) |
2 |
| |
|
Salinispora arenicola (saq) |
1 |
| |
|
Streptomyces coelicolor (sco) |
3 |
| |
|
Saccharopolyspora erythraea (sen) |
4 |
| |
|
Streptomyces avermitilis (sma) |
2 |
| |
|
Salinispora tropica (stp) |
1 |
| |
|
Thermobifida fusca (tfu) |
1 |
| |
Bacteroides |
|
6 |
| |
|
Cytophaga hutchinsonii (chu) |
1 |
| |
|
Flavobacterium johnsoniae (fjo) |
3 |
| |
|
Flavobacterium psychrophilum (fps) |
2 |
| |
Cyanobacteria |
|
22 |
| |
|
Acaryochloris marina (amr) |
2 |
| |
|
Anabaena sp. PCC7120 (ana) |
3 |
| |
|
Anabaena variabilis (ava) |
4 |
| |
|
Cyanobacteria Yellowstone A-Prime (cya) |
1 |
| |
|
Cyanobacteria Yellowstone B-Prime (cyb) |
1 |
| |
|
Gloeobacter violaceus (gvi) |
3 |
| |
|
Microcystis aeruginosa (mar) |
4 |
| |
|
Prochlorococcus marinus MIT9313 (pmt) |
1 |
| |
|
Synechococcus sp. CC9605 (syd) |
1 |
| |
|
Synechocystis sp. PCC6803 (syn) |
1 |
| |
|
Synechococcus sp. PCC7002 (syp) |
1 |
| |
Deinococcus-Thermus |
|
4 |
| |
|
Deinococcus geothermalis (dge) |
2 |
| |
|
Thermus thermophilus HB27 (tth) |
1 |
| |
|
Thermus thermophilus HB8 (ttj) |
1 |
| |
Firmicutes |
|
18 |
| |
|
Alkaliphilus metalliredigens (amt) |
1 |
| |
|
Bacillus amyloliquefaciens (bay) |
2 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
1 |
| |
|
Clostridium beijerinckii (cbe) |
1 |
| |
|
Clostridium difficile (cdf) |
1 |
| |
|
Carboxydothermus hydrogenoformans (chy) |
1 |
| |
|
Clostridium kluyveri (ckl) |
1 |
| |
|
Clostridium thermocellum (cth) |
1 |
| |
|
Candidatus Desulforudis audaxviator (dau) |
1 |
| |
|
Geobacillus thermodenitrificans (gtn) |
1 |
| |
|
Lactobacillus helveticus (lhe) |
1 |
| |
|
Lysinibacillus sphaericus (lsp) |
1 |
| |
|
Pelotomaculum thermopropionicum (pth) |
1 |
| |
|
Staphylococcus aureus JH1 (sah) |
1 |
| |
|
Streptococcus pyogenes MGAS6180 (serotype M28) (spb) |
1 |
| |
|
Symbiobacterium thermophilum (sth) |
2 |
| |
Green nonsulfur bacteria |
|
8 |
| |
|
Chloroflexus aurantiacus (cau) |
1 |
| |
|
Herpetosiphon aurantiacus (hau) |
1 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
4 |
| |
|
Roseiflexus sp. RS-1 (rrs) |
2 |
| |
Green sulfur bacteria |
|
6 |
| |
|
Chlorobium chlorochromatii (cch) |
2 |
| |
|
Chlorobium phaeobacteroides (cph) |
2 |
| |
|
Chlorobaculum tepidum (cte) |
1 |
| |
|
Pelodictyon luteolum (plt) |
1 |
| |
Hyperthermophilic bacteria |
|
1 |
| |
|
Thermotoga lettingae (tle) |
1 |
| |
Planctomyces |
|
3 |
| |
|
Rhodopirellula baltica (rba) |
3 |
| |
Proteobacteria |
|
4787 |
| |
|
Acidovorax avenae (aav) |
3 |
| |
|
Alcanivorax borkumensis (abo) |
1 |
| |
|
Acinetobacter baumannii AYE (aby) |
1 |
| |
|
Acidiphilium cryptum JF-5 (acr) |
4 |
| |
|
Anaeromyxobacter dehalogenans (ade) |
7 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
3 |
| |
|
Anaeromyxobacter sp. Fw109-5 (afw) |
2 |
| |
|
Aeromonas hydrophila (aha) |
1 |
| |
|
Acidovorax sp. JS42 (ajs) |
2 |
| |
|
Agrobacterium tumefaciens C58 (Cereon) (atc) |
19 |
| |
|
Agrobacterium tumefaciens C58 (UWash/Dupont) (atu) |
1 |
| |
|
Azorhizobium caulinodans (azc) |
119 |
| |
|
Azoarcus sp. BH72 (azo) |
14 |
| |
|
Burkholderia cepacia (bam) |
3 |
| |
|
Bordetella bronchiseptica (bbr) |
6 |
| |
|
Bradyrhizobium sp. BTAi1 (bbt) |
782 |
| |
|
Burkholderia cenocepacia MC0-3 (bcm) |
4 |
| |
|
Brucella canis (bcs) |
9 |
| |
|
Bartonella henselae (bhe) |
1 |
| |
|
Bradyrhizobium japonicum (bja) |
1225 |
| |
|
Brucella melitensis biovar Abortus (bmf) |
1 |
| |
|
Brucella suis ATCC 23445 (bmt) |
1 |
| |
|
Burkholderia multivorans (bmu) |
1 |
| |
|
Burkholderia mallei SAVP1 (bmv) |
1 |
| |
|
Brucella ovis (bov) |
2 |
| |
|
Bordetella parapertussis (bpa) |
1 |
| |
|
Burkholderia pseudomallei 668 (bpd) |
1 |
| |
|
Bordetella pertussis (bpe) |
1 |
| |
|
Burkholderia pseudomallei 1710b (bpm) |
1 |
| |
|
Burkholderia pseudomallei K96243 (bps) |
1 |
| |
|
Bordetella petrii (bpt) |
5 |
| |
|
Bradyrhizobium sp. ORS278 (bra) |
575 |
| |
|
Burkholderia thailandensis (bte) |
5 |
| |
|
Bartonella tribocorum (btr) |
8 |
| |
|
Burkholderia sp. 383 (bur) |
9 |
| |
|
Burkholderia vietnamiensis (bvi) |
5 |
| |
|
Burkholderia xenovorans (bxe) |
13 |
| |
|
Caulobacter sp. K31 (cak) |
21 |
| |
|
Coxiella burnetii Dugway 5J108-111 (cbd) |
5 |
| |
|
Coxiella burnetii RSA 493 (cbu) |
1 |
| |
|
Caulobacter crescentus (ccr) |
8 |
| |
|
Campylobacter fetus (cff) |
1 |
| |
|
Chromohalobacter salexigens (csa) |
3 |
| |
|
Chromobacterium violaceum (cvi) |
5 |
| |
|
Delftia acidovorans (dac) |
9 |
| |
|
Dechloromonas aromatica (dar) |
9 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
3 |
| |
|
Dinoroseobacter shibae (dsh) |
4 |
| |
|
Desulfovibrio vulgaris DP4 (dvl) |
3 |
| |
|
Desulfovibrio vulgaris Hildenborough (dvu) |
1 |
| |
|
Azoarcus sp. EbN1 (eba) |
12 |
| |
|
Erwinia carotovora (eca) |
3 |
| |
|
Escherichia coli UTI89 (UPEC) (eci) |
1 |
| |
|
Escherichia coli 536 (UPEC) (ecp) |
1 |
| |
|
Escherichia coli O157 Sakai (EHEC) (ecs) |
2 |
| |
|
Escherichia coli E24377A (ecw) |
1 |
| |
|
Francisella philomiragia (fph) |
1 |
| |
|
Granulobacter bethesdensis (gbe) |
10 |
| |
|
Gluconacetobacter diazotrophicus (gdi) |
7 |
| |
|
Geobacter metallireducens (gme) |
2 |
| |
|
Gluconobacter oxydans (gox) |
9 |
| |
|
Geobacter sulfurreducens (gsu) |
7 |
| |
|
Geobacter uraniumreducens (gur) |
5 |
| |
|
Herminiimonas arsenicoxydans (har) |
3 |
| |
|
Hahella chejuensis (hch) |
2 |
| |
|
Haemophilus ducreyi (hdu) |
1 |
| |
|
Halorhodospira halophila (hha) |
15 |
| |
|
Hyphomonas neptunium (hne) |
4 |
| |
|
Jannaschia sp. CCS1 (jan) |
8 |
| |
|
Legionella pneumophila Paris (lpp) |
1 |
| |
|
Magnetospirillum magneticum (mag) |
32 |
| |
|
Marinobacter aquaeolei (maq) |
4 |
| |
|
Methylococcus capsulatus (mca) |
9 |
| |
|
Mesorhizobium sp. BNC1 (mes) |
13 |
| |
|
Methylobacterium extorquens (mex) |
40 |
| |
|
Magnetococcus sp. MC-1 (mgm) |
3 |
| |
|
Mesorhizobium loti (mlo) |
34 |
| |
|
Maricaulis maris (mmr) |
2 |
| |
|
Minibacterium massiliensis (mms) |
8 |
| |
|
Marinomonas sp. MWYL1 (mmw) |
1 |
| |
|
Methylibium petroleiphilum (mpt) |
7 |
| |
|
Methylobacterium radiotolerans (mrd) |
63 |
| |
|
Myxococcus xanthus (mxa) |
6 |
| |
|
Novosphingobium aromaticivorans (nar) |
6 |
| |
|
Nitrosomonas eutropha (net) |
2 |
| |
|
Nitrosomonas europaea (neu) |
1 |
| |
|
Neisseria gonorrhoeae (ngo) |
1 |
| |
|
Nitrobacter hamburgensis (nha) |
727 |
| |
|
Nitratiruptor sp. SB155-2 (nis) |
1 |
| |
|
Nitrosospira multiformis (nmu) |
4 |
| |
|
Nitrosococcus oceani (noc) |
2 |
| |
|
Nitrobacter winogradskyi (nwi) |
218 |
| |
|
Ochrobactrum anthropi (oan) |
21 |
| |
|
Pseudomonas aeruginosa PAO1 (pae) |
1 |
| |
|
Pseudomonas aeruginosa PA7 (pap) |
5 |
| |
|
Pseudoalteromonas atlantica (pat) |
1 |
| |
|
Pseudomonas aeruginosa UCBPP-PA14 (pau) |
7 |
| |
|
Paracoccus denitrificans (pde) |
21 |
| |
|
Pseudomonas entomophila (pen) |
4 |
| |
|
Pseudomonas fluorescens Pf-5 (pfl) |
6 |
| |
|
Pseudomonas fluorescens PfO-1 (pfo) |
4 |
| |
|
Psychromonas ingrahamii (pin) |
1 |
| |
|
Parvibaculum lavamentivorans (pla) |
25 |
| |
|
Photorhabdus luminescens (plu) |
1 |
| |
|
Pseudomonas mendocina (pmy) |
3 |
| |
|
Polaromonas naphthalenivorans (pna) |
15 |
| |
|
Polynucleobacter sp. QLW-P1DMWA-1 (pnu) |
6 |
| |
|
Polaromonas sp. JS666 (pol) |
8 |
| |
|
Pelobacter propionicus (ppd) |
3 |
| |
|
Pseudomonas putida F1 (ppf) |
2 |
| |
|
Pseudomonas putida GB-1 (ppg) |
2 |
| |
|
Pseudomonas putida KT2440 (ppu) |
2 |
| |
|
Pseudomonas putida W619 (ppw) |
2 |
| |
|
Pseudomonas stutzeri (psa) |
2 |
| |
|
Pseudomonas syringae pv. syringae B728a (psb) |
6 |
| |
|
Pseudomonas syringae pv. phaseolicola 1448A (psp) |
2 |
| |
|
Pseudomonas syringae pv. tomato DC3000 (pst) |
2 |
| |
|
Candidatus Pelagibacter ubique (pub) |
1 |
| |
|
Rickettsia conorii (rco) |
1 |
| |
|
Roseobacter denitrificans (rde) |
2 |
| |
|
Ralstonia eutropha H16 (reh) |
9 |
| |
|
Rhizobium etli (ret) |
14 |
| |
|
Ralstonia eutropha JMP134 (reu) |
5 |
| |
|
Rhodoferax ferrireducens (rfr) |
9 |
| |
|
Rhizobium leguminosarum (rle) |
33 |
| |
|
Ralstonia metallidurans (rme) |
12 |
| |
|
Rhodospirillum rubrum (rru) |
70 |
| |
|
Rhodobacter sphaeroides ATCC 17029 (rsh) |
12 |
| |
|
Ralstonia solanacearum (rso) |
9 |
| |
|
Rhodobacter sphaeroides 2.4.1 (rsp) |
10 |
| |
|
Rhodobacter sphaeroides ATCC 17025 (rsq) |
35 |
| |
|
Rickettsia typhi (rty) |
1 |
| |
|
Sphingopyxis alaskensis (sal) |
2 |
| |
|
Syntrophus aciditrophicus (sat) |
1 |
| |
|
Shewanella baltica OS195 (sbn) |
2 |
| |
|
Sorangium cellulosum (scl) |
8 |
| |
|
Saccharophagus degradans (sde) |
2 |
| |
|
Shewanella frigidimarina (sfr) |
1 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
3 |
| |
|
Sodalis glossinidius (sgl) |
1 |
| |
|
Shewanella sp. MR-7 (shm) |
1 |
| |
|
Shewanella sp. W3-18-1 (shw) |
3 |
| |
|
Silicibacter pomeroyi (sil) |
10 |
| |
|
Silicibacter sp. TM1040 (sit) |
7 |
| |
|
Sinorhizobium medicae (smd) |
10 |
| |
|
Sinorhizobium meliloti (sme) |
15 |
| |
|
Shewanella oneidensis (son) |
1 |
| |
|
Shewanella putrefaciens (spc) |
1 |
| |
|
Serratia proteamaculans (spe) |
2 |
| |
|
Salmonella enterica serovar Paratyphi B (spq) |
2 |
| |
|
Sulfurovum sp. NBC37-1 (sun) |
1 |
| |
|
Shewanella woodyi ATCC51908 (swd) |
2 |
| |
|
Sphingomonas wittichii (swi) |
9 |
| |
|
Thiobacillus denitrificans (tbd) |
3 |
| |
|
Thiomicrospira crunogena (tcx) |
1 |
| |
|
Verminephrobacter eiseniae (vei) |
11 |
| |
|
Vibrio harveyi (vha) |
1 |
| |
|
Vibrio vulnificus YJ016 (vvy) |
1 |
| |
|
Wolinella succinogenes (wsu) |
1 |
| |
|
Xanthomonas axonopodis (xac) |
2 |
| |
|
Xanthobacter autotrophicus (xau) |
106 |
| |
|
Xanthomonas campestris pv. campestris 8004 (xcb) |
3 |
| |
|
Xanthomonas campestris pv. campestris ATCC 33913 (xcc) |
1 |
| |
|
Xanthomonas campestris pv. vesicatoria (xcv) |
4 |
| |
|
Xylella fastidiosa M12 (xfm) |
1 |
| |
|
Xanthomonas oryzae MAFF311018 (xom) |
1 |
| |
|
Yersinia enterocolitica (yen) |
1 |
| |
|
Zymomonas mobilis (zmo) |
1 |
| |
Spirochete |
|
1 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
1 |
| |
Synergistetes |
|
1 |
| |
|
Syntrophomonas wolfei (swo) |
1 |
| Eukaryotes |
|
|
23 |
| |
Animals |
|
7 |
| |
|
Caenorhabditis elegans (nematode) (cel) |
1 |
| |
|
Drosophila melanogaster (fruit fly) (dme) |
1 |
| |
|
Danio rerio (zebrafish) (dre) |
2 |
| |
|
Nematostella vectensis (sea anemone) (nve) |
2 |
| |
|
Xenopus laevis (African clawed frog) (xla) |
1 |
| |
Fungi |
|
7 |
| |
|
Aspergillus fumigatus (afm) |
1 |
| |
|
Aspergillus niger (ang) |
2 |
| |
|
Aspergillus nidulans (ani) |
1 |
| |
|
Magnaporthe grisea (mgr) |
1 |
| |
|
Neurospora crassa (ncr) |
1 |
| |
|
Yarrowia lipolytica (yli) |
1 |
| |
Plants |
|
3 |
| |
|
Ostreococcus lucimarinus (olu) |
2 |
| |
|
Oryza sativa japonica (Japanese rice) (osa) |
1 |
| |
Protists |
|
6 |
| |
|
Cryptosporidium parvum (cpv) |
1 |
| |
|
Dictyostelium discoideum (ddi) |
1 |
| |
|
Leishmania major (lma) |
2 |
| |
|
Trypanosoma cruzi (tcr) |
2 |
| NULL |
|
|
275 |
| TOTAL |
|
|
5250 |
![[space]](http://compbio.ornl.gov/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}