ID Contig56 SV 1; circular; unassigned DNA; STD; UNC; 5744041 BP. XX DE Contig56.STD XX AC unknown DE Rhodopseudomonas palustris TIE-1 KW complete genome XX FH Key Location/Qualifieers FT source 1..5744041 FT /organism="Rhodopseudomonas palustris TIE-1" FT /mol_type="chromosome DNA" FT /mol_topo="circular" FT CDS 220..1638 FT /locus_tag="Rpal_0001" FT /product="chromosomal replication initiator protein DnaA" FT /note="TIGRFAM: chromosomal replication initiator protein FT DnaA" FT /note="PFAM: Chromosomal replication initiator DnaA FT domain; Chromosomal replication initiator DnaA" FT /note="SMART: AAA ATPase" FT /note="SPTR: A5E812 Chromosomal replication initiator FT protein dnaA. Bradyrhizobium sp. (strain BTAi1 / ATCC FT BAA-1182)." FT /note="KEGG: bbt:BBta_0001 chromosomal replication FT initiation protein " FT /note="COGs: COG0593 ATPase involved in DNA replication FT initiation category=L" FT /note="InterPro IPR001957:IPR003593:IPR013159:IPR013317" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MSNMEQDRWSRVKGRLRSSVGEDVYSSWFARMDLESVHDESVHLSVPTRFLKSWIQTHYSDKVLSCWQAELPEVNRVDLT FT VRSPVRCAAPAKEAPAPVESRRDEQRPSAERSNGATPVSANHDALGGSPLDPRLTFASFVVGRSNTLAHAAAKQVAEGRR FT GDPVMFNPLYIHSGVGLGKTHLLQAVTWAGNAGTERKVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFL FT QGKTTQAEFCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEDLRLGILRSRVVAARTHHASFD FT VPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPVTLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLL FT SSRRTANVVRPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTTLSDEVESLKRQLQE* FT " FT gene 220..1638 FT /locus_tag="Rpal_0001" FT /colour=2 FT CDS 1872..2990 FT /locus_tag="Rpal_0002" FT /product="DNA polymerase III, beta subunit" FT /EC_number="2.7.7.7" FT /note="TIGRFAM: DNA polymerase III, beta subunit" FT /note="PRIAM: DNA-directed DNA polymerase" FT /note="PFAM: DNA polymerase III beta chain" FT /note="SPTR: DNA polymerase III, beta subunit - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0002 DNA polymerase III subunit beta FT " FT /note="COGs: COG0592 DNA polymerase sliding clamp subunit FT (PCNA homolog) category=L" FT /note="InterPro IPR001001" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAETATAGSTTVPAHMFYDIVRK FT LPDGSQIVLESDGDRSVLAIRAGRSRFTLQTLPESDFPDLAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIY FT LHTAGSPKASSLRAVATDGHRLAQLDLTLPSGADGMPGLIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLTS FT KLIDGTFPDYGRVIPQNNDKELRVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSVTNPDSGSATEELEVEYASDP FT LDIGFNSRYLLDIAAQIEGEVAVLKLADPGSPTLIQDRDSKSALYVLMPMRV* " FT gene 1872..2990 FT /locus_tag="Rpal_0002" FT /colour=2 FT CDS 3234..4373 FT /locus_tag="Rpal_0003" FT /product="DNA replication and repair protein RecF" FT /note="TIGRFAM: DNA replication and repair protein RecF" FT /note="PFAM: SMC domain protein" FT /note="SPTR: DNA replication and repair protein recF - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0003 recombination protein F " FT /note="COGs: COG1195 Recombinational DNA repair ATPase FT (RecF pathway) category=L" FT /note="InterPro IPR001238:IPR003395" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MTAARITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVANHEGDGSWAVSAEVEG FT ALGLATLGTGIEPPRGDTPTTRRCRIDREPVGSAAAFGDHLRMVWLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARV FT SALDRSLRSRNRLLEDIRNADSHWLDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTS FT EPATAVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVLAHAQLVAETTSITPLL FT LLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPAAGIFDVESGRIRPRG* FT " FT gene 3234..4373 FT /locus_tag="Rpal_0003" FT /colour=2 FT CDS 4590..7031 FT /locus_tag="Rpal_0004" FT /product="DNA gyrase, B subunit" FT /EC_number="5.99.1.3" FT /note="TIGRFAM: DNA gyrase, B subunit" FT /note="PRIAM: DNA topoisomerase (ATP-hydrolyzing)" FT /note="PFAM: DNA gyrase subunit B domain protein; FT ATP-binding region ATPase domain protein; TOPRIM domain FT protein; DNA topoisomerase type IIA subunit B region 2 FT domain protein" FT /note="SMART: DNA topoisomerase II" FT /note="SPTR: DNA gyrase, B subunit - Nitrobacter sp. FT Nb-311A" FT /note="KEGG: nha:Nham_0004 DNA gyrase subunit B " FT /note="COGs: COG0187 Type IIA topoisomerase (DNA FT gyrase/topo II topoisomerase IV) B subunit category=L" FT /note="InterPro FT IPR000565:IPR001241:IPR002288:IPR003594:IPR006171:IPR011557:IPR011558:IPR013506" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MTEPARQPSAESVHPAPAEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHASRVEVILNA FT DGSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLLLRVWRNDKEHYIEF FT AHGDAVAPLKVVGDANGKRGTEVTFYASAETFTHIEYDFATLEHRLRELAFLNSGVYIVLSDMRHAVEKREEMRYEGGVT FT EFVKYLDRNKKPIVPTPVVIGAELNGIMVEAALWWNDTYHENVLCFTNNIPQRDGGTHLAGFRAALTRQITGYAEAGSKK FT EKVALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAWLEEHPSEAKIVIGKVVEAAAAREAA FT RKARELTRRKGALDIASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSE FT QIGTLITALGTGIGREDFDLSKLRYHKIILMTDADVDGAHIRTLLLTFFFRQMPALIEGGYLYIAQPPLYKVTRGKSEQY FT LKDERALEDYLIATGLDDCAFKLANGEVRGGRDLLALVEDARAIRSTLHNLHSRYNRSVVEQAAIAGVLSPRITTDIATA FT NEAAAYIARRLDALADEVERGWVGHFTEGEGFRFERTVRGVKEVAAIDDALLGSADARKLDEYAAVLQEVYPRPGVLRRK FT EAETAIHGPISLFEAVTDAGRKGVALQRYKGLGEMNPSQLWETTLDTNARSLLQVKVREVDEADDIFTKLMGDVVEPRRE FT FIQENSLHATVDV* " FT gene 4590..7031 FT /locus_tag="Rpal_0004" FT /colour=2 FT CDS complement(7213..8331) FT /locus_tag="Rpal_0005" FT /product="4-hydroxyphenylpyruvate dioxygenase" FT /EC_number="1.13.11.27" FT /note="TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase" FT /note="PRIAM: 4-hydroxyphenylpyruvate dioxygenase" FT /note="PFAM: Glyoxalase/bleomycin resistance FT protein/dioxygenase" FT /note="SPTR: 4-hydroxyphenylpyruvate dioxygenase - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0339 4-hydroxyphenylpyruvate FT dioxygenase " FT /note="COGs: COG3185 4-hydroxyphenylpyruvate dioxygenase FT and related hemolysins category=E" FT /note="InterPro IPR004360:IPR005956" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MGPFPHDAQPATISADNPMGTDGFEFVEFAHPDPAQLHSLFKLMGFSLVAKHRTKAISVYRQGDVNYLVNEQPGTHGTDF FT VTAHGPCAPSMAFRVVDAKQAYERAISLGAEPAGVTAAEATLDVPAIKGIGGSLLYFVDRYGAKGSAYDAEFDWVGARDV FT RPAGAGLYYIDHLTHNVHRGRMDVWTGFYAKLFNFRQIRFFDIEGRASGLFSRALTSPDGKIRIPINEDAGDSGQIEEYL FT SLYRGEGIQHIACGCRDIYSTVEGLRAAGLPFMPSPPETYFERVDARLPEHGEDVARLQRNGILIDGEGVVDGGQTKVLL FT QIFSANAIGPIFFEFIQRKGDDGFGEGNFKALFESIEEDQIRRGVLKAERAA* " FT gene complement(7213..8331) FT /locus_tag="Rpal_0005" FT /colour=10 FT CDS 8457..8936 FT /locus_tag="Rpal_0006" FT /product="transcriptional regulator, AsnC family" FT /note="PFAM: regulatory protein AsnC/Lrp family" FT /note="SPTR: Transcriptional regulatory protein - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0340 transcriptional regulatory FT protein " FT /note="COGs: COG1522 Transcriptional regulators FT category=K" FT /note="InterPro IPR000485" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MMSVDAFDLKILSALQDDGRLTNQELADRVQLSPSQCSRRRMRLEQDNIITGYRAELSGDALGFGVVAFIQITLATHSPD FT NAEKFRSLIGRIDEVQEAYSLTGDADYVLKAVLRDLKGLSELVNNVLMPHQSVAHVRSSIVLDRLKESTRLPLKQPANG* FT " FT gene 8457..8936 FT /locus_tag="Rpal_0006" FT /colour=6 FT CDS complement(8982..10430) FT /locus_tag="Rpal_0007" FT /product="signal transduction histidine kinase" FT /note="TIGRFAM: PAS sensor protein" FT /note="PFAM: HWE histidine kinase; PAS fold-4 domain FT protein; PAS fold domain protein" FT /note="SMART: PAS domain containing protein" FT /note="SPTR: Signal transduction histidine kinase - FT Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)" FT /note="KEGG: rru:Rru_A2544 signal transduction histidine FT kinase " FT /note="COGs: COG3920 Signal transduction histidine kinase FT category=T" FT /note="InterPro IPR000014:IPR011102:IPR013656:IPR013767" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MSAVSALSRAELEARLEEAEETLRAIRDGEIDAVVVRAADEEQVFTLEGGGQSYRTFMETMDVGAAAFDQDGQLLYANQA FT LCALLDCAHGSLTASALIALLDPANQAAFRRLLAQAQRERQSAEIHLRVGDAERSMLLTGTPLEFGIVHGAAITFTDISE FT REQAAAARESERLARAILASANEAVIVCDRAGRVTHLNGAAMRICAEAPVGKTFAEAIALSFPEASELMSSDDIVTMATA FT GLPVQGLEAAVRIPSAAITDVMISAAPLVVSGERTQGCVVTLVDLSQRKAAERHQALLMGELDHRVKNTLTMVMAICART FT AAHERTIEDFQKSFTGRIQALAATHTLLSNASWQNLHIRDVLAAELAPFASLSSGRIVTDGLDIAVDAKTAVSLGLVFHE FT LTTNAVKYGALSVPSGRISVRRVGATDEALTIEWQEHDGPPVTPPQSSGFGQTLISRSLGNGGAKLEFDPAGVVCQISIP FT RS* " FT gene complement(8982..10430) FT /locus_tag="Rpal_0007" FT /colour=15 FT CDS complement(10430..10714) FT /locus_tag="Rpal_0008" FT /product="KaiB domain protein" FT /note="PFAM: KaiB domain protein" FT /note="SPTR: KaiB - Rhodospirillum rubrum (strain ATCC FT 11170 / NCIB 8255)" FT /note="KEGG: rru:Rru_A2543 KaiB " FT /note="InterPro IPR011649" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MADPIKLVLYVAGETPKSLAAIRNLEKICAEHLAGKYKVEVIDLKKSPQLAREHGIVAIPTLVKELPVPIRKIIGDLSDTPKVLVHLAVEESSS*" FT gene complement(10430..10714) FT /locus_tag="Rpal_0008" FT /colour=11 FT CDS complement(10724..12415) FT /locus_tag="Rpal_0009" FT /product="putative circadian clock protein, KaiC" FT /EC_number="2.7.11.1" FT /note="PRIAM: Non-specific serine/threonine protein FT kinase" FT /note="PFAM: Circadian clock protein KaiC central region; FT KaiA binding" FT /note="SMART: AAA ATPase" FT /note="SPTR: Circadian clock protein KaiC - Rhodobacter FT sphaeroides (strain ATCC 17025 / ATH 2.4.3)" FT /note="KEGG: rsq:Rsph17025_3311 KaiB domain protein " FT /note="COGs: COG0467 RecA-superfamily ATPase implicated in FT signal transduction category=T" FT /note="InterPro FT IPR001553:IPR003593:IPR004504:IPR010624:IPR014774:IPR015140" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MADGISKSLTGIEGFDDLTLGGLPSGRPSLVCGSAGCGKTLFASTFLINGARLYDEPGVFVTFEERPVDIVDNVASLGFD FT LQGLIAQERVLIEHIAIDPTEVAEVGDYDLEALFLRLEFAVDQIGAKRIVLDTIESLFSAFQNPAVLRAEIRRLFDWLKQ FT KGLTAVITGERGDGTLTRQGLEEYVSDCVILLDHRVDNQISTRRLRIVKYRGTAHGTNEYPFLIDEEGFSVLPVSSLGLS FT HKVHEERISSGVPDLDAMLSGGGFYRGTSVLITGVAGSGKSSLACMMVDAACRRGEKALYLSFEESEAQTVRNMKSVGTD FT LGRWLSTGQLRYIGARPTFYSLEMHLAVMLREVARFKPDLVVLDPISAFTESGQIGEVQSMLLRIVDYLKSNGITGAFTH FT LAHGAQTETDAGLSSLMDAWILLLNREAHGEFNRELYLLKARGIAHSNQVREFVMSDDGIHLLPPYLGEGGALTGSARRA FT EEAKERRVESERRTEVARLQDQIEQRRRRALAQIEALKADLAVDEAELQRLTQAEASFRAQSERDVTEMARRRGFIGSAD FT DTD* " FT gene complement(10724..12415) FT /locus_tag="Rpal_0009" FT /colour=15 FT CDS complement(12809..13318) FT /locus_tag="Rpal_0010" FT /product="transcriptional regulator, AsnC family" FT /note="PFAM: regulatory protein AsnC/Lrp family" FT /note="SPTR: Transcriptional regulatory protein - FT Bradyrhizobium japonicum" FT /note="KEGG: bra:BRADO0760 putative transcriptional FT regulatory protein, AsnC/Lrp family " FT /note="COGs: COG1522 Transcriptional regulators FT category=K" FT /note="InterPro IPR000485" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MTDIDSVVAESNRRLDAIDRKILTVLQQDASLSVAEIGDRVGLSSTPCWKRIQRLEADGVIIKRVALVDQDKIGLGLSVF FT VSIESGDHSDAWLKTFADAVSAMPEVIEFYRMAGDVDYMLRVVVADMRAYDQFYKKLIGTVPLKNVTSRFAMEKIKSVTA FT LPVPPMPVS* " FT gene complement(12809..13318) FT /locus_tag="Rpal_0010" FT /colour=6 FT CDS complement(13458..13667) FT /locus_tag="Rpal_0011" FT /product="hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_2219 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSHAFIIEVNSRAAGIVVRDGRSFRFHAACDDFSGLEGQGFRSPGDAQKAAVRHLEASPSGRGPKLRVA*" FT gene complement(13458..13667) FT /locus_tag="Rpal_0011" FT /colour=13 FT CDS complement(13806..14054) FT /locus_tag="Rpal_0012" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAMLTYDDRPRIAVAFEPPAKPAAAAVIEPAPTSDAAEAPTEPDDDVQERWLQAQPWPRRWFARFYRALRKLQPAFPPMSCC*" FT gene complement(13806..14054) FT /locus_tag="Rpal_0012" FT /colour=13 FT CDS complement(14056..14232) FT /locus_tag="Rpal_0013" FT /product="cytochrome oxidase maturation protein, FT cbb3-type" FT /note="TIGRFAM: cytochrome oxidase maturation protein, FT cbb3-type" FT /note="PFAM: cytochrome oxidase maturation protein FT cbb3-type" FT /note="SPTR: Nitrogen fixation protein fixS - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO2445 nitrogen fixation protein FixS FT " FT /note="COGs: COG3197 Uncharacterized protein possibly FT involved in nitrogen fixation category=P" FT /note="InterPro IPR004714" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MVILVPLALGLGLLGLVAFLWSLKSGQYEDLDGAAWRAIADDDPPLPPPANVPAEKRG*" FT gene complement(14056..14232) FT /locus_tag="Rpal_0013" FT /colour=9 FT misc_feature complement(14170..14226) FT /colour=11 FT /locus_tag="Rpal_0013" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(14170..14232) FT /colour=11 FT /locus_tag="Rpal_0013" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.731) with cleavage site probability 0.260 at FT residue 21" FT CDS complement(14232..16430) FT /locus_tag="Rpal_0014" FT /product="copper-translocating P-type ATPase" FT /note="TIGRFAM: ATPase, P-type (transporting), HAD FT superfamily, subfamily IC; copper-translocating P-type FT ATPase; heavy metal translocating P-type ATPase" FT /note="PFAM: Haloacid dehalogenase domain protein FT hydrolase; Heavy metal transport/detoxification protein; FT E1-E2 ATPase-associated domain protein" FT /note="SPTR: Nitrogen fixation protein fixI - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_2797 nitrogen fixation protein FixI FT " FT /note="COGs: COG2217 Cation transport ATPase category=P" FT /note="InterPro FT IPR000150:IPR001366:IPR001757:IPR005834:IPR006121:IPR006403:IPR006416:IPR008250" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MLQTRDFSHYVKDVDGRIAHLDLAVEGVHCASCMAKIERGLQSIPDVTLARVNLTDRRLAVEWNKGSTLEPGQFIDRLAE FT LGYKAYPYEPVRAEVEEAERTKFLLRCLGVAVFATMNVMMLSVPVWYGGDLSPEARDFFHWLSALVALPCAAYAGQPFFQ FT SAFRALKAKSVNMDVPITIGITLALGMSLVETINHAEHAYFDAAVMLIAFLLAGRFLDQKMRQKTRAVAGNLAALKAETA FT TKFVGPDEISEVPIAAVRAGDIVLLRPGERCAVDGTVIEGRSEIDQSLITGETLYVPAERGTQVYAGTLNISGTLRVRVA FT AAAEGTLLSEITRLLDHALQARSRYVRLADRASQLYAPVVHATALLTIIGWVLAGASWHDAIVIGIAVLIITCPCALGLA FT IPAVQTVASGAMFRAGVLLNAGDAIERAASVDTIVFDKTGTLTLPELDVVNAAGIPLEVFDLAGRLALASHHPVAAAVAR FT AAHAKSPLPNVVEEPGRGVRTVFGGQELRLGSPAFCGADAEANQILSEDPEVSVVAFSRGEQRVVFAVRQLLRPDAAKTI FT DALTNRGIAVELLSGDREPAVRHAAAALGVSAWRASVTPAEKIAHIEALKKQGRIVMMVGDGMNDAPSLAAAHVSMSPIS FT ATHLSQATADLVFLGKELAPVLAAVDYSRKAMAVMRENLGLAIGYNVLAVPIAIAGYATPLIAALAMSGSSLLVMLNAMR FT ARRVRRGAASWK* " FT gene complement(14232..16430) FT /locus_tag="Rpal_0014" FT /colour=9 FT misc_feature complement(order(14274..14324,14337..14393,15219..15284,15300..15365,15780..15836,15852..15905,15942..16007,16053..16118)) FT /colour=11 FT /locus_tag="Rpal_0014" FT /note="8 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(16465..16965) FT /locus_tag="Rpal_0015" FT /product="FixH family protein" FT /note="PFAM: FixH family protein" FT /note="SPTR: Nitrogen fixation protein fixH - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO2443 nitrogen fixation protein FixH FT " FT /note="COGs: COG5456 integral membrane protein linked to a FT cation pump category=P" FT /note="InterPro IPR008620" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSRSKSSPRPLTGKVVLAVLVAFFGIVFGVNGLMMTLAIKTLPGTEVDSAYAASLAYEREIAAARDQDQRGWKVEAKVER FT KPDGAAVLQVEARDKAGLPLAGLNFFGRLERPSDKRYDREVALAEVGSGVYRGDADGVLPGRWDLVLEGDQGGVRMFLSK FT NKLLLN* " FT gene complement(16465..16965) FT /locus_tag="Rpal_0015" FT /colour=9 FT misc_feature complement(16861..16926) FT /colour=11 FT /locus_tag="Rpal_0015" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(16876..16965) FT /colour=11 FT /locus_tag="Rpal_0015" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.972) with cleavage site probability 0.868 at FT residue 30" FT CDS complement(16985..18442) FT /locus_tag="Rpal_0016" FT /product="cytochrome c oxidase accessory protein CcoG" FT /note="TIGRFAM: cytochrome c oxidase accessory protein FT CcoG" FT /note="SPTR: Nitrogen fixation protein - Bradyrhizobium FT sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_2795 nitrogen fixation protein " FT /note="COGs: COG0348 Polyferredoxin category=C" FT /note="InterPro IPR001450:IPR014116" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MNKPLRATDLQPDDDGPLYTAQKKIFPQSVSGPFRRIKWILMAVCLGIYYFLPFVRWNRGLGAPDQAVLIDLANNRFYFF FT AIELWPQEIYYFTGLLIVAAIVLFLMNALGGRVWCGYLCPQTVWTDLFYAVERFVEGDRRERMRKAGEGFKMQRAAELAL FT KHSIWLMIAWWTGGAWVLYFADAPTLIKELVTFDAPMVAYIWIGILTFTTYTLAGFMREQVCVYMCPWPRIQAALTDEWA FT LNVTYKYDRGEKRSSLKKAAQLRALGEPVGDCVDCNQCVAVCPTGIDIRNGPQLDCIQCGLCIDACDNVMTKIGRPTRLI FT GYDNDINIHRRMEGKPEIFKPVRARTVIYSLIIVAIGGAMLYKLATRSLLDVNVLHDRNPVAVRLSDGSVRNGYTIRFLN FT KRGFDRVVAVDVEGPPNAMIHIVGADSITPARPMIILGRDTTTELRVLVDSNTNDDVPQSVPVTFHVTDIGLGEVASTKD FT VFVTP* " FT gene complement(16985..18442) FT /locus_tag="Rpal_0016" FT /colour=3 FT misc_feature complement(order(17345..17401,17792..17857,17903..17968,18110..18175,18272..18325)) FT /colour=11 FT /locus_tag="Rpal_0016" FT /note="5 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(18559..19440) FT /locus_tag="Rpal_0017" FT /product="cytochrome c oxidase, cbb3-type, subunit III" FT /note="TIGRFAM: cytochrome c oxidase, cbb3-type, subunit FT III" FT /note="PFAM: cytochrome c class I" FT /note="SPTR: Cytochrome-c oxidase fixP chain - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO2441 cytochrome-c oxidase FixP chain FT " FT /note="COGs: COG2010 Cytochrome c mono- and diheme FT variants category=C" FT /note="InterPro IPR003088:IPR004678:IPR008168:IPR009056" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MADHAHHGEIDKVTGTATTGHEWDGIQELNTPLPRWWIWTFYATIIWSIGYFIVYPAWPLMNGYTHGLFGYSSRAELDVD FT LAKLNQVRGEKMQALATASLEEIEKNPALLALARAKGKVVFGDNCAPCHGSGAAGGKGFPNLNDDDWLWGGSLEQIEKTI FT KYGARSGNDEGHMGNMLAFGKDGTLTKDQIVQVANFVRSLSGQSTRPGVDLAAGKQIFAENCVACHGEDAKGNPELGAPN FT LTDKIWLYGGDEATIIETITNGRGGVMPAWIGRLDPTTIKAMAVYVHSLGGGK* " FT gene complement(18559..19440) FT /locus_tag="Rpal_0017" FT /colour=3 FT misc_feature complement(19267..19332) FT /colour=11 FT /locus_tag="Rpal_0017" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(19448..19612) FT /locus_tag="Rpal_0018" FT /product="Cbb3-type cytochrome oxidase component" FT /note="PFAM: Cbb3-type cytochrome oxidase component" FT /note="SPTR: Transmembrane protein - Bradyrhizobium FT japonicum" FT /note="KEGG: bra:BRADO2440 cytochrome oxidase subunit, FT FixQ " FT /note="InterPro IPR008621" FT /codon_start=1 FT /transl_table=11 FT /colour=0 FT /translation="MKAIIYFDNIASSLVTTWWTPLFMAIFVAIVVYALWPKNKEAFDEAAQMPLRED*" FT gene complement(19448..19612) FT /locus_tag="Rpal_0018" FT /colour=0 FT misc_feature complement(19502..19567) FT /colour=11 FT /locus_tag="Rpal_0018" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(19622..20356) FT /locus_tag="Rpal_0019" FT /product="cytochrome c oxidase, cbb3-type, subunit II" FT /note="TIGRFAM: cytochrome c oxidase, cbb3-type, subunit FT II" FT /note="PFAM: cytochrome C oxidase mono-heme subunit/FixO" FT /note="SPTR: Cytochrome-c oxidase fixO chain - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_2793 cytochrome-c oxidase FixO chain FT " FT /note="COGs: COG2993 Cbb3-type cytochrome oxidase FT cytochrome c subunit category=C" FT /note="InterPro IPR003468:IPR009056" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MSIWARHKIFETNSVVLIVGILLVIAIGGLVEITPLFYLKSTIEKVDGVRPYTPLELAGRNIYIREGCYLCHSQMIRPLR FT DEIERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGKYSDDWHVAHLKNPRSIVPQSVMPNYAFLADNKVDVASLSDHL FT KTNRTLGVPYSDEDIAKAAADAKAQVDPEGAAAADLQKRYPKAVVRNFDGQPGDPTELDALVSYLQMLGTLVDFKLYDEK FT ANLR* " FT gene complement(19622..20356) FT /locus_tag="Rpal_0019" FT /colour=3 FT misc_feature complement(20252..20317) FT /colour=11 FT /locus_tag="Rpal_0019" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(20369..22015) FT /locus_tag="Rpal_0020" FT /product="cytochrome c oxidase, cbb3-type, subunit I" FT /EC_number="1.9.3.1" FT /note="TIGRFAM: cytochrome c oxidase, cbb3-type, subunit FT I" FT /note="PRIAM: Cytochrome-c oxidase" FT /note="PFAM: cytochrome c oxidase subunit I" FT /note="SPTR: Q03073 Cytochrome c oxidase subunit 1 FT homolog, bacteroid (EC 1.9.3.1) (Cytochrome c oxidase FT polypeptide I homolog) (Cytochrome CBB3 subunit 1) (Heme FT B/copper cytochrome c oxidase subunit). Bradyrhizobium FT japonicum." FT /note="KEGG: bja:blr2763 cytochrome-c oxidase " FT /note="COGs: COG3278 Cbb3-type cytochrome oxidase subunit FT 1 category=O" FT /note="InterPro IPR000883:IPR004677" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MNQALNSKRITLGEGGLTVVFALTTILSIYAAIYAKDAPFAFHAALAAAFSAWAVFAIIVRHRSRSGLPPQEINGAPNYN FT LGPIKFLSFMAMFWGIAGFSAGLYIALELAYPGLNIAQWVNFGRLRPLHTSAVIFAFGGNVLLATSFYVVQKTTRARLAG FT DLAPWFVAIGYNFFIVIAGTGYLLGVTQSKEYAEPEWYADLWLTIVWVTYLLVFLATLMKRKEPHIYVANWFYLAFIITI FT AVLHLGNNPTLPVSFLGSKSYIAWSGVQDAMFQWWYGHNAVGFFLTAGFLAIMYYFIPKRAERPVYSYRLSIIHFWALIF FT LYIWAGPHHLHYTALPDWTQTLGMTFSIMLWMPSWGGMINGLMTLSGAWDKLRTDPVLRMMVVSVAFYGMSTFEGPMMAI FT KAVNSLSHYTDWTIGHVHSGALGWVGFVSFGALYCLVPWVWGRKQLYSIRLVNWHFWIATLGIVLYISAMWVSGILQGLM FT WRAYTSLGFLEYSFIESVEAMHPFYAIRAAGGGLFLIGALIMAYNLWMTVRVGERSEAQPRVALQPAE* FT " FT gene complement(20369..22015) FT /locus_tag="Rpal_0020" FT /colour=9 FT misc_feature complement(order(20438..20503,20588..20653,20690..20755,20816..20872,20909..20974,21020..21085,21125..21190,21281..21337,21359..21424,21464..21529,21566..21631,21692..21757,21836..21901,21914..21979)) FT /colour=11 FT /locus_tag="Rpal_0020" FT /note="14 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(22326..23246) FT /locus_tag="Rpal_0021" FT /product="2-dehydropantoate 2-reductase" FT /EC_number="1.1.1.169" FT /note="TIGRFAM: 2-dehydropantoate 2-reductase" FT /note="PRIAM: 2-dehydropantoate 2-reductase" FT /note="PFAM: Ketopantoate reductase ApbA/PanE domain FT protein" FT /note="SPTR: 2-dehydropantoate 2-reductase - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0313 2-dehydropantoate 2-reductase " FT /note="COGs: COG1893 Ketopantoate reductase category=H" FT /note="InterPro IPR001100:IPR003710:IPR013332:IPR013752" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MRILIVGAGAIGGYFGGRLLQLGRDVTFLVRPGRAAELTRDGLVIKSPHGDATIQNPPAVQAAALTPDYDLVVLSCKAFD FT LDDAIASFRGGVSPRTAILPLLNGMKHLDVLDTAFGRDRVLGGQCVIAATLDAQRHVVQLAPMSAITFGERDGASSERVA FT QIAVALGGSDFGVNASPVIMQEMWEKWVFLATLAGSTSLMRGAVGEILVAPGGADFMLGVLDEITSIAAAAGHPPRPVAV FT ERTRNMLLAEGSTLTASMFRDILAGARIEADHVVGDLIDRADEAKVPVPRLRVIYTHLKTYERRRG* FT " FT gene complement(22326..23246) FT /locus_tag="Rpal_0021" FT /colour=12 FT CDS complement(23320..24057) FT /locus_tag="Rpal_0022" FT /product="short-chain dehydrogenase/reductase SDR" FT /note="PFAM: short-chain dehydrogenase/reductase SDR" FT /note="SPTR: Putative Acetoin(Diacetyl) reductase - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0329 putative acetoin(diacetyl) FT reductase (acetoin dehydrogenase) (AR) FT (meso-2,3-butanediol dehydrogenase); oxidoreductase, short FT chain dehydrogenase; putative short chain dehydrogenase " FT /note="COGs: COG4221 Short-chain alcohol dehydrogenase of FT unknown specificity category=R" FT /note="InterPro IPR002198:IPR002347" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEEEVTAFLNAADAHA FT PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLARGQGKIFFTGATASLRGGSGFAAFASAKFGL FT RAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLYQQPKSAWTFEMEIRP FT YGEKW* " FT gene complement(23320..24057) FT /locus_tag="Rpal_0022" FT /colour=11 FT CDS complement(24176..24778) FT /locus_tag="Rpal_0023" FT /product="DSBA oxidoreductase" FT /note="PFAM: DSBA oxidoreductase" FT /note="SPTR: Blr0588 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0588 hypothetical protein " FT /note="COGs: COG3917 2-hydroxychromene-2-carboxylate FT isomerase category=Q" FT /note="InterPro IPR001853" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTQPPPQFLFDFGSPNAFLAHEAIPAIEQRIGVKFDYVPVLLGGIFKATNNKSPAETLAGIKNKREFLVVETERFLKRYA FT VKPYVWNPHFPVNTLNLMRAAVAAQLEGVFEKYVEAAFHHMWVEPKKMDDLEVAAAALSSSGLDGKALLTRAQEPEVKAK FT LIANTEDAVQRGVFGSPTFFVGKEMFFGKEQLRDVEELYG* " FT gene complement(24176..24778) FT /locus_tag="Rpal_0023" FT /colour=9 FT CDS 24994..25662 FT /locus_tag="Rpal_0024" FT /product="Glutathione S-transferase domain" FT /note="PFAM: Glutathione S-transferase domain" FT /note="SPTR: Glutathione S-transferase family protein - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0585 glutathione S-transferase family FT protein " FT /note="COGs: COG0625 Glutathione S-transferase category=O" FT /note="InterPro IPR004045:IPR004046" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MLTVHHLNNSRSQRVLWLLEELDTPYEIKRYQRQPDMMAPKELRAVHPLGKSPVITDNGNTIAESGAIVEYIVGTYGNGR FT LIPPPNTPERLRYTYWLHYAEGSAMPPLLLKLLFSMMPQRAPALVRPLVKMVASGALTGFVDPQLKLHMDYWESELGKAA FT YFAGDQFTAADIQMSFPLEAAASRGGLDQRYPKAQAWLERIHARPAYNRALEKGGPYEIGKA* FT " FT gene 24994..25662 FT /locus_tag="Rpal_0024" FT /colour=9 FT CDS complement(25778..26653) FT /locus_tag="Rpal_0025" FT /product="short-chain dehydrogenase/reductase SDR" FT /note="PFAM: short-chain dehydrogenase/reductase SDR" FT /note="SPTR: Short-chain dehydrogenase/reductase SDR - FT Methylobacterium sp. 4-46" FT /note="KEGG: mex:Mext_3612 short-chain FT dehydrogenase/reductase SDR " FT /note="COGs: COG1028 Dehydrogenase with different FT specificities (related to short-chain alcohol FT dehydrogenase) category=Q" FT /note="InterPro IPR002198:IPR002347" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MASLQGKTLFITGASRGIGLAIALRAARDGANVAIAAKTTEPHPKLKGTIYTAAEEIVAAGGKALPMVCDIRDEAQVIDA FT IGKTVAEFGGIDICVNNASAISLTNSQATDMKRYDLMMGINTRGTFMVSKYCIPHLKKAANPHILMLSPPLDMKAKWFAA FT STAYTMAKFGMSMVALGLSGELKHAGVAVNALWPRTTIATAAVGNLLGGDAMIRASRTPEIMGDAAHAILARPSREFTGQ FT FCIDDSVLYEAGVRDFEPYRVDPSVPLMSDFFVPDDSVPPPGVTVTPLPMG* " FT gene complement(25778..26653) FT /locus_tag="Rpal_0025" FT /colour=9 FT CDS complement(26926..28659) FT /locus_tag="Rpal_0026" FT /product="gamma-glutamyltransferase" FT /EC_number="2.3.2.2" FT /note="TIGRFAM: gamma-glutamyltransferase" FT /note="PRIAM: Gamma-glutamyltransferase" FT /note="PFAM: gamma-glutamyltranspeptidase" FT /note="SPTR: Gamma-glutamyltransferase precursor - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0191 gamma-glutamyltransferase " FT /note="COGs: COG0405 Gamma-glutamyltransferase category=E" FT /note="InterPro IPR000101" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MITLRVPQRILMTLAALVLVVIPLAAPAQDMRSGMARGPTQAVVAKHGMVVAQERLAAKIGAGFLSRGGNAIDAAVATGF FT AMAVTYPRAGNLGGGGFMVIHSAVKNEDVAIDYRETAPQAATQDMFLTDGKPDPDKSRKSALGIGVPGTVAGLALALEKY FT GSGKFKLADVIAPAIALARDGITVADDTADTLPDWHAWLSRWPSTRKVFARPDGSPLQAGDRLVQPDLAATLEAIAKQGP FT DGFYRGPIAEKLSRGIRDAGGLITPEDLAGYQPMLRSPLRGNYRGYDIVAMPQPSSGGVVLIESLNILEGYAMRDLGQGT FT PPSLHLLIEAMKRAYADRARYLGDPAFSEAPMTKLLSKDYAASLRAGIDPQRATPVAEPLPQPREGQNTTHFSVADAEGN FT AVSNTYTLNFSYGVGLVADGTGVLLNNELDDFTAAPGASNAYGLVGFAANLPAPGKRPLSSMSPTILLKDGKPVLVTGSP FT GGSRIISAVLQVIVDVIDYRMNVADAVAAPRLHHQWLPDEVRVEGGFPEATLDTLRAMGHRIVTPLGQTSANSILIDADG FT FHGAPDPRTRGATAAGN* " FT gene complement(26926..28659) FT /locus_tag="Rpal_0026" FT /colour=10 FT misc_feature complement(28573..28638) FT /colour=11 FT /locus_tag="Rpal_0026" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(28582..28659) FT /colour=11 FT /locus_tag="Rpal_0026" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.996) with cleavage site probability 0.993 at FT residue 26" FT CDS 28765..30162 FT /locus_tag="Rpal_0027" FT /product="major facilitator superfamily MFS_1" FT /note="PFAM: major facilitator superfamily MFS_1" FT /note="SPTR: Major facilitator superfamily MFS_1 - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0192 major facilitator superfamily FT MFS_1 " FT /note="COGs: COG2270 Permease of the major facilitator FT superfamily category=R" FT /note="InterPro IPR007114:IPR011701" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSSSLAEGIAQTREPIRYPPQSAVVGWILFDWAAQPYFTLITTFIFAPYFATYVAPDPATGQSLWGFATAASGFVIALAS FT PVLGAIADASGRRKPWIALFGGMLVIGSMLMWFGKPGEPNTILPLLIAYALATIGVEFATVFNNAMMPNLVPPEKIGRLS FT GTGWATGYVGGILSLILVLGFLAASPETGKTLLGITPWFGLDPALHEGDRISGPLTGMWFVVFVLPMFLLTPDFPAKLAP FT RAAIREGLRELGETLRDLPRRRSLAIFLLANMIYTDGLVSLFAFGGIYATGTFGWSTIQIGTFGVILAIAATIGAFTGGR FT LDDAFGSKRVITGSLLLLLVAIAGILLIDPSHVLLIEVTPPQPGAALFASPAERAYLLLGCLIGIAGGPLQAASRTLLIR FT IAPRDRIAQYFGLFALTGKVTSFIGPLLIASVTALASSQKAGMAVLVLFFVAGLALLTQVRRSAD* FT " FT gene 28765..30162 FT /locus_tag="Rpal_0027" FT /colour=11 FT misc_feature order(28861..28929,28954..29022,29050..29103,29122..29190,29248..29316,29563..29631,29659..29727,29764..29832,29890..29958,29992..30060,30088..30144) FT /colour=11 FT /locus_tag="Rpal_0027" FT /note="11 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 30377..31471 FT /locus_tag="Rpal_0028" FT /product="phospho-2-dehydro-3-deoxyheptonate aldolase" FT /EC_number="2.5.1.54" FT /note="TIGRFAM: phospho-2-dehydro-3-deoxyheptonate FT aldolase" FT /note="PRIAM: 3-deoxy-7-phosphoheptulonate synthase" FT /note="PFAM: DAHP synthetase I/KDSA" FT /note="SPTR: 2-dehydro-3-deoxyphosphoheptonate aldolase - FT Rhizobium loti (Mesorhizobium loti)" FT /note="KEGG: mlo:mll4988 FT phospho-2-dehydro-3-heoxyheptonate aldolase " FT /note="COGs: COG0722 3-deoxy-D-arabino-heptulosonate FT 7-phosphate (DAHP) synthase category=E" FT /note="InterPro IPR006218:IPR006219" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="VLTTTDDLRLQKITELSTPAEVMGEIPRTLTATRTVAASRSAIHAILTGADDRLLVVVGPCSIHDPAAAMDYASRLAALR FT ETLADRLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFRIDKGLRLAREVLSAVNNLGLPAATEFLDLITPQYIADLVAWG FT AIGARTTESQIHRELASGLSCPIGFKNGTDGNVRIAAEAVKSAAQPHHFMAVTKGGRNAIAATTGNSDCHVILRGGVTPN FT YDAASVETAAAVLGKIGLPPRLMIDASHANSSKQPDNQPKVTADIGRQMAAGESRIIGVMIESNLVAGRQDVAPGRPLQY FT GQSITDGCIDWATTETVLHELADAVESRRAARHAASAQQKGAAA* " FT gene 30377..31471 FT /locus_tag="Rpal_0028" FT /colour=10 FT CDS complement(31529..33121) FT /locus_tag="Rpal_0029" FT /product="phosphoribosylaminoimidazolecarboxamide FT formyltransferase/IMP cyclohydrolase" FT /EC_number="2.1.2.3" FT /note="TIGRFAM: phosphoribosylaminoimidazolecarboxamide FT formyltransferase/IMP cyclohydrolase" FT /note="PRIAM: Phosphoribosylaminoimidazolecarboxamide FT formyltransferase" FT /note="PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme FT formylation region" FT /note="SPTR: Q89WU7 Bifunctional purine biosynthesis FT protein purH [Includes: FT Phosphoribosylaminoimidazolecarboxamide formyltransferase FT (EC 2.1.2.3) (AICAR transformylase); IMP cyclohydrolase FT (EC 3.5.4.10) (Inosinicase) (IMP synthetase) FT (A-TRUNCATED-" FT /note="KEGG: bja:blr0581 bifunctional FT phosphoribosylaminoimidazolecarboxamide FT formyltransferase/IMP cyclohydrolase " FT /note="COGs: COG0138 AICAR transformylase/IMP FT cyclohydrolase PurH (only IMP cyclohydrolase domain in FT Aful) category=F" FT /note="InterPro IPR002695:IPR011607:IPR013982" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MTQNPRRVTRALLSVSDKTGLIDFARALAGHGVELVSTGGTAKAIAAAGLPVKDVSELTGFPEMMDGRVKTLHPKVHGGL FT LAIRDNDEHTQAMAAHGIPQIDLLVVNLYPFEATVDKGASYEDCIENIDIGGPAMIRAAAKNHDDVAVVVEASDYQAVLD FT ELTANNGATTLPLRKRLAAKAYARTAAYDAAISNWFALQLKTDAPDFRAIGGRLIQSLRYGENPHQTAAFYATPEKRPGV FT ATARQVQGKELSYNNINDTDAAYECVGEFDAARTAACVIVKHANPCGVAEGSSLLDAYKKALACDSVSAFGGIVALNRTL FT DAEAARAITEIFTEVIIAPDATDEAIAIVAAKKNLRLLLAGALPDPRANGLTYKTVAGGLLVQSRDNAVVDDMALKVVTK FT RQPTEAELRDLKFAFRVGKHVKSNTIIYAKDLATVGIGAGQMSRVDSARIAARKAQDAAEAMKLAAPMTKGSVVASDAFF FT PFADGMLACIEAGATAVIQPGGSVRDDEVIKAADDAGIAMVFTGTRHFRH* " FT gene complement(31529..33121) FT /locus_tag="Rpal_0029" FT /colour=16 FT CDS complement(33307..35061) FT /locus_tag="Rpal_0030" FT /product="Heparinase II/III family protein" FT /note="PFAM: Heparinase II/III family protein" FT /note="SPTR: Blr0580 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0580 hypothetical protein " FT /note="COGs: COG5360 conserved hypothetical protein FT category=S" FT /note="InterPro IPR012480" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VSATPRRGISALIVGRFARTVMARASGGSVAVTRLWPGRTDRLIIAPHDLRTADATRAAEIYAGRFVFAGKIVTCHGRSI FT FDLEPPSDDWEAALLGFGWLRHLRAADTAITRANARSLVDDWLSNMSRTGPVGRRPDVLARRVISLLSQAPLVLSDTDGK FT FYRRYLRGLTREIRALRYALLDVQDGVPRLQVLIALCYASLCLANQARQIRGATKKLSDELQRQILPDGGHISRNPSALI FT ELLIDLLPLRQTFAARNIAPPPALLNAIDRMMPMLRFFRHGDGNFALFNGMSATPSDLLATLLAYDDSQGTPLASMPHSG FT YQRIDAGTTLVIVDAGTPPPANVSQEAHAGCLSFELSSGPCRIVINSGMPTTNRESWRGFARSTVAHSTVTCHDTSSCSF FT VERSAMKRFLHGAPVVGGPRQVENRREEVAGGVLLTTSHDGYRDKFGVLHRRVLMVKHDGSRVDGEDSLSPVQGGRHRAA FT QADYAVRFHLHPLVKASRLHDARGVMLVLPNREVWTFEAADDKVDLEETVFLAGNDGPRRSTQIVIRQNSIEAPNLRWSF FT IRSNASPQATSARRAARHEPELPL* " FT gene complement(33307..35061) FT /locus_tag="Rpal_0030" FT /colour=13 FT sig_peptide complement(34990..35061) FT /colour=11 FT /locus_tag="Rpal_0030" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.748) with cleavage site probability 0.698 at FT residue 24" FT CDS complement(35360..36712) FT /locus_tag="Rpal_0031" FT /product="Fmu (Sun) domain protein" FT /note="PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44" FT /note="SPTR: SUN protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0579 SUN protein " FT /note="COGs: COG0144 tRNA and rRNA cytosine-C5-methylase FT category=J" FT /note="InterPro IPR001678:IPR006027" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MPAPRFAQASEVPGLAARRIAADILDGVLQKRRMLDDQLEGPAAHPGLKTLSDRDRALMRRLVATILRRLGTLEGLLAKL FT LDRGVPTDAPRAKSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAGLVNAVLRRCAREGQPLVEELAAGTPDVP FT QWLLARWSEHYGAETARAIAHAISHEPSLDLTVKSDPAHWAARLHGEVLPTGTVRTLLQGSVRMLPGFDEGQWWVQDAAA FT ALPARLFGDIAGKSVADLCAAPGGKTAQLAAAGARVTAIDRSPARVARLRENLARLSFEVETGVADAAEWRGDETAEFDA FT VLIDAPCASTGTIRRHPDVAWLKQESDIGALAAVQNRLLKKAASLLRPGGTLVYCTCSLEPEEGEQAIAALLDAESSMRR FT QPIDPAEVAGLAEIVTADGALRTLPCHLPHSDPRLAGLDGFYAARLVKSL* " FT gene complement(35360..36712) FT /locus_tag="Rpal_0031" FT /colour=7 FT CDS 36865..37083 FT /locus_tag="Rpal_0032" FT /product="protein of unknown function DUF1674" FT /note="PFAM: protein of unknown function DUF1674" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0326 hypothetical protein " FT /note="InterPro IPR012875" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTNPDPKSATMDAAPPRKDLPEAAKRALAEAEARRVEAAKHAEARAKEVQGPKGPEPTRYGDWEVKGIASDF*" FT gene 36865..37083 FT /locus_tag="Rpal_0032" FT /colour=13 FT CDS 37169..37744 FT /locus_tag="Rpal_0033" FT /product="nuclease (SNase domain protein)" FT /note="PFAM: nuclease (SNase domain protein)" FT /note="SPTR: Staphylococcus nuclease - Nitrobacter FT winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_0154 staphylococcus nuclease FT (SNase-like) " FT /note="InterPro IPR006021" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSPYPRTNPVRISRLPWRSRLWPWVFVLGVAAGTMLPARHWLLHLPWLQPPASQGIDNDSETVWRRAGNPTTRHPVDVLY FT TIDGDTFDARVHLWPGTDLRTRVRLRGIDAPELKAQCARELRMAEAAAEALRRLLAEGEVAIYNIGPDKYQGRVVADVAT FT KRTANVSNALLDGGYARAYGGGHRDGWCGGR* " FT gene 37169..37744 FT /locus_tag="Rpal_0033" FT /colour=11 FT misc_feature 37229..37297 FT /colour=11 FT /locus_tag="Rpal_0033" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(37748..38632) FT /locus_tag="Rpal_0034" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0145 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MGVVLETIGKLIASYLQKEEPGYEPFTPSDPDHLRTIMEPGDVLLVEGNSRIAGIIKYLTQSTWSHAALYVGPIDGVTEP FT DGEPHVLVEANIGEGVSSSPLSRHLAYHTRVCRPVGLSYEDRHTVCRYAINRIGFGYDTKNIIDLMRYLVPLPVPQRWRR FT RMIALGSGDPTKIICSALIAQAFEAVRYPILPKITKAGSRAARREILHIRHSTLYMPRDFDISPYFEVVKPTIVNGFDYT FT ALHWADKPKPVVESDSPFASPIEGSESAPSLATQTAEADPALDLAGPPKLGAVA* " FT gene complement(37748..38632) FT /locus_tag="Rpal_0034" FT /colour=13 FT CDS 38980..40437 FT /locus_tag="Rpal_0035" FT /product="amine oxidase" FT /note="PFAM: amine oxidase; FAD dependent oxidoreductase" FT /note="SPTR: Blr0703 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0703 hypothetical protein " FT /note="COGs: COG1231 Monoamine oxidase category=E" FT /note="InterPro IPR002937:IPR003042:IPR006076:IPR006311" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MTISRRSLLEGLLGATAGLALLPVLGGRANAALPREAEVVVVGAGAAGIAAARRIVAAGRKVIVVEAASEIGGRCVTDTT FT SFAAPFDRGARWLHNPDSNPLVRLARSSGFAVTPVAPGQKVRIGRRNARSRETEDFLAAFVRASRAISDASRGKSDISCA FT AALPNDLGDWAATIEYVLGPATTSKDLRALSAMDAVRTLDRTALLGCPQGVGSLLTQLASSLPIALSTPVKRIVWSGRDL FT AVETAAGRIGARAIIVTASTNVLTSGNLGFSPELPKRQLDAAARLSLGSIDRIALQFKGNPLGLSRDETIIERADDIRTA FT TLVGNIGGTSLCTVDVAGSFGRQLAAQGEAAMQDFAIEWLGKLFGSDIAGAVERKAVTRWNEMPYVLGAMSAAEPGGQPS FT RKVLGEPLGNLFFAGEATHETLFGTVQGAWESGERAADAALKKIGAVKEPAPEKPLRKQKPRREPQRQREQRPPATASGT FT PSWWR* " FT sig_peptide 38980..39075 FT /colour=11 FT /locus_tag="Rpal_0035" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.981 at FT residue 32" FT gene 38980..40437 FT /locus_tag="Rpal_0035" FT /colour=10 FT CDS complement(40444..42855) FT /locus_tag="Rpal_0036" FT /product="phenylalanyl-tRNA synthetase, beta subunit" FT /EC_number="6.1.1.20" FT /note="TIGRFAM: phenylalanyl-tRNA synthetase, beta FT subunit" FT /note="PRIAM: Phenylalanine--tRNA ligase" FT /note="PFAM: t-RNA-binding domain protein; ferredoxin-fold FT anticodon-binding; B3/4 domain protein; tRNA synthetase FT B5" FT /note="SPTR: Phenylalanyl-tRNA synthetase beta subunit - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0212 phenylalanyl-tRNA synthetase FT subunit beta " FT /note="COGs: COG0072 Phenylalanyl-tRNA synthetase beta FT subunit category=J" FT /note="InterPro FT IPR002547:IPR004532:IPR005121:IPR005146:IPR005147" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MKLTLSWLKDHLDTDEPLEKLADKLTMIGLEVEGIEDKAKVLAPFTIAKVLTAAKHPNADKLQVCTVDVGDGAAPVQVVC FT GAPNARAGLVTVFAPPGTYIPAKDFTLGIGNIRGVESRGMLCSAAELQISEDHDGIIELPADAPVGAAYAAWAGLGDPVL FT DINLTPNRQDCAGVHGIARDLAAADMGKFKDPGIKPIKGEFPCPVSVTVEDSTLCPGFALRLVKGVKNGPSPEWLQKRLT FT AIGLRPINALVDITNYLTFDRSRPLHVFDAAKVKGNLVVRRAKDGETLLALDGRTYTLDSSVCVIADDHGVESLAGIMGG FT ELSGCSAETTDVLIESALWNEINIAQSGRKLGINTDARYRFERGVDPAFMLPGLELATKLVMEFCGGTPSEAVVVGNPFA FT DDKIIDFPLAEVKRLAGIEVSLTEIRRILNHLGFTVVGQAPVVKVAVPSWRSDVHGKADIVEEIVRIVGVDKVPLTPFER FT GDAPRKPVLTQIQNRTRRAKRALAARGLTEAVTWSFISKPFAEAFGGGQPELALANPIASDLSDMRPSLLPGLIAAAQAN FT ADRGSPDLSLFEVGQVFKGDRPQDQFMAASGVRRGVASSAGLGRHWSGSAQATALDAKADAFAVLAAAGAPMAGLQIATN FT KLPAWLHPGRSGAIQIGPQNVLGYFGELHPRVLEQLGADGPLVAFEVILEKIPDPKQRPTRAKPALELSAFHPVSRDFAF FT IVDRKVAVADIVRAAQGVDKKLITSVSVFDVYEGKGIDPDKKSVAIAVTLQPRDKTMTDQEIEAVAAKIVAEVTKKTGGS FT LRG* " FT gene complement(40444..42855) FT /locus_tag="Rpal_0036" FT /colour=7 FT CDS complement(43000..43479) FT /locus_tag="Rpal_0037" FT /product="protein of unknown function DUF559" FT /note="PFAM: protein of unknown function DUF559" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0213 hypothetical protein " FT /note="COGs: COG2852 conserved hypothetical protein FT category=S" FT /note="InterPro IPR007569" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MDDPKQPTWNVSPSQRRHARELRKKSTEAERLMWGELRDKRLNGVSFKRQVPIGPYIADFACHAKKLVVELDGGQHFPDD FT GERSDAARTAAIEARGFRVIRFSNHEVMTNRAGVLQSIADVLAARALPPTLSRKRERVRAKRAAKPRSDAGAANDQGDE* FT " FT gene complement(43000..43479) FT /locus_tag="Rpal_0037" FT /colour=13 FT CDS complement(43710..44792) FT /locus_tag="Rpal_0038" FT /product="phenylalanyl-tRNA synthetase, alpha subunit" FT /note="TIGRFAM: phenylalanyl-tRNA synthetase, alpha FT subunit" FT /note="PFAM: phenylalanyl-tRNA synthetase class IIc; FT aminoacyl tRNA synthetase class II domain protein" FT /note="SPTR: Phenylalanyl-tRNA synthetase, alpha subunit - FT Nitrobacter sp. Nb-311A" FT /note="KEGG: bra:BRADO0139 phenylalanyl-tRNA synthetase FT subunit alpha " FT /note="COGs: COG0016 Phenylalanyl-tRNA synthetase alpha FT subunit category=J" FT /note="InterPro IPR002319:IPR004188:IPR004529:IPR006195" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MSNLENLQSQILADIAAAADEAALEAVRVGALGKKGSISALLATLGKMDPEQRKTEGAAINRAKEAVTDALTARRDVLKA FT AALDAKLAAETIDVTLPMREPAAEQGRLHPLSQVWDELTAIFADMGFSIAEGPDIETDDYNFTKLNFPEGHPAREMHDTF FT YFNPKEDGSRLLLRTHTSPVQVRTMLSQRPPIRVICPGRTYRSDSDQTHTPMFHQVEGLVIDKGSHLGHLKWILHEFCKA FT FFEVDNVNMRFRPSFFPFTEPSLEVDIQCRRGKDEIRFGEGEDWLEILGCGMVHPNVLTACGLDPDEYQGFAWGMGIDRI FT AMLKYGMSDLRQLFEADVRWLNHYGFKPLDIPTLAGGLSS* " FT gene complement(43710..44792) FT /locus_tag="Rpal_0038" FT /colour=7 FT CDS complement(44936..45295) FT /locus_tag="Rpal_0039" FT /product="ribosomal protein L20" FT /note="TIGRFAM: ribosomal protein L20" FT /note="SPTR: Q1QS21 50S ribosomal protein L20. Nitrobacter FT hamburgensis (strain X14 / DSM 10229)." FT /note="KEGG: nha:Nham_0075 50S ribosomal protein L20 " FT /note="COGs: COG0292 Ribosomal protein L20 category=J" FT /note="InterPro IPR005812:IPR005813" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MARVKRGVTAHAKHKKVYKLAKGYRGRRKNTIRTAKAAVDKAGQYAFRDRKRKKRTFRALWIQRLNAAVRPFGMTYSVFI FT NGLSKSGIVVDRKVLSDLAINEPAAFQAIAEKAKAALAA* " FT gene complement(44936..45295) FT /locus_tag="Rpal_0039" FT /colour=7 FT CDS complement(45379..45579) FT /locus_tag="Rpal_0040" FT /product="ribosomal protein L35" FT /note="PFAM: ribosomal protein L35" FT /note="SPTR: A5E8L9 50S ribosomal protein L35. FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)." FT /note="KEGG: bbt:BBta_0216 50S ribosomal protein L35 " FT /note="InterPro IPR001706" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPKLKTKSGAKKRFKVTATGKVMSAQRGKRHGMIKRTKKQIRQLRGTRAIFKTDGDNIKKYFLPNA*" FT gene complement(45379..45579) FT /locus_tag="Rpal_0040" FT /colour=11 FT CDS complement(45913..46491) FT /locus_tag="Rpal_0041" FT /product="translation initiation factor IF-3" FT /note="TIGRFAM: translation initiation factor IF-3" FT /note="PFAM: initiation factor 3" FT /note="SPTR: Bacterial translation initiation factor 3 - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0218 translation initiation factor FT IF-3 " FT /note="COGs: COG0290 Translation initiation factor 3 FT (IF-3) category=J" FT /note="InterPro IPR001288" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="LFAVNVHKCGEAPIRRPNRAPPPVAKDGPRTNDEIRNFEIQLIDQTGVNQGKVETIVAIKMAMDAGMDLVEISPTSSPPV FT CKIMDYGKYKYSAQKKAAEARKKQKIVEIKEIKLRPMIDDHDYEVKMKAMQRFFEEGDKVKITLRYRGREMAHQEIGTKL FT LEKVKNDVAEIAKVEQDPRFEGRQVVMVLAPR* " FT gene complement(45913..46491) FT /locus_tag="Rpal_0041" FT /colour=7 FT CDS 46773..47558 FT /locus_tag="Rpal_0042" FT /product="conserved hypothetical protein, putative FT alpha/beta hydrolase superfamily" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0132 conserved hypothetical protein, FT putative alpha/beta hydrolase superfamily " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTKSPEPAPDFVTVGDGAPARRIAVRARPGASPGLFWLGGFNSDMTGTKATALDQWAEARGRACVRFDYSGHGESSGSFA FT DGTIGRWLEESLAVFDAYARGPQIVVGSSMGGWMALLLARALRRRGGDAAAKLAGLVLIAPAPDFTEALMWKGFSLEIRA FT EIETKGVWHRPSEYGEPYPITKALIEDGRNHLVLDGMIEVGCPVRILQGKQDEDVPWRHAFELAERLPTDDVVLTMIQDG FT DHRLSRPQDIARMLAAVEELG* " FT gene 46773..47558 FT /locus_tag="Rpal_0042" FT /colour=13 FT CDS complement(47716..48828) FT /locus_tag="Rpal_0043" FT /product="domain of unknown function DUF1730" FT /note="PFAM: domain of unknown function DUF1730" FT /note="SPTR: Iron-sulfur cluster binding protein - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0714 iron-sulfur cluster binding FT protein " FT /note="COGs: COG1600 Uncharacterized Fe-S protein FT category=C" FT /note="InterPro IPR001450:IPR013542" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="LKARLAEQARALGFDAFGICAPDSIPEAPARLRAFLDAGYHGEMAWLADRPERRSDPRVMWSEVQSVILLGFNYGPDADP FT RAVLTQKDRGAISVYAQGDDYHDVIKARLKQFARWLVATGGGDVKVFIDTAAVMEKPLAQAAGLGWQGRHTNLVSKGRGS FT WMFLGAVFTTLDLPRDAAEGDHCGSCRACLDACPTAAFPAPYQLDARRCISYLTIEHKGPIPREFRARLGNRIYGCDDCL FT AACPWNKFAQAGREAKLAARDALRAPALGELVRLDDPSFRALFTKSPVKRIGRDRFIRNALIAIGNSGDAELAPEAERLL FT ADPSPTIRGAAAWALAQLLPPERVATLKAVHLAAEVDDGVRAEWGGFAAE* " FT gene complement(47716..48828) FT /locus_tag="Rpal_0043" FT /colour=3 FT CDS complement(48873..49565) FT /locus_tag="Rpal_0044" FT /product="Glutathione S-transferase domain" FT /note="PFAM: Glutathione S-transferase domain" FT /note="SPTR: Putative Glutathione S-transferase family FT protein - Bradyrhizobium sp. (strain BTAi1 / ATCC FT BAA-1182)" FT /note="KEGG: bbt:BBta_0222 putative glutathione FT S-transferase family protein " FT /note="COGs: COG0625 Glutathione S-transferase category=O" FT /note="InterPro IPR004045:IPR004046" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MYTLFHHPFCPLSRFIRLALGEHGLDLRLVEERSWERRTAFLALNPAGTTPVLVAEGRPPIPGAGVIVEFLDEVHGVEMG FT DRRLLPQSTAERIEVRRLLSWFNDKFFEEASGPLMTERIYKRFMSEEDGGGPPAMDVIRAANANVRYHLAYIGWLARTRN FT FLAGDRMTYADLAAAAHLSAIDYLGDVPWIEDEAAKAWYARIKSRPSFRPLLSEWLAGVPASRTYVDLDF* FT " FT gene complement(48873..49565) FT /locus_tag="Rpal_0044" FT /colour=9 FT CDS 49765..50571 FT /locus_tag="Rpal_0045" FT /product="undecaprenol kinase" FT /EC_number="3.6.1.27" FT /note="TIGRFAM: undecaprenol kinase" FT /note="PRIAM: Undecaprenyl-diphosphatase" FT /note="PFAM: Bacitracin resistance protein BacA" FT /note="SPTR: Q89WH1 Undecaprenyl-diphosphatase (EC FT 3.6.1.27) (Undecaprenyl pyrophosphate phosphatase) FT (Bacitracin resistance protein). Bradyrhizobium FT japonicum." FT /note="KEGG: bja:blr0716 undecaprenyl pyrophosphate FT phosphatase " FT /note="COGs: COG1968 Uncharacterized bacitracin resistance FT protein category=V" FT /note="InterPro IPR003824" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MLIDIIRAVILGIVEGVTEFLPVSSTGHLLLAERFFNLGEGNFWKSFAVLIQLGAILAILALYFVKLWRIALGMFTDANA FT RRFVIGVLVAFLPAAVIGAAFGGYIKHYLFNPWVVCFSLIVGGAILLWVDQLDLKPRYHDATAFPLLTYFYIGCAQCTAM FT IPGVSRSGASIVAAMLLGTDKRSAAEFSFFLAIPTMLGAFVYDLYKNHADMTADNLIIVAIGFVVSFITAIIVVKTFLTY FT VTRHGFELFAWWRVIVGTLGLIALALGL* " FT gene 49765..50571 FT /locus_tag="Rpal_0045" FT /colour=9 FT misc_feature order(49906..49974,50011..50079,50092..50151,50188..50256,50314..50370,50407..50466,50509..50565) FT /colour=11 FT /locus_tag="Rpal_0045" FT /note="7 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(50621..51586) FT /locus_tag="Rpal_0046" FT /product="NADH dehydrogenase (ubiquinone)" FT /EC_number="1.6.5.3" FT /note="PRIAM: NADH dehydrogenase (ubiquinone)" FT /note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta FT hydroxysteroid dehydrogenase/isomerase; FT dTDP-4-dehydrorhamnose reductase; NmrA family protein; FT Male sterility domain" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0128 conserved hypothetical protein; FT putative NAD dependent epimerase/dehydratase family FT protein " FT /note="COGs: COG0702 nucleoside-diphosphate-sugar FT epimerase category=M" FT /note="InterPro FT IPR001509:IPR002225:IPR005913:IPR008030:IPR013120" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTSNIDTLVTVFGGSGFLGRHVVSALARRDYRIRVAVRRPELAGHLQPLGRVGQIHAVQANLRYPESVAAAMRGSHVAIN FT LVGILAEGGAQKFDAVQGSGAATVAQAAASVGARMVHISAIGADANSPARYARSKAAGEQAVLAAVPQATIFRPSVVFGP FT EDQFTNRFAMLARMSPVLPLVGADTKLQPVYVGDVATAIADAVDDLAKPGATYELGGPEELTMREIMRIILQTTDRNPLL FT VPLPFGLASLQAMLLQFAPGAFKLTPDQVRMLEVDNVVSEAAKSAGLTLQGLGIQPDSLQAIVPSYLWRFRKTGQFARKT FT A* " FT gene complement(50621..51586) FT /locus_tag="Rpal_0046" FT /colour=9 FT tRNA 51747..51831 FT /locus_tag="Rpal_R0001" FT /gene="tRNA-Leu1" FT /note="anticodon CAG, Cove Score=71.88" FT /product="tRNA_Leu" FT /colour=8 FT CDS 52000..52614 FT /locus_tag="Rpal_0047" FT /product="3'-5' exonuclease" FT /note="PFAM: 3'-5' exonuclease" FT /note="SPTR: 3'-5' exonuclease - Nitrobacter sp. Nb-311A" FT /note="KEGG: bja:blr0719 hypothetical protein " FT /note="COGs: COG0349 Ribonuclease D category=J" FT /note="InterPro IPR002562" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTIRLHRGDLPDLSRYTNSVAIDTETMGLHPHRDRLCVVQLSNGDGSADVVQIPQGATDAPNLKKLLGDPAVVKIFHFAR FT FDLAALYKAFGVMPQPVYCTKIASRLTRTYTDRHGLKDLVRELLGIDLSKQQQSSDWGADSLSDAQLAYAASDVLHLHAL FT RDKLDTMLARENRTDLAAACFGFLPIRARLDLDGWSEEDIFAHS* " FT gene 52000..52614 FT /locus_tag="Rpal_0047" FT /colour=7 FT CDS 52844..53584 FT /locus_tag="Rpal_0048" FT /product="protein of unknown function DUF1239" FT /note="PFAM: protein of unknown function DUF1239" FT /note="SPTR: Blr0720 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0720 hypothetical protein " FT /note="COGs: COG5375 conserved hypothetical protein FT category=S" FT /note="InterPro IPR010664" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VTAVQLSSYQTGMEARFAAAARHSRLVRTLRLAVPLVVVLSMAVIIAISIFNPFRYLSKLPIDVGDLVVSGTKITMESPH FT LAGFTNDGRPYEMWARTATQDLTSQDHVDLHTLRAKVQSEDQSTVIIESREGQFETKAQLLKLNKDVYLHNSTGTEAWMT FT QADIDMGKGTVTSDSPVDVKWDGGTLRGQRMRITEKGDLIRFEGGVVMNIDNASLGEPPPAAQPAPPPAPTKPRAAPNSG FT QRAVAR* " FT gene 52844..53584 FT /locus_tag="Rpal_0048" FT /colour=13 FT misc_feature 52937..53005 FT /colour=11 FT /locus_tag="Rpal_0048" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 53593..54258 FT /locus_tag="Rpal_0049" FT /product="OstA family protein" FT /note="PFAM: OstA family protein" FT /note="SPTR: OstA-like protein precursor - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0177 OstA-like protein " FT /note="COGs: COG1934 conserved hypothetical protein FT category=S" FT /note="InterPro IPR005653" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPIAVWFRRLRGPVALASAALVALYVGGTVPATAQSAVQGVPNAMQGFSQNRDKPIQIESDTLEVRDKNKEATFTGNVKV FT VQGDTTMTSQTLVVFYDQDQAPAKGAKGKPMPAAAPGPDGASSIRRLEAKGHVVVTQKDQVVTGDKAVFETKTNLVTMTG FT NVVLTQARNVVRGDRLLVDMTTGVSRVESDSGRVQGLFQSSGANGGGPLPLGPPTSSGKPK* FT " FT sig_peptide 53593..53697 FT /colour=11 FT /locus_tag="Rpal_0049" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.877 at FT residue 35" FT gene 53593..54258 FT /locus_tag="Rpal_0049" FT /colour=13 FT CDS 54394..55344 FT /locus_tag="Rpal_0050" FT /product="ABC transporter related" FT /note="PFAM: ABC transporter related" FT /note="SMART: AAA ATPase" FT /note="SPTR: ABC transporter, ATPase subunit - Nitrobacter FT winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_0174 ABC transporter, ATPase subunit FT " FT /note="COGs: COG1137 ABC-type (unclassified) transport FT system ATPase component category=R" FT /note="InterPro IPR003439:IPR003593" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MFRRRGPKAPGFGGARNDITGYGNEVGDLLTTPVRDAPPIARSDAYATPQRQPAAAAPPRRAAAAAQSAAPQAVPASSYL FT AVHSVEKSFGTRKIVRGVSIYVRRGEAVGLLGPNGAGKTTVFYMITGLIKADNGAIELDGHDVTKLPMYQRARLGIGYLP FT QEASIFRGLTVEQNIRAVLEAVEPDKRKREAQLDNLLQEFNIERLRKSPSIALSGGERRRVEIARALASRPNYMLLDEPF FT AGIDPIAVGDIQDLVRHLTNRGIGVLITDHNVRETLGLTDRAYIVYAGEILTEGTPEEIVNDPDVRRLYLGEEFRL* FT " FT gene 54394..55344 FT /locus_tag="Rpal_0050" FT /colour=11 FT CDS 55375..55515 FT /locus_tag="Rpal_0051" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MITVAGLVVRRDQHYRDTAKTSRPKGVRLYSKFPIRQGVYNRSGKA*" FT gene 55375..55515 FT /locus_tag="Rpal_0051" FT /colour=13 FT CDS 55551..57197 FT /locus_tag="Rpal_0052" FT /product="RNA polymerase, sigma 54 subunit, RpoN" FT /note="TIGRFAM: RNA polymerase sigma-54 factor, RpoN" FT /note="PFAM: sigma-54 factor; sigma-54 factor core-binding FT region; sigma-54 DNA-binding domain protein" FT /note="SPTR: RNA polymerase sigma-54 factor - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0121 RNA polymerase factor sigma-54 FT " FT /note="COGs: COG1508 DNA-directed RNA polymerase FT specialized sigma subunit sigma54 homolog category=K" FT /note="InterPro IPR000394:IPR007046:IPR007634" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MALSQRLEFRQTQSLVMTPQLMQAIKLLQLSNLDLAAFVEDEIEKNPLLDRAGDNAEPPVAGEASAEGAEGGGEFGGSGG FT EDLGGEGTSDFVDPAGASAFEPGTEEWMHRDLGSRSDIEQTLDTGMENVFPEEPAEAAARAAQDAAPASYTEWGGGASSD FT EGYNLEAFVAAESSLADHLAEQLAVAVTTPSQRLIGQYLIDLVDDAGYLPADLGDAAERLGASQAEVEALVQVLQTFDPP FT GICARNLSECLAIQLRERDRYDPAMQALVEHLDLLAKRDVASLRKICGVDDEDLVDMIGEIRHLDPKPGLKFGSSRVQTV FT VPDVFVRPGPDGGWLVELNSDTLPKVLVNQSYYSELSKTIRKDGDKSYFSDCLQNATWLVRALDQRARTILKVATEIVRQ FT QDGFFTHGVKHLRPLNLKAVADAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHQIRQLID FT SEDPSAILSDDTIVERLREAGIDIARRTVAKYREAMRIPSSVQRRRDKQNMLGTQAGSASRSRDTAPA* FT " FT gene 55551..57197 FT /locus_tag="Rpal_0052" FT /colour=6 FT CDS 57255..57860 FT /locus_tag="Rpal_0053" FT /product="sigma 54 modulation protein/ribosomal protein FT S30EA" FT /note="TIGRFAM: ribosomal subunit interface protein" FT /note="PFAM: sigma 54 modulation protein/ribosomal protein FT S30EA" FT /note="SPTR: Sigma 54 modulation protein/ribosomal protein FT S30EA - Nitrobacter sp. Nb-311A" FT /note="KEGG: bbt:BBta_0120 putative sigma (54) modulation FT protein " FT /note="COGs: COG1544 Ribosome-associated protein Y FT (PSrp-1) category=J" FT /note="InterPro IPR003489" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTIRISGKSISIGEALRSRVSERTEEVLRKYFDGNYSGHFTLSKDGFGFRTDCALHLDSGITLEAESNAADAYVSADQAL FT VQIEKRLRRYKSRLKDRSSRKAHAEANVLAELSTPVDAASYVIEAPGDEEHHEDAYNPVIIAEATTAMKRLSVSEAVVEL FT DLTGAPVVVFLHGSSGRVNIIYRRADGNIGWIDPPVLNGAN* " FT gene 57255..57860 FT /locus_tag="Rpal_0053" FT /colour=7 FT CDS 58136..58597 FT /locus_tag="Rpal_0054" FT /product="PTS IIA-like nitrogen-regulatory protein PtsN" FT /note="TIGRFAM: PTS IIA-like nitrogen-regulatory protein FT PtsN" FT /note="PFAM: phosphoenolpyruvate-dependent sugar FT phosphotransferase system EIIA 2" FT /note="SPTR: Nitrogen regulatory protein - Bradyrhizobium FT sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0111 nitrogen regulatory protein " FT /note="COGs: COG1762 Phosphotransferase system FT mannitol/fructose-specific IIA domain (Ntr-type) FT category=G" FT /note="InterPro IPR002178:IPR006320" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MTITDLVAPEAVIPALKVISKKQALQELAARAAELTGQNERTIFEVLLQREKLGTTAVGYGVAIPHGKLPKLEKLFGLFA FT RLERPIDFEAMDGQPVDLIFLLLAPEGAGADHLKALARIARLLRDQDVAKKLRASRDAHAIYSVLALPPATAA* FT " FT gene 58136..58597 FT /locus_tag="Rpal_0054" FT /colour=4 FT CDS complement(59203..59469) FT /locus_tag="Rpal_0055" FT /product="protein of unknown function DUF1150" FT /note="PFAM: protein of unknown function DUF1150" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0116 hypothetical protein " FT /note="COGs: COG5568 Uncharacterized small protein FT category=S" FT /note="InterPro IPR009531" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTEAGTTHGNVGVTPEALAHLGEGHIAYVKQIRSEDVPGLFPQAPEIAPGLKLFALHSADGTPIMLTDSREAAIANAWSQELQAVSVH*" FT gene complement(59203..59469) FT /locus_tag="Rpal_0055" FT /colour=13 FT CDS complement(59520..59945) FT /locus_tag="Rpal_0056" FT /product="heat shock protein Hsp20" FT /note="PFAM: heat shock protein Hsp20" FT /note="SPTR: Small heat shock protein - Bradyrhizobium FT japonicum" FT /note="KEGG: bja:bll0729 small heat shock protein " FT /note="COGs: COG0071 Molecular chaperone (small heat shock FT protein) category=O" FT /note="InterPro IPR002068" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSRVPSLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCERSNGDPEKLRITLAVAGFTRDQLDVTVEENQLVIRGRQQ FT DDKTRQYIHRGIAARHFQRTFVLADGMQVLGADLKNGLLSIDLIRPEPERVIKTIAITEHE* FT " FT gene complement(59520..59945) FT /locus_tag="Rpal_0056" FT /colour=9 FT CDS complement(60099..61190) FT /locus_tag="Rpal_0057" FT /product="ABC transporter related" FT /note="PFAM: ABC transporter related; Transport-associated FT OB domain protein" FT /note="SMART: AAA ATPase" FT /note="SPTR: Q89WG0 sn-glycerol-3-phosphate import FT ATP-binding protein ugpC (EC 3.6.3.20). Bradyrhizobium FT japonicum." FT /note="KEGG: bja:bll0730 glycerol-3-phosphate ABC FT transporter ATP-binding protein " FT /note="COGs: COG3839 ABC-type sugar transport systems FT ATPase components category=G" FT /note="InterPro IPR003439:IPR003593:IPR013611" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="VADVVLRNVRKTYPGGFEAIKGVDFAVGDGQFCVLVGPSGCGKSTLLRMVAGLETITAGEIEIGGRVVNDVEPADRDIAM FT VFQNYALYPHMTVYNNMAYGLRNRGMAKAEIDARVQEAARILELGPMLTRKPRQLSGGQRQRVAMGRAIVRHPKVFLFDE FT PLSNLDAKLRVAMRVEIRKLQRRLATTAIYVTHDQLEAMTLADVLVVMNGGQVEQIGSPLDVYAKPATTFVASFIGAPPM FT NLLTLADDLRNELGGTPAEAGILGVRPEDLVIGPGAAAQGGLALDITVEAIERVGPETFVYGVRAGHEARPVVAGKPGEG FT AGGDVIVRIPGQAAPPVGERITVAAAPHSLHLFSADGRRRIAG* " FT gene complement(60099..61190) FT /locus_tag="Rpal_0057" FT /colour=4 FT CDS complement(61193..62041) FT /locus_tag="Rpal_0058" FT /product="binding-protein-dependent transport systems FT inner membrane component" FT /note="PFAM: binding-protein-dependent transport systems FT inner membrane component" FT /note="SPTR: Glycerol-3-phosphate ABC transporter membrane FT spanning protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0731 glycerol-3-phosphate ABC FT transporter membrane spanning protein " FT /note="COGs: COG0395 ABC-type sugar transport system FT permease component category=G" FT /note="InterPro IPR000515" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MVERRKFGNLVPHLILWIGVAIVAFPVYLAFVASTQDNATIANGQMSLLPGSHFLETYYKTIFVGSSGTTREPVASMLFN FT SFVMAMSIALGKIAISIISAYAIVYFRFPFRMTIFWIIFITLMLPVEVRIYPTYKIAADLNLLDSYAGLALPLIASATAT FT LLFRQFFMTVPDELLEASRIDGAGPLRFFWDTLLPLSRTNMAALFVILFILGWNQYLWPLLITTRDDMQTIQIGIRKMIV FT TSDALTEWPIVMATAVLAMLPPVAVVVLMQKLFVRGLVETEK* " FT gene complement(61193..62041) FT /locus_tag="Rpal_0058" FT /colour=4 FT misc_feature complement(order(61244..61309,61373..61438,61541..61606,61646..61702,61733..61798,61946..62011)) FT /colour=11 FT /locus_tag="Rpal_0058" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(62041..62922) FT /locus_tag="Rpal_0059" FT /product="binding-protein-dependent transport systems FT inner membrane component" FT /note="PFAM: binding-protein-dependent transport systems FT inner membrane component" FT /note="SPTR: Glycerol-3-phosphate ABC transporter permease FT protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0732 glycerol-3-phosphate ABC FT transporter permease protein " FT /note="COGs: COG1175 ABC-type sugar transport systems FT permease components category=G" FT /note="InterPro IPR000169:IPR000515" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MLKHAVFQSKFLPYLLVLPQLVVVLVFFYWPAVQAVIQSFLLQDAFGLSTVFVWFDNYRELLEQPDYFDAIIRTFVFSFA FT IALSSLSLALLLAVMADRPLRGSTFYRTMLIWPYAVAPPVVGVLWVFMLNPSLGVIAHGLRALGVDWNPLLDGDQAALLI FT VLAAAWKQISYNFLFFLAGLQAIPSSVIEAAAIDGARPMRRFWTIIFPLLSPTIFFLMIVNVVYAFFDTFGIIDTMTRGG FT PAKATETLVYKVYQDGLLGSNLGSSAAQSVILMAIVIALTAIQFRFVERKVNY* " FT gene complement(62041..62922) FT /locus_tag="Rpal_0059" FT /colour=4 FT misc_feature complement(order(62062..62127,62242..62307,62389..62454,62515..62580,62644..62709,62821..62886)) FT /colour=11 FT /locus_tag="Rpal_0059" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(63087..64415) FT /locus_tag="Rpal_0060" FT /product="extracellular solute-binding protein family 1" FT /note="PFAM: extracellular solute-binding protein family FT 1" FT /note="SPTR: ABC transporter glycerol-3-phosphate-binding FT protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0733 ABC transporter FT glycerol-3-phosphate-binding protein " FT /note="COGs: COG1653 ABC-type sugar transport system FT periplasmic component category=G" FT /note="InterPro IPR006059" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MAFRSFGLTAAAATAIAATLAMAAPAYAVTEIQWWHAMTGGNNDVIVKLANEFNAAQGDYKVVPTYKGGYADTMNAGIAA FT FRAGNAPHILQVFEVGTATMMAATGAVKPVYKLMQETGEPFDPKAYLPAITGYYSTSKGEMLSFPFNSSSMVMWVNLDAL FT KKADIAEIPKTWPEVFEDAKKLKAAGYATCGFSTAWVTWANLEQLSAWHNVPLASKANGLDGFDTKLEFNGPVQVKHLQK FT LIELQKDKTYDYSGRTNTGEGRFTSGECPLFLTSSGFFGNVKSQAKFNWTNAPMPYYPDVKGAPQNSIIGGASLWVMGGK FT NAAEYKGVAKFLAFLSDTDRQVAIHKASGYLPITKAAYEKAKADGFYKEQPYLETPIKELTNKPPTENSRGLRLGNMVQL FT RDVWAEEIEQALAGKKTAQEALDAAVTRGNTMLRQFEKTAVK* " FT gene complement(63087..64415) FT /locus_tag="Rpal_0060" FT /colour=4 FT misc_feature complement(64329..64394) FT /colour=11 FT /locus_tag="Rpal_0060" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(64329..64415) FT /colour=11 FT /locus_tag="Rpal_0060" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.669 at FT residue 29" FT CDS complement(64647..65852) FT /locus_tag="Rpal_0061" FT /product="L-carnitine dehydratase/bile acid-inducible FT protein F" FT /note="PFAM: L-carnitine dehydratase/bile acid-inducible FT protein F" FT /note="SPTR: Bll0734 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0734 hypothetical protein " FT /note="COGs: COG1804 acyl-CoA transferase/carnitine FT dehydratase category=C" FT /note="InterPro IPR003673" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MTSASMPGAIAGLRVIDLTRVLGGPYCTQILADHGANVIKVEPPAGDEVRDWGPPFHDEDAAYFLGVNRNKRSIGLDLAS FT PGGREVLLKMLEDADVLIENFKPGTLDKWGLSNEVIREKFPRLVHCRISGFGADGPRGGNPGYDAIIQAMTGMIAATGSP FT ETGPVRIGVPLVDITTGLYATIGILMALAERERSGKGQFVETTLYETGLAIMHPHTANYFLHGKPPALTGNEHPNLVPYS FT TFNARDGQIFTGVGNDGTFRKLCKEIGKPELGTDPRFARNKDRIANRAALRAELEAVFSQHDAVPLCDRLLNAGLPAGPV FT QTIDKALTSPHTAYRGDVIEKDWYKGVASPIRFERTKASLRGLPPKFSQHASEVLGEFGYSADDISKLVADGIVSGPERK FT R* " FT gene complement(64647..65852) FT /locus_tag="Rpal_0061" FT /colour=3 FT CDS complement(65898..66134) FT /locus_tag="Rpal_0062" FT /product="Excinuclease ABC C subunit domain protein" FT /note="PFAM: Excinuclease ABC C subunit domain protein" FT /note="SPTR: Putative uncharacterized protein - Rhizobium FT leguminosarum bv. viciae (strain 3841)" FT /note="KEGG: rle:RL0110 hypothetical protein " FT /note="InterPro IPR000305" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKYVYILQSEIDEHFYVGITDNLPARIGKHNAGEVPHTSKFRPWKLKTYVAFSNTRQAVAFEKYLKSASGRAFAKKRL*" FT gene complement(65898..66134) FT /locus_tag="Rpal_0062" FT /colour=13 FT tRNA complement(66535..66610) FT /locus_tag="Rpal_R0002" FT /gene="tRNA-Ala4" FT /note="anticodon GGC, Cove Score=87.23" FT /product="tRNA_Ala" FT /colour=8 FT CDS complement(66681..67082) FT /locus_tag="Rpal_0063" FT /product="conserved hypothetical protein" FT /note="PFAM: conserved hypothetical protein" FT /note="SPTR: Bll0737 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0737 hypothetical protein " FT /note="InterPro IPR012644" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VAKSDLGTKRICPTTGKKFYDLNKNPVISPYTGEVVPIAPVTAPRTRADQRSPVVDTEAPEAMEAEELVSLEEADAEENT FT GKVKAVVPESEDDIEIDEAIDDDDDDSTFIADEEEEDEDVTDIIGDVSGDEET* " FT gene complement(66681..67082) FT /locus_tag="Rpal_0063" FT /colour=13 FT CDS 67223..68560 FT /locus_tag="Rpal_0064" FT /product="3-phosphoshikimate 1-carboxyvinyltransferase" FT /note="TIGRFAM: 3-phosphoshikimate FT 1-carboxyvinyltransferase" FT /note="PFAM: EPSP synthase (3-phosphoshikimate FT 1-carboxyvinyltransferase)" FT /note="SPTR: A4YJJ3 3-phosphoshikimate FT 1-carboxyvinyltransferase (EC 2.5.1.19) (5- FT enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) FT (EPSPS). Bradyrhizobium sp. (strain ORS278)." FT /note="KEGG: bra:BRADO0098 3-phosphoshikimate FT 1-carboxyvinyltransferase " FT /note="COGs: COG0128 5-enolpyruvylshikimate-3-phosphate FT synthase category=E" FT /note="InterPro IPR001986:IPR006264" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="LTDSNQPTPLQARKSGALHGTARVPGDKSISHRALILGALAVGETRISGLLEGEDVINTAKAMRALGAKVERTGDCEWRV FT HGVGVAGFATPEAPLDFGNSGTGCRLAMGAVAGSPIVATFDGDASLRSRPMRRIVDPLELMGAKVVSSSEGGRLPLALQG FT ARDPLPILYRTPVPSAQIKSAVLLAGLSAPGVTTVIEAEASRDHTELMLQHFGATIVTEAEGAHGRKISLTGQPELRGAP FT VVVPADPSSAAFPMVAALVVPGSDIELTDVMTNPLRTGLITTLREMGALIEDSDVRGDAGEPMARFRVRGSKLKGVEVPP FT ERAPSMIDEYLVLAVAAAFAEGTTVMRGLHELRVKESDRLEATAAMLRVNGVAVEIAGDDLIVEGKGHVPGGGVVATHMD FT HRIAMSALAMGLASDKPVTVDDTAFIATSFPDFVPMMQRLGAEFG* " FT gene 67223..68560 FT /locus_tag="Rpal_0064" FT /colour=10 FT CDS complement(68564..69238) FT /locus_tag="Rpal_0065" FT /product="protein of unknown function DUF374" FT /note="PFAM: protein of unknown function DUF374" FT /note="SPTR: Putative uncharacterized protein - FT Magnetospirillum gryphiswaldense" FT /note="KEGG: mag:amb4091 hypothetical protein " FT /note="COGs: COG2121 conserved hypothetical protein FT category=S" FT /note="InterPro IPR007172" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MATPAFVKRITRSDAVLSLGVNFSKIYFKFVMWTGRYDRQAVPIPEPYILAMWHGRLIMAPMLQTKSKPLVALISGHRDG FT KIISRVGAAFGIQTAVGSSSKGGMRAAREMMRLGKSGHSLFVTPDGPRGPRMRINSEGVLDLARLTGLPILPVSVSLSRH FT KLLRSWDRLMLPGLFAKVAIRFGEPITVEAGSPTAEMAERLQAALTAAQNETDRIVGLQPVEVA* FT " FT gene complement(68564..69238) FT /locus_tag="Rpal_0065" FT /colour=13 FT CDS 69403..70041 FT /locus_tag="Rpal_0066" FT /product="cytidylate kinase" FT /EC_number="2.7.4.14" FT /note="TIGRFAM: cytidylate kinase" FT /note="PRIAM: Cytidylate kinase" FT /note="PFAM: cytidylate kinase region" FT /note="SPTR: Cytidylate kinase - Bradyrhizobium sp. FT (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0104 cytidylate kinase " FT /note="COGs: COG0283 Cytidylate kinase category=F" FT /note="InterPro IPR002110:IPR003136:IPR011769:IPR011994" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MIIAIDGPAASGKGTLAKRLAAHYGFRHLDTGVIYRAVAKAMLDAGADLTDEARAAEVARTLDPSRFDDPALKSHAVGEA FT ASVVSAHPQVRAALVEFQKTFAAAPPGAVLDGRDIGTVICPDAEVKIFVVASPEVRAHRRFLEAQSRGEPADEAVILSDI FT VKRDERDKNRSAAPLKQAPDAVLLDNSYLDIEGGVRAAIDIVEAVRAGRRRV* " FT gene 69403..70041 FT /locus_tag="Rpal_0066" FT /colour=16 FT CDS 70342..72039 FT /locus_tag="Rpal_0067" FT /product="ribosomal protein S1" FT /note="TIGRFAM: ribosomal protein S1" FT /note="PFAM: RNA binding S1 domain protein" FT /note="SPTR: SSU ribosomal protein S1P - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0163 30S ribosomal protein S1 " FT /note="COGs: COG0539 Ribosomal protein S1 category=J" FT /note="InterPro IPR000110:IPR003029" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MASTDTYNPTRDDFAAMLDESFAGGNLQESSVIKGKVVAIEKDMAVIDVGLKTEGRVPLREFAGPGRDNEIKVGDTVEVF FT LDRIENALGEAVLSRDKARREESWGKLEKAFQNNEKVFGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRDVAPLMNNS FT QPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHP FT TEVLTIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMSW FT TKKNMHPGKIVSTSQEVEVQVLEVDSVKRRISLGLKQTMRNPWEVFVEKHPVGSTVEGEVKNKTEFGLFLGLDGDVDGMV FT HLSDLDWKLPGEQVIDNFKKGDMVKAVVLDVDVEKERISLGVKQLEGDPFAEPGDVKKGAVVTCEVLDVKESGIDVQIVG FT TDFNTFIKRSELARDRNDQRSDRFAVGEKVDARVIQFDKKARKVQVSIKALEVAEEKEAIAQYGSSDSGATLGDILGTAL FT KQRDK* " FT gene 70342..72039 FT /locus_tag="Rpal_0067" FT /colour=7 FT CDS 72268..73248 FT /locus_tag="Rpal_0068" FT /product="signal peptide peptidase SppA, 36K type" FT /note="TIGRFAM: signal peptide peptidase SppA, 36K type" FT /note="PFAM: peptidase S49" FT /note="SPTR: Putative peptidase S49 family; putative FT signal peptide peptidase SppA - Bradyrhizobium sp. (strain FT ORS278)" FT /note="KEGG: bra:BRADO0095 putative peptidase S49 family; FT putative signal peptide peptidase SppA " FT /note="COGs: COG0616 Periplasmic serine protease (ClpP FT class) category=O" FT /note="InterPro IPR002142:IPR004635" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSLDSDVIVDRRRMRRKLTFWRVAAVLVAIVAVVAIGAMVSPAGRGALTSTGSIARIKIEGLIRSNDERVQALDRLGKSS FT YSAVIVHINSPGGTTAGSEELHDALARLKAKKPMVVVVEGLAASGGYIAALASEHIVAQQTSLVGSIGVLFQYPNVSELL FT KTVGVKVEEVKSSPLKAAPNGFEPTSPEARAAIEALVKDSYAWFRGMVQQSRKMTDDQLNVVADGRVFTGRQAVGLKLID FT ELGDERTAIAWLEKAKNVKAGLPVRDYKLAPQFGDLTFLRAAASVAFDAAGLGVIARRVEQTGAMQSVERLGLDGMLALW FT APSAGQ* " FT sig_peptide 72268..72390 FT /colour=11 FT /locus_tag="Rpal_0068" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.855) with cleavage site probability 0.337 at FT residue 41" FT gene 72268..73248 FT /locus_tag="Rpal_0068" FT /colour=9 FT misc_feature 72325..72393 FT /colour=11 FT /locus_tag="Rpal_0068" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 73414..73728 FT /locus_tag="Rpal_0069" FT /product="integration host factor, beta subunit" FT /note="TIGRFAM: integration host factor, beta subunit" FT /note="PFAM: histone family protein DNA-binding protein" FT /note="SPTR: A4YJI9 Integration host factor subunit beta FT (IHF-beta). Bradyrhizobium sp. (strain ORS278)." FT /note="KEGG: bra:BRADO0094 integration host factor subunit FT beta " FT /note="COGs: COG0776 Bacterial nucleoid DNA-binding FT protein category=L" FT /note="InterPro IPR000119:IPR005685" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARAGRNPRTGAHVPVDQKTVPFF FT KTGKEMRERLNRDSGDDAPTSDTA* " FT gene 73414..73728 FT /locus_tag="Rpal_0069" FT /colour=2 FT CDS 73766..74152 FT /locus_tag="Rpal_0070" FT /product="conserved hypothetical protein" FT /note="SPTR: Blr0743 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0743 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MQKFLTALVLIPLGLILVVFAVANRHMVDVSFDPLDPTNPLGHIRLPLFVVIIVTAIIGVILGGIATWFGQRRWRRAARR FT HQAEAIEAQNQLASLRASIATPAQSEPRRLLLESGSSGAGRDKSRATL* " FT sig_peptide 73766..73831 FT /colour=11 FT /locus_tag="Rpal_0070" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.996) with cleavage site probability 0.956 at FT residue 22" FT gene 73766..74152 FT /locus_tag="Rpal_0070" FT /colour=13 FT misc_feature order(73784..73849,73907..73975) FT /colour=11 FT /locus_tag="Rpal_0070" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 74211..74852 FT /locus_tag="Rpal_0071" FT /product="Phosphoribosylanthranilate isomerase" FT /EC_number="5.3.1.24" FT /note="PRIAM: Phosphoribosylanthranilate isomerase" FT /note="PFAM: N-(5'phosphoribosyl)anthranilate isomerase FT (PRAI)" FT /note="SPTR: Q89WE6 N-(5'-phosphoribosyl)anthranilate FT isomerase (EC 5.3.1.24) (PRAI). Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0744 N-(5'-phosphoribosyl)anthranilate FT isomerase " FT /note="COGs: COG0135 Phosphoribosylanthranilate isomerase FT category=E" FT /note="InterPro IPR001240" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSTIVKICGLTTADTLEAAVETGADMVGFVFFPASPRHLDIDFADALGRQVRSRAAKVALTVDADDDLLDAIVEQLRPNW FT LQFHGSESPERVRSIKRIYGLPVMKAIAVAGPEDLSVLPDYAAVADRILFDARPPKDATRPGGLGAAFDWKLLDGVNLKL FT PFLVSGGINAGNVAEALRVTRAQGVDVSSGVETSPGEKDPDLIRDFIRAARAA* " FT gene 74211..74852 FT /locus_tag="Rpal_0071" FT /colour=10 FT CDS 74866..76080 FT /locus_tag="Rpal_0072" FT /product="tryptophan synthase, beta subunit" FT /EC_number="4.2.1.20" FT /note="TIGRFAM: tryptophan synthase, beta subunit" FT /note="PRIAM: Tryptophan synthase" FT /note="PFAM: Pyridoxal-5'-phosphate-dependent protein beta FT subunit" FT /note="SPTR: Q89WE5 Tryptophan synthase beta chain (EC FT 4.2.1.20). Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0745 tryptophan synthase subunit beta FT " FT /note="COGs: COG0133 Tryptophan synthase beta chain FT category=E" FT /note="InterPro IPR001926:IPR006653:IPR006654" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MNQALPNSFRSGPDERGHFGIYGGRFVAETLMPLILDLEKAYAEAKADPAFRAEMDNHLKHYVGRPSALYFAERLTEHFG FT GAKIYFKREDLNHTGAHKVNNVLGQIMLAKRMGKPRVIAETGAGMHGVATATMCAKFGLECVVFMGAVDVERQQPNVLRM FT KALGAEVRPVTSGANTLKDAMNEALRDWVTNVHDTFYCIGTVAGPHPYPMMVRDFQAVIGQEVREQIMQAEGRLPDSLVA FT CIGGGSNAMGLFHPFLDDPGVAIYGVEAAGHGLDKLHAASIAGGKPGVLHGNRTYLLMDADGQIEEAHSISAGLDYPGVG FT PEHSWLHDVGRVNFLSATDTEALDAFKLCCRLEGIIPALEPSHALAKVADLAPKLPKDHLMVVNMSGRGDKDLASVAEHL FT GGKF* " FT gene 74866..76080 FT /locus_tag="Rpal_0072" FT /colour=10 FT CDS 76080..76916 FT /locus_tag="Rpal_0073" FT /product="tryptophan synthase, alpha subunit" FT /EC_number="4.2.1.20" FT /note="TIGRFAM: tryptophan synthase, alpha subunit" FT /note="PRIAM: Tryptophan synthase" FT /note="PFAM: tryptophan synthase alpha chain" FT /note="SPTR: Q89WE4 Tryptophan synthase alpha chain (EC FT 4.2.1.20). Bradyrhizobium japonicum." FT /note="KEGG: bbt:BBta_0096 tryptophan synthase subunit FT alpha " FT /note="COGs: COG0159 Tryptophan synthase alpha chain FT category=E" FT /note="InterPro IPR002028" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MTTRIDTRFADLKQQGRPALVTFVMAGDPDLDTSLQILKALPAAGADVIEIGMPFTDPMADGPAIQAAGLRALKAGTTLK FT KTLGLVRDFRATDNATPLVLMGYYNPIYIYGVDAFLADAKAAGVDGLIIVDLPPEEDEELCLPAMKAGLNFIRLATPTTD FT EKRLPAVLANTSGFVYYVSITGITGSASADASAVGAAVQRIKRHTNLPVCVGFGIRTPDAAQAIAAQANGAVVGSALIDA FT LKASLDAEGRATKGTVGAVADLVASLAAGVRGAKQAAE* " FT gene 76080..76916 FT /locus_tag="Rpal_0073" FT /colour=10 FT CDS 77026..78009 FT /locus_tag="Rpal_0074" FT /product="acetyl-CoA carboxylase, carboxyl transferase, FT beta subunit" FT /note="TIGRFAM: acetyl-CoA carboxylase, carboxyl FT transferase, beta subunit" FT /note="SPTR: Acetyl-coenzyme A carboxylase carboxyl FT transferase subunit alpha - Nitrobacter hamburgensis FT (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0061 acetyl-CoA carboxylase subunit FT beta " FT /note="COGs: COG0777 Acetyl-CoA carboxylase beta subunit FT category=I" FT /note="InterPro IPR000438:IPR001202:IPR011762" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MNWLTNVVRPKIRNILRRETPENLWIKCPDTGQLVFYKDVEQNQFVIPGSNYHMRMGAVARLRAIFDNETWYDVALPEVV FT ADPLKFRDERKYADRIKDARTKTGAHDAVRVGFGKLETSPVVVAVQDFDFMGGSLGMAAGEAIIRGMELAVEKHAPFIMF FT AASGGARMQEGILSLMQMPRTTVAVQMLREAKLPYIVVLTNPTTGGVTASYAMLGDIHIAEPGALIGFAGARVIEQTIRE FT KLPDGFQRAEYLKEHGMVDMVVHRHDLRPTLARLCRLLTKSPALTVTTAVEAPAEAAAKAEPEATTTEQPVAPAPTEPPA FT QPAAPQA* " FT gene 77026..78009 FT /locus_tag="Rpal_0074" FT /colour=5 FT CDS 78006..79334 FT /locus_tag="Rpal_0075" FT /product="FolC bifunctional protein" FT /EC_number="6.3.2.17" FT /note="TIGRFAM: FolC bifunctional protein" FT /note="PRIAM: Tetrahydrofolate synthase" FT /note="PFAM: cytoplasmic peptidoglycan synthetase domain FT protein; Mur ligase middle domain protein" FT /note="SPTR: FolC bifunctional protein - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0060 FolC bifunctional protein " FT /note="COGs: COG0285 Folylpolyglutamate synthase FT category=H" FT /note="InterPro IPR001645:IPR004101:IPR013221" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="VSEGSAPPAPLGELRSRLTRLHPVAIDLTLGRIERLLAVLGHPERKLPPVIHVAGTNGKGSTVAFLRAILEATGLKVHAY FT TSPHLVRVNETIRIAGRLVGDDELLAALAHCERVNAGAPITLFEIETAAALWLFAQHPADVTLLEVGLGGRLDATNVIEH FT PLACVLTPIGIDHTEFLGPTIADIAAEKAGILRRGAPVIVAEQRDEAMEVIERDAKRLRAPLFACGQQWHVQLEHGRLAY FT QDERGLLDLTAPKLFGRHQIDNAGLAIATLRAQSRFTIPQDAYQAGLLAAEWPARMQRITSGKLLDDAPAGCELWLDGGH FT NADGGRVAAAALGDLEERVSRPLVLIAGMMANKDAAAFLANFTGLTRHLIVVPIPNRDGAMPPERLADAGRALGLRVELA FT DDVRAALRRIASLAYELPPRILITGSLYLAGHVLSLNGTPPN* " FT gene 78006..79334 FT /locus_tag="Rpal_0075" FT /colour=12 FT CDS complement(79508..79828) FT /locus_tag="Rpal_0076" FT /product="thioredoxin" FT /note="TIGRFAM: thioredoxin" FT /note="PFAM: Thioredoxin domain" FT /note="SPTR: Thioredoxin C-1 - Bradyrhizobium japonicum" FT /note="KEGG: bbt:BBta_0091 thioredoxin 1, redox factor " FT /note="COGs: COG3118 Thioredoxin domain-containing protein FT category=O" FT /note="InterPro IPR005746:IPR006662:IPR013766" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MAVGKVSDADFENEVLNAQGPVVVDFWAEWCGPCRMIAPALDEIAGAMGDKVKIVKLNVDESPVTASKYGVMSIPTLMIF FT KGGEMASRQVGAAPKAKLQQWISAAV* " FT gene complement(79508..79828) FT /locus_tag="Rpal_0076" FT /colour=9 FT CDS complement(79925..83410) FT /locus_tag="Rpal_0077" FT /product="double-strand break repair helicase AddA" FT /note="TIGRFAM: double-strand break repair helicase AddA" FT /note="PFAM: UvrD/REP helicase" FT /note="SPTR: Bll0752 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0752 putative helicase 2 " FT /note="COGs: COG1074 ATP-dependent exoDNAse (exonuclease FT V) beta subunit (contains helicase and exonuclease FT domains) category=L" FT /note="InterPro IPR000212:IPR014016:IPR014017:IPR014151" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MSRLIPNEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAANMAERVFTTLGHWVK FT LDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIHALCTRLLQQFPFEANVPARFSVLDDRDQAELMQR FT ASLDVLLRAAAAPDSDAGRALAFAMTSAADVTFRDVVQEACMSRDRFMAWVAQAGSVERAMAQLSATLGVAPGDSCEAAD FT RDIVDGPNLPRSEWAAVAAIFEGGSANDQAQARRLREALALTDAAQIDAYLQVFFTKDSGLRKSLITKKLGDSAPGLAER FT LQREGARLAGLLERRRALALRERTRALLVIAAQVAGNIAREKRERGLLDYDDLIDKTLAMLDSGAAGWVHFKLDRGVDHV FT LIDEAQDTSPKQWKIVARLIDEFTAGEGARDGVRRTIFAVGDEKQSIFSFQGAVPKEFAEWRDLLQRRFTGAGLTFEKVS FT FNYSFRSGAAILQSVDHVFRDPAIYRSIHADSTYPLHQSLADAGPSSIDLWPLEVPDDRQQIEGWQAPFDAVSETSPEVR FT LADKVRAEIGALIARGTQTGPMGRRRPLSYGDVLILVRRRGSAFDAVIQALKRGGIPVAGADRLKLTEHIAIIDLMKLAD FT ALLLPQDDLALAVALKSPLFGLDDDDLFKLAWQRKGSLSAALADHAAGDSKFAAVQRRLESYAARAQAETPFGFYAWLLG FT GDGSDSGRARILRRLGPEANDALDEFLELALSFEQKRAPSLQGFVAWLREADTEIKRDMEISRDEVRVMTVHGAKGLEAP FT VVFLIDTTSSPADTQRLNLIRLPGGNAAPGSVAAMVWAGRKADDPHIVEQARSAMIEETEDEYRRLLYVAMTRAADRLIV FT GGCMPGNRNEVRPHSWYDLISKGLESSGLVMQPVPPEGVIKRYCRPEDVIEEIGTVSQGQELAVTHLPDWLRRPAPGLPS FT AEQVLRPSDAEDDDRRRLRPGESDASRSRALQRGTLVHRLLQSLPEIAVADRPAAAGRFLARNASDWSEEDRAALAAQVL FT GLIADARFAAVFGSGSRAEVPIVGRLQWRGGPVLVSGQIDRLVVTETEVLIVDYKTNHAPPRVEAEAPRSYVRQLARYRA FT VLGAIYPQRTVRAALLWTEAAEIMELSASALDAEQADLTVP* " FT gene complement(79925..83410) FT /locus_tag="Rpal_0077" FT /colour=2 FT CDS complement(83407..86556) FT /locus_tag="Rpal_0078" FT /product="double-strand break repair protein AddB" FT /note="TIGRFAM: double-strand break repair protein AddB" FT /note="SPTR: DNA helicase/exodeoxyribonuclease V, subunit FT B - Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0089 putative helicase-exonuclease FT type V protein family, AddB subunit " FT /note="COGs: COG3893 Inactivated superfamily I helicase FT category=L" FT /note="InterPro IPR014153" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MHLFSVPSSAPFLRTTIAALVDGRLVEGFDVRTAPERLADATLYLPTRRAGRMAREIFLDVLGADAVLLPRIVALGDIDE FT DELAFAQAASGLADLEIPPALDGLPRRLLLTQLIASWAARLKPDDPTQAPLVVGGPASALALADDLARLIDDMSTRGVDW FT SALETLVPDAFDRYWSLTLDFLKIAGHAWPQYLKETDRIEPAARRDRLIDAEAQRLATQRSGPVIAAGSTGSMPATAKLL FT TAIARLPHGAVVLPGLDIDLDDAAWDLIGGSRDRQGKLVTPPSPNHPQYAMHGLLDRMGVTRRDVQQLGTPARHGRELLS FT SEALRPSSATAVWHDRLKDAEVDRLIGEGTDGLTLIEAPNSEAEALAIAVVLREAREQGKTAALVTPDRALARRVVAALG FT RWHLPVDDSGGDSLMETQPGIFARLAAETALDGCEPATLLALLKHPLLRLGRTGYGWRGAIETLELALLRGPRPSAGCDG FT LAKEFAIFRGELAKLKRGEASALHPSEPRTRLSEPSLDEAQDLIAQLKAALAPLETVGPNPLDLCEIGARHCAALKALTT FT DDEGIAEVFEGPQGSALLRAFDDLAAVGPASGVLVAARDYGEVFETAFGDRVVRRPELAEAPIRIYGPLEARLTQQDRVV FT LGGLVEGVWPPAPRIDPWLSRPMRHELGLDLPERRIGLSAHDFAQALGADEVFITHAAKVGGAPAVASRFLHRLEAVAGE FT DRWKAMKARGQIYLDYTHELDRPESVTPIAQPAPRPPRIARPLKLPVTAIEDWLRDPYTIYAKYILRLSPLDPVDMPLSG FT ADRGSAIHAALGEFTERYQDALPDDPVTALRQIGQKHFAPLMDHAEARALWWPRFLRIATWFAAWEQQRRTGVVQVQAER FT RGTLMIPLGGERNFELSARADRIERRDDGSYAILDYKTGHPPTGKQVRMGLSPQLTLEAAILRDGGFEDIPAAASVSELT FT YVKLSGNTPPGDERVLELKIERKDEPQHPDDAADEARAKLEGLVRRFEDEKQSYRSLVLSMWSQRYGTYDDLARIKEWSA FT AGGRGDASS* " FT gene complement(83407..86556) FT /locus_tag="Rpal_0078" FT /colour=2 FT CDS complement(86632..87354) FT /locus_tag="Rpal_0079" FT /product="Nucleotidyl transferase" FT /note="PFAM: Nucleotidyl transferase" FT /note="SPTR: Nucleotidyl transferase - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0056 nucleotidyl transferase " FT /note="COGs: COG1208 Nucleoside-diphosphate-sugar FT pyrophosphorylase involved in lipopolysaccharide FT biosynthesis/translation initiation factor 2B FT gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) FT category=M" FT /note="InterPro IPR005835" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTVRPHKAMVLAAGLGLRMRPLTDHMPKPLVRVAGRPLLDHVLDRLAEVDVTEAVVNVHYLPDQIIDHVAGRTSPRVIIS FT DERDQVLDTGGAVVKALPLLGDAPFYHLNADTMWIDGVRPNLARLAEAFDPARMDILLLMAPTANSIGYAGKGDFAMSPD FT GSLHKRKETEVVPFVYAGAAIMSPAIFKNAPQGEFSLTKMFDRAGQQHRLHGLRLDGLWMHVGTPDAVPAAERAYLASVA FT * " FT gene complement(86632..87354) FT /locus_tag="Rpal_0079" FT /colour=9 FT CDS complement(87512..87820) FT /locus_tag="Rpal_0080" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0087 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MVAERNKDGRVVFDRGLRAQMMAIDGTWRRPCLIEDVSELGAKLTVEGTVEGLNLKEFFLLLSSTGLAYRRCELSWINGD FT QIGVTFLRLDRKKKRAAQAENA* " FT gene complement(87512..87820) FT /locus_tag="Rpal_0080" FT /colour=13 FT CDS complement(87924..89444) FT /locus_tag="Rpal_0081" FT /product="protein of unknown function UPF0079" FT /note="PFAM: aminoglycoside phosphotransferase; protein of FT unknown function UPF0079" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0054 protein of unknown function FT UPF0079 " FT /note="COGs: COG3178 phosphotransferase related to Ser/Thr FT protein kinase category=R" FT /note="InterPro IPR002575:IPR003442" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSAVATFSVALANEVATVRLMAEVALLIGPGDVVTLSGDLGAGKTAAARAMIRYLADDDALEVPSPTFTLVQTYDLPPYP FT LLHADLYRVEDPSELEEIGLSPLPDGTVALIEWPERAGAALPEDRIDIALSHRPALGPSARAAEITGHGKAVKQVERLAA FT LRSFIETAGYADAERRHMPGDASTRSYARLQRGAESVILMNAPRRPDGPALYAGKSYSAAVHLAEDVRPFVAIGQGLRER FT GFSAPAIHHADLDAGFLITEDLGRIGFVEGDPPAPVVARYQAATDMLAALHAKPLPDHLPLSTRESYAVPTFDEAAMMIE FT VGLMPEWYLPDRGAPPSEALRAEFVALWRKLLAGIATAPRTWVLRDYHSPNLIWLEDRPGIERVGVIDFQDTVLGPAAYD FT VVSLLQDARIDVPEATELSLLGRYVKARLAADPEFDAPGFARLYAVMSAQRNTRLLGTFARLNRRDGKPQYLKHQPRVWA FT YLARSLAHPALAEVRAWYRDHVPPPL* " FT gene complement(87924..89444) FT /locus_tag="Rpal_0081" FT /colour=11 FT CDS complement(89441..91954) FT /locus_tag="Rpal_0082" FT /product="PAS/PAC sensor signal transduction histidine FT kinase" FT /note="PFAM: ATP-binding region ATPase domain protein; FT histidine kinase A domain protein" FT /note="SMART: PAS domain containing protein" FT /note="SPTR: Histidine kinase precursor - Nitrobacter FT winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_0045 histidine kinase " FT /note="COGs: COG2205 Osmosensitive K+ channel histidine FT kinase category=T" FT /note="InterPro FT IPR000014:IPR003594:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MSGVLGSIRRTSLSCTSLVHGLAGTAVMVASSPARAADDHLAAITSSLLLDLNRHEMMTLIIALAALGFSVMSAIMLVRT FT RQRAVAREAGLRADLQGLQAESDRFQALLFAEPQVLISWAAGDSRPQVSGDTALFLPLETQSRQPQRVLAFGTWLPPEPA FT LQMDHAVDALLDKGEGFLLQLVTSNGRSIEAMGRAVGGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPW FT PIWTRRSDGTLSFANAAYARATDASDAADAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVVGGERRYYDVRALKVSG FT GSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRKLWDLDRIFLDSHPDDSTVLDRLRAE FT RKLPEERDFKAWKNKLHEAYRAVEAEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDN FT LSEAVAVFGSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITGIDDRRHVLLKIERKDG FT SVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKIDFVHHVSYELRSPLTTIIGFAHFLSDSSTGPLT FT EKQAEYVNYITTSTNALMAIINNILDLASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGD FT ERRVVQVLYNLLANAIDFSPSQGTVRLTVRRGETRVAFTVTDSGPGIAPAFKEKMFDLFESDPQGSRHRGAGLGLSLVRS FT FVELHGGKVLVESAVGRGTSVTCEFPIEPAAQRHAAE* " FT gene complement(89441..91954) FT /locus_tag="Rpal_0082" FT /colour=15 FT misc_feature complement(91721..91777) FT /colour=11 FT /locus_tag="Rpal_0082" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(91844..91954) FT /colour=11 FT /locus_tag="Rpal_0082" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.997 at FT residue 37" FT CDS complement(92174..92632) FT /locus_tag="Rpal_0083" FT /product="deoxyuridine 5'-triphosphate nucleotidohydrolase FT Dut" FT /note="TIGRFAM: deoxyuridine 5'-triphosphate FT nucleotidohydrolase Dut" FT /note="PFAM: deoxyUTP pyrophosphatase" FT /note="SPTR: O52597 Deoxyuridine 5'-triphosphate FT nucleotidohydrolase (EC 3.6.1.23) (dUTPase) (dUTP FT pyrophosphatase). Bradyrhizobium japonicum." FT /note="KEGG: bja:bll0758 deoxyuridine 5'-triphosphate FT nucleotidohydrolase " FT /note="COGs: COG0756 dUTPase category=F" FT /note="InterPro IPR003232:IPR008180:IPR008181" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MTQKITVSIRHLPHGEGLPLPEYQTAHAAGLDLIAAVPQDAPLTLQPGRYVLVPTGLTIALPENYEAQVRPRSGLAAKHG FT VTVLNAPGTIDADYRGEIGVLLINHGTEPFAIRRGERIAQMVIAPVSRAQFVAVEALPESGRGAGGFGSTGR* FT " FT gene complement(92174..92632) FT /locus_tag="Rpal_0083" FT /colour=16 FT CDS complement(92629..94074) FT /locus_tag="Rpal_0084" FT /product="phosphopantothenoylcysteine FT decarboxylase/phosphopantothenate/cysteine ligase" FT /EC_number="4.1.1.36" FT /EC_number="6.3.2.5" FT /note="TIGRFAM: phosphopantothenoylcysteine FT decarboxylase/phosphopantothenate/cysteine ligase" FT /note="PRIAM: Phosphopantothenoylcysteine decarboxylase., FT Phosphopantothenate--cysteine ligase" FT /note="PFAM: flavoprotein; DNA/pantothenate metabolism FT flavoprotein domain protein" FT /note="SPTR: Panthotenate metabolism flavoprotein - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0759 bifunctional FT phosphopantothenoylcysteine FT decarboxylase/phosphopantothenate synthase " FT /note="COGs: COG0452 Phosphopantothenoylcysteine FT synthetase/decarboxylase category=H" FT /note="InterPro IPR003382:IPR005252:IPR007085" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MANLTIRKLDDVLKSELRQRAAANGRSMEDEVRVILRDACHKRLGFAEPASADLSVPAPPAADEPADGPRAQPQAGTVRV FT TLIVGGGIAAYKAMDLIRRLKERGADVRVVLTKAAQQFVTPLTASALSHQRCYTDLFDPSSEFDAGHIRLARDCDLIVVA FT PATADLMAKIAGGHADDLATAILLATNRQILLAPAMNPLMWNNAATRRNVAQLKQDGVAMVGPNAGEMAERGEAGIGRMA FT EPTEIAVAAEALWRPQPPKPLLGKRVLITAGPTHEPIDPVRYIANRSSGKQGYAIAAAAAAAGAEVALISGPVELRAPAG FT VDCIRVESAREMLAAVQSALPADVAIFAAAVADWRVAAEGMQKLKKGAAGPPPLQLTENPDILAMISKLTEGRPPLVIGF FT AAETENLIDNATAKLARKGCDWIVANDVSPATGVMGGDRNTVHLLMRHDAATDLESWPLMTKDEVATALVARIAQAMAVH FT A* " FT gene complement(92629..94074) FT /locus_tag="Rpal_0084" FT /colour=12 FT CDS complement(94128..95705) FT /locus_tag="Rpal_0085" FT /product="2-polyprenylphenol 6-hydroxylase" FT /note="TIGRFAM: 2-polyprenylphenol 6-hydroxylase" FT /note="PFAM: ABC-1 domain protein" FT /note="SPTR: 2-octaprenylphenol hydroxylase - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0082 ubiquinone biosynthesis protein FT UbiB " FT /note="COGs: COG0661 unusual protein kinase category=R" FT /note="InterPro IPR000719:IPR004147:IPR010232" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VIAALTHVARLGRAAFVFAREGVFGVVDPALIPPAGQVPVRLARLIERRGAKSGARLSRALTRLGPAYLKLGQFLATRPD FT VVGVAMARDLESLQDRLPPFSQDEAEQVIAISLERPVRDLFVSLSPPVAAASIAQVHRGEIELDGVRKQVAVKVLRPNVS FT SRFRRDLSDFFYVAEKAELYSAEARRLRLVEVINTMSRSVAMEMDLRLEAAAASEMAENTKDDPDFRVPTVDWDRTSHNV FT LTMEWIDGIPLNDHARLKEANVDTVELGRKVIQSFLRHALRDGFFHADMHPGNLFLDRDGKLVAVDFGIMGRLLPKERRF FT LAEILLGFITRNYRRVAEVHFEAGYVPPHHSVENFAQAIRAIGEPIHNRLAEEISMAKLLTLLLEVTGLFDMRTRPELIL FT LQKTMVVVEGVARSFDPKLDIWKVADPVVREWIQRNLGPIGKVEGALAGAGELGHTLTSLPTIVSRAVTVLNQLEVMTKD FT GLVLAPETIAAIGRTERGRTRGRTVALWVIAATFIGVLIALSRMI* " FT gene complement(94128..95705) FT /locus_tag="Rpal_0085" FT /colour=11 FT misc_feature complement(94143..94193) FT /colour=11 FT /locus_tag="Rpal_0085" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(95702..96463) FT /locus_tag="Rpal_0086" FT /product="ubiquinone/menaquinone biosynthesis FT methyltransferase" FT /note="TIGRFAM: ubiquinone/menaquinone biosynthesis FT methyltransferase" FT /note="PFAM: UbiE/COQ5 methyltransferase; FT Methyltransferase type 11; Methyltransferase type 12" FT /note="SPTR: Q89WD0 Ubiquinone/menaquinone biosynthesis FT methyltransferase ubiE (EC 2.1.1.-). Bradyrhizobium FT japonicum." FT /note="KEGG: bja:bll0761 ubiquinone/menaquinone FT biosynthesis methyltransferase " FT /note="COGs: COG2226 Methylase involved in FT ubiquinone/menaquinone biosynthesis category=H" FT /note="InterPro IPR004033:IPR013216:IPR013217" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MTEPGETTHFGYRDVPLDEKQTLVNDVFHSVAGRYDLMNDLMSGGMHRLWKDVMITTLNPPRDDTPFRLLDVAGGTGDIS FT FRAAKASGAGFHSTVCDINTDMLEVGRQRAVERNLDDKVDFVEGNAESLQFDDRSFDAYTIAFGIRNVPRIDLALKEAYR FT VLKPGSRFLCLEFSSVDVPGLSKLYDLFSFKVIPEIGRVVTGDADSYQYLVESIRKFPKPYDFAEMMRDAGFARANWQVM FT SGGIVALHSGWRL* " FT gene complement(95702..96463) FT /locus_tag="Rpal_0086" FT /colour=12 FT CDS 96707..97582 FT /locus_tag="Rpal_0087" FT /product="formamidopyrimidine-DNA glycosylase" FT /EC_number="3.2.2.23" FT /note="TIGRFAM: formamidopyrimidine-DNA glycosylase" FT /note="PRIAM: DNA-formamidopyrimidine glycosylase" FT /note="PFAM: Formamidopyrimidine-DNA glycosylase catalytic FT domain protein; DNA glycosylase/AP lyase, H2TH FT DNA-binding" FT /note="SPTR: A5E887 Formamidopyrimidine-DNA glycosylase FT (EC 3.2.2.23) (Fapy-DNA glycosylase) (DNA-(apurinic or FT apyrimidinic site) lyase mutM) (EC 4.2.99.18) (AP lyase FT mutM). Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)." FT /note="KEGG: bbt:BBta_0080 formamidopyrimidine-DNA FT glycosylase/DNA-(apurinic or apyrimidinic site) lyase MutM FT " FT /note="COGs: COG0266 Formamidopyrimidine-DNA glycosylase FT category=L" FT /note="InterPro FT IPR000191:IPR000214:IPR012319:IPR015886:IPR015887" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MPELPEVETVRRGLQPAMEGFRIDRAVAHRENLRFPLQKDFAARLTGQTVTGLGRRAKYLLADLSSGDVLLMHLGMSGSF FT RVIGADGETTPGEFHYPRSEDRTHDHVVFEMASGARVVFNDPRRFGFMKVFPRSEIETEPHLKGLGPEPLGNAFDASLLA FT KACAGKQTSLKAALLDQRVVAGLGNIYVCEALFRAHLSPKRKASTLANRKEEPTDHAVRLTEAIREVLGEAIKAGGSSLR FT DHRQTSGELGYFQHAFKVYDREGKPCPTCGGTVQRFVQNGRSTFWCPKCQK* " FT gene 96707..97582 FT /locus_tag="Rpal_0087" FT /colour=2 FT CDS complement(97634..98980) FT /locus_tag="Rpal_0088" FT /product="Peptidoglycan-binding domain 1 protein" FT /note="PFAM: Peptidoglycan-binding domain 1 protein" FT /note="SPTR: Bll0764 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0764 hypothetical protein " FT /note="InterPro IPR002477" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRSMLAATLIVAGAATLPVHGAHAAPPKQAAAAPPAAQTPAETAKTLAQAERQAIQSDLAWTGDYNGLINGEVSDRMIAA FT IKQFQTNQGHKPTGVLNPQERGQLAAAARKLQASVGWKLVADPVTGARIGVPTKLVPQQASDAGGTRWSSSTGTIQVALS FT RRKEADLSIAKLAEQEKKQPGRKVEYSAVRPDFFVLSGTQGQKKFYIRGSFKNAEVRILTVMYDQATEGTMQPVVVAMSS FT AYDPFPGGVQAGPPPRKKVEYSTGTIVGADGAILADREAVEGCLSIVVAGYGPADLADRSKEHELALLRIYGASELKPLP FT IGSGAAKPGAVEITGVADPQSQGGGAAVTTVKAQLTAAVTTDGLIVTPPPSLGFSGAPARDADGRFAGLTTLRLPLVAGA FT AESAAPPQATLITADTVRSYLTGVGVKPVEGTTKDPKASVVRVICVRK* " FT gene complement(97634..98980) FT /locus_tag="Rpal_0088" FT /colour=13 FT sig_peptide complement(98906..98980) FT /colour=11 FT /locus_tag="Rpal_0088" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.981 at FT residue 25" FT CDS 99189..99989 FT /locus_tag="Rpal_0089" FT /product="UBA/THIF-type NAD/FAD binding protein" FT /note="PFAM: UBA/THIF-type NAD/FAD binding protein; FT MoeZ/MoeB domain protein" FT /note="SPTR: Molybdopterin biosynthesis protein - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0765 molybdopterin biosynthesis FT protein " FT /note="COGs: COG0476 Dinucleotide-utilizing protein FT involved in molybdopterin and thiamine biosynthesis family FT 2 category=H" FT /note="InterPro IPR000594:IPR007901" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MLSAEELERYARHIVLRDVGGPGQAALKGARVLVVGAGGLGAPVLMYLAAAGIGTLDIVDDDIVTLSNLQRQVIHATPDI FT GARKADSAASRILALNPHVRVVQHRVRLDGSNALTLIGGCDLVLDGSDNFATRYLVSDACYLAKKPLITAALGQFDGSLT FT TIRAHECNAAGEPNPTYRCLFPEPPPAGTVPSCEEAGVMGALAGVLGSMMALEAIREIVGFGEGLVGRLVMIDARAMRFE FT TLRYSRDPQNPLNGDAPTITDLSRHL* " FT gene 99189..99989 FT /locus_tag="Rpal_0089" FT /colour=12 FT misc_feature 99282..99350 FT /colour=11 FT /locus_tag="Rpal_0089" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 100114..101802 FT /locus_tag="Rpal_0090" FT /product="protein of unknown function DUF894 DitE" FT /note="PFAM: protein of unknown function DUF894 DitE; FT major facilitator superfamily MFS_1" FT /note="SPTR: MFS permease - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0559 MFS permease " FT /note="COGs: COG2814 Arabinose efflux permease category=G" FT /note="InterPro IPR007114:IPR010290:IPR011701" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MAGTAKRGLFSGDGIAAPLRHALFRRIWLASLLSNLGLMINGVGAAWAMTQMTASADKVALVQTALMLPIMLVAMPAGAI FT ADMYDRRLVALAALGIGLAGATTLAALAHLGLVTPNTLLLFCFVIGTGMALFGPSWQASVSEQVPAETLPAAVALNGISY FT NIARSFGPAVGGIVVAAAGAVAAFAANAVLYLPLLIVLLLWRRDSEPPRLPPERLNRAIVSGVRYITNSPAIRIVLTRTL FT VTGIAGSSVLALMPLVARDLLHSGAETYGLLLGAFGIGAVIGALNVGIARQRLSSEAAVRLCAMIMGVAMAVIAISRSPL FT LTAAALVVAGAVWMLAIALFNIGVQLSAPRWVAGRSLAAFQASISGGIAIGSWGWGHVADLSGVAPSMLLSGLAMLASPV FT LAFLLPMPPVGTRTEDAELLADPELKLALTSRSGPVVIEIEYRIDADEARAFHNVMQEVQLSRQRNGAYGWSIARDVADP FT ELWTERYHCPTWLDYLRQRSRSTQDDRALHRRAIAFHRGPEPVRVRRMLERPFGSVRWKEESPDRTTATEVLPVAGVSGG FT ST* " FT gene 100114..101802 FT /locus_tag="Rpal_0090" FT /colour=4 FT misc_feature order(100192..100260,100288..100356,100375..100443,100630..100698,100816..100884,100912..100980,100999..101067,101077..101145,101164..101232,101260..101328) FT /colour=11 FT /locus_tag="Rpal_0090" FT /note="10 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(101783..101881) FT /locus_tag="Rpal_0091" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSKTRPTMRPDEIDPEISPEINPEINPMSNRR*" FT gene complement(101783..101881) FT /locus_tag="Rpal_0091" FT /colour=13 FT CDS complement(101934..102152) FT /locus_tag="Rpal_0092" FT /product="conserved hypothetical protein; putative signal FT peptide" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0286 conserved hypothetical protein; FT putative signal peptide " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLKIIGPLVCLTLIAGAAQAQERRPDPGCGRDVSRLCRAVMNESDGAILNCLQQHRAKLSAKCAKVLTDNGQ*" FT gene complement(101934..102152) FT /locus_tag="Rpal_0092" FT /colour=13 FT sig_peptide complement(102090..102152) FT /colour=11 FT /locus_tag="Rpal_0092" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.999 at FT residue 21" FT CDS complement(102281..102622) FT /locus_tag="Rpal_0093" FT /product="conserved hypothetical protein" FT /note="SPTR: Blr3464 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr3464 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MADKNSSDVILNVMTKNLEQARGAMTNYLEFISKSMSVVPMGQSSQATTLKGYVDRNVQATFDFSQQLLHAKDFQDVVRI FT QTEFLQTQFRVLTDQAKDVVEMTKPTVIVPNDG* " FT gene complement(102281..102622) FT /locus_tag="Rpal_0093" FT /colour=13 FT CDS complement(102861..103265) FT /locus_tag="Rpal_0094" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MQNWFIALAVAVLLLIGFAAGPMSVVVAFLAFWVTLYLVWARELGFKDTWSRYGLQRVKPPFWAAENKVWFFPIFDDRAK FT VVKAAAVPLLIIALSLMLPTSVVRIGTLLVLAWYCLEIYRSQKGMDQLDRARFN* " FT gene complement(102861..103265) FT /locus_tag="Rpal_0094" FT /colour=13 FT misc_feature complement(order(102918..103010,103143..103244)) FT /colour=11 FT /locus_tag="Rpal_0094" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(103179..103265) FT /colour=11 FT /locus_tag="Rpal_0094" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.597 at FT residue 29" FT CDS complement(103344..103685) FT /locus_tag="Rpal_0095" FT /product="hypothetical protein" FT /note="KEGG: mex:Mext_0878 collagen triple helix repeat " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRSSSMILLGAIALVAALSVVNQVGVPHPALIEPAVAATPIAPPVSAFRTVTSSTCSSNGCPTSCEADEALISAICIGPS FT SAKFSDNLSLENGQMTASCGPSSSTIVVSCARK* " FT gene complement(103344..103685) FT /locus_tag="Rpal_0095" FT /colour=13 FT misc_feature complement(103608..103664) FT /colour=11 FT /locus_tag="Rpal_0095" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(103617..103685) FT /colour=11 FT /locus_tag="Rpal_0095" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.998) with cleavage site probability 0.601 at FT residue 23" FT CDS complement(104226..104501) FT /locus_tag="Rpal_0096" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO2381 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRHHYEIAVTKLIPDGATLSPPISFAAESHDDLADIIRRVTDKGLFDPEETKAFCVGLKLLGGVMLQHRDKELFKDFAPAFGALMKTLKAR*" FT gene complement(104226..104501) FT /locus_tag="Rpal_0096" FT /colour=13 FT CDS 104632..105279 FT /locus_tag="Rpal_0097" FT /product="transcriptional regulator, TetR family" FT /note="PFAM: regulatory protein TetR" FT /note="SPTR: Transcriptional regulator, TetR family - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_2740 putative transcriptional FT regulator, TetR family " FT /note="COGs: COG1309 Transcriptional regulator category=K" FT /note="InterPro IPR001647" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MPRPRKQQAIDPNGENRKLRQVLAAARKLFADHGFDVTSMDAIAREAGVSKATLYVHFASKDALLLALVDDECRNFGPQM FT LWQPDGQPIELEPALRAIARGYTSFFLDDRGLKLHRLVMSNAARFPQMAAVFMAAGPRRCEEEVANFLRAAVAQQLLTIP FT DIGLAAVQFLSLVQGRLQLQWELQLGRPSEADVQALIDGGIRVFLTAYRNPEVSS* " FT gene 104632..105279 FT /locus_tag="Rpal_0097" FT /colour=6 FT CDS 105276..106193 FT /locus_tag="Rpal_0098" FT /product="PepSY-associated TM helix domain protein" FT /note="PFAM: PepSY-associated TM helix domain protein" FT /note="SPTR: Bll3835 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll3835 hypothetical protein " FT /note="InterPro IPR005625" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MNNVLLLKLHRWTSLVFALPLLAIIVTGLILSVEPMLQGRGLPAGTLDAARLTGLIERYDPQGQARGLAINATGQQMRLL FT GVNAPPIDLATGEAAAASDATGDLLLWARRTHERLLGYEWLVIASTIAMTVLMTIGVLMGLPRLRNSLAGWHKGAAWFTL FT PLLLLSPLTALCMAFGLTFSSGPPPSRVTIKLPDAVQQIAQSHDVSHLAMIANRGGRMMARIYQDGELRAYTFTPDGVTA FT LPRNWPRLLHEGNWSTWLSGTLNVITSVVLIVLLITGVWLWTRRKLRRRPPSARSAGPVLAAPLS* FT " FT sig_peptide 105276..105374 FT /colour=11 FT /locus_tag="Rpal_0098" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.904) with cleavage site probability 0.786 at FT residue 33" FT gene 105276..106193 FT /locus_tag="Rpal_0098" FT /colour=13 FT misc_feature order(105309..105377,105633..105701,105738..105806,106050..106118) FT /colour=11 FT /locus_tag="Rpal_0098" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 106242..107468 FT /locus_tag="Rpal_0099" FT /product="efflux transporter, RND family, MFP subunit" FT /note="TIGRFAM: efflux transporter, RND family, MFP FT subunit" FT /note="PFAM: secretion protein HlyD family protein" FT /note="SPTR: Secretion protein HlyD precursor - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0992 secretion protein HlyD " FT /note="COGs: COG0845 Membrane-fusion protein category=M" FT /note="InterPro IPR006143" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VTRLFHANLCPTRAKTLHFLPSVRSLFMSPVVRRPALALVALLAASPALAQMPGGGPPAVGTITARPQAITETTEINGRI FT QAIGRVDLTARVNAYLQEQLFVEGAEVKKGDLLFRLEQPPFEADAEAKRAAVDQAQAQLDYADLALGRAEQLLKTSSGSQ FT STADNARAAQRTAAAQLRSAQAQLRQSEINLGYTEIRSPIDGRIGRIQVTLGNVVGPSSGALATVVSQDPAYVVFPISVN FT RLLQLREEFAAQGGLEAMKIRLRLPDGRLYREVGKLQFVDVAVARDTDSIILRGTIANPPLAGGGRELTHDEMVRVLLEG FT SKPREVLAIPRAAILTDQQGDYVYVVSDKNVAERRRVKLGQSTAQIASVIDGLKAGDQVIVEGVQRARPNAPVTPTPAAA FT TTALPTPR* " FT sig_peptide 106242..106394 FT /colour=11 FT /locus_tag="Rpal_0099" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 1.000 at FT residue 51" FT gene 106242..107468 FT /locus_tag="Rpal_0099" FT /colour=9 FT CDS 107472..110621 FT /locus_tag="Rpal_0100" FT /product="transporter, hydrophobe/amphiphile efflux-1 FT (HAE1) family" FT /note="TIGRFAM: transporter, hydrophobe/amphiphile FT efflux-1 (HAE1) family" FT /note="PFAM: acriflavin resistance protein" FT /note="SPTR: Hydrophobe/amphiphile efflux-1 HAE1 precursor FT - Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0993 hydrophobe/amphiphile efflux-1 FT HAE1 " FT /note="COGs: COG0841 Cation/multidrug efflux pump FT category=V" FT /note="InterPro IPR000731:IPR001036:IPR004764" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MIADTFIDRPRLAAVIALVTTLVGALALLRIPVAQLPDIVPPQVRVSTTYPGASAEVLESTVAQPIEAKVVGVDKMIYMK FT SSSGNDGSYTLDVSFALGTNPDINTVNVNNRVQNALSQLPSEVRLQGVTVQKRSSSMLQVINMSSTGQKYDQLFLTNYGL FT INVLDELARVPGVGEAALFGRYAYSMRIWFDIEKLSSLGLVPSDVVAAISAQNVQAPVGRIGARPVPDDQKFQFNLQTQG FT RLTKPEEFGAIVLRANADGSVLKVSDVARVELGAQNADTYARLNGDPTIGIGIFLAPGANAINTAAAINAKLDTLRPRFP FT ESVQARVVYDATVFVNDTISAVLHTLFEAFALVAVVVFLFLGNLRATLIPIIAVPVSLIGTFAVLIAFGTSVNTVSMLAL FT VLAIGIVVDDAIVVVENVERVMEEEPELSPADATKKAMAQVTAPIIAITLVLLSVFVPIGFLPGIMGELFRQFAVTISAA FT MLISAVNALTLSPAMCALFLRHEGQRRGFMQKVGRGIDRARDGYTSTVRIALRRPALSVLAVAACGAGIWGLSLTTPSGF FT LPEEDQGAFFINVQLPDGASVARTEATVIEVEKIVKQMPEVRDVLSIVGLSLLDNYSASNNAFMIVQLKPFADRKAASSS FT AQTLIGKTFGATQAVRTATVLPFNLPPVVGLSTAGGFQYQLESLEGAEPAAIAGVTNGLVAAGNQNPLLTRVFSTYNANA FT PSLYLDIDREKAQSLGITINDIFSALQISLGGLYINNFNLFGRTWQVNLQGDASARRDLPNLWDIYVRNTKGAMVPLQSI FT ATVRTVTGPAVITRYNNYRSVTINGSPAPGVSSGTAMAAMAEVSAKTLPPGYAFEWTGTAYQEHEAVGKTGYILALAVIF FT AYLFLVALYESWVIPVPVLLSVSIAVLGAFAGILVGRVTLDLYAQIGLVVLIALAAKNGILIVEFAKEQREAGLSIKAAA FT EMGAKLRFRAVMMTSIAFILGLVPLVWADGAAMLARRNLSTPVFAGMLTASLIGIILIPMLYVVFQSLREKVAEPGVLTP FT LSLKRLLKR* " FT gene 107472..110621 FT /locus_tag="Rpal_0100" FT /colour=9 FT misc_feature order(107505..107573,108486..108554,108573..108641,108654..108713,108792..108860,108903..108971,109059..109127,110079..110138,110157..110225,110238..110306,110367..110435,110478..110546) FT /colour=11 FT /locus_tag="Rpal_0100" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 110760..111170 FT /locus_tag="Rpal_0101" FT /product="protein of unknown function DUF1078 domain FT protein" FT /note="PFAM: protein of unknown function DUF1078 domain FT protein" FT /note="SPTR: Putative flagellar basal-body rod protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO6624 putative flagellar basal-body FT rod protein (FlgC) " FT /note="COGs: COG1558 Flagellar basal body rod protein FT category=N" FT /note="InterPro IPR001444:IPR010930" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSAIASIAVSGLNAATRRLEVSASNIANQRSTGALPGADGTVPPGAPQAYKPLQVNQTDTPTGGTQTSLATTSPATVPVS FT DPQAPFADADGMVAAPNVDLAQEFIGQMVAKYSYTANLASLQADRDMTKALLDAKV* FT " FT gene 110760..111170 FT /locus_tag="Rpal_0101" FT /colour=9 FT CDS complement(111313..112371) FT /locus_tag="Rpal_0102" FT /product="oligopeptide/dipeptide ABC transporter, ATPase FT subunit" FT /note="TIGRFAM: oligopeptide/dipeptide ABC transporter, FT ATPase subunit" FT /note="PFAM: ABC transporter related; FT Oligopeptide/dipeptide ABC transporter domain protein" FT /note="SMART: AAA ATPase" FT /note="SPTR: Oligopeptide/dipeptide ABC transporter, FT ATPase subunit - Delftia acidovorans SPH-1" FT /note="KEGG: mrd:Mrad2831_4760 oligopeptide/dipeptide ABC FT transporter, ATPase subunit " FT /note="COGs: COG0444 ABC-type FT dipeptide/oligopeptide/nickel transport system ATPase FT component category=E" FT /note="InterPro IPR003439:IPR003593:IPR010066:IPR013563" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MMIHEDLRPADGDPYLLDVNDLVVHFRTGRKRPWGKPSFVHAVDGVSFRVKRGTTFGIVGESGSGKSTTAQAIMRLVQAT FT SGQVVFRGEDIMPLTGEPLRKARKHLQIVFQDPFSALDPRRRAGDQIREPLDLLEIGSRSERDARVRKLLAEVGLPPEAA FT DLFPHQFSGGQRQRLCIARALAPEPELIVCDEAVSALDVAIQAQILNLLKKLQRERGLTYIFISHDLGVIQQFCDEIAVM FT YLGKIAEQAPASALFTAPRHPYTWSLVSAAVPPGPLRDELKAKYLVKGEPPSPVDPPPGCRFAQRCPFAEARCRAELPFL FT DAAGHEHYVACHRKDEIGVPDFAPRVASGPIG* " FT gene complement(111313..112371) FT /locus_tag="Rpal_0102" FT /colour=10 FT CDS complement(112368..113366) FT /locus_tag="Rpal_0103" FT /product="oligopeptide/dipeptide ABC transporter, ATPase FT subunit" FT /note="TIGRFAM: oligopeptide/dipeptide ABC transporter, FT ATPase subunit" FT /note="PFAM: ABC transporter related; FT Oligopeptide/dipeptide ABC transporter domain protein" FT /note="SMART: AAA ATPase" FT /note="SPTR: Peptide ABC transporter, ATP-binding protein FT - Rhodobacterales bacterium HTCC2150" FT /note="KEGG: mrd:Mrad2831_4761 oligopeptide/dipeptide ABC FT transporter, ATPase subunit " FT /note="COGs: COG0444 ABC-type FT dipeptide/oligopeptide/nickel transport system ATPase FT component category=E" FT /note="InterPro IPR003439:IPR003593:IPR010066:IPR013563" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MAPVLSVENLSVSMTNRDGDLVPVLENLSFTVQKSRTIALVGESGCGKSMTALAIMRLLPEGFVVTGGRIVLDGEDLLTA FT RPKRMRALRGDAMSMVFQEPMTALNPLYTVGDQIAEVLYYHRRLSRKDAAEQAVQFLKAVQIPAAEQRAKAYPHQMSGGM FT RQRVMIAMALACRPKLLIADEPTTALDVTVQAQIFDLLAQLQDETEAAIVLITHDLGAVAELAYDIAVLYAGRCIETGPA FT HEIAARPRHPYTRGLLGCVPHLTVGVAKPEEWVDLGEIPGMVPALGNRGPDCAFLARCANASEACRSRPQPPLGTIAAGH FT AVSCWRAEEIAA* " FT gene complement(112368..113366) FT /locus_tag="Rpal_0103" FT /colour=10 FT CDS complement(113369..114277) FT /locus_tag="Rpal_0104" FT /product="binding-protein-dependent transport systems FT inner membrane component" FT /note="PFAM: binding-protein-dependent transport systems FT inner membrane component" FT /note="SPTR: Binding-protein-dependent transport systems FT inner membrane component - Delftia acidovorans SPH-1" FT /note="KEGG: mrd:Mrad2831_4762 binding-protein-dependent FT transport systems inner membrane component " FT /note="COGs: COG1173 ABC-type FT dipeptide/oligopeptide/nickel transport systems permease FT components category=E" FT /note="InterPro IPR000515" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSTMESSLAMAQKPLPSVSKVPKAVSPARAALRQFMKSPSGVAGALLLLLLLAGTALGPWLHPVDPLDIVGLPFAAPAAD FT APLGTDYLGRDVLAGLIYGGRATLTVGAVAALITIVIGVTVGALAGFFGGWVDALLVKIAEFFQVLPPLLFAMVLVTLFG FT PKLSTITLAIGAVSWTSAARLTRAEFMRLRDLDFIKASRAAGAGSLHLILRVVLPNALPPIIVSATLAIGTAILFEGGLS FT FLGLGDPNTMSWGLMIGQNRNYVLDAWWAVTFPGAAIFLAVLAVSLVGDGVNDAVNPRLRRR* FT " FT gene complement(113369..114277) FT /locus_tag="Rpal_0104" FT /colour=10 FT misc_feature complement(order(113414..113479,113543..113608,113795..113860,113882..113947,114095..114160)) FT /colour=11 FT /locus_tag="Rpal_0104" FT /note="5 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(114274..115254) FT /locus_tag="Rpal_0105" FT /product="binding-protein-dependent transport systems FT inner membrane component" FT /note="PFAM: binding-protein-dependent transport systems FT inner membrane component" FT /note="SPTR: Binding-protein-dependent transport systems FT inner membrane component - Delftia acidovorans SPH-1" FT /note="KEGG: mrd:Mrad2831_4763 binding-protein-dependent FT transport systems inner membrane component " FT /note="COGs: COG0601 ABC-type FT dipeptide/oligopeptide/nickel transport systems permease FT components category=E" FT /note="InterPro IPR000515" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MALLTHLFGKLANAVALLLAVLVMNFCLIHLAPGDPVQVIAGEMGGASPEVIAALRAKYGLDHSLLEQMFTYLGKVAHGD FT FGYSYYFNQPVLGLILQRLPATLYLAAASLVVAVLIGTVLGVISARRPNGLLSHGVTVLSLAGHAAPIFWTGLLLLLLFG FT SVWPILPVNGMTDVVNPKTGFAYAADVAKHLVLPSITLGLVFVAQYSRLARVNMIDVLSADYIRTARAKGLPERVVLVKH FT ALRNTLIPIVTVVGLQFGNLFAGAVLVETVYSWPGMGRLVFDSILRRDYPTLMGVLFFSAVMVIAANILTDLVYRLIDPR FT IRAGAR* " FT gene complement(114274..115254) FT /locus_tag="Rpal_0105" FT /colour=10 FT misc_feature complement(order(114316..114381,114442..114507,114643..114708,114754..114819,114883..114948,115153..115218)) FT /colour=11 FT /locus_tag="Rpal_0105" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(115283..116884) FT /locus_tag="Rpal_0106" FT /product="extracellular solute-binding protein family 5" FT /note="PFAM: extracellular solute-binding protein family FT 5" FT /note="SPTR: Extracellular solute-binding protein family 5 FT - Delftia acidovorans SPH-1" FT /note="KEGG: mrd:Mrad2831_4764 extracellular FT solute-binding protein family 5 " FT /note="COGs: COG0747 ABC-type dipeptide transport system FT periplasmic component category=E" FT /note="InterPro IPR000914" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MMLTKRSFVVGALGGIALMGLPLETKAEGAGSGGTLVIGSTQVPRHFNGAVQSGIATALPSTQIFASPLRYDDNWNPQPY FT LAESWDVSKDGLTVTLKLVKNATFHDGKPVTSEDVAFSIMTIKANHPFKTMLAAVESVDTPDPHTAVIKLAHPHPALLLA FT MSPALMPILPKHVYGDGQDVKSHPANLKPIGSGPYKLTEYKQGDYYTLEKFDKFFIPGRPKLDKIVVRLISDPNALMVSA FT ERGDVHMVPYFTGVRDIERLEKAPNVVVTDKGFAGIGALNWLAFNTKKKPLDDVRVRQAIGYAANREFIVKKLMGGKALP FT STGPIAPGSPLEEKNVEQYKFDIAKANKLLDEAGLKPDGSGVRTTLTIDYIPGNDEQQRNVAEYLRSALKRVGINLEVRA FT APDFPTWAQRVASFDFDMTMDTVFNWGDPVIGVDRTYLSSNIRKGIIWSNTQQYANPKVDEILGQAAQESSPDKRKALYS FT EFQKIVVEDAPIFYINATPYHTSFAKGLGNLPTTVWGVASPLDELYWVTPPKN* " FT gene complement(115283..116884) FT /locus_tag="Rpal_0106" FT /colour=10 FT sig_peptide complement(116801..116884) FT /colour=11 FT /locus_tag="Rpal_0106" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.906) with cleavage site probability 0.492 at FT residue 28" FT CDS complement(116974..117930) FT /locus_tag="Rpal_0107" FT /product="cobalamin synthesis protein P47K" FT /note="PFAM: cobalamin synthesis protein P47K; cobalamin FT synthesis CobW domain protein" FT /note="SPTR: Cobalamin synthesis protein, P47K - FT Verminephrobacter eiseniae (strain EF01-2)" FT /note="KEGG: mrd:Mrad2831_4765 cobalamin synthesis protein FT P47K " FT /note="COGs: COG0523 Putative GTPase (G3E family) FT category=R" FT /note="InterPro IPR003495:IPR011629" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTAASATISVTVIGGFLGAGKTTFVNHLLRSGGPRTAVLVNDFGEVNVDATLIQSHDGTTMTLTNGCICCSIGTSFIDTM FT CQVLDAAVPFERIVIEASGVGDPWKIAEIALIEPSLRLDRVIVLADASRIAQLIEDSKVGDTVRGQFERCDIVLLNKTDL FT VNAEALTAARTAVRSLRLDVGIVATAQGAMPTLAELKTAASSSGFRADAVDAAAIDHGATFKSWAYRRAGRFDRVRLACA FT VDKLPPQLLRLKGSCRLAGEDDVKVFQMVESVWSLSPADAGPVEPGIVLVGVGTADLPPPAELDAILDRALAPAGALS* FT " FT gene complement(116974..117930) FT /locus_tag="Rpal_0107" FT /colour=11 FT CDS complement(117927..119570) FT /locus_tag="Rpal_0108" FT /product="Amidohydrolase 3" FT /note="PFAM: amidohydrolase; Amidohydrolase 3" FT /note="SPTR: Amidohydrolase-like - Burkholderia sp. FT (strain 383) (Burkholderia cepacia (strain ATCC 17760 / FT NCIB 9086 / R18194))" FT /note="KEGG: mrd:Mrad2831_4766 amidohydrolase 3 " FT /note="COGs: COG1574 metal-dependent hydrolase with the FT TIM-barrel fold category=R" FT /note="InterPro IPR006680:IPR011550:IPR013108" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VTSETVVYSARKIITMNPSRPSATHVAVRDGRIVATGSADELMVTGARLDTRFADKVLMPGFVEGHSHIMEGLMWKQPYV FT GAFDRRSPEGKVVAGVPDIEAIVARLQQAEAAMPDDGSPLYAWGFDPLHIGGTMLTRQDLDKVSTKRPVLVVHASFHINN FT VNTLTLERAELLHATNISGVVAGADGLASGELQGIPARMRLFRALGHNPLAGTITEADVRRYAASCCVQGVTTITDLHND FT LADPTIEVYRAATSQADFGVRLVPALAAVSHTPEQAIAKLETLRGHASDKLHYGIVKLVVDGSIQGFTARLRWPGYHNGA FT ANGLWYIAPEELPRLVEAYHRAGVQLHIHTNGDEATEVALDAIEAAQTVAPRPDHRHTLQHCQMASAAQFRRMKNLGVCA FT NLFANHLYYWGDAHYELTMGPERAARLDATGTAQRIGVPFAIHSDAPVTPLAPLFTAWCAVNRVSSSGRVLGRDTEALTT FT EQALAAITIGAAYTLKMDHLVGSIETGKYADFVVLDEDPLAVPPERLKEIAVWGTVVGGMIKEAPRA* FT " FT gene complement(117927..119570) FT /locus_tag="Rpal_0108" FT /colour=11 FT CDS 119809..121350 FT /locus_tag="Rpal_0109" FT /product="transcriptional regulator, GntR family with FT aminotransferase domain" FT /note="PFAM: regulatory protein GntR HTH; aminotransferase FT class I and II" FT /note="SPTR: Transcriptional regulator, MocR family - FT Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / FT Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 FT / DSM 428 / Stanier 337))" FT /note="KEGG: mrd:Mrad2831_4755 transcriptional regulator, FT GntR family with aminotransferase domain protein " FT /note="COGs: COG1167 Transcriptional regulators containing FT a DNA-binding HTH domain and an aminotransferase domain FT (MocR family) and their eukaryotic orthologs category=K" FT /note="InterPro IPR000524:IPR004839" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="VARTPNGGAIACSDAAALGKDELFWGALFRGLNRGGSFLQLQIRQIIVTAIEDGRLPLGMKMPSSRDLATVLKVSRNTVV FT IAYEQLVDQNFLVSRQRSGYFVAGLPKKFATEAPGLAEVTSRGDEHWVDRFAVRPSAHRNIVKPLDWQTHPYPFIFGQFD FT PSLFPTNDWRESARAALSVPEINNWARDLIDGDDPALIEQLQLQVLPRRGIHARADEIMMTIGAQHALYLIATLFINGQT FT KVGIEEPGYPDARNIFRMLTPNVVPLSVDSEGLVPDAMFQSCALAYVTASHQCPTAVTMPLPRRIELLKAAATGDVVVVE FT DDYEGELMPESATLPPLKSIDRASNVLYVGSLSKALAPGLRLGYVVAPAPVIRELRALRRLMLRHPPLNNQRVAALFIGL FT GHYRAHLAQVGRVLLERAKLLDQLLPKHLPSCSFSRGPGSTNFWVTCPTSIDATALAQAALEQGVVIEPGAVFSMDETAS FT RHCFRLGFSSIRTDRIEVGIQRLGEVIAQHLKA* " FT gene 119809..121350 FT /locus_tag="Rpal_0109" FT /colour=6 FT CDS complement(121366..122574) FT /locus_tag="Rpal_0110" FT /product="putative ABC transporter, substrate-binding FT protein; putative branched-chain amino acid transporter" FT /note="SPTR: Putative ABC transporter, substrate-binding FT protein; putative branched-chain amino acid transporter - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO6883 putative ABC transporter, FT substrate-binding protein; putative branched-chain amino FT acid transporter " FT /note="COGs: COG0683 ABC-type branched-chain amino acid FT transport systems periplasmic component category=E" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MTAMDRRCFLLGTATTMLVATSMKAQAADTTGITPTSIRIGSTSPQSGPVSAYGVQARCQAAYFKMINDRGGIAGRKIDF FT IYYDDAFNPAKTVEQTRKLVESDEVALLFSNLGTATNSAIVKYANAKKIPHLFLSVNGDKWSDYKAHPWSIGFAPSARTE FT AAIFVKHMLAEKPDAKFAVLYQNDDFGKDFVLGAKDVLGDRESRQLVTISHETSDPTIDSQILQLRAAAPDALISGTTAK FT FTAQAIRKVAETRWQVRHYITGGSSSYAGTIGPAGPENAVGVISSAYLKDVADPAWKDDQGIKDFLAFMQSYFPEGNKDD FT FYNLYAYTVASALVKVLTQCGDGWTRENIMAQATNLKDVELPTLLPGIRVNTSPTDYRPLTQVQLQKWDGKAWVRFGDVL FT GA* " FT gene complement(121366..122574) FT /locus_tag="Rpal_0110" FT /colour=10 FT sig_peptide complement(122491..122574) FT /colour=11 FT /locus_tag="Rpal_0110" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 1.000 at FT residue 28" FT CDS complement(122594..123634) FT /locus_tag="Rpal_0111" FT /product="Alcohol dehydrogenase GroES domain protein" FT /note="PFAM: Alcohol dehydrogenase zinc-binding domain FT protein; Alcohol dehydrogenase GroES domain protein" FT /note="SPTR: Alcohol dehydrogenase superfamily, FT zinc-containing - Geobacter metallireducens (strain GS-15 FT / ATCC 53774 / DSM 7210)" FT /note="KEGG: gme:Gmet_2235 alcohol dehydrogenase FT superfamily, zinc-containing " FT /note="COGs: COG1063 Threonine dehydrogenase and related FT Zn-dependent dehydrogenase category=E" FT /note="InterPro IPR013149:IPR013154" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MKAAVFEKTGERLVVRDVAAPALGDNELLLKVAFTGICGSDLHAAETPGMLQSGTVMGHEFTGEIVQSTAPDWPVGARVA FT ANPYWLCDACAAGGSCSGGGDAACANGSFMGFRPDLPGAYADYVRIRAGQAIRLPDKVSLRDGALMEPLAVARHAVDVCG FT PMQGADVLVIGGGPIGLGVVLMARDAGAARVVVSEPDPNRRACALQVGAVAAIDPIAEDLPTALGGLGLGAPGIVFECVG FT APGFLQQTIDVMALRGRAVIVGVCMTEDRVLPRAAIRKEATLKFVLGYTMADFHHVSRYLEEHAATAAAMISRVVSLSEL FT PEIFDRLRAEKSLIKVLVRPDQGSGT* " FT gene complement(122594..123634) FT /locus_tag="Rpal_0111" FT /colour=10 FT CDS complement(123664..125412) FT /locus_tag="Rpal_0112" FT /product="thiamine pyrophosphate protein domain protein FT TPP-binding" FT /note="PFAM: thiamine pyrophosphate protein domain protein FT TPP-binding; thiamine pyrophosphate protein central FT region; thiamine pyrophosphate protein TPP binding domain FT protein" FT /note="SPTR: Thiamine pyrophosphate enzyme TPP binding FT domain protein - Mycobacterium sp. (strain JLS)" FT /note="KEGG: mjl:Mjls_2332 thiamine pyrophosphate enzyme FT TPP binding domain protein " FT /note="COGs: COG0028 Thiamine pyrophosphate-requiring FT protein category=E" FT /note="InterPro IPR000399:IPR011766:IPR012000:IPR012001" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSAATSSAGDWLEGGELLARTLRDAGVDTVFALHGGHLESFYRGCIANDIRLVDFRHESSAGHAADGYARATGKLGVCVI FT TAGPGFTNGVTAILNAQLDSIPTLFIVGSPPLREAETNALQGGVDQIAVTLPMVKYAHRITNTERIPDLTALAIRKATTG FT RRGAVLLDVPIDVLHMRAHKDDVRPAHGLNINPRPAPHPDEIKAAIAILKASERPVIVVGGEARYSNCRDDLVALAEATQ FT IPVVSNTRGMGVFPSSHPLNGQVVGNLALLSARRPDAALLLGTRFGFRLAGRSTAFFPDDAKLIQVHSDAAELGRLRHVE FT LPIVADVGAALTTLRTAAAAETWPQRPAWIEAVTKAPAKMLDMFPNKQGPKGIHPFWAAEAAVRAAGPDAAIVLDGGEAA FT SWAAFHLRSNQPGHVQGVGYLGCLGTGPGQSIGAQLVDPDKRVMQITGDGAMGFHIQEFDTMSRHRLPICTIVLNNEIWG FT MSIHGQQIMYGANYSAISELRGTNYASVAAAFGCHAERVTEFDEIEPAIARAYASGQPSCIEIMIDPDVVHPVTVAALGT FT ISDEKREIMIPYYENIPIRPQA* " FT gene complement(123664..125412) FT /locus_tag="Rpal_0112" FT /colour=10 FT CDS complement(125453..126241) FT /locus_tag="Rpal_0113" FT /product="short-chain dehydrogenase/reductase SDR" FT /note="PFAM: short-chain dehydrogenase/reductase SDR; KR FT domain protein" FT /note="SPTR: Oxidoreductase, short chain FT dehydrogenase/reductase family - Hyphomonas neptunium FT (strain ATCC 15444)" FT /note="KEGG: hne:HNE_0924 oxidoreductase, short chain FT dehydrogenase/reductase family " FT /note="COGs: COG1028 Dehydrogenase with different FT specificities (related to short-chain alcohol FT dehydrogenase) category=Q" FT /note="InterPro IPR002198:IPR002347:IPR002424:IPR013968" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRFNGKVAVVTAAASGIGAATAARLAREGAYVYLSDIDQDALGRQAESLVDVAERISTVVADVTVPEQVSALIDGAARER FT GRLDILINNAGMGAFGRITEVTPEAWHRVFGICVDSIFHASRAAIPHLIKARGTIVNTASISGLFGDYGFAAYNAAKGAV FT INLTRNMALDYSRDGLRVNAVCPGLIATPLSLKLRDNAAVMAEYDRLIPLGRAGSPEEVAGAIAFLASDDASYITGVAFA FT VDGGLTARTGQPNFLGHLAPKP* " FT gene complement(125453..126241) FT /locus_tag="Rpal_0113" FT /colour=9 FT sig_peptide complement(126173..126241) FT /colour=11 FT /locus_tag="Rpal_0113" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.895 at FT residue 23" FT CDS 126442..127104 FT /locus_tag="Rpal_0114" FT /product="transcriptional regulator, TetR family" FT /note="PFAM: regulatory protein TetR" FT /note="SPTR: Transcriptional regulator, TetR family - FT Hyphomonas neptunium (strain ATCC 15444)" FT /note="KEGG: hne:HNE_2415 transcriptional regulator, TetR FT family " FT /note="InterPro IPR001647" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="LPPREQTREELRQKIIAGARALLSETESAEFSMRALAARANVAHMTPYNVFGSKQAVLLAVLDADMADFTRAVQERDVAD FT PLSELYEVVGLCAEFWFSEPVFYKTLYRELLDLKGAPHQATATPLRDGFWRRLTHALAEQGYLQSFVAEEPLSMNLRRIA FT LQAISVWIARDLSKREVEAELGYSISLALLGVTAPASSSLVLTRLLNYQAIIEEAGARDG* FT " FT gene 126442..127104 FT /locus_tag="Rpal_0114" FT /colour=11 FT CDS complement(127157..127945) FT /locus_tag="Rpal_0115" FT /product="protein of unknown function DUF81" FT /note="PFAM: protein of unknown function DUF81" FT /note="SPTR: Putative uncharacterized protein - FT Roseovarius sp. HTCC2601" FT /note="KEGG: mrd:Mrad2831_4756 protein of unknown function FT DUF81 " FT /note="InterPro IPR002781" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MHELIAEASASFLSTLPSPMAIVGVLSAVLAAALLRGFTGFGFALAAVPLMGMFMPPAKAVPVAVLLQLLGGLNDLRRNH FT RDAHWASLRWLIVGAVIGSPIGALALSVAPAPVARIVIATITAAAVVVLGRGFAIEKIPSRPVTTAVGMLCGLFNGLAAM FT PSPPAIVYYMSGPFRAVAVRASLLVFFLATSIAGFTSIALVGLATVNVLWLAAMALPVMMLGTWIGEQGFRRGTERLHRR FT VSIASLGGVALLSAAKGLSELM* " FT gene complement(127157..127945) FT /locus_tag="Rpal_0115" FT /colour=11 FT misc_feature complement(order(127256..127321,127343..127408,127439..127504,127541..127606,127619..127684,127745..127810,127841..127906)) FT /colour=11 FT /locus_tag="Rpal_0115" FT /note="7 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(127805..127945) FT /colour=11 FT /locus_tag="Rpal_0115" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.839) with cleavage site probability 0.586 at FT residue 47" FT CDS complement(127954..129465) FT /locus_tag="Rpal_0116" FT /product="Aldehyde Dehydrogenase_" FT /note="PFAM: Aldehyde Dehydrogenase_" FT /note="SPTR: Betaine-aldehyde dehydrogenase - Roseovarius FT sp. HTCC2601" FT /note="KEGG: mrd:Mrad2831_4757 aldehyde dehydrogenase " FT /note="COGs: COG1012 NAD-dependent aldehyde dehydrogenase FT category=C" FT /note="InterPro IPR015590:IPR016160" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MINIATRINPAIAPAVSEVISQLQARHLIGNTLVPSVGGATLDVIDPATGQVIGKAPAASGDDVARAVEAASAAFPGWAA FT TPARQRGKLIAAAASAIAERSDVIATVLALETGKAIRTECRGEVATAIDITTMYAGLASELKGETLPFDPQILTYTSREP FT LGVVAAILPWNVPLVLMMLKIAPALVAGNTVVVKASEEAPYATIEMARLMARLLPDGVLNVICGTGRDCGAALVEHPAVA FT KVTFTGSQAVGELIYQMAAKKIIPVSLELGGKSPMIVYPDADMARVVAGAIAGMRFTRQGQSCTAASRIYVHTTLIDAFV FT AALREAVSKLKIGDPLDEATDIGTVISPRQKAKVESYIDLGARTAGAKVDRCGELPGAAHLKDGLFLQPTIITGVPEDSP FT LMREEIFGPVVCVQPWDDEDDVIARANDSDFGLAATVWTNDLRSALRTVQRLDAGYVQVNQNLTIQPNLSYGGFRKSGLG FT KEASLEAMLEHFTKKKTVVIDMR* " FT gene complement(127954..129465) FT /locus_tag="Rpal_0116" FT /colour=3 FT CDS 129677..130084 FT /locus_tag="Rpal_0117" FT /product="protein of unknown function DUF1486" FT /note="PFAM: protein of unknown function DUF1486" FT /note="SPTR: Putative uncharacterized protein - FT Burkholderia phytofirmans PsJN" FT /note="KEGG: mrd:Mrad2831_4758 protein of unknown function FT DUF1486 " FT /note="InterPro IPR009959" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSDLDTQRLQTLDQLFDAFNRHDGAAVMAAMTDDIVFDAAAGPEACGRRIVGTADVRAAFETTFTTFPDVSWECTRHAVF FT GDRGISEWIFRATTKDGGRIEAEGVDLFGFRGNKICSKSAFRKDRPVLPPTGASA* " FT gene 129677..130084 FT /locus_tag="Rpal_0117" FT /colour=11 FT CDS 130081..131475 FT /locus_tag="Rpal_0118" FT /product="FAD dependent oxidoreductase" FT /note="PFAM: FAD dependent oxidoreductase" FT /note="SPTR: FAD dependent oxidoreductase - Burkholderia FT phymatum STM815" FT /note="KEGG: mrd:Mrad2831_4759 FAD dependent FT oxidoreductase " FT /note="COGs: COG0665 Glycine/D-amino acid oxidase FT (deaminating) category=E" FT /note="InterPro IPR006076" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MNKPVKTPPLAAYDPHYDPLVSEGPGRNRDYAPTYWTATCGPLPEDDGPISRDTDVDVAIVGSGFTGLASAVFLAREHGI FT KAAVLEANRVAWGCSTRNGGQGQNAAGRLTRSQWIERWGRDVALKLHAEISDGFETFEELIRQSPIDSEPQRGGHLYIAH FT RQRNFEKIAAEAKVLSEVFGEPTKVISADELRRDYVNEAEAVGATLEPRGTGVHPAKLAFGYQQMARDLGATVHPGSPVI FT EIEHRGGAFYLRTPGGTVKARAVGIATGAYTAPGLTPLLRGRCMPILSNSIVTRPLTPAELEATGFKTKLVLTDTRTLRY FT YYRLLPDNRIQIGSRSSITGADADAPKHLQLLIDGLHRKFPALQGIEIDYSWWGWVDVSHDMMPRIFQPDPAQKLVYALG FT YGGNGVSYSAQAGRRMAQMIAGQRFKGQDLPIFTSPLPTHSFSPFRRIGQRMLYRWYHFRDEAA* FT " FT gene 130081..131475 FT /locus_tag="Rpal_0118" FT /colour=10 FT CDS complement(131599..131952) FT /locus_tag="Rpal_0119" FT /product="hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Xanthobacter sp. (strain Py2)" FT /note="KEGG: xau:Xaut_4360 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MHPFRWQRSRQRSSALSFLKKAFYQIPVIGWLVKDAAHGSPEAPYFFLFNAVVVGAALIYTFGYPLVITVAVAGAFAGIA FT GLVVLTAGDAFDKRAKQPATDVRRAKTATVRPLKKAA* " FT gene complement(131599..131952) FT /locus_tag="Rpal_0119" FT /colour=13 FT misc_feature complement(order(131689..131754,131767..131823)) FT /colour=11 FT /locus_tag="Rpal_0119" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 132295..133356 FT /locus_tag="Rpal_0120" FT /product="dTDP-glucose 4,6-dehydratase" FT /note="TIGRFAM: dTDP-glucose 4,6-dehydratase" FT /note="PFAM: NAD-dependent epimerase/dehydratase; FT short-chain dehydrogenase/reductase SDR; 3-beta FT hydroxysteroid dehydrogenase/isomerase; polysaccharide FT biosynthesis protein CapD; dTDP-4-dehydrorhamnose FT reductase; Male sterility domain" FT /note="SPTR: dTDP-D-glucose-4,6-dehydratase - Azorhizobium FT caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)" FT /note="KEGG: azc:AZC_1833 dTDP-D-glucose-4,6-dehydratase " FT /note="COGs: COG1088 dTDP-D-glucose 4 6-dehydratase FT category=M" FT /note="InterPro FT IPR001509:IPR002198:IPR002225:IPR003869:IPR005888:IPR005913:IPR013120" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTKRFLVTGGAGFIGSAVVRRLIGTTPHEVLVVDKLTYAGNLDSLAPVSDDPRFRFVRADIVEQGTMRLLFEEFSPDVVM FT HLAAESHVDRSIDGPGDFIQTNIVGTYSLLQAALAHWRSLPAARKSGFRFHHISTDEVFGSLGAEGLFREDTPYQPKSPY FT SASKAGSDHLVRAWHHTYGLPVVITNCSNNYGPYHFPEKLIPLAIIKALHGEAIPVYGTGANVRDWLHVEDHADALLLAA FT ERGENGESYNIGGRNERTNLEVVQAICRLLDELAPDAAIGSRAKLISFVADRPGHDARYAIDASKVERELGWRARYNFDD FT GLRQTVQWYLDNRTWWERVRSGVYRGERLGVAV* " FT gene 132295..133356 FT /locus_tag="Rpal_0120" FT /colour=9 FT CDS 133382..133939 FT /locus_tag="Rpal_0121" FT /product="dTDP-4-dehydrorhamnose 3,5-epimerase" FT /EC_number="5.1.3.13" FT /note="TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase" FT /note="PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase" FT /note="PFAM: dTDP-4-dehydrorhamnose 35-epimerase related" FT /note="SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase - alpha FT proteobacterium BAL199" FT /note="KEGG: rru:Rru_B0038 dTDP-4-dehydrorhamnose FT 3,5-epimerase " FT /note="COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase FT category=M" FT /note="InterPro IPR000888" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MLTVTSTAIEAVKIITPRAFADSRGTFSETYNRQRFVDHGVALEFVQDNQSISAAVGTVRGLHFQSAPFAQDKLVRVAKG FT RILDVAVDLRRSSPTYGQWVAEELSAEDGKQLLIPIGFAHGFCTLEPDTVLAYKVTNYYSPPHDLGIAWNDPDLAVRWPV FT TADQAVLSDKDLKLPPFASLPNYFE* " FT gene 133382..133939 FT /locus_tag="Rpal_0121" FT /colour=9 FT CDS 133944..134837 FT /locus_tag="Rpal_0122" FT /product="dTDP-4-dehydrorhamnose reductase" FT /EC_number="1.1.1.133" FT /note="PRIAM: dTDP-4-dehydrorhamnose reductase" FT /note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta FT hydroxysteroid dehydrogenase/isomerase; FT dTDP-4-dehydrorhamnose reductase; Male sterility domain" FT /note="SPTR: Putative dTDP-4-dehydrorhamnose reductase - FT Rhizobium leguminosarum bv. viciae (strain 3841)" FT /note="KEGG: rle:RL1624 putative dTDP-4-dehydrorhamnose FT reductase " FT /note="COGs: COG1091 dTDP-4-dehydrorhamnose reductase FT category=M" FT /note="InterPro IPR001509:IPR002225:IPR005913:IPR013120" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VRIVVTGRHGQVAQALHERAAGTNAEIILLARPEIDLTRPSEIEGVLIALKPDAVVNAAAYTAVDQAESEHDLAYAINAE FT GAGAVARTAAKLGVPMVQLSTDYVFDGTAEQPYRETDPTNPLSAYGASKLAGERAVAEAAPDHAVLRTSWVYSPFGKNFV FT RTMLALARQRDEVRVVCDQVGSPTSALDIADGVLGVVRNLLAEPTRSDMRGIFHMTADGTATWAAFAEAIFAASRAAGGP FT SAKVIPIPTTEYPTPAKRPTNSRLDSSALATAHGIRLPHWRQSLQPCIERLLAQDAN* FT " FT gene 133944..134837 FT /locus_tag="Rpal_0122" FT /colour=9 FT CDS 134839..135714 FT /locus_tag="Rpal_0123" FT /product="glucose-1-phosphate thymidylyltransferase" FT /note="TIGRFAM: glucose-1-phosphate thymidylyltransferase" FT /note="PFAM: Nucleotidyl transferase" FT /note="SPTR: Glucose-1-phosphate thymidylyltransferase - FT Caulobacter crescentus (Caulobacter vibrioides)" FT /note="KEGG: ccr:CC_1141 glucose-1-phosphate FT thymidylyltransferase " FT /note="COGs: COG1209 dTDP-glucose pyrophosphorylase FT category=M" FT /note="InterPro IPR005835:IPR005907" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MITKGIILAGGSGTRLHPMTAAVSKQLMPIYDKPLIYYPLATLMMAGIRDILVISTPADLPRFHQLLGDGASWGMSFSYA FT EQPKPEGLAQAFIIGADFVAGQPSALVLGDNLFYGHDLIPLLRNAARHPEGATVFAYQVSDPERYGVVEFDSDQVARSIE FT EKPARPRSNWAVTGLYFYDQDVVEIAANLKPSARGELEITDVNRTYLERGKLRVEKMGRGFAWLDTGTPDSLIEAGEFVR FT VLEKRQGFKICCPEEIAFRFGWIDARQLERLAQPLAKSNYGGYLLKLAASP* " FT gene 134839..135714 FT /locus_tag="Rpal_0123" FT /colour=9 FT CDS 135802..136692 FT /locus_tag="Rpal_0124" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / FT ORS 571)" FT /note="KEGG: azc:AZC_3956 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VPKKLSDYTLADWTHLRPLSQGLKTARYNRIDRRYRQQPAKVGDPAAVAKMITGRRALFTVAYQDPQAIDLQIPLIRLFV FT PGALYIVVDNSPDDDRAAEIERISAAHGVPYLRAPENPWQKSSRSHGIVLNWIWHNIIRPGAPEMFGLLDHDLFPTAPDD FT PFAPLATQDVYGYVRTTEPPSERWFLWAGFTMMRFSAVRDLPLDFGQDWFLGLDTGGGNWGPLYSKLDLAKLQQSPSRFV FT PYREGLATYDGPFQWCGTWLHEVGQMGEPEIMRDKRRVVVELLAPHLEAARNLPPR* FT " FT gene 135802..136692 FT /locus_tag="Rpal_0124" FT /colour=13 FT CDS 136785..139064 FT /locus_tag="Rpal_0125" FT /product="GAF sensor signal transduction histidine kinase" FT /note="PFAM: GAF domain protein; ATP-binding region ATPase FT domain protein; histidine kinase A domain protein; FT Phytochrome central region domain protein; PAS fold-2 FT domain protein" FT /note="SPTR: Sensor protein - Anabaena variabilis (strain FT ATCC 29413 / PCC 7937)" FT /note="KEGG: ava:Ava_1003 multi-sensor signal transduction FT histidine kinase " FT /note="COGs: COG4251 Bacteriophytochrome (light-regulated FT signal transduction histidine kinase) category=T" FT /note="InterPro FT IPR001294:IPR003018:IPR003594:IPR003661:IPR004358:IPR005467:IPR013515:IPR013654:IPR016132" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MGEADSGGIVTARNVDLSSCDRELVQYPEAIQPHGAMLTVDEQSDRVLHASANCAAFIGKPPEAVIGAPIAAVLGAGWHE FT LLGSLHRMPLDSGPVNIARESFLGSDQGWHLFAHRCGGLIILEFEKAEPEAAGTTSNLYSEVRADLAALQATEGVQAFFD FT LAVERIRSFTGYDRVMAYRFAEDGSGQVIAEARRDDLEPYLGLHYPATDIPAPARRLFALSWVRHLPDVGYTPVPLLAAK FT SPLVTGPVDMSFASLRSVSVMYTGYLKNMGVQSTLVMPLVKEGRLWGLISAMHHAAPRHISHQMRMAAEFLAHTLSLLMS FT AKEDAEQFERSSARKAAAEALTRLLDSEADIGAALHAAGALDLLSALIDAGGVVVQTGDEVATRGEAPAAAPLHELTSWL FT RERARPVFATDRLPSLDPAAQAIASQASGVLALRPLPDQPILIAWLRPEQIEDVQWAGDPRKPVEISEADGMQRLRPRNS FT FALWKESVQGRAVPWRDDEKDAATQLAAAIAEIAAARKGRIERINRALDASHSELSRYTDVASAELKEHLRGIHHLTTSL FT RRRQGEVLDEEGRQQVATILKLTQRMDALVDALLDRSRGGSEAASETVDLDAVVDDALAPFARRIAEDRIDVRRPMRLGT FT AQGHREWIGEVFTNLIGNAIRYNDKPERWIEIGVEDGSPPRYYVRDNGIGIADTDQQLVFQMFHRVDQSEQKAEGAGVGL FT AMTRRIVAHHGGRIWVQSRLGDGATFYFTLAPDEEQHDA* " FT gene 136785..139064 FT /locus_tag="Rpal_0125" FT /colour=15 FT CDS 139057..140697 FT /locus_tag="Rpal_0126" FT /product="TrkA-N domain protein" FT /note="PFAM: TrkA-N domain protein; Ion transport 2 domain FT protein " FT /note="SPTR: Putative KTN NAD-binding domain involved with FT K+ transport - Azoarcus sp. (strain EbN1) (Aromatoleum FT aromaticum (strain EbN1))" FT /note="KEGG: eba:ebA5259 putative KTN NAD-binding domain FT involved with K+ transport precursor " FT /note="COGs: COG0569 K+ transport systems NAD-binding FT component category=P" FT /note="InterPro IPR003148:IPR006037:IPR013099" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRSIVRLGLSRLRPPLILLALVFAASTLGLMLIPGVDAQGHPWRMTLFDAFYFVTYTATTIGFGELPHPFTNQQRGFVTV FT IIYLSVIGWAWLLGSLLSLVQEKAFQQALVDRRFRRAVEKLDQPFYLVCGLGDTGMTVVHALRQLGCRLIAIDKDERTVQ FT QLEIEGLNGKAPALIADARSPETLTAAGLMKAECKGVLTLCNDDEVNLAVAITASILRPGLPVIGRADTSATAASMSSLG FT THRVINPFREFAEHLTLAMRAPDVYRLIAWLTSAPGAYLFPSAPARMPAAPGHWIVCGYGRFGREVVAAVQRGGFTSAVI FT DPVGSRIDGHHAVHGRGADVAALHEAGIGHASGIVAGTDDDAENLAIALAARRLKPEIFVITRQNQRSSRMLFAKLGADI FT TMVPSEIIANQCLAALRTPLLADFLEAARHQDAFWAFTLSERLRAALGNETPQFWSTVLDADHAPNLVGSDGALKQPLTV FT AELCVDPEHQDAAHPLRRRAIVLRLIRGDSTIETPADDAVLQPGDTLLCVGSAAVRATQQRRLGGR* FT " FT sig_peptide 139057..139173 FT /colour=11 FT /locus_tag="Rpal_0126" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.991) with cleavage site probability 0.820 at FT residue 39" FT gene 139057..140697 FT /locus_tag="Rpal_0126" FT /colour=9 FT misc_feature order(139093..139161,139189..139248,139285..139353) FT /colour=11 FT /locus_tag="Rpal_0126" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(140704..141528) FT /locus_tag="Rpal_0127" FT /product="metallophosphoesterase" FT /note="PFAM: metallophosphoesterase" FT /note="SPTR: Bll4141 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll4141 hypothetical protein " FT /note="COGs: COG1409 phosphohydrolase category=R" FT /note="InterPro IPR004843" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MKFVVLTDTHFVARGRRIYGLDPAERLSAAVARINREHPDIAFVIVTGDLAHWGEEPAYDNLASVLAGLRAPTILMMGNH FT DKREAFAKFFPGVPRDASGFVQTVQVFEAATIVTLDTLNEAAPNHEGLLCEARLAFLEHALAEAPADRPLLLFQHHPPFD FT TGLRYMDTIRLANPDAEWEVIARTRKPDYLFMGHLHRPISGVWRGIPFHIQRGLAHQVAFDLVAEGHIPGSHEPPDYAHV FT SVEADRIVIHQCSFMYDGPLFSLHDSVALHRVSF* " FT gene complement(140704..141528) FT /locus_tag="Rpal_0127" FT /colour=11 FT CDS complement(141525..142349) FT /locus_tag="Rpal_0128" FT /product="metallophosphoesterase" FT /note="PFAM: metallophosphoesterase" FT /note="SPTR: 3',5'-cyclic-nucleotide phosphodiesterase; FT CpdA - Rhizobium loti (Mesorhizobium loti)" FT /note="KEGG: mlo:mll3631 3',5'-cyclic-nucleotide FT phosphodiesterase, CpdA " FT /note="COGs: COG1409 phosphohydrolase category=R" FT /note="InterPro IPR004843" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MKLIHLSDIHLTTPGGTIGGRNPRLNFERALTHILRDHHDAELMVITGDLSDWGDAEDYRWLKAQLGAFPIPVRLCIGNH FT DRRENFLSVFPEFADDDGLVQGVCDTPAGRCLLLDTAEAGTHAGRYCETRRAWLTRQLAEHPGPFLLFMHHNPMPTHLGP FT MDQIRLLDDGAFGQIVGRHRDRIRHIFFGHCHLPLAGSVAGVPVSSLRGTNHASYPLFSERRMLSASDLPESYGVVFFGD FT DYVTVHMVEFGYTGEVRVEGSPDYNAWNRETMLR* " FT gene complement(141525..142349) FT /locus_tag="Rpal_0128" FT /colour=11 FT CDS complement(142414..143694) FT /locus_tag="Rpal_0129" FT /product="extracellular solute-binding protein family 1" FT /note="PFAM: extracellular solute-binding protein family FT 1" FT /note="SPTR: GLYCEROL-3-PHOSPHATE-BINDING PERIPLASMIC FT PROTEIN - Brucella melitensis" FT /note="KEGG: bcs:BCAN_B1211 hypothetical protein " FT /note="COGs: COG1653 ABC-type sugar transport system FT periplasmic component category=G" FT /note="InterPro IPR006059" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MLKRWIAAAAMTLVAGIAHAQQQTEVVLQFPYPELFSETHKRIAEEFAKVHPEIKVTFRAPYESYEEATQKVLREAVTNQ FT LPDVTFQGLNRIRVLVDKTIPAPLDGYIAAEKDFDKQGFHQAMYDIGTASGKVYALPFAISLPIVYVNLDLVKQAGGDVN FT NLPTTWDGLLDLAKKVKALGPDTNGITYAWDITGNWLWQAPVFARGGTMLNADETKVAFDGPEGQFAMRTIARLVTEGGM FT PNLDQPSMRATFAAGKTGIHITSTSDLKKTTDMIGGKFALKTIAFPDVVKPNGRLPAGGNVVLITAKDKAKRDAAWEVVK FT FWTGPKGAAIMAETTGYMPPNKVANDVYLKDFYAKNPNNYTAVSQLALLTKWYAFPGDNGLKITDVIKDHLNSIVSGARA FT KEPDAVLADMTRDVQNLLPKTVGAAK* " FT gene complement(142414..143694) FT /locus_tag="Rpal_0129" FT /colour=4 FT sig_peptide complement(143632..143694) FT /colour=11 FT /locus_tag="Rpal_0129" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 1.000 at FT residue 21" FT CDS complement(143717..144553) FT /locus_tag="Rpal_0130" FT /product="binding-protein-dependent transport systems FT inner membrane component" FT /note="PFAM: binding-protein-dependent transport systems FT inner membrane component" FT /note="SPTR: Lactose transport system permease protein FT lacG - Brucella canis ATCC 23365" FT /note="KEGG: bcs:BCAN_B1212 lactose transport system FT permease protein LacG " FT /note="COGs: COG0395 ABC-type sugar transport system FT permease component category=G" FT /note="InterPro IPR000515" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MSAARPSLIRSSFRHAALMVGAVLMLAPFVWMLSTASKPPEEIYSSDLHLIPHHFALWENLRIAFGKADLGRFLLNGVIV FT TVAIFTCQVLIALPAAYALAKLRFLGRKALFALVLFGILIPPQATAIPVFLLLHQLGALDSYAALVLPFTISVFGIFLMR FT QFFMTVPDDLLDAARMDGMSEFAIVWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSQQYYTPPLAVAHFRNAEAG FT TSYGPLMAAAIVIITPLVVAFLLAQRRFIEGITLTGLK* " FT gene complement(143717..144553) FT /locus_tag="Rpal_0130" FT /colour=4 FT misc_feature complement(order(143762..143827,143936..144001,144062..144127,144158..144223,144263..144328,144449..144514)) FT /colour=11 FT /locus_tag="Rpal_0130" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(144440..144553) FT /colour=11 FT /locus_tag="Rpal_0130" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.987) with cleavage site probability 0.506 at FT residue 38" FT CDS complement(144550..145509) FT /locus_tag="Rpal_0131" FT /product="binding-protein-dependent transport systems FT inner membrane component" FT /note="PFAM: binding-protein-dependent transport systems FT inner membrane component" FT /note="SPTR: Sugar ABC transporter, permease protein, FT putative - Brucella suis" FT /note="KEGG: oan:Oant_1668 binding-protein-dependent FT transport systems inner membrane component " FT /note="COGs: COG1175 ABC-type sugar transport systems FT permease components category=G" FT /note="InterPro IPR000515" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MSEVAMSDAAVSLRDLDALTTARASAKPRRRGRGTVAYGLVAPAFTLMLLMLLGPLAGVIALSFTDYQLGAPSFAWIGLA FT NYQQLFADRVFWISLINTLTYAVIVVPGSVALGLGVAMLIESGTHLRAFYRTIYFLPVMATLIAMAIVWEFMLHPQFGLV FT NGLIKMVGLAPHPWLQDRGTALYALCAIGIWQAVGFNMVLFLAGLMSIPKHLYDAAEIDGAASAWSRFRLVTWPMLGPVT FT LFVVVITGIRSFQVFDTVHVLTKGGPSKSTEVLIHTMYMEGFEFFRSGYAAAVTVVFLGLVLLLTLVKSRLAAKQVHYA* FT " FT gene complement(144550..145509) FT /locus_tag="Rpal_0131" FT /colour=4 FT misc_feature complement(order(144589..144654,144754..144819,144901..144966,145054..145110,145150..145215,145327..145392)) FT /colour=11 FT /locus_tag="Rpal_0131" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(145502..146656) FT /locus_tag="Rpal_0132" FT /product="ABC transporter related" FT /note="PFAM: ABC transporter related; TOBE domain protein; FT Transport-associated OB domain protein" FT /note="SMART: AAA ATPase" FT /note="SPTR: Sugar ABC transporter, ATP-binding protein - FT Oceanicola batsensis HTCC2597" FT /note="KEGG: sil:SPO1823 sugar ABC transporter, FT ATP-binding protein " FT /note="COGs: COG3839 ABC-type sugar transport systems FT ATPase components category=G" FT /note="InterPro IPR003439:IPR003593:IPR005116:IPR013611" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MAKIELSAIRKSFGDTEVLKGVDLSIHDGEFVSLVGPSGCGKSTLLRVIAGLEPQSSGEVKIGGVAVDHVRPSARNLAMV FT FQSYALYPHLSVFDNIAVPLRMKRLSALERASLLGRLIPNRYRVERGIRADVERVASQLEISPLLARKPGQLSGGQRQRV FT AVGRALVREPVGFLFDEPLSNLDAKLRVHMRAEIAQLHRRLKATFVYVTHDQAEAMTMSGRIAVMIGGELVQVGTPSDVY FT DNPRDIRVAEFIGSPKINVLPGAVQTDGRFVMLDRVLAARATAGAGPCRVAIRPERLSLGGGDLSGVVVHVENMGAEAFV FT HLSCDGLTDPVVIRLDDPLRLPAIGSTQRFGFAPEAIRLFDAGGKRIAIRTEASVEIIREVAHV* FT " FT gene complement(145502..146656) FT /locus_tag="Rpal_0132" FT /colour=4 FT CDS 146784..147662 FT /locus_tag="Rpal_0133" FT /product="transcriptional regulator, LysR family" FT /note="PFAM: regulatory protein LysR; LysR FT substrate-binding" FT /note="SPTR: Transcriptional regulator, LysR family FT protein - Labrenzia aggregata IAM 12614" FT /note="KEGG: sme:SMb21535 putative transcriptional FT regulator, LysR family protein " FT /note="COGs: COG0583 Transcriptional regulator category=K" FT /note="InterPro IPR000847:IPR005119" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MALTSARVRAVNAVFDAGSFAAAARRIGVTQSAVAQSVRELEGEFGVTLFERHGANLIPTSLCRQLYGATSRMQAVETDA FT LSILSQREELAGGELRVGLGNSMPGMALIATFKQMYPKVQVAIEIGSWSAIVAAVVDQRVDIGVLPDVPADRRFRREICL FT EQRVVALCHPSHPLKKKQQVPIAELMRYPLVFRTRDSSTQRAVDRAFRAASLRPIPSIVVNTREGMLEAVANHLGVGFMW FT EHGSSRVDRIAKVPIAELDAESPECIFALAGKKGRLVELFFLANGAHSPPRE* " FT gene 146784..147662 FT /locus_tag="Rpal_0133" FT /colour=6 FT CDS complement(147668..148363) FT /locus_tag="Rpal_0134" FT /product="ABC transporter related" FT /note="PFAM: ABC transporter related" FT /note="SMART: AAA ATPase" FT /note="SPTR: Sulfate ABC transporter, ATPase subunit - FT Sinorhizobium medicae (strain WSM419) (Ensifer medicae)" FT /note="KEGG: smd:Smed_4541 sulfate ABC transporter, ATPase FT subunit " FT /note="COGs: COG3842 ABC-type spermidine/putrescine FT transport systems ATPase components category=E" FT /note="InterPro IPR003439:IPR003593" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSQPLLQFRDVQFGYQAPLLHGISFDVAAGSITAVMGPSGSGKSTLLALAAGLLTPDAGAVHRRSARLGMVFQDPALLPW FT RTALDNVAFPLIALGLRQRERRDRARAMLAAVGLSGDDAGKYSRQLSGGMRQRVALARALVIEPDLLLCDEPFSALDALV FT RAELWRIVRDIHDRSGLTMLIVTHDGPEAMQCDRLAILSAGRLEQVGAPAEILRHPASDVVRTFVAAATGN* FT " FT gene complement(147668..148363) FT /locus_tag="Rpal_0134" FT /colour=10 FT CDS complement(148360..149133) FT /locus_tag="Rpal_0135" FT /product="binding-protein-dependent transport systems FT inner membrane component" FT /note="PFAM: binding-protein-dependent transport systems FT inner membrane component" FT /note="SPTR: Binding-protein-dependent transport systems FT inner membrane component precursor - Xanthobacter sp. FT (strain Py2)" FT /note="KEGG: xau:Xaut_4037 binding-protein-dependent FT transport systems inner membrane component " FT /note="COGs: COG0600 ABC-type FT nitrate/sulfonate/bicarbonate transport system permease FT component category=P" FT /note="InterPro IPR000515" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRGSARVSWAWSLVGIALLLALWEAGHRAYGPLVLPGLGDTVLTLWRMIRAGQVGPALLETAGNAGLGWIIGVLIGSCAG FT MLAGLREEAQRALQPVAIILLGVPAIAWVVLALLWFGGRWAVVVTVAAATGPMLFAAALEGVRSLDGTLARMAQVYQVPL FT SARLTEVYGPQLLSHLFPALVTTLAMSWKVAVMAELLAGAGGIGDGLATARAHVDTAETMAWVVVVVGVLIVVDVGVLQP FT LQRRLWLWRDDERGGGR* " FT gene complement(148360..149133) FT /locus_tag="Rpal_0135" FT /colour=9 FT misc_feature complement(order(148411..148476,148552..148617,148708..148773,148786..148842,148879..148935,149056..149112)) FT /colour=11 FT /locus_tag="Rpal_0135" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(149123..150115) FT /locus_tag="Rpal_0136" FT /product="ABC transporter substrate-binding protein" FT /note="SPTR: ABC transporter substrate-binding protein - FT Symbiobacterium thermophilum" FT /note="KEGG: sth:STH760 ABC transporter substrate-binding FT protein " FT /note="COGs: COG0715 ABC-type FT nitrate/sulfonate/bicarbonate transport systems FT periplasmic components category=P" FT /note="InterPro IPR006311" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSPPQHLIPTRRDVVRGLAALPALGLTRTFAAEPLTLWGIPATPSALFVRAVASEQLQQAAPGIRFQLWKSTDQMRAGIA FT SGQFRLFATSTYAAANFFNRGAGTRMLNVVTWGVLYVMARDPAIRSVADLAGRSILLSNKNEAPDLLFRLVLRWAGLDPD FT RDVRCEYVGSPGEAVPLFLAGRSDVAVLHEPAATTALLRAKQEGKPVYRVLDIAELYGRHAGRGPRIPQVGLAVSADLLD FT TQPGLVAAVQAACVEASTWIAAHPAEAAELAAPALGLPAEVIAASLPHVRLDVVPARQARDDIEMYFKNLMELDPGIVGG FT RLPDAAFYAG* " FT gene complement(149123..150115) FT /locus_tag="Rpal_0136" FT /colour=9 FT sig_peptide complement(150020..150115) FT /colour=11 FT /locus_tag="Rpal_0136" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.793) with cleavage site probability 0.793 at FT residue 32" FT CDS complement(150131..151990) FT /locus_tag="Rpal_0137" FT /product="hydrogenase, Fe-only" FT /note="TIGRFAM: hydrogenase, Fe-only" FT /note="PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur FT binding domain protein; iron hydrogenase small subunit; FT hydrogenase large subunit domain protein" FT /note="SPTR: [Fe] hydrogenase gamma - Desulfovibrio FT vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)" FT /note="KEGG: dvu:DVU1771 [Fe] hydrogenase gamma " FT /note="COGs: COG4624 Iron only hydrogenase large subunit FT C-terminal domain category=R" FT /note="InterPro FT IPR001041:IPR001450:IPR003149:IPR004108:IPR013352" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MCTPDQASLSARDPAEATITLSINGVACAGFANETILSCARRYDVYIPTLCELEDIDHTPGACRVCLVEILQAGKDTPQI FT VTACNTPVRDGMEVQTRSKKARDMQRLQVELLMADHLQDCATCIRHGSCELQDLAQFVGLQQNRFFDRERTESRPVDHSS FT PSMVRDMRRCVRCQRCVAICRYHQKIDALAIEGSGLERMVALRDADGYPNSVCVSCGQCVLVCPTGALGERDETDRALDY FT ICDPEVVTVVQFAPAVRVAFGEEFGLPAGTNVEGQIIAACRKLGVDVVLDTNFAADVVIMEEGAELLARLKQGRRPTFTS FT CCPAWINFAEIHYPDVLPLLSSTKSPQQVLSTIAKSYLPAQLGVPAERIRVISIMPCIAKKDEAVRPQMVHDGQPETDLV FT LTTREFARLLRREGIDLKDLPSSQFDRPFLSAYSGAGAIFGTTGGVMEAAVRTIYALVNGRELDRIELTQLRGFEGLREA FT TVDLGGPVGEVKVAMVHGLGDTRRLVESVLSGEANYDFIEVMACPGGCVDGGGSLRSKKAYLPLALKRRETIYNVDRAAK FT VRQSHNNPQVQVLYRELLQAPNSEIAHRLLHTHYASRKRELQHTVKEIWDDLTMSTILY* FT " FT gene complement(150131..151990) FT /locus_tag="Rpal_0137" FT /colour=11 FT CDS complement(151995..153986) FT /locus_tag="Rpal_0138" FT /product="FAD-dependent pyridine nucleotide-disulphide FT oxidoreductase" FT /note="PFAM: FAD-dependent pyridine nucleotide-disulphide FT oxidoreductase" FT /note="SPTR: FAD-dependent pyridine nucleotide-disulphide FT oxidoreductase - Desulfovibrio vulgaris subsp. vulgaris FT (strain DP4)" FT /note="KEGG: dvl:Dvul_1383 FAD-dependent pyridine FT nucleotide-disulphide oxidoreductase " FT /note="COGs: COG0493 NADPH-dependent glutamate synthase FT beta chain and related oxidoreductase category=E" FT /note="InterPro IPR000103:IPR000759:IPR001327:IPR013027" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MTQVVYGVWDGVAYDSRAAEALAANYALANFDEFDEGNAIRAFIADRGFFVFDPTVSLVDALFHYLKAAAEQSCGACTPC FT RIGTVLVRDALDQMRRGLDAALTLDDIVMLGEQIRQTSLCGLGQTCAVALLAALRDFRGRIEQELAQHRPIPAQHGMAYV FT TAPCIEACPSKVNVPRYIDYIRDGKPENSLGVLLQKYPMAATCGRVCVRYCEQACRRKFVDEAVGIKTLKRYVADQQSGP FT HALKFTRDMIRKPLADGMRVAVVGAGPAGISCAYHLLLRGYHVDVFDKAGQAGGMAQIGIPSYRLPKDTLALETDIIVDL FT GGRFLFDQRLGRDFSVDDLFARGYRAVFLGLGCQQGARLGVDGEDAAHGGYFSGIDFLLKVHDHVDGIAPLVLQGEVVVV FT GGGNVAMDCVRSAIRLGAEKVHVVYRRTLADMPADPAEIEAARAEGVEFHVLTAPAEIVTDHGKVTGVVLTRMQASEPDA FT GGRRSVKPVPGSETSMRCDVLIAAIGQQVEDGPLIESDGIAFDRWRCVATDRVLATSRPGVFAGGDCVTGPSTLVYAMAA FT GLKAARNIDDWIQRGSVRFFKRSRMRKLIADNHMLANEIVAAPVRNAYRVHNPEIDPELRKHMFGEVEQTIDARAAYAET FT QRCMRCYRVYSVVTKHPIPEGAA* " FT gene complement(151995..153986) FT /locus_tag="Rpal_0138" FT /colour=10 FT CDS complement(154156..155865) FT /locus_tag="Rpal_0139" FT /product="putative methyl-accepting chemotaxis sensory FT transducer" FT /note="SPTR: Blr2350 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr2350 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VSSLKHPIADAVASIELVASRIETTFAQVGGQLGEGHGIFQGLNEALADLARELSSAQIEGASGALRDIAGRLKSLADTL FT PAESALLDQLRRNVAEAGALLKQLLKHVEMITTIARSAKIESASLEGDREGFIAFTREAYDLGRAVQSSIEACVKDQQLL FT AAAVETTWGRQSEFERRYRPQLGASGGELMSAFADLGRQRNDSVGVAELAGSSARTISDVVGRSIISLQAGDSTRQRLEH FT VCEGLRRAADPEPTLVPDMTEVQPLPRLLVNLEAVQLHDTQQEFDAGIGDIVRALSTILTEVATLVEKGRSLHGGREGGS FT ASFLSRVRQTLAQASSLIAMCEDGGRSIDEALSVVENTLEKFRDAIANLSDSVVDISLIGMNAGLRAGHLGAKGRAFVVI FT AHEMKLTADQMTGAAVRLRPLLSEIAKVGDDLRKSRVSSDQTKLTSMENAILQTLHDVEAGNDRLGGLIGRLIEEGAKFD FT AVMNGAREQMTSLGSSASTLPTVAKCLEDAVGDLGRASFGDQDEAVLDELYARYTMERERDVHRQFLLPFGITAKQAAPA FT ANDCDFELF* " FT gene complement(154156..155865) FT /locus_tag="Rpal_0139" FT /colour=13 FT CDS complement(155870..156961) FT /locus_tag="Rpal_0140" FT /product="response regulator receiver modulated CheB FT methylesterase" FT /EC_number="3.1.1.61" FT /note="PRIAM: Protein-glutamate methylesterase" FT /note="PFAM: CheB methylesterase; response regulator FT receiver" FT /note="SPTR: Q89SQ1 Chemotaxis response regulator FT protein-glutamate methylesterase of group 3 operon (EC FT 3.1.1.61). Bradyrhizobium japonicum." FT /note="KEGG: bja:blr2349 chemotaxis two-component response FT regulator " FT /note="COGs: COG2201 Chemotaxis response regulator FT containing a CheY-like receiver domain and a FT methylesterase domain category=N" FT /note="InterPro IPR000673:IPR001789" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MAKQKIRVLIVDDSASVRQVLGTILAEDPEIEVIGTASDPFVAAKRLQNELPDVILLDIEMPRMDGITFLRKIMAQHPIP FT VVICSSLTPEGSDLMFEALEAGAVDIVPKPRVDTRQALMESSGRLREAIKSAARARVRPRAARKVIEQKLTADAIIPPPV FT AGRSRPTTERIVCIGVSTGGTEALYDVLEVLPPNCPGILIVQHMPQGFTAAFAKRLNAGCQINVKEAEDGDPVLPGWAYI FT APGARHMLLVRSGLRYQIAIKDGPPVSRHRPSADVLFRSAAQYAGANALGIIMTGMGDDGARGLLEMRKLGAYTCAQDEE FT SCVVFGMPKEAIACGAVEKVVSLNQIPREIMAWQQAKQPASAD* " FT gene complement(155870..156961) FT /locus_tag="Rpal_0140" FT /colour=9 FT CDS complement(156982..157824) FT /locus_tag="Rpal_0141" FT /product="MCP methyltransferase, CheR-type" FT /EC_number="2.1.1.80" FT /note="PRIAM: Protein-glutamate O-methyltransferase" FT /note="PFAM: MCP methyltransferase CheR-type" FT /note="SPTR: Protein-glutamate O-methyltransferase - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:blr2348 protein-glutamate FT O-methyltransferase " FT /note="COGs: COG1352 Methylase of chemotaxis FT methyl-accepting protein category=N" FT /note="InterPro IPR000780" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MVHAKRQLSDRQFRSLAELIEDQVGIKMPNAKRLMLEGRLHKRVRALNYSGVSEYVDNLFDKAVLDDELTHLIDVVTTNK FT TDFFREPQHFDFLKTVAVPELLKLPNRKSNDLKVWSAACSTGMEAYTTAMVLDDMVRAGARFQFRILGTDISTAVLRVAT FT AAIYNREVTAPVPPQFVERYFLTSRDRSREEVRVVPELRRLTNFTRMNLMDSSYPVDRDVDVIFCRNVLIYFDRETQRKV FT VEQLCSHLRPGGYLLVGHSESMIHSALPKLRQVQPTVFKL* " FT gene complement(156982..157824) FT /locus_tag="Rpal_0141" FT /colour=9 FT CDS complement(157985..160186) FT /locus_tag="Rpal_0142" FT /product="methyl-accepting chemotaxis sensory transducer" FT /note="PFAM: histidine kinase HAMP region domain protein; FT chemotaxis sensory transducer" FT /note="SPTR: Putative methyl-accepting chemotaxis protein FT - Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_7837 putative methyl-accepting FT chemotaxis protein (MCP) " FT /note="COGs: COG0840 Methyl-accepting chemotaxis protein FT category=N" FT /note="InterPro IPR003660:IPR004089" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRLTVKAKLAGAFGVVILLSAITGGIAYVKLTQLAETSEGLVSRSQRIDKAGELQNNILYQTRAQRDIIIASTEAELQKV FT ADEVKQYRKDALRIRDEIAAVATEAGKRMIEKFSTAYDKMNATEDQIIKFGTLNSNNRGAQLWTSEGAPVVKDWSEAVDS FT SLAEARKLPVSAERANALISILSIRADGEAVQKDLALSFYASNLEDLSSTIKALGDATERLRSSSQQSVAALSAVGLSSS FT AITSQSERFAKIAGRVSDIVKEGGNIRAAALAGTEGRATSMAAIQAATDYVNYVKKAMAEMSEQAASDAANAKLLLISIV FT IASLLAAVASALWIAINISRGLAQAVELANAVAIGDLSHKINSTSDDEVGDLVKSLNAMTANLNATAGVADEIARGNLTI FT EAKRLSEKDTLGIALEQMVEKLRQIVSEALTAAQNVSAGSQELSASAEQLSQGATEQASSAEEASSSMEEMAANIKQNAE FT NASQTEKIAAQSAKDAEASGTAVGRAVQAMQTIAEKITIVQEIARQTDLLALNAAVEAARAGEHGKGFAVVASEVRKLAE FT RSQASATEIGELSGETVKVAQEAGEMLAKLVPDIKKTSELVQEISSACREQDVGSSQINQAIQQLDKVGQQNASASEQVS FT STSEELASQAEQLQSTIAFFRIDQDKAKAHGAPIDKAVNQLRAKAAHMASVDRSNKKPQAAKPQRQLKAAGGGGGFAFAL FT GDGEDDRDADFQR* " FT gene complement(157985..160186) FT /locus_tag="Rpal_0142" FT /colour=9 FT misc_feature complement(order(159179..159244,160100..160156)) FT /colour=11 FT /locus_tag="Rpal_0142" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(160097..160186) FT /colour=11 FT /locus_tag="Rpal_0142" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.955) with cleavage site probability 0.585 at FT residue 30" FT CDS complement(160253..160741) FT /locus_tag="Rpal_0143" FT /product="CheW protein" FT /note="PFAM: CheW domain protein" FT /note="SPTR: Chemotaxis protein cheW - Bradyrhizobium sp. FT (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_7835 chemotaxis protein CheW " FT /note="COGs: COG0835 Chemotaxis signal transduction FT protein category=N" FT /note="InterPro IPR002545" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MAETAQYLTLGLAGETFGMAIRNVREILDMRPISRLPHAPEFMLGMIDVRGTGYPILDLRLKLDLPAVPPTEATRIIILD FT VPVAGRVVGVGFVADCVYEVTDIEESSLEQVPDVGGKWKSDYIAGIGRKGDRFVIIFDLARLMAGTDVSAGAAETPSNDL FT AA* " FT gene complement(160253..160741) FT /locus_tag="Rpal_0143" FT /colour=9 FT CDS complement(160802..161272) FT /locus_tag="Rpal_0144" FT /product="CheW protein" FT /note="PFAM: CheW domain protein" FT /note="SPTR: CheWII protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr2344 probable chemotaxis protein " FT /note="COGs: COG0835 Chemotaxis signal transduction FT protein category=N" FT /note="InterPro IPR002545" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSSDRVQGATDGDADAMQVVMIGLGDEKFAIDAGLVREIIDPIPATKVAGAKAFVPGVINVRGNVIPFADLRIRFGMPVQ FT THTADSRIVVLEVRLDNEAVLVGVSADRVYEVTEISRTDVQQTPRVGMHWKPEYIRFITKWRDEFVVVPNMERILN* FT " FT gene complement(160802..161272) FT /locus_tag="Rpal_0144" FT /colour=9 FT CDS complement(161272..163338) FT /locus_tag="Rpal_0145" FT /product="CheA signal transduction histidine kinase" FT /note="PFAM: CheW domain protein; ATP-binding region FT ATPase domain protein; Signal transducing histidine kinase FT homodimeric; Hpt domain protein" FT /note="SPTR: Chemotaxis protein cheA - Bradyrhizobium sp. FT (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_6737 chemotaxis protein CheA " FT /note="COGs: COG0643 Chemotaxis protein histidine kinase FT and related kinase category=N" FT /note="InterPro FT IPR002545:IPR003594:IPR004105:IPR004358:IPR005467:IPR008207:IPR008208" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTTIDPAAVFRQEAAELFEVLEAALLDLGQNPDDRELVDSAFRALHTIKGSGAMFGFDKVATFTHEFETAFERVRKGEIK FT PTQDLVSVALAAKDFIRALIETPDEADAIIGEAILADLSRFVSPTEAVEAPVSLPAQEPAPAPASERRQVGWHLRFEFDS FT QILRNGSNPLDLLDDLSKLGSCFAMPLTDGIPFLDELVPEDCYLKWDVSLHSDCDKAAIDDVFMFVQDEMQLSLEPLFEG FT ETPQPVPVLELPDVSILPPEPPQAAEETKPAPQAATAAPAAPTVERRSGEPRRADDRGIATVRVQAERLDELMDRVGELV FT IAQARLTQLAASGNDISIKLIAEEIERLASSLRDTTMGARMVPIGSLFGRFRRLVHDLSRDLGKPVEFITSGEDTELDKT FT MIECLADPLVHLIRNAIDHGIEAPAARVAAGKPEQGRIELAAVHAGAQVLVTVKDNGGGLNTARIRAKAEEQGLIAPGAT FT ASDQEIHQFLFHPGFSTAQTVSALSGRGVGMDVVKRTIENMRGSIDLSTVPGDGTTVTLRLPLTLAIIEGLLIRVGSGRY FT IIPLSAVEECVELTAEDERSRSRNFLNVRGNLVPFLRLRQIFDADGEPDQHQKTIIISTGETRVGLVADQIIGNHQTVIK FT SLSKLHSDVTMFSGATILGDGTAALILDVVQLVGLAQAQSEKQMSEAA* " FT gene complement(161272..163338) FT /locus_tag="Rpal_0145" FT /colour=9 FT CDS complement(163335..163700) FT /locus_tag="Rpal_0146" FT /product="response regulator receiver protein" FT /note="PFAM: response regulator receiver" FT /note="SPTR: Chemotaxis two-component response regulator - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:blr2342 chemotaxis two-component response FT regulator " FT /note="COGs: COG2204 Response regulator containing FT CheY-like receiver AAA-type ATPase and DNA-binding domains FT category=T" FT /note="InterPro IPR001789" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MATILTVDDSPSIRQMIKVTLEPAGHSVVEAGDGAQGLSKAQATKVDLVITDLNMPVMNGLELIKALRKQPNLVGLPIVF FT LTTESNDAVKQEAKSCGATGWITKPFKPEQLLSVVSKLVRS* " FT gene complement(163335..163700) FT /locus_tag="Rpal_0146" FT /colour=15 FT CDS complement(163700..164023) FT /locus_tag="Rpal_0147" FT /product="anti-sigma-factor antagonist" FT /note="PFAM: Sulfate transporter/antisigma-factor FT antagonist STAS" FT /note="SPTR: Blr2341 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr2341 hypothetical protein " FT /note="InterPro IPR002645" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTFDPTEAGAALRLPSDCSISSIRSIHETIQEALGRQGPLEIDCSKVNRADLTSIQLLLSTAKTGEAQGRPVVLTELSEV FT LLNTIQRAGFTGDEIIDKHFPQKKGGS* " FT gene complement(163700..164023) FT /locus_tag="Rpal_0147" FT /colour=13 FT CDS 164312..165469 FT /locus_tag="Rpal_0148" FT /product="response regulator receiver modulated metal FT dependent phosphohydrolase" FT /note="PFAM: response regulator receiver; metal-dependent FT phosphohydrolase HD sub domain" FT /note="SMART: metal-dependent phosphohydrolase HD region" FT /note="SPTR: Two-component response regulator - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:bll2340 two-component response regulator FT " FT /note="COGs: COG3437 Response regulator containing a FT CheY-like receiver domain and an HD-GYP domain category=K" FT /note="InterPro IPR001789:IPR003607:IPR006674" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MLIQALVVDDSRSALDYLKRTIEFDGQVQVIGFTDPVLALASARNLDIDIVFADYEMPNMDGISLIRRLRSLPKFSDIPI FT VMITSIESDEVRLQALDAGATDFLPKRPKSLETQVRLRNMIRLGSAVRKLNDRAALLASEVARATHALQEREEEIILRLA FT LSVEYRDNDTGDHTLRVAKYSRMIAEGLGLPERLCRDIYLAAPLHDVGKVATPDHILLKPGKLTPDEIAVMQTHTTIGAS FT ILAGSRCELIQLAADIAIGHHERWDGKGYPNKLKGAEIPIAARIVAVADVFDALATARPYKVAMPLPVARQHLENGRGQH FT FDPTCVDVFLARWDDVVAIATERLKLQQTHDAPLQPSLPADAQEPTITLPASNRKAGQTGLVPSE* FT " FT gene 164312..165469 FT /locus_tag="Rpal_0148" FT /colour=6 FT CDS complement(165638..165820) FT /locus_tag="Rpal_0149" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MNQFKLGDEVCKDNGRRGVVRAIFVNREAARMCAVEINGALDFIEESRLSPQQQRADLAA*" FT gene complement(165638..165820) FT /locus_tag="Rpal_0149" FT /colour=13 FT tRNA complement(166045..166134) FT /locus_tag="Rpal_R0003" FT /gene="tRNA-Ser5" FT /note="anticodon CGA, Cove Score=78.76" FT /product="tRNA_Ser" FT /colour=8 FT CDS complement(166287..167450) FT /locus_tag="Rpal_0150" FT /product="conserved hypothetical protein; putative FT glucokinase" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0437 conserved hypothetical protein; FT putative glucokinase " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAEDSLTTTNAGIAAHGATRLPSVEIDSYNIEIKDEDGFLGDRASKGAFQRLLDDWRKALRETGDDPFGRRDTKNIAKSA FT LDEVLTSDDVAAAAVVHSAIEDFAQELAYVTKRFLRTKAWAETECIVVGGGFRQSRVGELAIARTDILLKADGHAVDLVP FT IRFHPDEAGLIGCLHLAPSWIFEAHDSILAVDIGGSNIRCGVVETAWKKAPDLSKASVWKSDLWRHADDEPTREGAVKRL FT TRMLKDLISEAEDEGFKLAPFIGISCPGVINADGSIEKGAQNLPGNWESSKFHLPRSLLEGIPTIGSHDTAILMHNDGVA FT QGLSEVPFMQEFERWGVLTIGTGLGNARFTNRRDKDKAKKEREKDKEKDKEKDKEKGKKDKDSKEKA* FT " FT gene complement(166287..167450) FT /locus_tag="Rpal_0150" FT /colour=13 FT CDS 167773..168153 FT /locus_tag="Rpal_0151" FT /product="ribosomal protein L21" FT /note="PFAM: ribosomal protein L21" FT /note="SPTR: Q3SVI5 50S ribosomal protein L21. Nitrobacter FT winogradskyi (strain Nb-255 / ATCC 25391)." FT /note="KEGG: nwi:Nwi_0439 50S ribosomal protein L21 " FT /note="COGs: COG0261 Ribosomal protein L21 category=J" FT /note="InterPro IPR001787" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MFAVIKTGGRQYRVVPEDVLEVGKIDGDVGSIIQLGEVLVLGGDTPVLGAPTVAGATVAAEVLDHKRGPKVIAFKKRRRK FT HSKRKRGYRDEITVLRITEILADGKKPSVGPRAKRTKAAPAAEAAE* " FT gene 167773..168153 FT /locus_tag="Rpal_0151" FT /colour=7 FT CDS 168243..168515 FT /locus_tag="Rpal_0152" FT /product="ribosomal protein L27" FT /note="PFAM: ribosomal protein L27" FT /note="SPTR: Q1QQU2 50S ribosomal protein L27. Nitrobacter FT hamburgensis (strain X14 / DSM 10229)." FT /note="KEGG: nha:Nham_0515 50S ribosomal protein L27 " FT /note="COGs: COG0211 Ribosomal protein L27 category=J" FT /note="InterPro IPR001684" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MAHKKAGGSSRNGRDSAGKRLGVKAFGGEHVIPGNIIARQRGTQWHPGLNVGMGTDHTLFAKVEGRVEFRAKANGRTYVSVLPIAMQAAE*" FT gene 168243..168515 FT /locus_tag="Rpal_0152" FT /colour=7 FT CDS 168650..169249 FT /locus_tag="Rpal_0153" FT /product="GCN5-related N-acetyltransferase" FT /note="PFAM: GCN5-related N-acetyltransferase" FT /note="SPTR: GCN5-related N-acetyltransferase - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0516 GCN5-related FT N-acetyltransferase " FT /note="COGs: COG1670 Acetyltransferase including FT N-acetylase of ribosomal protein category=J" FT /note="InterPro IPR000182" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MLQEIPTTTPSLREARPCVLETERLTLRKPVLADVQAIASLANDRRVVEMTRRMPFPYTRDDAARFVTALPKSSDSVFLI FT EAEDLEPIGLVGVDWSDRDAPELGYWLGVQHWGNGYATEAARAVIDFTFEVHGAKQMISGARVINPASRNVLEKCGFQWT FT GVELHRFESIGSSTPVDCFRLTRGVWSSLKKWGTTKRRC* " FT gene 168650..169249 FT /locus_tag="Rpal_0153" FT /colour=7 FT CDS 169461..169652 FT /locus_tag="Rpal_0154" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSAHRYIQAVLARDLAEEIKPLAPATIAQVELTAERAAEAEQHRERTEQLSFRFVDLDRRFGI*" FT gene 169461..169652 FT /locus_tag="Rpal_0154" FT /colour=13 FT CDS 169782..169955 FT /locus_tag="Rpal_0155" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSDSPDQAVAVRDVRDEFRADLDAFEATERKLLIEERRERARVLSERFSGLALRVGE*" FT gene 169782..169955 FT /locus_tag="Rpal_0155" FT /colour=13 FT CDS complement(169956..170861) FT /locus_tag="Rpal_0156" FT /product="protein of unknown function DUF6 transmembrane" FT /note="PFAM: protein of unknown function DUF6 FT transmembrane" FT /note="SPTR: Bll0423 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0423 hypothetical protein " FT /note="InterPro IPR000276:IPR000620:IPR001865" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MGLFAKITTASDPRTARIAGILLMLLAMLAFSFADAAGKTVVAIYSVGQLLVLRALAGLLVLSPLIWRQRKAFLQLERPG FT LQLARTLIAACEVAVFYLATAYLPLADVITFYLASSLFVSVGAALFLGETIDRPRGIAIVVGFVGVLIALQPSTQTMSWP FT ALIAILASVLFAGLLLLTRFLRQTPDMVLASQQFAGTLLLGLVLAPSGWITPSATDLVWFAISGAVSAVGLLCVNRSLRL FT APASVVVPYQYTMIIFAAAFGWLLFGDVPSRATVAGVAIIIAAGLYLGWRERSTSRPPVGG* FT " FT gene complement(169956..170861) FT /locus_tag="Rpal_0156" FT /colour=13 FT misc_feature complement(order(169995..170045,170076..170141,170163..170219,170232..170297,170319..170384,170400..170456,170478..170534,170547..170612,170673..170738,170751..170801)) FT /colour=11 FT /locus_tag="Rpal_0156" FT /note="10 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(170751..170861) FT /colour=11 FT /locus_tag="Rpal_0156" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.829 at FT residue 37" FT CDS 171013..172074 FT /locus_tag="Rpal_0157" FT /product="GTP-binding protein Obg/CgtA" FT /note="TIGRFAM: small GTP-binding protein; GTP-binding FT protein Obg/CgtA" FT /note="PFAM: GTP-binding protein HSR1-related; GTP1/OBG FT sub domain protein" FT /note="SPTR: GTP-binding protein with nucleoside triP FT hydrolase domain; DNA-binding GTPase involved in cell FT partioning; multicopy suppresssor of ftsJ(RrmJ) - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0432 GTPase ObgE " FT /note="COGs: COG0536 GTPase category=R" FT /note="InterPro FT IPR002917:IPR005225:IPR006073:IPR006074:IPR006169:IPR014100" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MKFLDEAKVYIRSGDGGNGCVAFRREKFIEFGGPNGGNGGRGGDIIVEAADGLNTLIDYRYQQHFKAQKGGNGMGSDRHG FT AGGKDIVMKVPVGTQIFDEDKETLIHDFTKVGERFVLAKGGNGGFGNAHFKSSTNRAPRHANPGLPGEERWIWLRLKLIA FT DAGLVGLPNAGKSTFLSKVSAAKPKIADYPFTTLHPQLGVVNSDGREFVLADIPGLIEGAHEGAGLGDRFLGHIERCRVL FT LHLIDATCEHAGKAYKTVRGELEAYAETLVDKIEIVALNKIDAVEPDELKKQKDRLKRAAKKTPLLLSGVTGQGVPEVLR FT ALVAVIGEAPVSDKAIGTADNPAEAKPWAPQDA* " FT gene 171013..172074 FT /locus_tag="Rpal_0157" FT /colour=11 FT CDS 172213..173343 FT /locus_tag="Rpal_0158" FT /product="glutamate 5-kinase" FT /EC_number="2.7.2.11" FT /note="TIGRFAM: glutamate 5-kinase" FT /note="PRIAM: Glutamate 5-kinase" FT /note="PFAM: aspartate/glutamate/uridylate kinase; PUA FT domain containing protein" FT /note="SPTR: Glutamate 5-kinase - Bradyrhizobium sp. FT (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0422 gamma-glutamyl kinase " FT /note="COGs: COG0263 Glutamate 5-kinase category=E" FT /note="InterPro IPR001048:IPR001057:IPR002478:IPR005715" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MASPKLHDFRHIVVKVGSSLLIDSAAGEVRAGWLAALAADIAELHRGGRDVMVVSSGSIALGRSRLKLPRGPLKLEESQA FT AAAVGQIELARTWSEVLGAHGIGAGQILVTFQDTEERRRYLNARSTIAKLLEWRAVPVINENDTVATTEIRYGDNDRLAA FT RVATMASADLLILLSDIDGLYTAPPGNDPDATLIPVVEAITAEIEGMAGAAGSELSRGGMRTKIEAAKIATSAGTHMLIA FT SGKIDHPLRAIAEGGKCTWFLTPANPVTARKRWIAGTLEPKGTLTIDAGAVSALRAGKSLLPAGVIRVDGQFSRGDAVIV FT RGPDTHEIGRGLVAYDAEDAEKIKGHSSPDVMMILGITGRAEMIHRDDLVVGTAPT* FT " FT gene 172213..173343 FT /locus_tag="Rpal_0158" FT /colour=10 FT CDS 173547..174839 FT /locus_tag="Rpal_0159" FT /product="gamma-glutamyl phosphate reductase" FT /EC_number="1.2.1.41" FT /note="TIGRFAM: gamma-glutamyl phosphate reductase" FT /note="PRIAM: Glutamate-5-semialdehyde dehydrogenase" FT /note="SPTR: Q89X85 Gamma-glutamyl phosphate reductase (EC FT 1.2.1.41) (GPR) (Glutamate-5- semialdehyde dehydrogenase) FT (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA FT dehydrogenase). Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0429 gamma-glutamyl phosphate FT reductase " FT /note="COGs: COG0014 Gamma-glutamyl phosphate reductase FT category=E" FT /note="InterPro IPR000965" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MTASLKAIDGSAELTTLMTDLGRQARAAARILALAPPEQKNRALEAMERAIRAGADKILAANAEDVDDAKAAGTTSAFLD FT RLTLTPARVEAMAEGIAVVRGIADPVGTVTESWQRPNGMTIERVRVPLGVVAVIFESRPNVAADAGVLCLKSGNAVILRG FT GSESFRSCRAIHDCLVQGLREAGLPDAAITLVPTRDRAAVGLLLAGLDGSVDVIVPRGGKSLVARVESEARVPVFAHLEG FT VNHVYVDRSADLEMAKSIVLNAKMRRTGVCGAAETLLIDRAAATTHLAPLVTMLIDSGCEVRGDQTVQKVDPRVKPASDE FT DWDTEYLDAVIAAKLVDGVDGAIAHIHNHGSHHTDAIVAEDVQAAAKFLGEVDSAIVLHNASTQFADGGEFGFGAEIGIA FT TGKFHARGPVGAEQLTTFKYRIHGSGQTRP* " FT gene 173547..174839 FT /locus_tag="Rpal_0159" FT /colour=10 FT CDS 174864..175493 FT /locus_tag="Rpal_0160" FT /product="nicotinate (nicotinamide) nucleotide FT adenylyltransferase" FT /note="TIGRFAM: nicotinate (nicotinamide) nucleotide FT adenylyltransferase" FT /note="PFAM: cytidylyltransferase" FT /note="SPTR: Nicotinate-nucleotide adenylyltransferase FT family protein - Nitrobacter hamburgensis (strain X14 / FT DSM 10229)" FT /note="KEGG: bja:blr0430 nicotinic acid mononucleotide FT adenyltransferase " FT /note="COGs: COG1057 Nicotinic acid mononucleotide FT adenylyltransferase category=H" FT /note="InterPro IPR004820:IPR005248" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="VTTDLAAARRAIPPFAPGMRIGLLGGSFNPPHLAHRAISQFAIKRLKLDRVWWLVSPGNPLKDISSLREIDARVAAAQAI FT ADDPRIQVSRLEAVIGTRYTADTLRYLRRHCPGARFVWIMGADNLAQFHRWQQWQQIAAEVPIAVIDRPPTSFRALAAPA FT AQRLMRMRIPNSKAATLADREPPAWVYLTGLKSPVSSTALRNPDGSWKT* " FT gene 174864..175493 FT /locus_tag="Rpal_0160" FT /colour=12 FT CDS 175708..176160 FT /locus_tag="Rpal_0161" FT /product="iojap-like protein" FT /note="TIGRFAM: iojap-like protein" FT /note="PFAM: Iojap-related protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0417 hypothetical protein " FT /note="COGs: COG0799 Iojap protein category=S" FT /note="InterPro IPR004394" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="LPKSVAAKASRSASTRTAPVPTPEAIAPDTSQFKAAPDAEATLKLILSRLDDMKAEETVTIDLRGKSAMFDYVVVTTGRA FT NRHVGAIAENVVKALKQAGIAAPHVEGLPNCDWVLIDSGDVVLHVFRPEVREFYNLERLWTQGPSPAKTL* FT " FT gene 175708..176160 FT /locus_tag="Rpal_0161" FT /colour=13 FT CDS 176250..176732 FT /locus_tag="Rpal_0162" FT /product="protein of unknown function DUF163" FT /note="PFAM: protein of unknown function DUF163" FT /note="SPTR: Q1QQT4 UPF0247 protein Nham_0523. Nitrobacter FT hamburgensis (strain X14 / DSM 10229)." FT /note="KEGG: nha:Nham_0523 protein of unknown function FT DUF163 " FT /note="COGs: COG1576 conserved hypothetical protein FT category=S" FT /note="InterPro IPR003742" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRLLILAVGKLKQGPERELAERYRARFDDLGRKLGFRGLDVHEIAESRAREAPARMAEEAAAIIAQVQDGAVLVTLDERG FT QSLGSTAFAAQLGRWRDEQVPGTIFVIGGADGLLPELRRKAKLSMSFGGATWPHQMVRVMLLEQIYRAATILAGHPYHRA FT * " FT gene 176250..176732 FT /locus_tag="Rpal_0162" FT /colour=13 FT CDS 176752..178143 FT /locus_tag="Rpal_0163" FT /product="Peptidase M23" FT /note="PFAM: Peptidase M23" FT /note="SPTR: Peptidase M23B precursor - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0524 peptidase M23B " FT /note="COGs: COG4942 Membrane-bound metallopeptidase FT category=D" FT /note="InterPro IPR016047" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MHAPRNTAARHHVAAGSWRPAVLLSAGLAAGLWANDVARPNGVLISSAKAQTAPAATTTAPSMADLIKQHEQELEAARAQ FT QKSAAEQQDKLKADLAAIGADRTKLNQELIDVAAKVRAVETRISDAEARLRPLDAREAEIRTSLDARRGEIGEVLAALQR FT AGRRAPPALLVRPEDALESLRTAILLGAVVPELRTRAERLATDLGELIAVRQRIAAERDQLAADRSHLTTDQTRLAALVE FT ERQRQQSAVEKDIEAERGRALTLSRQVDSLQGLIAKMEQDLKSAAKAAAAADQKGAPAAGKANLAALKDPGRLSPAIAFA FT SAKGMLPLPVNGTKIREFGRPDGVGGVERGISLSTRAGAQITTPCDGWVVYAGPFRSYGQLLILNAGGGYHVLIAGMERI FT SVNIGQFVLTGEPVATMGSTSRVASILAANASQPVLYVEFRKDGTPIDPGPWWAANEGEKVRG* FT " FT sig_peptide 176752..176856 FT /colour=11 FT /locus_tag="Rpal_0163" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.701) with cleavage site probability 0.670 at FT residue 35" FT gene 176752..178143 FT /locus_tag="Rpal_0163" FT /colour=9 FT CDS 178140..179516 FT /locus_tag="Rpal_0164" FT /product="carboxyl-terminal protease" FT /EC_number="3.4.21.102" FT /note="TIGRFAM: carboxyl-terminal protease" FT /note="PRIAM: C-terminal processing peptidase" FT /note="PFAM: PDZ/DHR/GLGF domain protein; peptidase S41" FT /note="SPTR: Carboxy-terminal protease - Bradyrhizobium FT japonicum" FT /note="KEGG: bja:blr0434 carboxy-terminal protease " FT /note="COGs: COG0793 Periplasmic protease category=M" FT /note="InterPro IPR001478:IPR004447:IPR005151" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MMRKTSVILLSAVTGAALTLFVTQPRTMLMGATARAATSDTYRQLNLFGDVFERVRSDYVEKPDDSKLVESAISGMLAGL FT DPHSSYMDAKSFRDMQVQTRGEFGGLGIEVTMEDGLIKVVSPIDDTPASKAGILANDIITNLDDEAVQGLTLNQAVEKMR FT GPVNTKIRLKIVRKGQDNPIEVTLVRDNIRVRSVRARVEDSDIGYIRITTFNEQTTEGLKKEIANLTNQIGADKLKGFIL FT DLRNNPGGLLEEAVTVSDAFLDRGEIVSTRGRNAEETQRRSAHAGDLTKGKPVIVLINGGSASASEIVAGALQDHKRATV FT VGTRSFGKGSVQTIIPLGSGNGALRLTTARYYTPSGKSIQAKGITPDIEVMQDVPADLKARTDTKGEASLRGHLKGADGD FT EKTGSQSYVPPEAKDDKALKAAADLLHGIKVNASAPADKQTTGDKAAIDKPAGNKAAN* FT " FT sig_peptide 178140..178250 FT /colour=11 FT /locus_tag="Rpal_0164" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.997) with cleavage site probability 0.779 at FT residue 37" FT gene 178140..179516 FT /locus_tag="Rpal_0164" FT /colour=9 FT misc_feature 178158..178211 FT /colour=11 FT /locus_tag="Rpal_0164" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 179667..180905 FT /locus_tag="Rpal_0165" FT /product="protein of unknown function DUF610 YibQ" FT /note="PFAM: protein of unknown function DUF610 YibQ" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0526 protein of unknown function FT DUF610, YibQ " FT /note="COGs: COG2861 conserved hypothetical protein FT category=S" FT /note="InterPro IPR006837" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VAADELSTPLGQKRNRWQRLRHYRLPFNATQGIAALLGLFVLTFLGFALFGNDPFGGEPVVRVEIKASPDEAKQAAAEAG FT KDQGGKPENAAAAGAEKKDAEPKEAAAGQKTITIIDGSKGTRQDVVVGTDSPDKAEPPAGPTTSDGINPKLLEQSRYGMI FT PVMAGGLKPFSAYAMTTDADRAKAERMPTVTIVVGGLGIGAARTNDAVMKLPAAVALAFTPYGSDPGKLATEARAKRHEV FT ILQIPMEPFDYPDNDPGPQTLLTSSAPEQNLDRLNWHLSRIQGYVGLSNFMGARFVATEPAMQAIIRDAAKRGLGYLDDG FT TAPRSVAGTLAKSLAIPFARADLTIDQVPAGADIDKSLARLESIAKERGSAVGMASALPVTIERIVNWSKSLESRGILLA FT PLTTAMLKSKSS* " FT gene 179667..180905 FT /locus_tag="Rpal_0165" FT /colour=13 FT misc_feature 179739..179807 FT /colour=11 FT /locus_tag="Rpal_0165" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 180944..181450 FT /locus_tag="Rpal_0166" FT /product="NUDIX hydrolase" FT /note="PFAM: NUDIX hydrolase" FT /note="SPTR: Q89X78 RNA pyrophosphohydrolase (EC 3.6.1.-) FT ((Di)nucleoside polyphosphate hydrolase). Bradyrhizobium FT japonicum." FT /note="KEGG: bja:blr0436 dinucleoside polyphosphate FT hydrolase " FT /note="InterPro IPR000086" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MARYEDLPYRTCVGVMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETSVNSVEKLAEVPD FT WLIYDIPRTVAGRAWKGRYRGQRQKWFAARFTGADSEINVVHPGGGHKAEFTSWRWEPMHNLPELIVPFKRPVYERVVKE FT FSQLAAAV* " FT gene 180944..181450 FT /locus_tag="Rpal_0166" FT /colour=11 FT CDS complement(181632..182702) FT /locus_tag="Rpal_0167" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Methylobacterium extorquens PA1" FT /note="KEGG: mex:Mext_4348 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTTPVDTSKLRILEIGGGYFKLQYPERTTCLWTWTKLTDDFGKLDGFSTPDRVLRELRAAGRGEYDVVVVNSLRYSPWHP FT RYWARGIFYTPTNPWAALTRQFGPSVFRWVKSPVPVVAVEMDDHFAISKSSVFLLDKAEAYFKRELPCDKWQALAGTVHP FT HLPTLRYRRSEKWQRRIDKLQPISLPQFRFDARWRDAPFPEKTHDIFFIGSVNGNSTVRRDGLPELERLRAAGVRIDQPT FT ERLPYDAFMERMSHSWLAWSPEGMGWDCYRHYEAPIVQSVPLMNNPTILRYAPLLSGQHGVYYDVEPGGLERAVTSALAD FT KDNLRRMALAARDHVFAHHTVKAHCDHILQAAMAAR* " FT gene complement(181632..182702) FT /locus_tag="Rpal_0167" FT /colour=13 FT CDS 182970..183917 FT /locus_tag="Rpal_0168" FT /product="NAD-dependent epimerase/dehydratase" FT /note="PFAM: NAD-dependent epimerase/dehydratase; 3-beta FT hydroxysteroid dehydrogenase/isomerase; Male sterility FT domain" FT /note="SPTR: Putative sugar nucleotide dehydratase - FT Rhodobacterales bacterium HTCC2654" FT /note="KEGG: mca:MCA1165 NAD-dependent FT epimerase/dehydratase family protein " FT /note="COGs: COG0451 Nucleoside-diphosphate-sugar FT epimerase category=M" FT /note="InterPro IPR001509:IPR002225:IPR013120" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRLSRRILVSGGAGFIGSHLCDKLLAEGHEILCVDNYFTGWRRNIEHLVGTPRFEVMRHDVTFPLYVEVDDIYNLACPAS FT PVHYQHDPVQTLKTSVHGAINMLGLAKRTRAKIFQASTSEVYGDPNVHPQPESYWGHVNPLGIRACYDEGKRAAETLFFD FT YHRQHKVKIKVGRIFNTYGPRMHPNDGRVVSNFIVQALSGNDITIYGDGSQTRSFCYVTDLLDGFARLMATGDEFIGPVN FT LGNPVEFTIRQLAEMVIEMTDSRSKLVMMPLPSDDPRQRQPDISLARRELGWEPKVPLADGLKETIGYFRTLMAS* FT " FT gene 182970..183917 FT /locus_tag="Rpal_0168" FT /colour=9 FT CDS 183914..184435 FT /locus_tag="Rpal_0169" FT /product="NUDIX hydrolase" FT /note="PFAM: NUDIX hydrolase" FT /note="SPTR: Invasion protein A - Bradyrhizobium FT japonicum" FT /note="KEGG: bja:blr0437 dinucleoside polyphosphate FT hydrolase " FT /note="InterPro IPR000086" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VTSRPPIESLPYRRNVGIALFGADGRVLIGRRFRDDGPEIILPGLEWQMPQGGIDEGEEPRIAVMRELWEETGVTNAEIL FT GETDWASYDFPPYDGPPHRLAVFRGQRQKWFALRFTGSETEIDPLAVRNDMPPEFDAWRWEQLDRVADLVVPFRREVYRE FT VARSFARFTAAQA* " FT gene 183914..184435 FT /locus_tag="Rpal_0169" FT /colour=11 FT CDS complement(184618..185025) FT /locus_tag="Rpal_0170" FT /product="ATP synthase F1, epsilon subunit" FT /note="TIGRFAM: ATP synthase F1, epsilon subunit" FT /note="PFAM: H+transporting two-sector ATPase FT delta/epsilon subunit" FT /note="SPTR: Q3SVJ0 ATP synthase epsilon chain (EC FT 3.6.3.14) (ATP synthase F1 sector epsilon subunit). FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)." FT /note="KEGG: nwi:Nwi_0434 H+-transporting two-sector FT ATPase, delta/epsilon subunit " FT /note="COGs: COG0355 F0F1-type ATP synthase epsilon FT subunit (mitochondrial delta subunit) category=C" FT /note="InterPro IPR001469" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MSTFHFDLVSPEMVAFSGDVDQVDIPGAEGDFGVLAGHAPVVAVIRPGILTVTAGANKQKIVVLGGIAEVSDKGLTVLAD FT VATPAPDVDLQDFAATIQTMEQQIPGKVGDELDRAIERLDHFKSIQHELNTTAMH* " FT gene complement(184618..185025) FT /locus_tag="Rpal_0170" FT /colour=3 FT CDS complement(185139..186569) FT /locus_tag="Rpal_0171" FT /product="ATP synthase F1, beta subunit" FT /note="TIGRFAM: ATP synthase F1, beta subunit" FT /note="PFAM: H+transporting two-sector ATPase alpha/beta FT subunit central region; H+transporting two-sector ATPase FT alpha/beta subunit domain protein" FT /note="SMART: AAA ATPase" FT /note="SPTR: Q1QQS8 ATP synthase subunit beta (EC FT 3.6.3.14) (ATPase subunit beta) (ATP synthase F1 sector FT subunit beta). Nitrobacter hamburgensis (strain X14 / DSM FT 10229)." FT /note="KEGG: nha:Nham_0529 F0F1 ATP synthase subunit beta FT " FT /note="COGs: COG0055 F0F1-type ATP synthase beta subunit FT category=C" FT /note="InterPro FT IPR000194:IPR000793:IPR003593:IPR004100:IPR005722" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MATPANQTGRITQVIGAVVDVQFEGHLPAILNAIETKNGDNRLVLEVAQHLGESTVRTIAMDTTEGLVRGQEVTDTGAPI FT SVPVGAGTLGRIMNVIGEPVDEQGPIKSEGLRAIHQEAPAYTDQSTEAEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGK FT TVLIQELINNVARAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKCALVYGQMNEPPGARARVGLTGLTVAE FT HFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPAP FT ATSFAHLDATTVLNRAISEKGIYPAVDPLDSTSRMLSASIVGEEHYNTARMVQQILQKYKSLQDIIAILGMDELSEEDKL FT TVARARKIERFLSQPFFVAEVFTGSPGKFVDLADTIKGFRAICEGKYDHLPEAAFYMVGTIEEAVEKGKKLAAEAA* FT " FT gene complement(185139..186569) FT /locus_tag="Rpal_0171" FT /colour=3 FT CDS complement(186641..187516) FT /locus_tag="Rpal_0172" FT /product="ATP synthase F1, gamma subunit" FT /EC_number="3.6.3.14" FT /note="TIGRFAM: ATP synthase F1, gamma subunit" FT /note="PRIAM: H(+)-transporting two-sector ATPase" FT /note="PFAM: H+transporting two-sector ATPase gamma FT subunit" FT /note="SPTR: Q1QQS6 ATP synthase gamma chain (EC 3.6.3.14) FT (ATP synthase F1 sector gamma subunit). Nitrobacter FT hamburgensis (strain X14 / DSM 10229)." FT /note="KEGG: nha:Nham_0531 F0F1 ATP synthase subunit gamma FT " FT /note="COGs: COG0224 F0F1-type ATP synthase gamma subunit FT category=C" FT /note="InterPro IPR000131" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MASLKDMRVRIASTKATQKITKAMQMVAASKLRRAQMAAEAARPYAEKMEAVISNIAGAAAGSPGAPVLLAGNGKDQVHL FT LLVCTGERGLSGAFNSSIVRLARERAYELMSQGKTVKFFCVGRKGYEQLRRNFEKQIIDNVELRSVRQIGFVNAEDIAKK FT VIARFNAGEFDVCTLFYSRFKSVISQIPTAQQLIPLEVTAPAAGTVATSYEYEPEEDEILSGLLPRNLAVQIFRALLENN FT ASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAMITKELIEIISGAEAI* " FT gene complement(186641..187516) FT /locus_tag="Rpal_0172" FT /colour=3 FT CDS complement(187660..189192) FT /locus_tag="Rpal_0173" FT /product="ATP synthase F1, alpha subunit" FT /EC_number="3.4.21.68" FT /note="TIGRFAM: ATP synthase F1, alpha subunit" FT /note="PRIAM: T-plasminogen activator" FT /note="PFAM: H+transporting two-sector ATPase alpha/beta FT subunit central region; H+transporting two-sector ATPase FT alpha/beta subunit domain protein; ATP synthase F1 alpha FT subunit" FT /note="SPTR: Q1QQS5 ATP synthase subunit alpha (EC FT 3.6.3.14) (ATPase subunit alpha) (ATP synthase F1 sector FT subunit alpha). Nitrobacter hamburgensis (strain X14 / DSM FT 10229)." FT /note="KEGG: nha:Nham_0532 F0F1 ATP synthase subunit alpha FT " FT /note="COGs: COG0056 F0F1-type ATP synthase alpha subunit FT category=C" FT /note="InterPro IPR000194:IPR000793:IPR004100:IPR005294" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MDIRAAEISAILKDQIKNFGQEAEVSEVGQVLSVGDGIARVYGLDNVLAGEMVEFENGTRGMALNLETDNVGVVIFGADR FT EIKEGQTVKRTRSIVDAPVGKGLLGRVVDALGNPIDGKGPIQAVERKRVDVKAPGIIPRKSVHEPMATGLKSIDALIPIG FT RGQRELIIGDRQTGKTAIALDTILNQKPLNVEGAPESQKLYCVYVAVGQKRSTVAQFVKVLEEQGALEYSVVVAATASDP FT APMQYIAPFTGCTIGEYFRDNGMHAVIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEQGNG FT SLTALPVIETQANDVSAYIPTNVISITDGQIFLETDLFFQGIRPAVNVGLSVSRVGSSAQTKAMKKVAGKIKGELAQYRE FT MAAFAQFGSDLDAATQRLLNRGSRLTELLKQPQFSPLKMEEQVCVIWAGTNGYLDALPLNKVRAFEDGLLALLRGKESGI FT LEAIRTSRDLSDDTAAKLKAVVESYAKTFA* " FT gene complement(187660..189192) FT /locus_tag="Rpal_0173" FT /colour=3 FT CDS complement(189192..189752) FT /locus_tag="Rpal_0174" FT /product="ATP synthase F1, delta subunit" FT /EC_number="3.6.3.14" FT /note="TIGRFAM: ATP synthase F1, delta subunit" FT /note="PRIAM: H(+)-transporting two-sector ATPase" FT /note="PFAM: H+transporting two-sector ATPase delta (OSCP) FT subunit" FT /note="SPTR: H+-transporting two-sector ATPase, delta - FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_0429 F0F1 ATP synthase subunit delta FT " FT /note="COGs: COG0712 F0F1-type ATP synthase delta subunit FT (mitochondrial oligomycin sensitivity protein) category=C" FT /note="InterPro IPR000711" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="VASEDPSVSGVSGRYATALFELARDEKSIDAVTADLDKFSAMLAGSPDLVRLVRSPVFASEVQGKALAAVLDKAGITGIS FT ANFLKVLAANRRLFVVADVIRAYRALVAKFKGEATADVTVAEKLSDKNLEALKAALKSVTGKDVALNINVDPAIIGGLVV FT KLGSRMVDSSLRTKLNSIKHAMKEAG* " FT gene complement(189192..189752) FT /locus_tag="Rpal_0174" FT /colour=3 FT CDS 190456..190926 FT /locus_tag="Rpal_0175" FT /product="rare lipoprotein A" FT /note="TIGRFAM: rare lipoprotein A" FT /note="PFAM: Rare lipoprotein A" FT /note="SPTR: Blr0444 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr044 hypothetical protein " FT /note="COGs: COG0797 Lipoprotein category=M" FT /note="InterPro IPR005132:IPR012997" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MVRKKTPALLTTGPAAAAAMIVASVFLGGSVGEASAKSRHHRHHHHSHHSDWRSANASVESSGGRSFSGMASYYGNESGS FT RTASGQRMNANAMTAAHRTLPFGTKLRVTHGGRSVVVTINDRGPFIRGRVLDLSTGAARAIGLTSRGVGRVVAEVM* FT " FT sig_peptide 190456..190566 FT /colour=11 FT /locus_tag="Rpal_0175" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.215 at FT residue 37" FT gene 190456..190926 FT /locus_tag="Rpal_0175" FT /colour=9 FT misc_feature 190483..190551 FT /colour=11 FT /locus_tag="Rpal_0175" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(191082..193292) FT /locus_tag="Rpal_0176" FT /product="primosomal protein N'" FT /note="TIGRFAM: primosomal protein N'" FT /note="PFAM: helicase domain protein; type III restriction FT protein res subunit; DEAD/DEAH box helicase domain FT protein" FT /note="SMART: DEAD-like helicases " FT /note="SPTR: Primosomal protein N' - Bradyrhizobium FT japonicum" FT /note="KEGG: bja:bll0445 primosome assembly protein PriA " FT /note="COGs: COG1198 Primosomal protein N' (replication FT factor Y) - superfamily II helicase category=L" FT /note="InterPro FT IPR001650:IPR005259:IPR006935:IPR011545:IPR014001:IPR014021" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MDDLPTSSPASHAPASVVDVLVPVAIDQAYSYRVPRGLSLKPGDVVAVPLGAREVLGVVWAENPNPDPRLHNRLKDVAEK FT LDVPPLRDELRRMVDWVSTYTLSARGMVLRMCLRMGEHLGPERQRMGVRLVGSPPQRMTPARRRLLQILSDGLLHGKSDV FT AKEAGVSPGVIDGLVDEGTLQVEQMPRENPAPEPDPDFAPADFSPEQARAAETMRGLVTAGGFQAALIDGVTGSGKTEVY FT FEAVAEVIRQGRQSLILMPEIALTGQFLDRFAQRFGVRPLEWHSELTPRTRARNWASIAAGEARVVVGARSALFLPYADL FT GLIIVDEEHDQAYKQEDGAHYHARDMAVVRASIAKIPIVLASATPSVETEVNARKGRYTRIPLPSRFGGQHMPQIEAIDL FT RREPPMRGRFISPRLAEQIGFAIERREQALLFLNRRGYAPLTLCRACGHRFACTICDAWLVDHRFRQRLVCHHCGFSMPR FT PPACPHCGAEGSLVAVGPGVERLQEEAANLFPNARTMVLSSDLITSIETMRAELNEIAEGRVDIIIGTQLVAKGHNFPRL FT NLVGVVDADLGLSNGDPRAAERTFQLLNQVIGRAGRDQGRGVGFLQTHQPEHPVMKALVACDREAFYASEIDIRERTLYP FT PFGRLASLIISAGDRPTAEGFGRQLASAAPFDERVQVLGPAEAPLAVIKGRYRFRLLVKSVRGFDLSNYLRSWLAKGPKT FT KGNLKLEVDVDPQSFL* " FT gene complement(191082..193292) FT /locus_tag="Rpal_0176" FT /colour=2 FT CDS 193494..194465 FT /locus_tag="Rpal_0177" FT /product="integrase family protein" FT /note="PFAM: integrase family protein; integrase domain FT protein SAM domain protein" FT /note="SPTR: Q89X68 Tyrosine recombinase xerC. FT Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0446 site-specific tyrosine FT recombinase XerC " FT /note="COGs: COG4974 Site-specific recombinase XerD FT category=L" FT /note="InterPro IPR002104:IPR004107" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MAPSKSAPPPLELSCAAADLTAEMTKWLSHLRAERRLSGKTLEAYARDVRQFLQFLAEHWGGEVTLGRFARLEATDVRAF FT MAARRADEIAGRSLMRALAGMRSFGRFLEREGKGRVGALASVRAPKIKKSLPKPLPIAAAKRLADADERAGEERETWVLI FT RDAAVMALLYGSGLRISEALGLKRRDVPAAGKGDTLIVHGKGNKTRMVPVLQNVLAQIAEYAAACPYNLPPDGPMFVGAR FT GGPLSPRIIQLAMERLRGGLGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQVYTGIDTERLLEVYNSAH FT PRA* " FT gene 193494..194465 FT /locus_tag="Rpal_0177" FT /colour=2 FT CDS 194606..195196 FT /locus_tag="Rpal_0178" FT /product="putative membrane protein of unknown function" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0400 putative membrane protein of FT unknown function " FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MGAHESMEHAEHAEHASGSNKGIALLISVIALFLAFSETLGKGAQTEALAKNVEASNLWAFFQAKSIRRTTVQAVSEHAR FT LSLGTVPDEATKAALQKQIDDWQKTAARYRSEPETGEGSEQLAERAKHAEHERDLAMARYHHYEVASAAFQIGIVLASAT FT IITGMMVLAWLSGLLAVGGLGFMAIGLFAPHAVHLM* " FT gene 194606..195196 FT /locus_tag="Rpal_0178" FT /colour=11 FT misc_feature order(194669..194728,195044..195112,195122..195190) FT /colour=11 FT /locus_tag="Rpal_0178" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(195260..195802) FT /locus_tag="Rpal_0179" FT /product="conserved hypothetical protein" FT /note="SPTR: Bll0448 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0448 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKGRLWQPLWVLLAVLFLIEAWFWDHVEPLIARIVALIPLRELKERLARWVDHLSPAMTLPVFLVPVAPLYPLKLFALAL FT IAQGHWIAGLGIFAAAQVFGLGVAAFIFDVTKPKLLQLRWFAATYRWVIELRAKAHAIVAPIMAQIRAKLAELLKGDGDG FT WGSKVLRRIGALRRRIRTAR* " FT gene complement(195260..195802) FT /locus_tag="Rpal_0179" FT /colour=13 FT misc_feature complement(order(195479..195544,195566..195631,195731..195787)) FT /colour=11 FT /locus_tag="Rpal_0179" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(195842..197245) FT /locus_tag="Rpal_0180" FT /product="dihydrolipoamide dehydrogenase" FT /note="TIGRFAM: dihydrolipoamide dehydrogenase" FT /note="PFAM: FAD-dependent pyridine nucleotide-disulphide FT oxidoreductase; fumarate reductase/succinate dehydrogenase FT flavoprotein domain protein; pyridine FT nucleotide-disulphide oxidoreductase dimerisation region; FT HI0933 family protein; FAD dependent oxidoreductase" FT /note="SPTR: Dihydrolipoyl dehydrogenase - Bradyrhizobium FT japonicum" FT /note="KEGG: bja:bll0449 dihydrolipoamide dehydrogenase " FT /note="COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase FT complex dihydrolipoamide dehydrogenase (E3) category=C" FT /note="InterPro FT IPR000103:IPR000815:IPR001100:IPR001327:IPR003953:IPR004099:IPR004792:IPR006076:IPR006258:IPR012999:IPR013027" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MATYDLVVIGTGPGGYVCAIRAAQLGLKVAVVEKNATLGGTCLNVGCMPSKALLHASELFEEAGHSFAKMGIGVPAPKLD FT LPAMMNFKQQGIDGNVKGVEYLMKKNKIDVLVGKGKILGTGKVEVTGADGKASSVDTKSIVIASGSAVAQLKGIEIDEKR FT VVSSTGALSLDKVPGKLIVVGAGVIGLELGSVWRRLGAEVTVVEFLDRILPGMDGEVVKQFQRILEKQGFAFKLGAKVTG FT VDTSGAKLAVKVEAAAGGNPETLEADVVLVAIGRVPYTEGLGLKEAGVALDERGRVVIDDHFATSLKGVYAIGDVVRGPM FT LAHKAEDEGVAVAELIAGKAGHVNYDVIPGVVYTTPEVSSVGKTEEDLKQAGVAYTVGKFPFTANGRSKVNQTTDGFVKI FT LADAKTDRVLGVHIIGREAGEMIHEAAVLMEFGGSAEDLARTCHAHPTRSEAIKEAALTVGKRAIHM* FT " FT gene complement(195842..197245) FT /locus_tag="Rpal_0180" FT /colour=3 FT CDS complement(197277..198023) FT /locus_tag="Rpal_0181" FT /product="short-chain dehydrogenase/reductase SDR" FT /note="PFAM: short-chain dehydrogenase/reductase SDR; KR FT domain protein" FT /note="SPTR: Putative oxidoreductase - Bradyrhizobium sp. FT (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0397 putative oxidoreductase (YgfF), FT NAD(P)-binding domain " FT /note="COGs: COG1028 Dehydrogenase with different FT specificities (related to short-chain alcohol FT dehydrogenase) category=Q" FT /note="InterPro IPR002198:IPR002347:IPR002424:IPR013968" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MNDRVVIITGGSRGIGRATALGCAKRGFKVVVGYASNAAAADEVVAEIAASNGKAIAVKCDVGSEADILALFAAADAFGP FT LGALVNNAGIVGPTARVDEMSAERIQRMMAVNVTGSILCAREAVKRMSTRHGGKGGVIVNLSSVAAKLGSPNTYVDYAAS FT KGAVDSFTVGLGHEVAGEGIRVAAIRPGLIDTEIHASGGDPERAHRLSVNVPMKRVGRAEEIANAVVWLLSDEASYVTSA FT IIDVSGGR* " FT gene complement(197277..198023) FT /locus_tag="Rpal_0181" FT /colour=9 FT CDS complement(198031..198432) FT /locus_tag="Rpal_0182" FT /product="conserved hypothetical protein" FT /note="SPTR: Hypothetical Membrane Spanning Protein - FT Brucella melitensis" FT /note="KEGG: bcs:BCAN_A1965 hypothetical protein " FT /note="COGs: COG3686 membrane protein category=S" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPPMPTEITVLGWSVVLLIVQMFLASIPTTMELGGDYQAGPRDEPRTPTGRFAGRANRAFRNLLETYPAFVGLALALAIT FT GKAGGYAATASVVWLIARALYAPLYIIEIPFARSIVWFVSLLALIAMLVRLLS* " FT gene complement(198031..198432) FT /locus_tag="Rpal_0182" FT /colour=13 FT misc_feature complement(order(198040..198105,198145..198210,198340..198405)) FT /colour=11 FT /locus_tag="Rpal_0182" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(198491..199744) FT /locus_tag="Rpal_0183" FT /product="2-oxoglutarate dehydrogenase, E2 subunit, FT dihydrolipoamide succinyltransferase" FT /note="TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, FT dihydrolipoamide succinyltransferase" FT /note="PFAM: biotin/lipoyl attachment domain-containing FT protein; catalytic domain of components of various FT dehydrogenase complexes; E3 binding domain protein" FT /note="SPTR: 2-oxoglutarate dehydrogenase E2 component - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0396 dihydrolipoamide FT acetyltransferase " FT /note="COGs: COG0508 Pyruvate/2-oxoglutarate dehydrogenase FT complex dihydrolipoamide acyltransferase (E2) protein FT category=C" FT /note="InterPro FT IPR000089:IPR001078:IPR003016:IPR004167:IPR006255" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MTEIRVPTLGESVTEATIGRWFKKPGEAVAVDEPLVELETDKVTIEVPAPSAGTLGEIVAKDGETVAVGALLGQITDGAA FT PAKPAAAAPAKAAAPAAAPAPAAPAPAAAPAAKAPPSDAPLAPSVRRLSTESGVDASTVPGSGKDGRVTKGDMLAAIEKA FT ASAPTPVNQPAAAVQVRGPSPADDAAREERVKMTRLRQTIARRLKEVQNTAAMLTTFNEVDMTNVMALRAQYKDVFEKKH FT GAKLGFMGFFTKACVQALKDIPAVNAEMDGTDLIYKNYYHIGVAVGTDKGLVVPVVRDCDEKSIADIEKSIVDYGKRARD FT GQLKIEEMQGGTFTITNGGIYGSLMSTPILNAPQSGILGMHKIQERPVVIGGKIEVRPMMYLALSYDHRVIDGKEAVTFL FT VRVKESLEDPARLVLDL* " FT gene complement(198491..199744) FT /locus_tag="Rpal_0183" FT /colour=3 FT CDS complement(199849..202806) FT /locus_tag="Rpal_0184" FT /product="2-oxoglutarate dehydrogenase, E1 subunit" FT /note="TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit" FT /note="PFAM: dehydrogenase E1 component; Transketolase FT central region" FT /note="SPTR: 2-oxoglutarate dehydrogenase E1 component - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0395 alpha-ketoglutarate FT decarboxylase " FT /note="COGs: COG0567 2-oxoglutarate dehydrogenase complex FT dehydrogenase (E1) category=C" FT /note="InterPro IPR001017:IPR005475:IPR011603" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MSRQDANAAFALSSFLQGANATYIDDLYSRYESDPSSVDADWQAFFRSLKDAPGDIQKNAEGPSWEQANWPLTPRDELTS FT ALDGNWNQVEKAVGQKIQAKAQSRGVELSSADVLQATRDSVRALMLIRAYRMRGHFHAKLDPLGLSPAKDHEELDIRSYG FT FTEADLDRKIFLDHVLGLEYGSLREIVAICERTYCQTMGIEFLHISNGAQKAWIQERIEGPDKEISFTREGRRAILMKLI FT ESEGFEKFCDLKFTGTKRFGLDGGEALIPALEQIIKRGGNLGVREIVLGMPHRGRLNVLTQVMAKAHRALFHEFKGGSAN FT PDEVEGSGDVKYHLGASSDREFDHNKVHLSLTANPSHLEIVDPVVLGKVRAKQDQHGDLPEERISVLPLLMHGDAAFAGQ FT GVVAECFALSDLKGYRTGGSIHFIVNNQIGFTTYPRYSRSSPYPSDVAKMIDAPIFHVNGDDPEAVVFAAKIAVEYRQKF FT HKPVVIDMFCYRRHGHNEGDEPSFTQPLMYRKIAGHPTTLEIYSKRLIADGVITEGEVEKARADWRARLDAEFEAASSYR FT PNKADWLDGKWAGFKSADQEEEPRRGITGVDLPTLKEIGRRITKVPEGFRLHRTVQRFLENRARAIDSGNGLDWATGEAL FT AFCTMLLEGHRIRLSGQDSERGTFSQRHSVLIDQEDETRYTPFNHLSPDQGHYEVINSLLSEEAVLGFEYGYSLAEPNAL FT TLWEAQFGDFANGAQVLFDQFISSGERKWLRMSGLVCLLPHGYEGQGPEHSSARLERYLQMCAEDNMQVVYPTTPANYFH FT ALRRQLKREIRKPLILMTPKSLLRHKRAISRLEELGPDTSFHRVLLDDAQTLPDDKTKLVADAKIRRVVVCSGKVYYDLY FT DEREKRGIDDVYLLRVEQLYPVPVKTLVHELSRFKDAELVWCQEEPRNMGGWHFIEPYLEWVQNQIEAKHRRPRYVGRAA FT SAATATGLMSKHLAQLKAFLDEALR* " FT gene complement(199849..202806) FT /locus_tag="Rpal_0184" FT /colour=3 FT CDS complement(202934..203818) FT /locus_tag="Rpal_0185" FT /product="succinyl-CoA synthetase, alpha subunit" FT /note="TIGRFAM: succinyl-CoA synthetase, alpha subunit" FT /note="PFAM: CoA-binding domain protein; ATP-citrate FT lyase/succinyl-CoA ligase" FT /note="SPTR: Succinyl-CoA ligase [ADP-forming] subunit FT alpha - Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0394 succinyl-CoA synthetase, alpha FT subunit, NAD(P)-binding " FT /note="COGs: COG0074 Succinyl-CoA synthetase alpha subunit FT category=C" FT /note="InterPro IPR003781:IPR005810:IPR005811:IPR017440" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MSILIDSNTRVICQGFTGKNGTFHSEAAIAYGTKMVGGTSPGKGGSTHLGLPVFDTVREARDKTGADASVIYVPPPGAAD FT AICEAIDAEIPLIVCITEGIPVLDMVRVKRSLNGSKSRLIGPNCPGVMTAGECKIGIMPANIFKPGSVGIVSRSGTLTYE FT AVFQTSAEGLGQTTAVGIGGDPVKGTEFIDVLEMFLADDKTESIIMIGEIGGSAEEDAAQFLIDEAKRGRKKPMVGFIAG FT VTAPPGRRMGHAGAIISGGKGDAASKTAAMEAAGITVSPSPARLGKTLAEKLKS* " FT gene complement(202934..203818) FT /locus_tag="Rpal_0185" FT /colour=3 FT CDS complement(203883..205079) FT /locus_tag="Rpal_0186" FT /product="succinyl-CoA synthetase, beta subunit" FT /EC_number="6.2.1.5" FT /note="TIGRFAM: succinyl-CoA synthetase, beta subunit" FT /note="PRIAM: Succinate--CoA ligase (ADP-forming)" FT /note="PFAM: ATP-citrate lyase/succinyl-CoA ligase; FT ATP-grasp domain protein" FT /note="SPTR: Succinyl-CoA synthetase, beta subunit - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0404 succinyl-CoA synthetase subunit FT beta " FT /note="COGs: COG0045 Succinyl-CoA synthetase beta subunit FT category=C" FT /note="InterPro IPR005809:IPR005811:IPR011761:IPR013650" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MNIHEYQAKAVLREFGVPVGHGFPIFKASEAEAAAKQLGGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVK FT EFAKQMLGATLVTVQTGADGKQVNRLYIEEGSDIDKEFYLSLLVDRATSRISFVVSTEGGMSIEDVAHETPEKIVSFTVD FT PATGIMGHHGRTVAKALNLKGEQAKQAEAMVAKLYTAFVAKDMDMLEINPLVLTKQGDLKCLDAKISFDGNALYRHTDIQ FT ALRDETEEDAKEIEASKYDLNYVTLDGTIGCMVNGAGLAMATMDIIKLYGMSPANFLDVGGGASKEKVTAAFKIITADPN FT VKGILINIFGGIMKCDVIAEGVVAAVKEVGLDVPLVVRLEGTNVEAGKKIIKHSGLNVLPADNLDDAAQKIVAAVKGA* FT " FT gene complement(203883..205079) FT /locus_tag="Rpal_0186" FT /colour=3 FT CDS complement(205175..206143) FT /locus_tag="Rpal_0187" FT /product="malate dehydrogenase, NAD-dependent" FT /note="TIGRFAM: malate dehydrogenase, NAD-dependent" FT /note="PFAM: Lactate/malate dehydrogenase" FT /note="SPTR: A5E935 Malate dehydrogenase (EC 1.1.1.37). FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)." FT /note="KEGG: bbt:BBta_0392 malate dehydrogenase " FT /note="COGs: COG0039 Malate/lactate dehydrogenase FT category=C" FT /note="InterPro IPR001236:IPR001557:IPR011275" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MARDKIALIGSGQIGGTLAHLVGLKELGDVVLFDIAEGVPQGKALDIAESSPVDGFDSKLTGANSYEAIEGARVVIVTAG FT VPRKPGMSRDDLLSINLKVMEQVGAGIKKYAPDAFVICITNPLDAMVWALQKASGLPAKKVVGMAGVLDSARFRYFLADE FT FNVSVEDVTAFVLGGHGDTMVPLVKYSTVAGIPLPDLVKMGWTSQARLDEIVDRTRNGGAEIVNLLKTGSAFYAPASSAI FT AMAESYLKDKKRVVPVAAHLNGEYGVKDMYVGVPVVIGDKGVERIVEIELAGKDKEAFDKSVAAVQGLVEACKKIAPDLL FT GR* " FT gene complement(205175..206143) FT /locus_tag="Rpal_0187" FT /colour=3 FT CDS complement(206289..207473) FT /locus_tag="Rpal_0188" FT /product="AFG1-family ATPase" FT /note="PFAM: AFG1-family ATPase" FT /note="SPTR: Putative ATPase - Bradyrhizobium sp. (strain FT ORS278)" FT /note="KEGG: bra:BRADO0402 putative ATPase (YhcM) AFG1 FT family " FT /note="COGs: COG1485 ATPase category=R" FT /note="InterPro IPR005654" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSSPHSLRQQYQSLIASGSIEADPAQARAVQAFTLLNETLDGYKPPKKQGFFGRLFGGGDAGQAPPQGLYIHGEVGRGKT FT MLMDLFFDASPIALKRRSHFHEFMAETHDRINGFRQAIKRGDIPDADVMELTAASILDEAWLLCFDEFHVTDIADAMILG FT RLFTKLFELGTVVVATSNVAPDDLYKGGLNRSLFMPFIGQVKRHMRVIRLDARTDYRLEKFAGMKVWLAPDDAEATATID FT RAWHRITGTTKGEPRDISIKGRILHVPQADHHVARFSFADLCQKPLGASDYLRLAHEYHTLMIDHVPVMDYADRNAAKRF FT IALIDTLYDNSVKLMASAAAEPARLYRATEGFEALEFNRTVSRLTEMGSESYLALPHGRRDSTATGETTGLVET* FT " FT gene complement(206289..207473) FT /locus_tag="Rpal_0188" FT /colour=11 FT CDS complement(207556..208095) FT /locus_tag="Rpal_0189" FT /product="2'-5' RNA ligase" FT /note="TIGRFAM: 2'-5' RNA ligase" FT /note="PFAM: Phosphoesterase HXTX" FT /note="SPTR: Putative 2'-5' RNA ligase - Bradyrhizobium FT sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0401 putative 2'-5' RNA ligase " FT /note="COGs: COG1514 2'-5' RNA ligase category=J" FT /note="InterPro IPR004175:IPR014051" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MPRLFTGLEIPAEISQTLSSLRGGLPGARWVDPDDYHLTLRFIGDIDGVTANEIASTLFRVNRKPFEVTLQGLSSFGGKK FT PRAVVASVVPSKPLIELQAELERLMQRVGLDPEGRKFTPHVTLARLRGDVSSRDVADYLSIRGYFPSKVFKAERFVLYSA FT RASTGGGPYIVEAPYELTA* " FT gene complement(207556..208095) FT /locus_tag="Rpal_0189" FT /colour=7 FT CDS complement(208301..208915) FT /locus_tag="Rpal_0190" FT /product="lipolytic protein G-D-S-L family" FT /note="PFAM: lipolytic protein G-D-S-L family" FT /note="SPTR: Esterase - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0459 esterase " FT /note="COGs: COG2755 Lysophospholipase L1 and related FT esterase category=E" FT /note="InterPro IPR001087:IPR008265" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MAALPGQTARAETAAKPLKLVVLGDSLTAGYGLPAADAFPAKLQKALKAKGIDTEMVNAGVSGDTASGGLQRLDWSVPPD FT ADAVIVELGANDALRGTDPKVPRKALDEILKRLKARNLPVLLAGMLAPPNYGKDYAAQFDAIYPDLAKQYDVPLYPFFLD FT GVAAVSNLNQADGIHPTAAGVDIIVERILPKVEALLRPLLVQSR* " FT gene complement(208301..208915) FT /locus_tag="Rpal_0190" FT /colour=10 FT CDS 208995..209738 FT /locus_tag="Rpal_0191" FT /product="ABC transporter related" FT /note="PFAM: ABC transporter related" FT /note="SMART: AAA ATPase" FT /note="SPTR: Blr0460 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0460 probable ABC transporter FT ATP-binding protein " FT /note="COGs: COG4181 ABC-type transport system involved in FT lysophospholipase L1 biosynthesis ATPase component FT category=Q" FT /note="InterPro IPR003439:IPR003593" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MDSLIEPSSLAGGAPDSIAISNVNLSLGSGAARVHILKDISLRVGAGETIGLIGPSGSGKSTLLMVMAGLERPDSGQVVV FT DGTSFNGLDEDALARFRGRQIGIVFQSFHLIPTMTALENVAVPLELAGQAGAADRAARELTSVGLGERLHHYPSQLSGGE FT QQRVALARALAPDPAILVADEPTGNLDETTGKQIVDLLFAKHAERGMTLVLVTHDSALAQRCDRVVRLRSGRIDTTQPGS FT AARARSA* " FT gene 208995..209738 FT /locus_tag="Rpal_0191" FT /colour=9 FT CDS 209742..212312 FT /locus_tag="Rpal_0192" FT /product="protein of unknown function DUF214" FT /note="PFAM: protein of unknown function DUF214" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0550 protein of unknown function FT DUF214 " FT /note="COGs: COG3127 ABC-type transport system involved in FT lysophospholipase L1 biosynthesis permease component FT category=Q" FT /note="InterPro IPR003838" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTVLTETPPRIPSWSLPLRYALREMRGGLNGFYVFIACIALGVMAIAGVGSVAASLGDGLAREGRTLLGGDAAFSLIQRE FT AMPNEVAFLRSRGDVSVAATMRGMARTDDGRSALVELKAVDGAYPLLGDLKLEPPMPVADLLARRDDAFGAAADPALLAR FT LDLKIGDKVTIGSATFQIRSAVAAEPDKLSGNIGFGPRFLISDDGLRATQLLQPGSLVRWTYRVRLPDNGTDDRAAQRLV FT DDTRAALPQAGWEIRTRGNASPQLERTITRFTQFLTLVGLAALVVGGVGVANAVKSHIDRRRDVIATLKAVGATGRDVFA FT IYLTQVIVLALIGAVIGLALGAAMPFALVGLFGQLLPLPVVAALHPGELALSLVYGLLTALAFGLWPLAQVRDVPVATLF FT REAATADSHRPRLRHVALIAAVVAVLLAVVVGLAYDKRVALAVIGATLAIFVLLRGVAAGLMAIARRLPRSRITMLRLAI FT ANIHRPGALTPSVVLSLGLGLAVLVTVAQIDGNLRRQFSAALPEKAPTFFFIDIPSSKTDQFGTFLRQIAPNATLEDVPM FT LRGRIVAARGVRVEDLKPAPDAEWVLQSDRGLTYAADIPAGSKVVEGRWWPKDYSGPPLVSFDKKLAQGLGLSIGDKVTV FT NVLGREITATISNLRSIDWQSLGINFVLVFSPDTFRGAPHTHIATLTESGSTPQSDAAVIKQVADRFPMVTSVRVREALE FT TVGGVVSNLVLAVRGASAVTLISAILVLGGALAAGHRHRVYDAVILKTLGATRGRLIGAFALEYALIGLATAAFAVLAGS FT AAAWLIVTRLMTLSFAWQAGSAASVVVAALVVTVGLGLIGTWLALNQKPASVLRNL* FT " FT gene 209742..212312 FT /locus_tag="Rpal_0192" FT /colour=9 FT misc_feature order(209835..209903,210555..210623,210720..210788,210846..210914,210972..211040,211068..211136,211197..211265,211938..212006,212067..212162,212205..212273) FT /colour=11 FT /locus_tag="Rpal_0192" FT /note="10 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS join(212653..213120,215381..215704) FT /product="None" FT /locus_tag="Rpal_0193" FT /colour=8 FT /pseudo FT /translation="MSDLDRNYTSPFGRAAGRVETATVDAGLRAYMLRIYNYMTIGLAI FT TGLAALGVYMGAVTTDAGAAAARVGNTMLTSFGVAMFVSPLKWVFILAPLAMVFVISFG FT INRLKPATAQLLFWAFSALMGISLSSIFLVYTHTSIVRVFFITAAAFGALSLYGYTTKR FT DMTGMGSFLIMGLFGVVIASLVNLFVASSMLQFIVSVVGVLVFAGLTAWDTQRLKNDYI FT YGYGSMGGDVAERAAITGALSLYLNFINLFTLLLQLLGQKE*" FT gene 212653..215704 FT /locus_tag="Rpal_0193" FT /colour=8 FT /pseudo FT CDS 214110..214436 FT /product="None" FT /locus_tag="Rpal_0194" FT /pseudo FT /translation="SFTLPQALRAQGLLKEAEHVESQAAETVLTPDECQLLGYLDKGKR FT KRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALW*GWEALQSKLDGFLAAKDLMVQ FT GIKI*" FT gene 214110..214436 FT /locus_tag="Rpal_0194" FT /pseudo FT CDS 214465..215259 FT /locus_tag="Rpal_0195" FT /product="aminoglycoside phosphotransferase" FT /note="PFAM: aminoglycoside phosphotransferase" FT /note="SPTR: Neomycin phosphotransferase - Human FT immunodeficiency virus 1" FT /note="KEGG: pap:PSPA7_3721 aminoglycoside FT 3'-phosphotransferase " FT /note="COGs: COG3231 Aminoglycoside phosphotransferase FT category=J" FT /note="InterPro IPR002575" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGRSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAV FT LDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDE FT EHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRF FT LVLYGIAAPDSQRIAFYRLLDEFF* " FT gene 214465..215259 FT /locus_tag="Rpal_0195" FT /colour=7 FT CDS 215859..216389 FT /locus_tag="Rpal_0196" FT /product="GCN5-related N-acetyltransferase" FT /note="PFAM: GCN5-related N-acetyltransferase" FT /note="SPTR: GCN5-related N-acetyltransferase - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0238 GCN5-related FT N-acetyltransferase " FT /note="COGs: COG1247 Sortase and related acyltransferase FT category=M" FT /note="InterPro IPR000182" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSNALIRPATSADLPAITAIYEQAVRFGTATFELTPPDLAEMTQRFATLTEAGFPYLAAEADGAIAGYAYAGPYRPRPAY FT RFTVENSIYLDPAAHRRGIGSALLRDLIAGCTERGFRQMIAVIGDSANAASIALHRKAGFAPIGTHADVGFKFGRWLDSV FT LMQRTLGDGGRTVPET* " FT gene 215859..216389 FT /locus_tag="Rpal_0196" FT /colour=9 FT CDS complement(216449..216817) FT /locus_tag="Rpal_0197" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0406 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MDLISGEADPSESRAAERPGTAPLQGLVTFNRLELNRILNLYGRMVAAGEWRDYAIDFLKDTAVFSIFRRASEVPIYRIV FT KDPRLARKQGAYSVIGASGQILRRGHELERVLLVIDRKLALV* " FT gene complement(216449..216817) FT /locus_tag="Rpal_0197" FT /colour=13 FT CDS complement(217221..217976) FT /locus_tag="Rpal_0198" FT /product="protein of unknown function DUF1223" FT /note="PFAM: protein of unknown function DUF1223" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0407 protein of unknown function FT DUF1223 " FT /note="COGs: COG5429 Uncharacterized secreted protein FT category=S" FT /note="InterPro IPR010634" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MNGVGGFSRWSGALGLCVTIATADLAAAEPRAVVELFTSQGCSSCPPADRIIGELARDPSVIALSLPIDYWDYLGWKDTL FT ADSRFTARQKAYSQVRGDRDVFTPQVVVNGSAHLVGSNRAGIDSAIKTTDKTGGVMTVPVSVAVEGKEIKVSVAAAPQGE FT TAKSGEVWICAVSKAIPIEIGRGENRGRHVTYHNVVRNLLKVGDWTGAAEHWTVPLENVVGDGVDAAAVYVQNGSREKPG FT AMLGAAFTSLN* " FT gene complement(217221..217976) FT /locus_tag="Rpal_0198" FT /colour=13 FT sig_peptide complement(217896..217976) FT /colour=11 FT /locus_tag="Rpal_0198" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.859) with cleavage site probability 0.645 at FT residue 27" FT CDS complement(218143..220860) FT /locus_tag="Rpal_0199" FT /product="aconitate hydratase 1" FT /note="TIGRFAM: aconitate hydratase 1" FT /note="PFAM: aconitate hydratase domain protein" FT /note="SPTR: Aconitase - Bradyrhizobium sp. (strain BTAi1 FT / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0382 aconitate hydratase " FT /note="COGs: COG1048 Aconitase A category=C" FT /note="InterPro IPR000573:IPR001030:IPR006249" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MTSLDSFKCRKILKVGSKSYVYYSLPTAEKNGLKGISRLPYSMKVLLENLLRNEDDRTVKKADIMAVAKWMRKKALEHEI FT AFRPARVLMQDFTGVPAVVDLAAMRNAMQKLGGDAEKINPLVPVDLVIDHSVIVNFFGNNQAFKKNVAEEYKQNQERYEF FT LKWGQKAFSNFAVVPPGTGICHQVNLEYLAQTVWTKKEKMTIVRKTGTFEVAYPDTLVGTDSHTTMVNGLAVLGWGVGGI FT EAEAAMLGQPLSMLLPEVVGFKLKGALKEGVTATDLVLTVTQMLRKQGVVGKFVEFFGPGLDNLSVADKATIANMAPEYG FT ATCGFFPVDGETIDYLKTSGRASARVALVEKYAKAQGLFRTAKSPDPVFTVTLTLDLADVVPSLAGPKRPEGRVALPAVA FT EGFTTAMDAEYKKALDGARYKVEGRNFDIGHGDVVIAAITSCTNTSNPSVLIGAGLLARNAAAKGLKAAPWVKTSLAPGS FT QVVAEYLANSGLQKDLDKVGFNLVGFGCTTCIGNSGPLPEEISKSINDNGIVAAAVLSGNRNFEGRVSPDVQANYLASPP FT LVVAYALAGSVTKNLAVDPIGTGKDGKPVYLKDIWPSTKEINAFVKKYVTSKIFKARYADVFKGDTNWRKIKTVESETYK FT WNMSSTYVQNPPYFEGMTKQPEPITDVVDARVLALFGDKITTDHISPAGSIKLTSPAGKYLTERQVRPADFNQYGTRRGN FT HEVMMRGTFANIRIKNHMLKGADGNIPEGGLTKHWPDGEQMSIYDAAMKYQEEKVPLVVFAGAEYGNGSSRDWAAKGTRL FT LGVRAVICQSFERIHRSNLVGMGVLPLTFEEGTSWASLGLKGDEKVTIRGLEGDLKPRQMLEAEITSAAGKRKRVPLLCR FT IDTLDELDYYRNGGILHYVLRKLAA* " FT gene complement(218143..220860) FT /locus_tag="Rpal_0199" FT /colour=3 FT CDS 221076..221678 FT /locus_tag="Rpal_0200" FT /product="heme exporter protein CcmA" FT /note="TIGRFAM: heme exporter protein CcmA" FT /note="PFAM: ABC transporter related" FT /note="SMART: AAA ATPase" FT /note="SPTR: P30963 Cytochrome c biogenesis ATP-binding FT export protein ccmA (EC 3.6.3.41) (Heme exporter protein FT A). Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0467 heme exporter protein A " FT /note="COGs: COG4133 ABC-type transport system involved in FT cytochrome c biogenesis ATPase component category=O" FT /note="InterPro IPR003439:IPR003593:IPR005895" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRLSGRDLRCVRGGREVFAGLAFEASGGEALALVGHNGAGKTSLLRLIAGLLTPEAGTITLDGGEPDTPVAEQAHYLGHR FT DALKPSLSVGENLGFWRDFLGGERTDLSAGIKAVGLGHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVK FT GQELFVGLMQDHLTRGGIIVAATHTPLGIPVREQRIGAAT* " FT gene 221076..221678 FT /locus_tag="Rpal_0200" FT /colour=9 FT CDS 221675..222343 FT /locus_tag="Rpal_0201" FT /product="heme exporter protein CcmB" FT /note="TIGRFAM: heme exporter protein CcmB" FT /note="PFAM: cytochrome c-type biogenesis protein CcmB" FT /note="SPTR: P30964 Heme exporter protein B (Cytochrome FT c-type biogenesis protein cycW). Bradyrhizobium FT japonicum." FT /note="KEGG: bja:blr0468 heme exporter protein B " FT /note="COGs: COG2386 ABC-type transport system involved in FT cytochrome c biogenesis permease component category=O" FT /note="InterPro IPR003544" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTALGAIIRRDIRIALRVGGGALIGVLFFLTVVVLMPFAVGPDLALLKRLGPAILWLGALLASLLTLDRLFTADAEDGSL FT DLIVMSRTPLELTCAAKALAHWLAAGLPLIVATPVLGLLLNLDGSASLAVMATLLAGTPALTFTGMIGAALAVALRRGGL FT LLAVLVLPLSIPVLIFGVSASQAAIVGPVSFGTPFSILCAISLLSLVIGPFAAAASLRQGLD* FT " FT gene 221675..222343 FT /locus_tag="Rpal_0201" FT /colour=9 FT misc_feature order(221711..221779,221822..221875,221966..222034,222062..222130,222149..222217,222245..222313) FT /colour=11 FT /locus_tag="Rpal_0201" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 222436..223170 FT /locus_tag="Rpal_0202" FT /product="heme exporter protein CcmC" FT /note="TIGRFAM: heme exporter protein CcmC" FT /note="PFAM: cytochrome c assembly protein" FT /note="SPTR: Cytochrome c-type biogenesis protein CcmC - FT Nitrobacter sp. Nb-311A" FT /note="KEGG: nwi:Nwi_0320 cytochrome c-type biogenesis FT protein CcmC " FT /note="COGs: COG0755 ABC-type transport system involved in FT cytochrome c biogenesis permease component category=O" FT /note="InterPro IPR002541:IPR003557" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MKLTELANPTRFLTLAGRLLPWLAAATALALAAGLTQGMLAPDDYQQGATVKIMFVHVPNAWLAMFVWGVMSVASLGTLV FT WRHPLADVAAKTAAPIGAAFTFLALVTGSLWGRPMWGTYWEWDARLTSMLVLFLMYLGLIALWRAVEDPSRAARAAAVLT FT LVGAVNLPIIKFSVDWWNTLHQPASVVRMGGSTLDKAFLIPLLVTAIGFSLLFLTLHLAAMRNEILRRRVRSLQMMQASR FT AEAA* " FT sig_peptide 222436..222534 FT /colour=11 FT /locus_tag="Rpal_0202" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.998) with cleavage site probability 0.895 at FT residue 33" FT gene 222436..223170 FT /locus_tag="Rpal_0202" FT /colour=9 FT misc_feature order(222490..222558,222616..222675,222709..222768,222811..222864,222898..222966,223024..223092) FT /colour=11 FT /locus_tag="Rpal_0202" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 223170..223343 FT /locus_tag="Rpal_0203" FT /product="heme exporter protein CcmD" FT /note="TIGRFAM: heme exporter protein CcmD" FT /note="PFAM: Heme exporter protein D (CcmD)" FT /note="SPTR: Heme exporter protein D - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0412 heme exporter protein D (CcmD) FT " FT /note="InterPro IPR007078" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MFGKYADFIVSSYAATAIVVLLLIGWVVLDYRKQKARLRDLEARGAVRRSGRSAIDH*" FT gene 223170..223343 FT /locus_tag="Rpal_0203" FT /colour=11 FT misc_feature 223197..223256 FT /colour=11 FT /locus_tag="Rpal_0203" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 223360..223956 FT /locus_tag="Rpal_0204" FT /product="periplasmic protein thiol/disulphide FT oxidoreductase DsbE" FT /note="TIGRFAM: periplasmic protein thiol/disulphide FT oxidoreductase DsbE" FT /note="PFAM: alkyl hydroperoxide reductase/ Thiol specific FT antioxidant/ Mal allergen; Redoxin domain protein; FT Thioredoxin domain" FT /note="SPTR: P30960 Thiol:disulfide interchange protein FT cycY precursor (Cytochrome c biogenesis protein cycY). FT Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0471 thiol:disulfide interchange FT protein " FT /note="InterPro FT IPR000866:IPR004799:IPR006662:IPR011594:IPR013740:IPR013766" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSDTFDPASPKRRSWLVVLPALLFAGLAVLFWFRLGDSDVSRIPSALIGRPAPQTPLPPLDGLSRDGSQVAGLDPAMFKG FT KVSVVNVWASWCVPCHDEAPLLMTLAQDTRIQLVGIDYKDKPDNARRFLGRYGNPFAAVGVDASGRAAIEWGVYGVPETF FT VIGRDGKIAYKLVGPITPDNIEKVLKPEISKALAAPQS* " FT gene 223360..223956 FT /locus_tag="Rpal_0204" FT /colour=11 FT misc_feature 223402..223458 FT /colour=11 FT /locus_tag="Rpal_0204" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 224096..224479 FT /locus_tag="Rpal_0205" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein precursor - FT Methylobacterium extorquens PA1" FT /note="KEGG: mex:Mext_2496 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MGTSTFRRLTLAPLAAAVALGLLASAPAMAQAPQPATPPTAKSDKMAPPPKAETKAAAPAKSEKVELLDINSATAEQLDA FT LPGVGKAYSAAIIKGRPYKGKDELVQKKIVPQKTYDGIKDKIIAKQK* " FT sig_peptide 224096..224188 FT /colour=11 FT /locus_tag="Rpal_0205" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 1.000 at FT residue 31" FT gene 224096..224479 FT /locus_tag="Rpal_0205" FT /colour=13 FT CDS complement(224619..225236) FT /locus_tag="Rpal_0206" FT /product="intracellular septation protein A" FT /note="TIGRFAM: intracellular septation protein A" FT /note="PFAM: Intracellular septation protein A" FT /note="SPTR: Q1QR53 Probable intracellular septation FT protein. Nitrobacter hamburgensis (strain X14 / DSM FT 10229)." FT /note="KEGG: nha:Nham_0403 intracellular septation protein FT A " FT /note="COGs: COG2917 Intracellular septation protein A FT category=D" FT /note="InterPro IPR006008" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTDDLLKPNRPHPLFKLATELGPLLVFFIVNAKFHLFAATGAFMVAVVAAVIASYVVTRHVPVMALVTAVVVLVFGTLTL FT VLHDETFIKMKPTIVYSLFGAVLGGGLLFGRSFIAIMFDQVFNLTAAGWRKLTLRWALFFFAMALLNEAVWRTQSTDFWV FT NFKVFGVVPLTMLFALLQMPLTKRYAAEPATLEQSAADEGDVSGR* " FT gene complement(224619..225236) FT /locus_tag="Rpal_0206" FT /colour=9 FT misc_feature complement(order(224697..224762,224784..224840,224886..224951,224991..225056,225069..225134)) FT /colour=11 FT /locus_tag="Rpal_0206" FT /note="5 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(225233..226180) FT /locus_tag="Rpal_0207" FT /product="signal recognition particle-docking protein FT FtsY" FT /note="TIGRFAM: signal recognition particle-docking FT protein FtsY" FT /note="PFAM: GTP-binding signal recognition particle SRP54 FT G- domain; GTP-binding signal recognition particle SRP54 FT helical bundle" FT /note="SMART: AAA ATPase" FT /note="SPTR: Bll0473 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0473 probable cell division protein " FT /note="COGs: COG0552 Signal recognition particle GTPase FT category=U" FT /note="InterPro IPR000897:IPR003593:IPR004390:IPR013822" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSDTPENSKQSWWRRLSSGLKRTSSSIGTALSEFVSKRKLDRAMLEEIEDVLLRADLGTEVAARIAKAVGEGRYDKMISA FT SDVKEIVAAEVEKVLAPVAQPLEVDAGNKPFVILMVGVNGSGKTTTIGKLSARFASEGHKVMLAAGDTFRAAAIDQLKVW FT GDRTGTPVVAGAQGSDAAGLAFNALTAAKEQGRDVLLIDTAGRLQNRTELMSELEKVVRVIKKVDATAPHAVLLVLDATV FT GQNALSQVEAFTKTAGVTGLVMTKLDGTARGGILVAIAEKHKLPVHFIGVGEGVEDLAPFTARDFAKAIAGTEAA* FT " FT gene complement(225233..226180) FT /locus_tag="Rpal_0207" FT /colour=9 FT CDS 226209..227177 FT /locus_tag="Rpal_0208" FT /product="pseudouridine synthase" FT /note="PFAM: pseudouridine synthase" FT /note="SPTR: Pseudouridine synthase - Bradyrhizobium sp. FT (strain ORS278)" FT /note="KEGG: bra:BRADO0385 putative RNA pseudouridine FT synthase (uracil hydrolyase) " FT /note="COGs: COG0564 Pseudouridylate synthase 23S FT RNA-specific category=J" FT /note="InterPro IPR006145:IPR006224" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MNESHPDQFEPPELTPDEIQARVLYRDGLMLVIDKPPGLPVHRGPKGGPNLEASFDALRYGLPRPPVLAHRLDRDTSGCL FT VLGRHRKATATLGLLFKHSRISKTYWAIVEGGPTEDQGSIDLPIAKLNAERGWWQKVDPEGLPSLTKWRVMGRSGVLPAA FT ATTTSATSAPIRDATTSGSPPPCGEGSGVGVHSGSLTSGRPHPNPLPRAGEGVRPARGEADNLSRKPGAILGAPPPTQLT FT WLALEPITGRTHQLRVHCAAMGWPILGDNIYGNGPRFGEPRLHLHAREIVIPLSRNKPPVVVTAPPPTHMHPRLSACGWT FT AD* " FT gene 226209..227177 FT /locus_tag="Rpal_0208" FT /colour=7 FT CDS 227541..229493 FT /locus_tag="Rpal_0209" FT /product="acetate/CoA ligase" FT /note="TIGRFAM: acetate/CoA ligase" FT /note="PFAM: AMP-dependent synthetase and ligase" FT /note="SPTR: Q89WV5 Acetyl-coenzyme A synthetase (EC FT 6.2.1.1) (Acetate--CoA ligase) (Acyl- activating enzyme). FT Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0573 acetyl-CoA synthetase " FT /note="COGs: COG0365 Acyl-coenzyme A FT synthetase/AMP-(fatty) acid ligase category=I" FT /note="InterPro IPR000873:IPR002048:IPR011904" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MSEKIYDVPAEWASRAFVDDAKYRQMYERSVTDPTGFWAEHAKRVDWIKAPTKIDNWSFAPGNVSIKWFEDGVLNAAYNC FT IDRHLDKRGDQVAIIWEGDDPSQSRSITYRELHDEVCKFANILRNRNVGKGDRVTIYLPMIPEAAFAMLACARIGAIHSV FT VFAGFSPDSLAGRINDCNSKIVITADEGLRGGRKVPLKANVDAALKKCDGVDWVMVVKRTGAAVEMDDVRDFWYHEAAEV FT VTTECPVEHMHAEDPLFILYTSGSTGQPKGVLHTTGGYLVFASMTHQYVFDYHDGDIYWCTADVGWVTGHSYILYGPLAN FT GATTLMFEGVPNYPTNSRFWEVIDKHKVNIFYTAPTAIRALMQAGDEPVKKTSRKSLRLLGSVGEPINPEAWEWYHRVVG FT EDRCPIVDTWWQTETGGILITPLPGATKLKPGSATRPFFGVVPEILDPEGNVLEGECTGNLCLARSWPGQMRTVYGDHAR FT FEQTYFSAYKGKYFTGDGCRRDADGFYWITGRVDDVINVSGHRMGTAEVESSLVAHPKVSEAAVVGYPHDIKGQGIYAYV FT TLMAGEEPTEDLRKELVAWVRKDIGPIASPDLIQFAPGLPKTRSGKIMRRILRKIAEDEPSSLGDTSTLADPAVVDDLVE FT HRQNKHHKAS* " FT gene 227541..229493 FT /locus_tag="Rpal_0209" FT /colour=5 FT CDS 229876..230403 FT /locus_tag="Rpal_0210" FT /product="ErfK/YbiS/YcfS/YnhG family protein" FT /note="PFAM: ErfK/YbiS/YcfS/YnhG family protein" FT /note="SPTR: Blr0574 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0574 hypothetical protein " FT /note="COGs: COG1376 conserved hypothetical protein FT category=S" FT /note="InterPro IPR005490" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSFGFRSAKLAMVAVVLAGASVLTAPRAEARPDLVVFRGDYSPGTIVVRTGERRLYLVVEPGHAVRYPVGVGKAGKQWAG FT VTKIDGKFRNPAWAPPAEVKRDVPTIPDVIPGGSPANPMGVAAMTLAGGEYAIHGTNRPQSIGGFVSYGCIRMLNDDITD FT LYERVPVGTQVVVMR* " FT sig_peptide 229876..229968 FT /colour=11 FT /locus_tag="Rpal_0210" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.997) with cleavage site probability 0.575 at FT residue 31" FT gene 229876..230403 FT /locus_tag="Rpal_0210" FT /colour=13 FT CDS complement(230478..231398) FT /locus_tag="Rpal_0211" FT /product="OmpA/MotB domain protein" FT /note="PFAM: OmpA/MotB domain protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0242 hypothetical protein " FT /note="COGs: COG2885 Outer membrane protein and related FT peptidoglycan-associated (lipo)protein category=M" FT /note="InterPro IPR006665" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSDFRGQRREVNENGRIVITEPGRIIVRDPSGQEFIRHNEVDRFRYGARDIRTEQIRGGGTRTIVVRPDGTEIINITGDD FT GQLMRRIRRDRDGREIIIIDNSYGPRDRANFYVDLPPPVIRIPRDRYIVDYEDASPELIYETLEAPPVERIERRYTMDEI FT RYSPAVRQRMPSIDLNTINFDLGSWDIPPDQAAKLQAIADGLNRAIQRNPREVFLIEGHTDAVGNDTDNLSLSDRRAEAA FT AALLTQQFGVPAENLTSQGYGEQYLKIQTQAPERQNRRVTIRRITPLLNGGQAALPPPPPGVAPPR* FT " FT gene complement(230478..231398) FT /locus_tag="Rpal_0211" FT /colour=9 FT CDS 231500..232618 FT /locus_tag="Rpal_0212" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - Emericella FT nidulans (Aspergillus nidulans)" FT /note="KEGG: ani:AN5649.2 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VPAERQRDLPAADRAAAEPAAVGRAAGQRRDRRRERPDRLADAAGDRRRGRRVADRVRRTVGRRARRRGPTDSPAKSGRP FT AARPRGPVSVPQQAADWRPQAGAADRDAALRPAAGSCPAQSHSAECPALLEADRGARPGAAWRHPAWQHPARPHWAEQHR FT AAGHDAAVLRLRAARADGRERRRAAAQPDAQQAQRSAEPRASEPAEVAEPHAEEAAERCGSAAEAEEAQRAWARAPERLP FT AAEEAAVQPAEEQAAGAAARHGAELRPAGAAERSGRPWAVQAQGADRAAALPWPFPRTGPALGRPAPPARAASARTRSRP FT PRDDRSAIPASAPWSRAVQHLTSSSNRPSMEQADCARRSRTVSRRVPINDKA* " FT gene 231500..232618 FT /locus_tag="Rpal_0212" FT /colour=13 FT CDS complement(232778..233035) FT /locus_tag="Rpal_0213" FT /product="conserved hypothetical protein" FT /note="SPTR: Bsr0520 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bsr0520 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAPGDPQEVPNDPGPVTPPPEVPPSTPGTPTEPPLEQPPGNPNPDIPPPIEEPGAPPQPNELPGYMPAEVPMQSPGRGVPNPGVA*" FT gene complement(232778..233035) FT /locus_tag="Rpal_0213" FT /colour=13 FT CDS complement(233035..233523) FT /locus_tag="Rpal_0214" FT /product="pyridoxamine 5'-phosphate oxidase-related FT FMN-binding" FT /note="PFAM: pyridoxamine 5'-phosphate oxidase-related FT FMN-binding" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0235 hypothetical protein " FT /note="COGs: COG3871 Uncharacterized stress protein FT (general stress protein 26) category=R" FT /note="InterPro IPR000192:IPR000659:IPR011576" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MAATMNEGNAQHAWDLMKKITFAMLATRDGEKIRSRPMAAYVRPEEGAIYFLTDVRRHKDEEIAQDHHVNLGFANASAQK FT YVSVTGYAAISDDRAKIKELFGTEAKAWWDSPDDPNIRVLKVTPEEAEYWDSPGSLISYAKMMVAAATGSRPDLGENAKV FT AI* " FT gene complement(233035..233523) FT /locus_tag="Rpal_0214" FT /colour=11 FT CDS complement(233760..234542) FT /locus_tag="Rpal_0215" FT /product="succinate dehydrogenase and fumarate reductase FT iron-sulfur protein" FT /EC_number="1.3.5.1" FT /note="TIGRFAM: succinate dehydrogenase and fumarate FT reductase iron-sulfur protein" FT /note="PRIAM: Succinate dehydrogenase (ubiquinone)" FT /note="SPTR: Succinate dehydrogenase iron-sulfur protein FT subunit - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0515 succinate dehydrogenase FT iron-sulfur subunit " FT /note="COGs: COG0479 Succinate dehydrogenase/fumarate FT reductase Fe-S protein subunit category=C" FT /note="InterPro IPR001041:IPR001450:IPR004489:IPR006058" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MVEFALPKNSKIVGGKTWPKPEGATEVREFRVYRWNPDDGKNPSVDTYYVDKHDCGPMVLDGLIWIKNNIDPTLTFRRSC FT REGVCGSCAMNIDGENTLACTKAMDDVRDDAVKINPLPHQPVVKDLVPDLTNFYAQYASIQPWLQTVTPTPQKEWRQSHS FT DREKLDGLYECILCACCSTSCPSYWWNSDRFLGPAALLQATRWVEDSRDEATGERLDNLEDPFRIYRCHTIMNCAKACPK FT GLNPSEAIANLKLKLVERQI* " FT gene complement(233760..234542) FT /locus_tag="Rpal_0215" FT /colour=3 FT CDS complement(234650..236473) FT /locus_tag="Rpal_0216" FT /product="succinate dehydrogenase, flavoprotein subunit" FT /EC_number="1.3.5.1" FT /note="TIGRFAM: succinate dehydrogenase, flavoprotein FT subunit; succinate dehydrogenase or fumarate reductase, FT flavoprotein subunit" FT /note="PRIAM: Succinate dehydrogenase (ubiquinone)" FT /note="PFAM: fumarate reductase/succinate dehydrogenase FT flavoprotein domain protein; FAD dependent oxidoreductase; FT FAD-dependent pyridine nucleotide-disulphide FT oxidoreductase" FT /note="SPTR: Succinate dehydrogenase subunit A - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0230 succinate dehydrogenase FT flavoprotein subunit " FT /note="COGs: COG1053 Succinate dehydrogenase/fumarate FT reductase flavoprotein subunit category=C" FT /note="InterPro FT IPR003952:IPR003953:IPR004112:IPR006076:IPR011281:IPR013027:IPR014006" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MAANVNGAPAAGGYAYPIEDHTYDVVVVGAGGAGLRAVVGCSEAGLRTACITKVFPTRSHTVAAQGGISASLGNMHKDDW FT RWHMYDTVKGSDWLGDQDSIEYMVRNAPEAVYELEHWGVPFSRTEDGKIYQRPFGGMTMDFGKGQAQRTCAAADRTGHAM FT LHTMYGQALRHSAEFYIEFFAIDLIMDDQGCCRGVVALKLDDGTIHRFKAQTTILATGGYGRAYASCTSAHTCTGDGGAM FT ALRAGLPLQDMEFVQFHPTGIYGSGCLVTEGARGEGGYLVNSEGERFMERYAPSAKDLASRDVVSRAMTIEMREGRGVGK FT KKDHIFLHLDHLAPEVLHERLPGISESARIFAGVDVTREPIPILPTVHYNMGGIPTNFHGEVVTKKDGDDNAVVPGLMAI FT GEAACVSVHGANRLGSNSLIDLVVFGRAAALRCAEKLVPNGKQPELPASSADMSLSRLDKYRYAKGGTPTAKLRERMQHV FT MQNNCAVFRTGEVLAEGKELIANVHGSVGDVGVSDRTLVWNSDLVETLEFDNLIVQAVVTMNSAANRTESRGAHAREDFP FT DRDDANWMKHTLAWIGDKGDVTIDYRPVHDYTMTNDVQYIPPKPRVY* " FT gene complement(234650..236473) FT /locus_tag="Rpal_0216" FT /colour=3 FT CDS complement(236477..236890) FT /locus_tag="Rpal_0217" FT /product="succinate dehydrogenase, hydrophobic membrane FT anchor protein" FT /note="TIGRFAM: succinate dehydrogenase, hydrophobic FT membrane anchor protein" FT /note="PFAM: succinate dehydrogenase cytochrome b subunit" FT /note="SPTR: Succinate dehydrogenase subunit D - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_3617 succinate dehydrogenase, FT cytochrome b subunit " FT /note="COGs: COG2142 Succinate dehydrogenase hydrophobic FT anchor subunit category=C" FT /note="InterPro IPR000701:IPR014312" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MSSDAHGKRTPTSMRTPIGKVRKFGPAGSGTSDFWQQRITGVAMALLILPTIVVIMMLLGRNQAAAAQILGSPLISLIMI FT LFIIASAIHMKIGMQVVIEDYVQNEKLKLVTIMANNFFSIAVALAAIFAIFKMASGV* FT " FT gene complement(236477..236890) FT /locus_tag="Rpal_0217" FT /colour=3 FT misc_feature complement(order(236498..236563,236627..236692,236708..236773)) FT /colour=11 FT /locus_tag="Rpal_0217" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(236887..237285) FT /locus_tag="Rpal_0218" FT /product="succinate dehydrogenase, cytochrome b556 FT subunit" FT /note="TIGRFAM: succinate dehydrogenase, cytochrome b556 FT subunit" FT /note="PFAM: succinate dehydrogenase cytochrome b subunit" FT /note="SPTR: Succinate dehydrogenase membrane anchor FT subunit - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0512 succinate dehydrogenase FT cytochrome b-556 subunit " FT /note="COGs: COG2009 Succinate dehydrogenase/fumarate FT reductase cytochrome b subunit category=C" FT /note="InterPro IPR000701:IPR014314" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MTARIERPLSPHMQAYRWSLTMTMSIVHRATGIALYSGTLLLAWWLIACAAGPTAYANVQAFTGSWIGRLIVFGYTWSLM FT HHMLSGVRHFVWDLGYGFKTADREWLTWAALIGGIVLTVLLWVIAYSMGVAR* " FT gene complement(236887..237285) FT /locus_tag="Rpal_0218" FT /colour=3 FT misc_feature complement(order(236905..236970,237010..237075,237121..237186)) FT /colour=11 FT /locus_tag="Rpal_0218" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(237112..237285) FT /colour=11 FT /locus_tag="Rpal_0218" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.630) with cleavage site probability 0.412 at FT residue 58" FT CDS 237664..238608 FT /locus_tag="Rpal_0219" FT /product="cation diffusion facilitator family transporter" FT /note="TIGRFAM: cation diffusion facilitator family FT transporter" FT /note="PFAM: cation efflux protein" FT /note="SPTR: Cation diffusion facilitator family FT transporter - Methylobacterium sp. 4-46" FT /note="KEGG: nha:Nham_3422 cation diffusion facilitator FT family transporter " FT /note="COGs: COG1230 Co/Zn/Cd efflux system component FT category=P" FT /note="InterPro IPR002524" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSHDHHHHHGPGAAHGAGGHSHAPQDFGRAFAIGIALNMVFVVAEAAFGYFSNSMALIADAGHNLSDVAGLVVAWIAAGL FT SKRPPSARYTYGLRGSSILAALFNAVFLLLAVGAIGWEAVVRLFAPEPVAGITVMVVAGIGIVINAVTAWLFASGRHSDL FT NIRGAYLHMAADAAVSAAVVVAGVIILLTGWYWIDPAVSLIVAVVIVWGTWGLLRDSTALSLAAVPRDIDPTAVRAFLSK FT LPGVTQVHDLHIWGMSTTEVALTCHLVMPSGSPGDPFLVDLAHELQHDFGIAHTTVQIETDPNTVCALAPEHVV* FT " FT gene 237664..238608 FT /locus_tag="Rpal_0219" FT /colour=9 FT misc_feature order(237751..237819,237955..238023,238051..238119,238156..238224,238237..238305) FT /colour=11 FT /locus_tag="Rpal_0219" FT /note="5 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(238841..240352) FT /locus_tag="Rpal_0220" FT /product="AMP-dependent synthetase and ligase" FT /note="PFAM: AMP-dependent synthetase and ligase" FT /note="SPTR: Putative O-succinylbenzoate--CoA ligase - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0226 malonyl-CoA synthase " FT /note="COGs: COG0318 Acyl-CoA synthetase FT (AMP-forming)/AMP-acid ligase II category=I" FT /note="InterPro IPR000873" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MNANLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRGGGVY FT LPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAQADEAFATVERGADDLAAI FT LYTSGTTGRSKGAMLSHDNLASNSLTLVEFWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLM FT ARATVLMGVPTFYTRLLQSPRLTKEATGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPG FT AVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKD FT LVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGAAIDEAQVLHGLDGQLAKFKMPKKVIFVDD FT LPRNTMGKVQKNVLRETYKDIYK* " FT gene complement(238841..240352) FT /locus_tag="Rpal_0220" FT /colour=5 FT CDS 240629..241204 FT /locus_tag="Rpal_0221" FT /product="beta-Ig-H3/fasciclin" FT /note="PFAM: beta-Ig-H3/fasciclin" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0336 putative exported protein of FT unknown function with Fas1 domain " FT /note="COGs: COG2335 Secreted and surface protein FT containing fasciclin-like repeats category=M" FT /note="InterPro IPR000782" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTKRIALLTAAAFSALALAATVSVPASAESGKMMKSSGDTVMVGGAPMYPSKTIVENAAKSKDHTTLVAAVKAAGLVKTL FT DGKGPFTVFAPTNMAFDKLPAGTVDTLIKPENKAQLTKILTYHVVPGKLEAADLTDGKKLKTVEGETLTVKRMGDQVTLI FT DAKGGSSTVTIPNVNQSNGVIHVIDTVLMPS* " FT sig_peptide 240629..240715 FT /colour=11 FT /locus_tag="Rpal_0221" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.745 at FT residue 29" FT gene 240629..241204 FT /locus_tag="Rpal_0221" FT /colour=9 FT misc_feature 240641..240709 FT /colour=11 FT /locus_tag="Rpal_0221" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 241426..242064 FT /locus_tag="Rpal_0222" FT /product="conserved hypothetical protein" FT /note="SPTR: Bll0506 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0506 hypothetical protein " FT /note="COGs: COG4117 Thiosulfate reductase cytochrome B FT subunit (membrane anchoring protein) category=C" FT /note="InterPro IPR000516" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSTTTLTDPAPTTVPAESGAVLQPLWVRVMHWINAAAMLAMILSGWQIYNAAPLFDFQFSRALTLGGWLGGGLLWHFAAM FT WVLVINGLLYVILGFATGRFRNKLWPITLSGVASDLSQAIRLRLSHDDLSRYNAVQKVLYVGVLLVGLVSVASGLAIWKP FT VQFHSLTALLGGYDTARYVHFFAMSAIVGFSAIHIVLAALVPKALRAMIIGR* " FT gene 241426..242064 FT /locus_tag="Rpal_0222" FT /colour=13 FT misc_feature order(241519..241587,241645..241713,241840..241899,241957..242025) FT /colour=11 FT /locus_tag="Rpal_0222" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 242180..242959 FT /locus_tag="Rpal_0223" FT /product="oxidoreductase molybdopterin binding" FT /note="PFAM: oxidoreductase molybdopterin binding" FT /note="SPTR: Oxidoreductase, molybdopterin binding - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_3598 oxidoreductase, molybdopterin FT binding " FT /note="COGs: COG2041 Sulfite oxidase category=R" FT /note="InterPro IPR000572:IPR006311" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MLRINRLLIPGVDKKLLVRDAAKLMPDVSRRRFLAGGASLGALTLLTGCDVVDGASAETLLAKVSKFNDAVQAAIFNPNT FT LAPTFSEKDITRPFPFNAYYSLDEAPTIDGGDWKLEVSGLVQNKKSWTLQELTQLPEVSQITRHVCVEGWSAIGHWSGVR FT LRDFLDLIGADTKANYVWFRCADDYTSPIDMPTALHPQTQMTFKFGGDVLPRAYGYPMKIRIPTKLGFKNPKYVVSMEVT FT NDYKGGYWEDQGYNSFSGL* " FT gene 242180..242959 FT /locus_tag="Rpal_0223" FT /colour=11 FT CDS 243232..243750 FT /locus_tag="Rpal_0224" FT /product="superoxide dismutase copper/zinc binding" FT /note="PFAM: superoxide dismutase copper/zinc binding" FT /note="SPTR: Superoxide dismutase, copper/zinc binding FT precursor - Nitrobacter hamburgensis (strain X14 / DSM FT 10229)" FT /note="KEGG: nha:Nham_3597 superoxide dismutase, FT copper/zinc binding " FT /note="COGs: COG2032 Cu/Zn superoxide dismutase FT category=P" FT /note="InterPro IPR001424" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MILRALLCTGALLGVTTAAMAADSAKATLKNAEGTEIGTATLTEGSKGVTIKLALKGLPPGEHAFHIHAVGKCEPPFTSA FT GGHFNPENKKHGKMAEGGAHAGDMPNLDVPASGALSIDVVNDAVTLAKGKPNSVFKDGGTALVIHAKADDYKSDPAGNAG FT DRIACGVIEEAK* " FT sig_peptide 243232..243297 FT /colour=11 FT /locus_tag="Rpal_0224" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.999 at FT residue 22" FT gene 243232..243750 FT /locus_tag="Rpal_0224" FT /colour=9 FT CDS complement(243816..245003) FT /locus_tag="Rpal_0225" FT /product="protein of unknown function DUF1228" FT /note="PFAM: protein of unknown function DUF1228; major FT facilitator superfamily MFS_1" FT /note="SPTR: Blr0503 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0503 hypothetical protein " FT /note="COGs: COG2814 Arabinose efflux permease category=G" FT /note="InterPro IPR007114:IPR010645:IPR011701" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="LTLLDRTEAAPAHPARLILILSLAPTVGLGIGRFAYSLLLPDMRDSLGWSYSAAGFMNTINAAGYLVGALVTSRLVARFG FT MAAIVRVGTLACVASLALCALSGNFAVLSAARLIAGIGAALAFVAGGALATTIAQAQPARSAFLLSLFYAGPGIGILSSG FT LIAPFLLQAAGPGSWWLGWLVLAALSAAMTLPVLLAPIGVDGGLGGGRAAPFRIAPVLVYLAGYFMFGAGYIAYMTFMIA FT YVRDAGGGAAAQSAFWCLIGISAFVTPWVWRRVMALHRGGLSTTIILAVNAVGAVLPLFSLSPVMLATSALVFGVSFFAV FT VASTTAFVRFNYPQAGWPGAIAAMTIAFGIGQTLGPLVVGAITDAIGSLSSALAVSAATLALGAALSAFQRPLPK* FT " FT gene complement(243816..245003) FT /locus_tag="Rpal_0225" FT /colour=4 FT misc_feature complement(order(243840..243905,243921..243986,244008..244073,244104..244169,244191..244256,244287..244352,244413..244478,244509..244574,244614..244679,244710..244775,244791..244856,244887..244952)) FT /colour=11 FT /locus_tag="Rpal_0225" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 245224..246336 FT /locus_tag="Rpal_0226" FT /product="3-isopropylmalate dehydrogenase" FT /note="TIGRFAM: 3-isopropylmalate dehydrogenase" FT /note="PFAM: isocitrate/isopropylmalate dehydrogenase" FT /note="SPTR: 3-isopropylmalate dehydrogenase - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_3595 3-isopropylmalate dehydrogenase FT " FT /note="COGs: COG0473 Isocitrate/isopropylmalate FT dehydrogenase category=E" FT /note="InterPro IPR001804:IPR004429" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MATHKLLLLPGDGIGTEVMAEVSRLIDWLNKAGIASFETEHGLVGGAAYDADKVAITDATMALAQASDAVIFGAVGGPKW FT DGVPYDARPEAGLLRLRKDLGLFANLRPAVCYPALADSSSLKRDVVEGLDIMIVRELTGGVYFGEPKTITDLGNGQKRAV FT DTQVYDTYEIERIGRVAFDLARKRRNKVTSMEKRNVMKTGVLWNEVITAVHDREYKDVQLDHQLADSGGMNLVKWPKQFD FT VIVTDNLFGDMLSDIAAMLTGSLGMLPSASLGEVDAKTGKRKSMYEPVHGSAPDIAGKGMANPVAMLASFGMALRYSLDM FT GALADKLDEAIAAVLAKGLRTADIKSEGTTVISTSQMGEAIVTELQALHA* " FT gene 245224..246336 FT /locus_tag="Rpal_0226" FT /colour=10 FT CDS complement(246494..246895) FT /locus_tag="Rpal_0227" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein precursor - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_3594 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRLPMGTPMFVKSTAARLLPVLLAAAAVAVIGVSNADAAPKKKRVYGTSDQIRYGSRGPNVVYQAGPRTRVYVTKRSWLD FT AGTEVQPGERHFSDYAFPPGYSFARENGQRPLDRWPLNPASDLGGSPTGFPLY* " FT gene complement(246494..246895) FT /locus_tag="Rpal_0227" FT /colour=13 FT sig_peptide complement(246785..246895) FT /colour=11 FT /locus_tag="Rpal_0227" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.610 at FT residue 37" FT misc_feature complement(246794..246850) FT /colour=11 FT /locus_tag="Rpal_0227" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(247039..247848) FT /locus_tag="Rpal_0228" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0343 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRSSPALRAAASRHRIYPALQSFAEECRDTLLRTMAYVGALALIGLIVFYTANPLTDAAITAATTAEAGPGWSVATRSQP FT AYALNQLDWPGKTETTEILRHPDGGRKDILRLAAPGEPVAAEIEIYRIGRETSRVAAEAALAARMDPAGTATIETAGVID FT TKFGPVPLFSLTGSDRPAGSCLGFVKAIDAASLRISGFSCRGDSGPQRRTAVACLLDRLVLLSGDAATAAAFAQAELRRG FT SCAPNQSAASAASADWITGLQDPLLRGRL* " FT gene complement(247039..247848) FT /locus_tag="Rpal_0228" FT /colour=13 FT misc_feature complement(247693..247758) FT /colour=11 FT /locus_tag="Rpal_0228" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 247963..248997 FT /locus_tag="Rpal_0229" FT /product="aspartate-semialdehyde dehydrogenase" FT /EC_number="1.2.1.11" FT /note="TIGRFAM: aspartate-semialdehyde dehydrogenase" FT /note="PRIAM: Aspartate-semialdehyde dehydrogenase" FT /note="PFAM: Semialdehyde dehydrogenase NAD - binding; FT Semialdehyde dehydrogenase dimerisation region" FT /note="SPTR: Aspartate-semialdehyde dehydrogenase - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0501 aspartate-semialdehyde FT dehydrogenase " FT /note="COGs: COG0136 Aspartate-semialdehyde dehydrogenase FT category=E" FT /note="InterPro IPR000534:IPR005986:IPR012280" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MGYKVAVVGATGNVGREMLAILDERKFPADEVVALASRRSVGVEVSYGDKTLKCKALEHYDFSDVDICLMSAGGEVSKEW FT SPKIGAQGAVVIDNSSAWRMDPDVPLIVPEVNAAAAAGFTKKNIIANPNCSTAQLVVALKPLHDHAKIKRVVVSTYQSVS FT GAGKDAMDELFSQTKAVYTNSELVNKKFPKRIAFNLIPQIDVFMEDGFTKEEWKMVVETKKILDPKIKLTATCVRVPVFV FT SHSESVNIEFENPISADEAREILRKAPGCLVIDKHEPGGYVTPYEAAGEDATYISRIRTDPTVDNGLVLWCVSDNLRKGA FT ALNAIQIAEVLINRKLITAKKQAA* " FT gene 247963..248997 FT /locus_tag="Rpal_0229" FT /colour=10 FT CDS 249133..249687 FT /locus_tag="Rpal_0230" FT /product="conserved hypothetical protein" FT /note="PFAM: conserved hypothetical protein" FT /note="SPTR: Putative membrane protein - Bradyrhizobium FT sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0359 hypothetical protein " FT /note="COGs: COG2862 membrane protein category=S" FT /note="InterPro IPR005134" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTDQPDPTPSPSSAKHVERGFETLLFNSRWLMAPFYFGLVISLVVLLYKFVMLLYEFIVHATLAKESDIILGVLSLIDVS FT LTGNLVLIVVFSGYENFVSRIDPGNHPDWPEWMTKVDFAGLKQKLLASIVAISAIQVLKAFMNIDSYDQTKLAWLVGIHL FT VFVVSTLIMALSDRWGHSDDKGGH* " FT gene 249133..249687 FT /locus_tag="Rpal_0230" FT /colour=13 FT misc_feature order(249241..249309,249337..249405,249586..249645) FT /colour=11 FT /locus_tag="Rpal_0230" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(249839..250483) FT /locus_tag="Rpal_0231" FT /product="Carbonate dehydratase" FT /EC_number="4.2.1.1" FT /note="PRIAM: Carbonate dehydratase" FT /note="PFAM: carbonic anhydrase" FT /note="SPTR: Putative carbonic anhydrase 2 - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0346 putative carbonic anhydrase 2 " FT /note="COGs: COG0288 Carbonic anhydrase category=P" FT /note="InterPro IPR001765:IPR015892" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTSFPKSLIDGYEAFRTQRLPTEQSRFRELSERGQSPEVMVIGCCDSRVSPEVIFDAGPGEMFVVRNVANLVPVYEPDGG FT AHGVSAALEFAVQVLRVKHIVVLGHALCGGIKAFTDKTPPLTESDFIGRWMQMFTKPGEVVEKRDHETVQDFRTRIEKAA FT VFRSIENLMTFPCVKILVERGKLQLHGAYFGVADGDLFVLDQENKQFVPAAKVV* " FT gene complement(249839..250483) FT /locus_tag="Rpal_0231" FT /colour=9 FT CDS 250664..251542 FT /locus_tag="Rpal_0232" FT /product="Citryl-CoA lyase" FT /EC_number="4.1.3.34" FT /note="PRIAM: Citryl-CoA lyase" FT /note="PFAM: HpcH/HpaI aldolase" FT /note="SPTR: Putative citrate lyase beta chain - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0347 putative citrate lyase beta FT chain " FT /note="COGs: COG2301 Citrate lyase beta subunit FT category=G" FT /note="InterPro IPR005000" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MIRPRRSLLFMPGSNARALEKARLLPVDGLILDLEDAVAPDAKDTARDQIAAAVAAKGYGKREVLVRINALDTAWWQDDI FT AMAAKAGPDGILVPKVSSIEDIATVGNKLAELGADPSIRVWIMIETARGVLHAEELAAQKHEAKSRLEGFVFGPNDISRE FT TGIRMLPGRSTMLSMITHCVLAARVHGLIALDGPYSDIGNVDGLSEECAQARDLGFDGKTLIHPGQIDACNAAFTPPPED FT VAQARKILAAFERPENQGRGAIQLDGRMVERLHAEIAKKTIAIADAIETAGH* " FT sig_peptide 250664..250720 FT /colour=11 FT /locus_tag="Rpal_0232" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.658) with cleavage site probability 0.649 at FT residue 19" FT gene 250664..251542 FT /locus_tag="Rpal_0232" FT /colour=4 FT CDS complement(251718..253409) FT /locus_tag="Rpal_0233" FT /product="methyl-accepting chemotaxis sensory transducer" FT /note="PFAM: histidine kinase HAMP region domain protein; FT chemotaxis sensory transducer" FT /note="SPTR: Methyl-accepting chemotaxis protein - FT Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)" FT /note="KEGG: mag:amb3991 methyl-accepting chemotaxis FT protein " FT /note="COGs: COG0840 Methyl-accepting chemotaxis protein FT category=N" FT /note="InterPro IPR000727:IPR003660:IPR004089:IPR004090" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MKIRLSITSMIVAFAVVVLVSLTAMLTTNIMALNQLRVGGPLYSQIKLGNDLVADILPPPAYVIEAYLEATLALRRPTEW FT RAHAAKLEQLHRDYLDRQKYWSGSELDPVLKTRLTVDSDAAVQKFWRAAEQELIPALSAGDEAAAEAAYTKLDASYAAHR FT AIIDDIVKRANAENAELETEAARQVGSYSTIVWILSGFAALLIALGVAGLAVGMVRPLVRLTAAMQAMAAGMLDVVIPGA FT GRSDEIGGMAKAITAIKTNAEHKANQEAAEKSRQEHLAAEQRKADMARLADGFEDAVGEIIKTVSSAANELEAAAHSLSS FT TAARSLELAVGVASSSQEASAGVQSVASASEELTASVHEIGRQVQTSANVANEAADQARQTNERVSELSAAAARIGDVVE FT LISNIAGQTNLLALNATIEAARAGEAGRGFAVVASEVKALAEQTGKATGEIGQQITGIQAATGESVAAIKEICSIIGQMS FT EISSSIASAVEEQGMATKDIAVNIQHAAHGTSQVDEDIARVQAGARETGAASVQVLSAAKSLSSESSRLRAEVGNFLASV FT RAA* " FT gene complement(251718..253409) FT /locus_tag="Rpal_0233" FT /colour=9 FT misc_feature complement(order(252771..252836,253329..253394)) FT /colour=11 FT /locus_tag="Rpal_0233" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(253311..253409) FT /colour=11 FT /locus_tag="Rpal_0233" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.480 at FT residue 33" FT CDS complement(254159..254764) FT /locus_tag="Rpal_0234" FT /product="3-isopropylmalate dehydratase, small subunit" FT /EC_number="4.2.1.33" FT /note="TIGRFAM: 3-isopropylmalate dehydratase, small FT subunit" FT /note="PRIAM: 3-isopropylmalate dehydratase" FT /note="PFAM: aconitate hydratase domain protein" FT /note="SPTR: 3-isopropylmalate dehydratase small subunit - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0365 isopropylmalate isomerase small FT subunit " FT /note="COGs: COG0066 3-isopropylmalate dehydratase small FT subunit category=E" FT /note="InterPro IPR000573:IPR004431" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MDKFTTLEGVAAPLKIINVDTDMIIPKQYLKTIKRTGLGKGLFSEQRYKDDGSENPDFILNKPAYRGAKILVAGDNFGCG FT SSREHAPWALLDFGIRCVISTSFGDIFYNNCFKNGVLPIRVSQADLDKLFDDAERGSNATMTIDLQAQEIRGPDGGAIKF FT EIDPFRKHCLINGLDDIGLTLEKKPSIDAYETKLKTERAWA* " FT gene complement(254159..254764) FT /locus_tag="Rpal_0234" FT /colour=10 FT CDS complement(254850..255263) FT /locus_tag="Rpal_0235" FT /product="protein of unknown function DUF1025" FT /note="PFAM: protein of unknown function DUF1025" FT /note="SPTR: Blr0494 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0494 hypothetical protein " FT /note="COGs: COG3824 conserved hypothetical protein FT category=S" FT /note="InterPro IPR006025:IPR010428" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MWINAKAPSLADLEQMAHEMFARLPGEFRSLCEDVIIRVDDFATEEVLDELGAETEFDVLGLFQGIGLPQRSSQDVAPMP FT NMIWLYRRPILDYWAEHDDSLGEIVRHVLVHEIGHHFGLSDDDMEAIEAKADELAED* FT " FT gene complement(254850..255263) FT /locus_tag="Rpal_0235" FT /colour=13 FT CDS 255369..255716 FT /locus_tag="Rpal_0236" FT /product="putative exported protein of unknown function" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0353 putative exported protein of FT unknown function " FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MDQLGKGRITITAAALGLGLAFGLPATTSAQAQQTAAANADRAAADRLTDVSSQDRVRRAPRRVPVYPRDEGDDVIPRYN FT PGPNAVRDCTASYVQEYRPSGTVIVPRMNCFWRRG* " FT sig_peptide 255369..255467 FT /colour=11 FT /locus_tag="Rpal_0236" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.944 at FT residue 33" FT gene 255369..255716 FT /locus_tag="Rpal_0236" FT /colour=11 FT CDS 255948..256229 FT /locus_tag="Rpal_0237" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein precursor - FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_2788 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKILKLSGLAAIAGLLLIAAPGERAQAAPLSTPGIAASVQRDAIPQTTEVQYRHHRHMHRHHHRSHRHHHVRRHYGHRHHHHHYRHHHHRHWR*" FT sig_peptide 255948..256031 FT /colour=11 FT /locus_tag="Rpal_0237" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.833 at FT residue 28" FT gene 255948..256229 FT /locus_tag="Rpal_0237" FT /colour=13 FT CDS 256340..256651 FT /locus_tag="Rpal_0238" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein precursor - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_3587 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRTWIGAAILATALGAAGPAGATPATAAKATGVSGAQATDISARQRKPHAKHRHVRRHSAPHRTYVYGPRGSYDYNARPH FT WYRPDPVSPFFPFSYGWGLGPSW* " FT sig_peptide 256340..256423 FT /colour=11 FT /locus_tag="Rpal_0238" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.557 at FT residue 28" FT gene 256340..256651 FT /locus_tag="Rpal_0238" FT /colour=13 FT CDS 256772..257443 FT /locus_tag="Rpal_0239" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0372 conserved hypothetical protein FT (partial) " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MADLRVIRMPAAQSSRPSPGPLRLVRRIGVALMAATALTISAITPRPALALSPVTPATKSISSAAATQPIQVQHHFGHGG FT GPRVGGFHGGGFRGGPAFHGGFRGGPAVGPRFYGGGRHFYAGPRVYGAPRFYGRPRYFGARHYGFHRRYYRPRVYGYYGP FT AYYGSAYYYPAYYGYYRPRVCRVVWTYYGPRRVCHVRHWRHHWHRHWRHHHRHHHHHRHWRVY* FT " FT sig_peptide 256772..256924 FT /colour=11 FT /locus_tag="Rpal_0239" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.801) with cleavage site probability 0.798 at FT residue 51" FT gene 256772..257443 FT /locus_tag="Rpal_0239" FT /colour=13 FT misc_feature 257231..257299 FT /colour=11 FT /locus_tag="Rpal_0239" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(257510..258919) FT /locus_tag="Rpal_0240" FT /product="3-isopropylmalate dehydratase, large subunit" FT /EC_number="4.2.1.33" FT /note="TIGRFAM: 3-isopropylmalate dehydratase, large FT subunit" FT /note="PRIAM: 3-isopropylmalate dehydratase" FT /note="PFAM: aconitate hydratase domain protein" FT /note="SPTR: 3-isopropylmalate dehydratase, large subunit FT region - Nitrobacter sp. Nb-311A" FT /note="KEGG: nha:Nham_3584 isopropylmalate isomerase large FT subunit " FT /note="COGs: COG0065 3-isopropylmalate dehydratase large FT subunit category=E" FT /note="InterPro IPR001030:IPR004430" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSAKPTTLYDKIWNDHLVHEAEDGTCLLYIDRHLVHEVTSPQAFEGLRTAGRKVHAPEKTLAVVDHNVPTTDRSKPNPDP FT ESAEQIAALAENARDFGITYYNEFDKRQGVVHVIGPEQGFTLPGTTIVCGDSHTSTHGAFGALAHGIGTSEVEHVLATQT FT LIQKKAKNMRVTVDGQLPDGVTAKDVILAIIGEIGTAGGTGYVLEYAGDAIRSLSMEGRMTVCNMSIEGGARAGLIAPDA FT KAYEFLKGRPLAPKGEAWDAALRYWETLRSDDGAHFDHELKLDAAALPPIVTWGTSPEDVISVTGRVPNPADIADEAKRL FT SKERALAYMGLTPGTKITDIKIDRMFIGSCTNGRIEDLRAAAKVAEGKTVNANVNAIIVPGSGLVKEQAEAEGLDKIFIK FT AGFEWREPGCSMCLAMNPDKLAPEERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAIAGHFVDIRDWH* FT " FT gene complement(257510..258919) FT /locus_tag="Rpal_0240" FT /colour=10 FT CDS complement(258996..259109) FT /locus_tag="Rpal_0241" FT /product="conserved hypothetical protein" FT /note="KEGG: nha:Nham_3583 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MDGMFPNRRRASKIVLDDRSRLPWRFFGRLTTAALIS*" FT gene complement(258996..259109) FT /locus_tag="Rpal_0241" FT /colour=13 FT CDS complement(259229..259618) FT /locus_tag="Rpal_0242" FT /product="ribosomal protein L19" FT /note="PFAM: ribosomal protein L19" FT /note="SPTR: Q1QHI6 50S ribosomal protein L19. Nitrobacter FT hamburgensis (strain X14 / DSM 10229)." FT /note="KEGG: nha:Nham_3582 50S ribosomal protein L19 " FT /note="COGs: COG0335 Ribosomal protein L19 category=J" FT /note="InterPro IPR001857" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MNLIQTLEKEQFDKLSAGKTIPEFGPGDTVIVNVKVVEGERSRVQAYEGVCIGRSGGGINESFTVRKISYGEGVERVFPL FT LSPMIDSIKVVRRGKVRRAKLYYLRNLRGKSARIVEKKQDRTAAVAAAE* " FT gene complement(259229..259618) FT /locus_tag="Rpal_0242" FT /colour=7 FT CDS complement(259732..260478) FT /locus_tag="Rpal_0243" FT /product="tRNA (guanine-N1)-methyltransferase" FT /EC_number="2.1.1.31" FT /note="TIGRFAM: tRNA (guanine-N1)-methyltransferase" FT /note="PRIAM: tRNA (guanine-N(1)-)-methyltransferase" FT /note="PFAM: tRNA (guanine-N1-)-methyltransferase" FT /note="SPTR: TRNA - Nitrobacter sp. Nb-311A" FT /note="KEGG: bja:blr0486 tRNA FT (guanine-N1)-methyltransferase " FT /note="COGs: COG0336 tRNA-(guanine-N1)-methyltransferase FT category=J" FT /note="InterPro IPR002649:IPR016009" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTWRATVLTLFPEMFPGPLGVSLAGRALASGLWGLEARDIRDSATDRHRSVDDTPAGGGPGMVLRADVLAAAIDAVDAAA FT DRPRLVMSPRGRPLTQARVAELAAGPGPLIVCGRFEGIDQRVIDARGLEEVSIGDYVLSGGEIAAMALIDACVRLLPGVM FT GKLESSTDESFSAGLLEYPQYTRPQTFEGRAIPEVLLSGDHGKVAAWRLGEAEALTKARRPDLWAARPAQTIRAKGESQK FT TPKNKTDG* " FT gene complement(259732..260478) FT /locus_tag="Rpal_0243" FT /colour=7 FT CDS complement(260621..261151) FT /locus_tag="Rpal_0244" FT /product="16S rRNA processing protein RimM" FT /note="TIGRFAM: 16S rRNA processing protein RimM" FT /note="PFAM: RimM protein; PRC-barrel domain protein" FT /note="SPTR: Q89X39 Probable 16S rRNA-processing protein FT rimM. Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0483 16S rRNA processing protein " FT /note="COGs: COG0806 RimM protein required for 16S rRNA FT processing category=J" FT /note="InterPro IPR002676:IPR007903:IPR011961" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MPSGLICVARIGAPHGVRGAVRLWSFTADPFAVSDYGPLVTKDGARQFEIASAREAKSHLVVTLKGVATRDEAERLNGVE FT LYVARDKLPPTEADEYYHADLIGLAAVTTAGDALGKVVAIHNFGAGDIIEIAPPSGPTLLLPFTNAVVPTVDLAAGQVVI FT ELPNEIEGDTPNHPEA* " FT gene complement(260621..261151) FT /locus_tag="Rpal_0244" FT /colour=7 FT CDS complement(261164..261484) FT /locus_tag="Rpal_0245" FT /product="ribosomal protein S16" FT /note="PFAM: ribosomal protein S16" FT /note="SPTR: A4YKA0 30S ribosomal protein S16. FT Bradyrhizobium sp. (strain ORS278)." FT /note="KEGG: bra:BRADO0378 30S ribosomal protein S16 " FT /note="COGs: COG0228 Ribosomal protein S16 category=J" FT /note="InterPro IPR000307" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFLDTA FT GVRKREARNNPEKAVPRKERKAADGK* " FT gene complement(261164..261484) FT /locus_tag="Rpal_0245" FT /colour=7 FT CDS complement(261654..263204) FT /locus_tag="Rpal_0246" FT /product="signal recognition particle protein" FT /note="TIGRFAM: signal recognition particle protein" FT /note="PFAM: GTP-binding signal recognition particle SRP54 FT G- domain; Signal peptide binding (SRP54) M- domain FT protein; GTP-binding signal recognition particle SRP54 FT helical bundle" FT /note="SMART: AAA ATPase" FT /note="SPTR: Signal recognition particle subunit FFH/SRP54 FT - Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0368 signal recognition particle FT with 4.5 RNA, ffh family " FT /note="COGs: COG0541 Signal recognition particle GTPase FT category=U" FT /note="InterPro FT IPR000897:IPR003593:IPR004125:IPR004780:IPR013822" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MFDNLSDKLGGILDRLTGRGALSEADVDAAMREIRRALLEADVALEVVRSFTERVREQAVGATVVKSVKPGQMVVKIVND FT ELIATLGSEVQSIDLNAVPPVPIMMVGLQGSGKTTTTAKLARRMTERDKRKVLMASLDVYRPAAMEQLAVLGRDLQIDTL FT PIVAGQQPPDIARRAMEAGKLGGYDVVLLDTAGRTTLDEDMMAEAAEIKAAANPHEVLLVADSLTGQDAVNLARAFDQRV FT GLTGIVLTRIDGDGRGGAALSMRAVTGKPIKLMGTGEKTDALEDFHPSRIASRILGMGDIVSLVEKAAATLDAEKAAAVA FT EKMRKGKFDLTDLRDQLLQMTKMGGIGGLMGLMPGISKMKNQIAASGIDDKVLKRQVAIIDSMTREERKNPDILKASRKK FT RIAAGAGIKVEDVNKLLKMHRNMADMMKAVGRGKGGPMAGFAKAMGFGGGLPSPDEIKAMQEKMKSGDMPEGLPELPKDL FT PASLRGGMPNLPGLTGLAGKPTLPGLGGFPGFGKKK* " FT gene complement(261654..263204) FT /locus_tag="Rpal_0246" FT /colour=9 FT CDS 263657..263926 FT /locus_tag="Rpal_0247" FT /product="prevent-host-death family protein" FT /note="KEGG: sus:Acid_1771 prevent-host-death family FT protein " FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MKFVKLADARAAIEQLLDEVERGETIIITRGVLPRRKAGAPQEQWRTAMQDLRDLKKGAGLASIEDLLQWREEQRKAARGQRTAPARWI*" FT gene 263657..263926 FT /locus_tag="Rpal_0247" FT /colour=11 FT CDS 264152..265213 FT /locus_tag="Rpal_0248" FT /product="beta-lactamase domain protein" FT /note="PFAM: beta-lactamase domain protein" FT /note="SPTR: Putative metallo-hydrolase/oxidoreductase - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0380 putative FT metallo-hydrolase/oxidoreductase " FT /note="COGs: COG2220 Zn-dependent hydrolase of the FT beta-lactamase fold category=R" FT /note="InterPro IPR001279:IPR006311" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSLITRRRLLATAAGLAATAGLSSLWISRMSYYQGPVTDHFDGTRFFDPDGAPPKSFWEVMRWRFSHKPAQWPEWAPSPF FT ADTPPPRVDGAGIRLVYVGHASWLIQTAGLNVLIDPVWSKRVSPVSFAGPKRHNDPGVAFDRLPKIDVVLVSHGHYDHLD FT LATLSRLAATHRPRVITPLGNDLTMTAHDDSIRAEAYDWSDRVELNDRVAVTLVPTRHWTARGLFDRNRALWASFVLETP FT AGRIYVVCDSGYGDGRHFRRVRDAHAPLKLAILPIGAYEPRWFMQDQHMNPADAVKALADCGAERALANHHGTFQLTDEA FT IDAPEQALYAALDADGVPRERFPVLKPGQVFEL* " FT sig_peptide 264152..264229 FT /colour=11 FT /locus_tag="Rpal_0248" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.996) with cleavage site probability 0.226 at FT residue 26" FT gene 264152..265213 FT /locus_tag="Rpal_0248" FT /colour=11 FT CDS complement(265223..265921) FT /locus_tag="Rpal_0249" FT /product="protein of unknown function DUF541" FT /note="PFAM: protein of unknown function DUF541" FT /note="SPTR: Putative uncharacterized protein precursor - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_3577 protein of unknown function FT DUF541 " FT /note="COGs: COG2968 conserved hypothetical protein FT category=S" FT /note="InterPro IPR007497" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MNMLRSLSIAAAACCLFVALPARAQDVPPPGIVVRGEAQKSVAPDTAVIEAGVSNFAKSARGAAEATNLAIGKVLLELKN FT AGIDGKDIQTSQLSLQPQYADRPGPSEVTGYVAKNIVSVRVRDIAAVAGILDRLMVAGANEVRGISFTVSNASKLLDEAR FT TEAVADARRKAEIYARAAGLTLAAPVSIAEDSGPGVMPMRKMAADLSAGAQVAPGEQSLNVSVTVNWGVKAQ* FT " FT gene complement(265223..265921) FT /locus_tag="Rpal_0249" FT /colour=13 FT sig_peptide complement(265847..265921) FT /colour=11 FT /locus_tag="Rpal_0249" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 1.000 at FT residue 25" FT CDS complement(265918..266700) FT /locus_tag="Rpal_0250" FT /product="transcription activator effector binding" FT /note="PFAM: transcription activator effector binding" FT /note="SPTR: Blr0478 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0478 hypothetical protein " FT /note="InterPro IPR010499" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MERPCLFGLMRVGLMPALVLTLGIVGASAQTAPYASKDAKDKPPAAAPEQAQTPAAPATSATPAAPAPATPPAASEAPAA FT TPVPTTPSAPSATQTPAAPSAPAPVQTADPFGEESTLEPKTVVILKGKANWDNAFDSLMDAFKSLTALLDKQGIAPNGNP FT MIVYTSTDDAGFTFQAQIPVPQEPKNLGKSMSIGKSPDGKALKFVHRGSYDNMDNTYEAITNFLDDKKLEAKDTFIEEYM FT TDPLKTAEDKLVINVYVPMK* " FT gene complement(265918..266700) FT /locus_tag="Rpal_0250" FT /colour=13 FT sig_peptide complement(266611..266700) FT /colour=11 FT /locus_tag="Rpal_0250" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.988) with cleavage site probability 0.903 at FT residue 30" FT misc_feature complement(266614..266679) FT /colour=11 FT /locus_tag="Rpal_0250" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 266937..267818 FT /locus_tag="Rpal_0251" FT /product="Diaminopimelate epimerase" FT /EC_number="5.1.1.7" FT /note="PRIAM: Diaminopimelate epimerase" FT /note="PFAM: diaminopimelate epimerase" FT /note="SPTR: Diaminopimelate epimerase - Nitrobacter FT winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_2776 diaminopimelate epimerase " FT /note="COGs: COG0253 Diaminopimelate epimerase category=E" FT /note="InterPro IPR001653" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSALDNRLFAKMNGIGNEIVVVDLRDQPAPVTPADARAVAAHVPYDQLMLLQPARLPGTEAFVRIYNNDGSESGACGNGM FT RCVARQMFAGSDKNGLTFETRAGLLNCWRGPADGLYTVDMGEPKFGWQDIPLAEEFRDTRMIELQIGPIDAPVLHTPSVV FT SMGNPHAIFWVDDVNAYDLGRFGPLLENHPIFPERANITLAHIVDRQHITMRTWERGAGLTKACGSAACATAVAAARLKR FT TDRTVEMTLPGGQLTIEWRDNDNHVLMTGGAEFEFEGRFDPALFAGALDPTGA* " FT gene 266937..267818 FT /locus_tag="Rpal_0251" FT /colour=10 FT CDS 267818..269089 FT /locus_tag="Rpal_0252" FT /product="MiaB-like tRNA modifying enzyme" FT /note="TIGRFAM: RNA modification enzyme, MiaB family; FT MiaB-like tRNA modifying enzyme" FT /note="PFAM: Radical SAM domain protein; Protein of FT unknown function UPF0004 " FT /note="SMART: Elongator protein 3/MiaB/NifB" FT /note="SPTR: Putative MiaB-like tRNA modifying enzyme - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0384 putative MiaB-like tRNA FT modifying enzyme " FT /note="COGs: COG0621 2-methylthioadenine synthetase FT category=J" FT /note="InterPro FT IPR005839:IPR006467:IPR006638:IPR007197:IPR013848" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MAVEVVTFGCRLNAFESELIRREAESAGLADAIVVNSCAVTNEAVAQARQQIRKLKRARPEARIIVTGCAAQTEPATFAA FT MAEVDRVIGNDDKTRSDAWHAAKGALEAGASFGLDTEQKIAVADIMAVREMAPHLLDGYQSGLPRVFVQVQNGCDHRCTF FT CIIPYGRGNSRSVPVGAVVEQVRLLAERGHAEIVLTGVDLTSYGADLPGAPKLGTLVKKVLRHVPELQRLRISSIDQVEA FT DRDLIDALATEPRLMPHLHLSLQAGDDLILKRMKRRHARADAIAFCAEVRRRRPDIALGADLIAGFPTETEEMFQRSLDL FT VEECGLTFLHVFPYSPRPGTPAARMPQLDGRVIRDRAARLRAAGEAALQRRLDAEIGATRAVLIESPTQGRTEHFLPVAI FT SGATPGDVQTLRIIRHDGARLTV* " FT gene 267818..269089 FT /locus_tag="Rpal_0252" FT /colour=7 FT CDS complement(269099..269761) FT /locus_tag="Rpal_0253" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Xanthobacter sp. (strain Py2)" FT /note="KEGG: xau:Xaut_1107 hypothetical protein " FT /note="COGs: COG3897 methyltransferase category=R" FT /note="InterPro IPR001692" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSTSTITDPIAFIHANTRLREVPLVPEVMLHVADEALPLWSKTEEELGEAGLPPPFWAFAWAGGQALARYVLDHPQDVAG FT KEVIDLASGSGLVAIAAMKAGARSVTAFDIDGFAREAILVNAAANGVAIDVCGDDLLAGPHPLPAQAVLAGDIFYQQDIA FT GLAFAFLQNRVAQGARVLIGDPGRYYLPKDQLVQLASYGVPVTRELEDSEIKHTGVWMLK* FT " FT gene complement(269099..269761) FT /locus_tag="Rpal_0253" FT /colour=13 FT CDS complement(269947..270360) FT /locus_tag="Rpal_0254" FT /product="protein of unknown function DUF55" FT /note="PFAM: protein of unknown function DUF55" FT /note="SPTR: Blr0569 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0569 hypothetical protein " FT /note="COGs: COG2947 conserved hypothetical protein FT category=S" FT /note="InterPro IPR002740" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VAYWLVKSEPSVWSWDQQVAKGAAGEAWTGVRNHSAKLHMVAMRRGDRAFFYHSNEGKEIVGIAEIIREAYPDPTDASGK FT FVCVDIKADKPLKSPVTLAAVKAEPRLAEMALMKYSRLSVQPVTAEEWKLVCKMGGL* FT " FT gene complement(269947..270360) FT /locus_tag="Rpal_0254" FT /colour=13 FT CDS complement(270363..271352) FT /locus_tag="Rpal_0255" FT /product="Glycerol-3-phosphate dehydrogenase (NAD(P)(+))" FT /EC_number="1.1.1.94" FT /note="PRIAM: Glycerol-3-phosphate dehydrogenase FT (NAD(P)(+))" FT /note="PFAM: NADP oxidoreductase coenzyme F420-dependent; FT NAD-dependent glycerol-3-phosphate dehydrogenase domain FT protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; FT Ketopantoate reductase ApbA/PanE domain protein" FT /note="SPTR: A5E8T9 Glycerol-3-phosphate dehydrogenase FT [NAD(P)+] (EC 1.1.1.94) (NAD(P)H- dependent FT glycerol-3-phosphate dehydrogenase). Bradyrhizobium sp. FT (strain BTAi1 / ATCC BAA-1182)." FT /note="KEGG: bbt:BBta_0290 NAD(P)H-dependent FT glycerol-3-phosphate dehydrogenase " FT /note="COGs: COG0240 Glycerol-3-phosphate dehydrogenase FT category=C" FT /note="InterPro FT IPR004455:IPR006109:IPR006168:IPR006176:IPR011128:IPR013332" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MGSLNSIAVLGGGAWGTALAQTAARAGRKVTLWEHDAGNAEHLIAARESRFLPGVRLEPSIQVTRDLAEAARADALLLVV FT PAQVLRQVVTSLQPLIAPRTPLVACAKGIEHGTHRFMTEIIAEAAPAAIPAILSGPSFAADVARGLPTAVTIAATDAACA FT QALAQAMNSGSFRPYHSTDVRGVELGGATKNVLAIAAGIVEGRQLGASALAAMTTRGFVELVRFGKAYGARIETMHGLSG FT LGDLTMCCSTPQSRNFSFGMALGRGEGIESAAHGKLAEGYYTAPVLLEMAQAKGIDMPISTAVAAVLGGKLSVDAAIEGL FT LTRPLKAEE* " FT gene complement(270363..271352) FT /locus_tag="Rpal_0255" FT /colour=3 FT sig_peptide complement(271290..271352) FT /colour=11 FT /locus_tag="Rpal_0255" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.988) with cleavage site probability 0.949 at FT residue 21" FT CDS complement(271388..272479) FT /locus_tag="Rpal_0256" FT /product="metalloendopeptidase, glycoprotease family" FT /EC_number="3.4.24.57" FT /note="TIGRFAM: metalloendopeptidase, glycoprotease FT family" FT /note="PRIAM: O-sialoglycoprotein endopeptidase" FT /note="PFAM: peptidase M22 glycoprotease" FT /note="SPTR: Peptidase M22, glycoprotease - Nitrobacter FT sp. Nb-311A" FT /note="KEGG: nha:Nham_0561 O-sialoglycoprotein FT endopeptidase " FT /note="COGs: COG0533 Metal-dependent protease with FT possible chaperone activity category=O" FT /note="InterPro IPR000905" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="LTSEQALLVLGIETTCDETAAAVVERRADGSGRLLSNIVRSQTDEHAPFGGVVPEIAARAHVDVLDGIIAAAMNEAGVAF FT ASLSGVAAAAGPGLIGGVIVGLTTAKAIALVHGTPLIAVNHLEAHALTPRLTDAVEFPYCLFLASGGHTQIVAVLGVGNY FT VRLGTTVDDAIGEAFDKIAKMLGLPYPGGPQVERAAEAGDPNRFAFPRPMLGRQDANFSLSGLKTAVRNEAGKLTPLDPQ FT DINDLCAGFQAAVLESVADRLGAGLRLFKERFGPPKALVAAGGAAANQAIRRMLREVAAKVQTTLIVPPPSLCTDNGAMI FT AWAGAERLALGLTDTMDTAPRARWLLDANATAPAKFANTRAGF* " FT gene complement(271388..272479) FT /locus_tag="Rpal_0256" FT /colour=9 FT CDS 272704..273450 FT /locus_tag="Rpal_0257" FT /product="Uroporphyrinogen III synthase HEM4" FT /note="PFAM: Uroporphyrinogen III synthase HEM4" FT /note="SPTR: Bll0566 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0566 uroporphyrinogen III synthase " FT /note="COGs: COG1587 Uroporphyrinogen-III synthase FT category=H" FT /note="InterPro IPR003754" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="VALLVTRPQPDGDATAKALRAKGYDVLLAPMLRFEPVPFPDDPDAHYTGVIVTSANALRALDDQPVLARLLKLPLFAVGK FT HTARKAQDAGFSDVIVADGDAAKLRIKIGDSLRGTDKRAGALLYLAGADLSRDLAGELREDGFDVVMQTAYRMVPLPSLP FT EDVCDAFAANRIEAVLHYSRRSARAFIDATRTSGIEISALAIPQCCLSEAVSEVVREAGANQVMVARKPDEKALLEALDR FT ALGPAKVN* " FT gene 272704..273450 FT /locus_tag="Rpal_0257" FT /colour=12 FT CDS 273502..274911 FT /locus_tag="Rpal_0258" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0564 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MVENRPEHEQAAEPAEHHQPTGEETSTAAPGAEAEAAAEIAPEAEPAQGPEQAFDIAADQREQAEQAAGLPEPEFATTTA FT AADASATAQSSAAPRNSIASLVLPPVLTIAIATGLVVGAAKMGLLPQFLSSTSVTAPQADPAAFDALNARIAKLEAAPTA FT GGATAVPSDSAALEALAIRITNLEARPKAASEGAAAADPAATGRIDALEKSAASLRDDLTALRSQTDQLAATVKDLKAAP FT GASADEAKPSAEAAGADRAAALEQTTAAMAAIDRRLGVLEAATKAEAEKPAPKTAPAEDGALRRAVAATLLDLAVTQGQP FT FQALLKAAAPLAPDAGSLKPLDRFAATGVPSARALGQELIDQLPNLLPDKTHSNANFIDRFQANAERLVKIQRSDAVEGI FT DRTAIVGRLTAAAKQGDIAAALKELKALAPGDRAPVQSWIDKAEARDQALAASHQFATAALGALQKPSP* FT " FT gene 273502..274911 FT /locus_tag="Rpal_0258" FT /colour=13 FT misc_feature 273793..273861 FT /colour=11 FT /locus_tag="Rpal_0258" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 274920..276617 FT /locus_tag="Rpal_0259" FT /product="HemY domain protein" FT /note="PFAM: HemY domain protein" FT /note="SPTR: Bll0564 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0564 hypothetical protein " FT /note="COGs: COG3898 Uncharacterized membrane-bound FT protein category=S" FT /note="InterPro IPR010817" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLRIVLFLVIIALAAAGAAWVADQPGEVVLSWNDWKASMTLPVFALVIGAGVVAVMLAWAIILGVVRAPSWMKRGRSSRR FT SARARNAITQGLLAVGHGDSGTARLHANAARRHAPHDPLALLLQAQSAQLEGDREGARRAFLAMAARKDTKSLGMRGLYI FT EAQRADDPYAALAIAEEALRVQPNCAWASQAVLGFRCARSDWTGALEILERNLSAGLIDKKAFRRQRAVLLTARAIDLEE FT SDESLARDSALEANKLAPTLVPAAVLAAKYLAEAHQVRRAMKVIEAAWQAQPHPDLASTYANLKPGDTATARLGRVENLV FT GKGPQQLESALAIARAAIDAGSFSRARTVLQPYLDMPTQRVAMLMAEIEHGDRGDTAKARAWTLRAVRALHDPVWTADGY FT VSDHWRPVSPVTGRLDAFQWQVPVSALPSSKAVVVDDKFHDALIASSAGETLPASTTSEAVTVTVEAAPEAPIVAPKEPT FT AVVEEPAKADKPAKTTEAPAEAVAPPAASSSPLFHRRKEAAPVIPIVRAPDDPGVDEDAAPEEFPERAPTPAGQSSGWRG FT YRPPR* " FT sig_peptide 274920..274985 FT /colour=11 FT /locus_tag="Rpal_0259" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.995 at FT residue 22" FT gene 274920..276617 FT /locus_tag="Rpal_0259" FT /colour=13 FT misc_feature order(274932..274985,275049..275117) FT /colour=11 FT /locus_tag="Rpal_0259" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT tRNA 276776..276851 FT /locus_tag="Rpal_R0004" FT /gene="tRNA-Thr1" FT /note="anticodon CGT, Cove Score=97.39" FT /product="tRNA_Thr" FT /colour=8 FT CDS complement(277309..278091) FT /locus_tag="Rpal_0260" FT /product="putative methyl-accepting chemotaxis sensory FT transducer" FT /note="PFAM: histidine kinase HAMP region domain protein" FT /note="SPTR: Phototransducer - Rhodospirillum centenum FT (Rhodocista centenaria)" FT /note="KEGG: atc:AGR_C_4040 putative methyl-accepting FT chemotaxis protein " FT /note="InterPro IPR003660" FT /codon_start=1 FT /transl_table=11 FT /colour=0 FT /translation="MQFDLSNRNLAQKISILVLGITLFASVAIGGVGEMVLHKVTDSHAKQAASVASLDRLVGQGGATLSPVRAADGSIVGMLV FT MQQDAGPVVMPASYEGQGLVVQASETVVTSTPDYGVGAARTMLLLAGVVVFAVVGLVGTRISRGLLAPLGELEKDVERLA FT SGDTSVRIHALSRSDEIGRIARSIAKIQQSLIELAKLKSHRVLDGTNGILSNLKEMWMDLKGAVSNAREMLFTDGRTVSE FT TLSRSWSSWLHNGLGVPKRA* " FT gene complement(277309..278091) FT /locus_tag="Rpal_0260" FT /colour=0 FT misc_feature complement(order(277678..277743,277981..278046)) FT /colour=11 FT /locus_tag="Rpal_0260" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(277999..278091) FT /colour=11 FT /locus_tag="Rpal_0260" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.887) with cleavage site probability 0.839 at FT residue 31" FT CDS 278933..279724 FT /locus_tag="Rpal_0261" FT /product="cobalamin B12-binding" FT /note="SPTR: Cobalamin B12-binding - Methylobacterium FT extorquens PA1" FT /note="KEGG: mex:Mext_4818 cobalamin B12-binding " FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VRAVHTESIVSTVIPHLVVKHTSAKTRVAQDPAEARAAELARLLIAPNLADAFDLIDKSLARASSPTALFTGLFEPTARS FT LGNLWAEDACSEFEVTIGLCHLQTAMRRISFDLLSAPLARSQPRSVLLVSQPGEPHSFCAALHAELLRQAGWNTVSEFPD FT TDRALSELVANGWFDAVNISLSPALRREHWLPRMAETIRKLRAASRNPALAVVASGRVFAERSDAVALVGADAATISSVQ FT IERCLMRSLLNRTARPAANFAWI* " FT gene 278933..279724 FT /locus_tag="Rpal_0261" FT /colour=11 FT CDS 279898..280983 FT /locus_tag="Rpal_0262" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_2399 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MQSETKSYPFDHLPMIDYDAHPAYGRVMSMPMLGARLKAITIFGYGFCLTTAQRMIDVEHLPRPVDAGNRFVTTLRSLPT FT YLRLIMLQRLGRFSAGSAYAPKTERGTAVFTPLARDGFAAVQLSPDKIVELRNQLDAAFKTLEHRVAIPGDPDSTRVVID FT PTAAPDLYKWFNQVAADAGLTEAASGYLKRPVGIGRIAADVSEAPNGALSSPFADVSVDASPCDGFKVDDSYNVLKMVVY FT LGETGAANGPLTYVAGSNRAGRRFWDAMIRRANDLCGLSSTLPAARETFYALPAGLQRKATFGADLVADSNFTTAIAENQ FT VVVTSSQGNAVVYDPAGIHRDGVPSQGRRSAVIVTFTELPR* " FT gene 279898..280983 FT /locus_tag="Rpal_0262" FT /colour=13 FT CDS complement(281011..282309) FT /locus_tag="Rpal_0263" FT /product="RiBisCO-like protein" FT /EC_number="4.1.1.39" FT /note="PRIAM: Ribulose-bisphosphate carboxylase" FT /note="PFAM: ribulose bisphosphate carboxylase large FT chain" FT /note="SPTR: Q93UZ0 Ribulose bisphosphate carboxylase-like FT protein (RuBisCO-like protein). Chromatium vinosum FT (Allochromatium vinosum)." FT /note="KEGG: plt:Plut_0412 ribulose-bisphosphate FT carboxylase " FT /note="COGs: COG1850 Ribulose 1 5-bisphosphate carboxylase FT large subunit category=G" FT /note="InterPro IPR000685" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MTPDDIAGFYAKRADLDLDNYIELDFDFECAGDPREAAAHLCSEQSTAQWRRVGFDEDFRPRFAAKVLELSAEPRPSGFS FT VPVECAARGEVHACRVTIAHPHGNFGAKIPNLLSAVCGEGVFFSPGIPLIRLQDIRFPEPYLAAFDGPRFGIAGVRERLQ FT AFDRPIFFGVIKPNIGLPPQPFAELGYQSWTGGLDIAKDDEMLADVDWCPLAERAALLGDACRRASAETGVPKIYLANIT FT DEVDRLTELHDVAVVNGAGALLINAMPVGLSAVRMLRKHATVPLIAHFPFIAAFSRLANYGIHSRVMTRLQRLAGFDVVI FT MPGFGPRMMTPEHEVLDCIRACLEPMGSIKPCLPVPGGSDSAATLENVYRKVGSADFGFVPGRGVFGHPMGPAAGATSIR FT QAWDAIAAGIPVADHAASHPELAAALKAFGGR* " FT gene complement(281011..282309) FT /locus_tag="Rpal_0263" FT /colour=4 FT CDS complement(282424..282846) FT /locus_tag="Rpal_0264" FT /product="protein of unknown function UPF0047" FT /note="PFAM: protein of unknown function UPF0047" FT /note="SPTR: Putative uncharacterized protein - Chlorobium FT phaeobacteroides BS1" FT /note="KEGG: cph:Cpha266_0672 protein of unknown function FT UPF0047 " FT /note="COGs: COG0432 conserved hypothetical protein FT category=S" FT /note="InterPro IPR001602" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MQIQRHRIELATTAPIQLIDITDQVRRFVTSSGIKDGLVTVSCLHTTARINVNEREEKLERDMLTFLKRFVPRDGDYLHN FT LDPVDGRDNAHSHLIGLFMNSSETIPVAKGTMVLGEWQSVFFIELDGPRERRGVELQIIG* FT " FT gene complement(282424..282846) FT /locus_tag="Rpal_0264" FT /colour=13 FT CDS 283072..285009 FT /locus_tag="Rpal_0265" FT /product="acyltransferase 3" FT /note="PFAM: acyltransferase 3" FT /note="SPTR: Acyltransferase family protein - Burkholderia FT thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP FT 106301)" FT /note="KEGG: bte:BTH_I1858 acyltransferase family protein FT " FT /note="COGs: COG1835 acyltransferase category=I" FT /note="InterPro IPR002656" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MRPAYRSDIDGLRAIAVLLVVGFHAFPAEVRGGFIGVDVFFVISGFLITSIICQALDRGDFSFATFYARRINRIFPALLL FT VLAACAIGGWFLQFPVDYRDAGKAIGFGAAFLANIALLHDSGYFDTSSELNPLLHLWSLGVEEQFYLLWPPVIILAWRWK FT NGAVAAAVAILLASFVTNLLLTPTHQSAAFYLPVTRFWELMTGCLLAIATATRAAPLAQHAARLRNIGAVAGLALIATGA FT TLIDRSRAFPGWWAVLPVLGAALLIGTGPGTWVGRRLLGNRAMVYVGLISYPLYLWHWPVLAAIRIVRLGEEPPPLMKLI FT AVLVAFGLADFTYRFVEPKIRYRPTRAKTAAAFAGVALVGLVGAGIYVAGGVPSRFSAGVQIVARDHQAEAMPAYRLKSC FT FLSSGSTFARECDDAALPGVPRIALWGDSHAAHLYPGLRAVQKSEGGFTLSQYTTAGCPPIFGYVSVQTPGCTAANANAR FT ERLKAIKPDTVILVARQWHDYDGADRDPAAIDAMIKATLAELRSIGIRRIVVVGKFPSWRTPPKRILAQAYRSEAAGLTT FT ASEIPTRDGPPRLDRSEAEANERLRAFFTAQGVEFISPTLVYCNDQGCLLAVPGSGTPVTFDGSHLTIASSQFFVRQIAK FT ELIGR* " FT gene 283072..285009 FT /locus_tag="Rpal_0265" FT /colour=5 FT misc_feature order(283105..283161,283171..283230,283291..283359,283372..283425,283558..283626,283654..283722,283741..283800,283828..283896,283915..283983,284026..284079,284116..284184) FT /colour=11 FT /locus_tag="Rpal_0265" FT /note="11 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(285062..286228) FT /locus_tag="Rpal_0266" FT /product="hypothetical protein" FT /note="SPTR: Probable sugar O-acetyltransferase - FT Flavobacterium psychrophilum (strain JIP02/86 / ATCC FT 49511)" FT /note="KEGG: fps:FP1412 probable sugar O-acetyltransferase FT precursor " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAAITTSPRRWLRRLAAAAFVAMPAWTLWNLAVPSHAVRIGPALVGVTQQVPFDLSLHGFIDGALQKAAVLRIADAMPLR FT RTLIRLNNQIAYSLFGEITAPGILIGRDGELVQRGYLEEYCSRTIGQADTMADAAIPLLRDIQAYYRDRGKLFLYIVTPS FT KVADMPDKFTHLIVCPSSPQARAELVPAYVARLRAAGIDVLDLVTSTHAMRSDDTPPFPRGGIHWNELAMARGSQQIVDA FT INTRAGHELLTPFSFTVTVSSPAEGRDRDLAELANLLVAPIDYPTPKLTYSHPSCDGREATRIDAALVGTSFIDPVSEVL FT TEQACLTRLGQYFYLKLGRSRGGVRQDNLSEAELREVRDVDVMLLEENESLIGRQQYLSLLHQIVTTP* FT " FT gene complement(285062..286228) FT /locus_tag="Rpal_0266" FT /colour=13 FT sig_peptide complement(286115..286228) FT /colour=11 FT /locus_tag="Rpal_0266" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.963) with cleavage site probability 0.536 at FT residue 38" FT CDS complement(286231..287643) FT /locus_tag="Rpal_0267" FT /product="membrane bound O-acyl transferase MBOAT family FT protein" FT /note="PFAM: membrane bound O-acyl transferase MBOAT FT family protein" FT /note="SPTR: Predicted membrane protein - Magnetospirillum FT magneticum (strain AMB-1 / ATCC 700264)" FT /note="KEGG: mag:amb1065 predicted membrane protein " FT /note="COGs: COG1696 membrane protein involved in FT D-alanine export category=M" FT /note="InterPro IPR004299" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MLFYDPLFLTCFPFLYVLYFAAREARTKRWILLIGSGLFYLWGEPLFVPVVVASALIDHLLARRITGSSSVPTKRALLAL FT GVVQNLAILIIYKYTSFALESLNVLLAAGKFSALPVWHIALPIGVSFVTFEKITYLVDSYRGVSQPARRFSDYCLFVFFF FT PKLLAGPILKYHEIDRQIAVPRGFEWSDCGAGLARFAQGAFKKLLIADPLGHSADQVFGADPATLSMGGAWLGTVCFTLQ FT IYFDFSGYSDMAIGIARMLGFSLRENFNMPYISRSITEFWRRWHISLTTWIRDYLYIPLGGNRGNALVTYRNLWICFLLS FT GLWHGASWNFVLWGAYNGLFLTLDRVFLERWLQRGGAVIATMATLLIVMLGWVIFRSPDTAHLGGFFAALAGFGHATAWL FT PPPVSVLWTAALGAALSLIPALPAFGSLGAAWRSSGVLRLAGYVGLAALGTIAIARAVAIPFQPFIYFRF* FT " FT gene complement(286231..287643) FT /locus_tag="Rpal_0267" FT /colour=9 FT misc_feature complement(order(286264..286329,286351..286416,286447..286497,286519..286578,286639..286704,286897..286962,287254..287310,287350..287415,287488..287553,287575..287631)) FT /colour=11 FT /locus_tag="Rpal_0267" FT /note="10 probable transmembrane helices predicted by FT TMHMM2.0" FT tRNA complement(287848..287922) FT /locus_tag="Rpal_R0005" FT /gene="tRNA-Gly3" FT /note="anticodon GCC, Cove Score=88.17" FT /product="tRNA_Gly" FT /colour=8 FT CDS 288238..289158 FT /locus_tag="Rpal_0268" FT /product="thioredoxin" FT /note="TIGRFAM: thioredoxin" FT /note="PFAM: Thioredoxin domain" FT /note="SPTR: Putative thioredoxin - Bradyrhizobium sp. FT (strain ORS278)" FT /note="KEGG: bra:BRADO0321 putative thioredoxin " FT /note="COGs: COG3118 Thioredoxin domain-containing protein FT category=O" FT /note="InterPro IPR005746:IPR006662:IPR013766" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VTILEQGSGAAPQAAADLIKDTTTQSFVRDVIEESKRQPVLIDFWAQWCGPCKQLTPILEKAVRAANGKVKLVKMNIDEH FT PSIPGQMGIQSIPAVIAFVDGRPADGFMGAVPESQVNAFIEKLTAGMPGGAPTAAELLQEAEAVLAEGDVQTAASIYAEV FT LRADGTNVAAIAGLARCYMQTGATEQAKKTLGLVPEAKREDAAVKAVQAMIDLAEQAQSLGPIAELEQKVAADPLDHQAR FT FDLAIALNAADRREDATTHLLDIVKRDRKWNDDGARKQLVQFFEAWGPTDDATVEGRKRLSTILFS* FT " FT gene 288238..289158 FT /locus_tag="Rpal_0268" FT /colour=9 FT CDS 289185..289862 FT /locus_tag="Rpal_0269" FT /product="peptidase S16 lon domain protein" FT /note="PFAM: peptidase S16 lon domain protein" FT /note="SPTR: Blr0595 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0595 hypothetical protein " FT /note="COGs: COG2802 Uncharacterized protein similar to FT the N-terminal domain of Lon protease category=R" FT /note="InterPro IPR003111" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPINAAYRGPADLPEVIPVFPLAGALLLPRGQMPLNIFEPRYLAMIDDALRDGHRLIGMIQPDAAHSSETAEKPSLFNVG FT CVGRITQLAESGDGRYILELTGVSRFKVVDELQVLTPYRQCKVDYFPFVDDFTARKGEDEVDRETLLSVLTDFLKANNLK FT VDWDGVESAPNEALVNALAMMSPYGAPEKQALLEAPDLKTRAEILIAVTEMDLAKKRTSGDPPLQ* FT " FT gene 289185..289862 FT /locus_tag="Rpal_0269" FT /colour=11 FT CDS 289952..290149 FT /locus_tag="Rpal_0270" FT /product="protein of unknown function DUF343" FT /note="PFAM: protein of unknown function DUF343" FT /note="SPTR: Q1QS13 UPF0434 protein Nham_0083. Nitrobacter FT hamburgensis (strain X14 / DSM 10229)." FT /note="KEGG: nha:Nham_0083 protein of unknown function FT DUF343 " FT /note="COGs: COG2835 conserved hypothetical protein FT category=S" FT /note="InterPro IPR005651" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSLSPSERPDTVDRKLLDILVCPVTKGPLEFDPARQELISRGAKLAYPIRDGIPIMLPEEARKLG*" FT gene 289952..290149 FT /locus_tag="Rpal_0270" FT /colour=13 FT CDS complement(290285..291505) FT /locus_tag="Rpal_0271" FT /product="Ubiquinone biosynthesis hydroxylase, FT UbiH/UbiF/VisC/COQ6 family" FT /note="TIGRFAM: Ubiquinone biosynthesis hydroxylase, FT UbiH/UbiF/VisC/COQ6 family" FT /note="PFAM: monooxygenase FAD-binding" FT /note="SPTR: FT 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol FT hydroxylase precursor - Nitrobacter winogradskyi (strain FT Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_0079 2-octaprenyl-6-methoxyphenyl FT hydroxylase " FT /note="COGs: COG0654 2-polyprenyl-6-methoxyphenol FT hydroxylase and related FAD-dependent oxidoreductase FT category=H" FT /note="InterPro IPR002938:IPR003042:IPR010971" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MTAPRSIVIGGGAFAGLALALALRQGLGPEVPVIVADPALALRPSRDPRATAIVAACRRLFEALGVWDEVAPTAQPIIDM FT IVTDSHLEDATRPVFLTFAGEVQPGEPFAHMVENRYLVEALAKRAEAEGVELRATPVTSYDARTEAIGVTLGDGSVIDAS FT LLVAADGAKSKLRQRAGIATYGWDYDQSGIVVTVEHERDHNGCAEEHFLPAGPFAILPLTGRRSSLVWSESRRDAERIVA FT LPEKEFQRELEKRFGLRLGDVKPLDKPKSFPLGYFVAQSFIAPRLALIGDAAHVIHPIAGQGLNMGLRDVAALAEVVVDA FT ARLGIDPGQVDVLEGYQRWRRFDTMAMGVATNGLNFLFSNNSPLLRGIRDIGLGLVDRLPPLKGAFIRQAAGLTGETPRL FT LKGEAL* " FT gene complement(290285..291505) FT /locus_tag="Rpal_0271" FT /colour=12 FT sig_peptide complement(291443..291505) FT /colour=11 FT /locus_tag="Rpal_0271" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.923) with cleavage site probability 0.773 at FT residue 21" FT CDS 291745..292620 FT /locus_tag="Rpal_0272" FT /product="acyl-CoA thioesterase II" FT /EC_number="3.1.2.2" FT /note="TIGRFAM: acyl-CoA thioesterase II" FT /note="PRIAM: Palmitoyl-CoA hydrolase" FT /note="PFAM: acyl-CoA thioesterase" FT /note="SPTR: Acyl-CoA thioesterase II - Bradyrhizobium FT japonicum" FT /note="KEGG: bja:blr0604 acyl-CoA thioesterase II " FT /note="COGs: COG1946 Acyl-CoA thioesterase category=I" FT /note="InterPro IPR003703" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="VSKSLIDLISILDLEPLEVNLFRGTSPKTSWQRVFGGQVIGQAMVAGCRTVENRLPHSLHCYFILPGDPQVPIIYQVERL FT RDGRSYTTRRVTAIQHGNAIFSLMMSFHDDEPTNFDHQDKMPDVPPPEALSAEEIVKQPLFKDMPDFIKRYYESDRPIEL FT RPVELKRYFGQKIDDGRIHVWIKTAAKLPDDPALHMCALAYASDFSLLDAVMARYGRTLFDKRMMPASLDHAMWFHRPFR FT ADEWLLYAQDSPSAQGGRGLTRGQIFKTDGTLVASVAQEGSVRERRDTSKP* " FT gene 291745..292620 FT /locus_tag="Rpal_0272" FT /colour=5 FT CDS complement(292654..293487) FT /locus_tag="Rpal_0273" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - Sorangium FT cellulosum (strain So ce56) (Polyangium cellulosum (strain FT So ce56))" FT /note="KEGG: scl:sce3213 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLQRLVKATNQWMPTAMAFHCCRILASRPPRAEVSAAEQAALAQASRLFELDWSNDAAWSWGSGPTVVLIHGWGGRAAQM FT APLAVELARSGLRAVAFDVAGHGESAEPSAGWEYSIRDIAKVSRQLGSVAGYVGHSAGGLSLMAARRIHGLSPAKYVCVC FT APSHPYPPVRGLAQRLDPRPSVLQRYRTYLGAQFQTDWRSLEAGAAYLGAGDDLLLCYDRKDRFVDPDDGNRIHALCPGS FT RLLTSDAYGHTRILRATEVMREIAKFLNDEASRIAAA* " FT gene complement(292654..293487) FT /locus_tag="Rpal_0273" FT /colour=13 FT CDS 293576..294157 FT /locus_tag="Rpal_0274" FT /product="transcriptional regulator, TetR family" FT /note="PFAM: regulatory protein TetR" FT /note="SPTR: Transcriptional regulator, TetR family - FT Sphingopyxis alaskensis (Sphingomonas alaskensis)" FT /note="KEGG: sal:Sala_0735 transcriptional regulator, TetR FT family " FT /note="InterPro IPR001647" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPRKPKHKEAIVDAAVRLFRRGGYAATGLNDIVEASGAPKGSLYYYFPHGKPSIAEAAVIEAGRRVAATLQELATTATST FT ADLLQAHARQLAGWMSKSGYRDGCPITTVLLELAPEDRAVTKAGRDAYAERIAIFRQRLLDDGIVPARAAALAAMCTSTL FT QGALIQARVERSGRPLIDAALELGELLPRPDVA* " FT gene 293576..294157 FT /locus_tag="Rpal_0274" FT /colour=11 FT CDS 294303..294641 FT /locus_tag="Rpal_0275" FT /product="nitrogen regulatory protein P-II" FT /note="PFAM: nitrogen regulatory protein P-II" FT /note="SPTR: Nitrogen regulatory protein P-II - FT Nitrobacter sp. Nb-311A" FT /note="KEGG: bbt:BBta_0295 regulatory protein for nitrogen FT assimilation, regulates GlnL , GlnE , and AmtB " FT /note="COGs: COG0347 Nitrogen regulatory protein PII FT category=E" FT /note="InterPro IPR002187:IPR002332" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MKLVVAIIKPFKLDEVRQALTEIGVHGMTVTEVKGYGRQRGHTEIYRGAEYIVNFLPKLRIEIAVDSALADKAVEVITRG FT ARTGQIGDGKIFVTPIDRALRIRTGETDVDAL* " FT gene 294303..294641 FT /locus_tag="Rpal_0275" FT /colour=10 FT CDS 294716..296047 FT /locus_tag="Rpal_0276" FT /product="ammonium transporter" FT /note="TIGRFAM: ammonium transporter" FT /note="PFAM: Rh family protein/ammonium transporter" FT /note="SPTR: Ammonium transporter AmtB - Nitrobacter sp. FT Nb-311A" FT /note="KEGG: bbt:BBta_0294 ammonium transport protein (Amt FT family) " FT /note="COGs: COG0004 Ammonia permease category=P" FT /note="InterPro IPR001905:IPR002229:IPR010256" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTLLLRRAASAATGYILATFGLAAVGVTPALAQGMATAAPGISPADTAWMTVATAFVLMMTIPGLALFYSGMVRKKNVLA FT TMAQSLAAVALISILWVAFGYSLAFTGSGSLIGSFDRIFLAGMTMDSVNPAAKTIPEALFMLYQMTFAVITVALVAGSVA FT DRMRFSAYLLFSIGWFICVYVPLAHWIWGGGFLGAMGVLDFAGGLVVHLSAGTGGLVAAIVIGRRHGYGMENLSPFDLSL FT AVIGTGLLWVGWFGFNGGSALAADSRAVFAITATHLAACSGALTWGAIEWMARRKPSVLGMISGAVAGLGTITPASGYVE FT PWHGVVIGIVAGLICYWACTWLKHRLRYDDSLDVFGVHGIGGLTGTFLAGIFATASIGGVSGALEGSWMQPLTQLAGILV FT TFVWSAGATYVLLKAVSLFVALRVSREHEIEGLDISQHGEALQ* " FT sig_peptide 294716..294814 FT /colour=11 FT /locus_tag="Rpal_0276" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.843 at FT residue 33" FT gene 294716..296047 FT /locus_tag="Rpal_0276" FT /colour=9 FT misc_feature order(294752..294820,294863..294931,294968..295036,295127..295195,295214..295282,295325..295384,295421..295474,295517..295585,295604..295672,295685..295738,295775..295843,295886..295954) FT /colour=11 FT /locus_tag="Rpal_0276" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 296357..296695 FT /locus_tag="Rpal_0277" FT /product="nitrogen regulatory protein P-II" FT /note="PFAM: nitrogen regulatory protein P-II" FT /note="SPTR: Nitrogen regulatory protein PII - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0612 nitrogen regulatory protein PII " FT /note="COGs: COG0347 Nitrogen regulatory protein PII FT category=E" FT /note="InterPro IPR002187:IPR002332" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MKIVMAIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVAIANEQVEKTIEAITSA FT AKTGQIGDGKIFVIGLDHAVRIRTGEADAAAL* " FT gene 296357..296695 FT /locus_tag="Rpal_0277" FT /colour=10 FT CDS 296733..298175 FT /locus_tag="Rpal_0278" FT /product="ammonium transporter" FT /note="TIGRFAM: ammonium transporter" FT /note="PFAM: Rh family protein/ammonium transporter" FT /note="SPTR: Ammonium transporter - Bradyrhizobium FT japonicum" FT /note="KEGG: bja:blr0613 ammonium transporter " FT /note="COGs: COG0004 Ammonia permease category=P" FT /note="InterPro IPR001905:IPR010256" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTFKRPYGAGLAVLAAGMFAATAAYAEPTVNKGDNAWMLTSTVLVLLMTIPGLALFYGGLVRSKNMLSVLAQVFYTVCIA FT CIIWALYGYSLAFTGGSDFIGGFSKAFLAGVTTDSKAATFSVDANISELVYVCFQMTFCAITPALIVGAFAERTRFAAVA FT LFIPLWITLIYLPMAHMVWYWAGPDAINDAAKALAAAADEAAKTAAQAKLDEVNADSGFLFKKGAIDFAGGTVVHINAGI FT AGLVGALLVGRRTGYGKELMAPHSLTMTMIGASLLWVGWFGFNAGSNLEASGGAALAMTNSFVATAAAALSWMFAEWIFK FT GHPSVLGALSGAVAGLVAVTPAAGFSGPMGAIVLGLVVGVVCLFFCTVVKNALKYDDSLDVFGVHAVGGIVGAIGTGILV FT NPALGGTGVYDYVAGKVGDYDMTTQLISQCWGVGTTVLLSGIGSAILYKVVDVIVGLRAPVEVEREGLDLVEHTERAYNM FT * " FT sig_peptide 296733..296813 FT /colour=11 FT /locus_tag="Rpal_0278" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.979 at FT residue 27" FT gene 296733..298175 FT /locus_tag="Rpal_0278" FT /colour=9 FT misc_feature order(296751..296810,296838..296906,296943..297011,297117..297185,297204..297272,297414..297482,297519..297578,297606..297674,297693..297761,297771..297839,297873..297941,298008..298076) FT /colour=11 FT /locus_tag="Rpal_0278" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 298294..298641 FT /locus_tag="Rpal_0279" FT /product="DNA polymerase beta domain protein region" FT /note="PFAM: DNA polymerase beta domain protein region" FT /note="SPTR: DNA polymerase beta domain protein region - FT Caulobacter sp. K31" FT /note="KEGG: cak:Caul_1178 DNA polymerase beta domain FT protein region " FT /note="COGs: COG1669 nucleotidyltransferase category=R" FT /note="InterPro IPR002934" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MARGSQGFAPETCYTASMDRRTALEILKNSEAPLRARGVRRAALFGSVTRGTNLPDSDIDVLIEIDPTARITVFDYVELK FT DYIAGLFDHPVDVVNRDQLKPSVAPSAAQDAIYAF* " FT gene 298294..298641 FT /locus_tag="Rpal_0279" FT /colour=11 FT CDS 298743..298988 FT /locus_tag="Rpal_0280" FT /product="protein of unknown function DUF86" FT /note="PFAM: protein of unknown function DUF86" FT /note="SPTR: Putative uncharacterized protein - FT Caulobacter sp. K31" FT /note="KEGG: mrd:Mrad2831_3537 protein of unknown function FT DUF86 " FT /note="COGs: COG2361 conserved hypothetical protein FT category=S" FT /note="InterPro IPR008201" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VYAVTRCLEIISEASRRVSEDIKNRHSSIPWKQIAGSGNVYRHDYEDVAAQMIWETVQRALPALKAMVAEALARCDEQRPQ*" FT gene 298743..298988 FT /locus_tag="Rpal_0280" FT /colour=13 FT CDS 299111..300337 FT /locus_tag="Rpal_0281" FT /product="aminotransferase class I and II" FT /note="PFAM: aminotransferase class I and II" FT /note="SPTR: Aminotransferase - Nitrobacter hamburgensis FT (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0089 aminotransferase, class I and FT II " FT /note="COGs: COG0436 Aspartate/tyrosine/aromatic FT aminotransferase category=E" FT /note="InterPro IPR001176:IPR004838:IPR004839" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MALSASTSPARAAGSVDAAGQSERSPFARLTELLAPYQPGQSLINLSVGEPQHPVPDFVGGVLARYTAEFGRYPLAKGIE FT PFRKAASAWLTKRFALDLAPDPETEVLVLNGSREGLFLAAIAAARYVPKRDGTPAILMPNPFYPAYAAGARAAGCEAVFL FT PTTLANGFLPDLDQLDEATLKRTVAIYLASPANPQGSVASRDYFVRLKQLADRYGFMILSDECYSEIYTQVAPGSAMQVA FT GPNFRNVVVFQSLSKRSNLAGMRVGFVAGDKDFLKAYHELRNVAAPQVPIPLQHVAVAAYSDEAHVEENRRLYRLKFDLA FT DQILGSRYGYQRPAGGFCLWLDVSAHGGDEAATVMLFKDGGVRVVPGSYLARPQADGSNPGAGYIRVAMVQDSETTAEAL FT HRLVRILG* " FT gene 299111..300337 FT /locus_tag="Rpal_0281" FT /colour=10 FT CDS 300351..302819 FT /locus_tag="Rpal_0282" FT /product="cell divisionFtsK/SpoIIIE" FT /note="PFAM: cell divisionFtsK/SpoIIIE" FT /note="SMART: AAA ATPase" FT /note="SPTR: Q89WR2 DNA translocase ftsK. Bradyrhizobium FT japonicum." FT /note="KEGG: bja:blr0616 cell division protein " FT /note="COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE FT and related protein category=D" FT /note="InterPro IPR002543:IPR003593" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSMPAIERAFPLVGHLPPSVREVLARRLRELAGFGLIALAAVAAAALATWSVQDPSLSHATSRRIHNLLGYPGAIGADLA FT MQILGLGAIGLLMPVAVWGWRMLNHRPFDRTALRMGAWFLCTIFAAGFASSFPHDTAWPLPTGLGGVVGDALVRAPSLVF FT GPGLIFRVILSFILGAAVLATFLIAGGFGSREREPDEATSDEDLPLEDEEESDRGSVSLGWLVHALLSAKARLWRLAKLS FT YQGLVSSAPATGKQGFERQEPRLGGRTAPPIAPEADHHDDYEPEPVEEIEDEDDEEEAPPVSRAPRKKAAPKPVAKKARF FT DLPSVNVLSAPKASDRQPLSKSELEANSRALEGVLQDFGVRGEIIKASPGPVVTLYELEPAPGIKSSRVIGLSDDIARSM FT SALSARVAVVPGRNAIGIELPNAHREKVYLRELLSVKDTNETVHKLPLCLGKNIGGESIIVDLARMPHLLIAGTTGSGKS FT VAINTMILSLVYRLRPDQCRLIMVDPKMLELSVYDGIPHLLTPVVTDPKKAVVALKWAVREMEERYKRMAKLGVRNIDGY FT NTRLGEAKAKGEELTRTVHTGFDKETGKAIYEEEKLDLEPLPYIVIIVDEMADLMMVAGKDIEGAVQRLAQMARAAGLHV FT ILATQRPSVDVITGTIKANFPTRISFQVTSKIDSRTILGEMGAEQLLGQGDMLYMAGGGRISRVHGPFVSDEEVEKVVKH FT LKAQGAPEYLEAVTAEEPSEEDGAVFDATGMGGDGGGDLFQQAVAIVKRDRKASTSYIQRRLQIGYNRAASLMERMELEG FT IVGQANHAGKREILVAEEDSNF* " FT gene 300351..302819 FT /locus_tag="Rpal_0282" FT /colour=9 FT misc_feature order(300441..300509,300582..300650,300687..300746,300756..300824,300837..300905) FT /colour=11 FT /locus_tag="Rpal_0282" FT /note="5 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 302837..303778 FT /locus_tag="Rpal_0283" FT /product="outer membrane lipoprotein carrier protein LolA" FT /note="PFAM: outer membrane lipoprotein carrier protein FT LolA" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0134 putative exported protein of FT unknown function " FT /note="COGs: COG2834 Outer membrane lipoprotein-sorting FT protein category=M" FT /note="InterPro IPR004564" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MQGTDTGSRNRHSAPVAADQHRGDAVTAVQDMSLIKQFNDLMPNWTTGTGLRQLCAAAAAAAIIGAAIQPAAAEPVPAPK FT PSPRATQLSAAEPKQRTPQSPAQPVTKLTTPPEPVIPDPRRNVPASIFNTFDAAQKAEAAKASTYLSSLQTLVGQFVQVG FT PDGSKLTGDFYIMKPGRVRFEYDDPSPISMIADGQSVVVRDRKLATQDVYPLSQTPLRYLLSDRLDLLRDTNVVSITSDD FT LYSNIIIEEKNAVIGTSRLLLMFGTKDGQLKQWTVTDPQGYDTTVAVYNLDTTRRPDPSMFKIDYTNYGTPPG* FT " FT gene 302837..303778 FT /locus_tag="Rpal_0283" FT /colour=9 FT CDS 304067..304879 FT /locus_tag="Rpal_0284" FT /product="exodeoxyribonuclease III Xth" FT /note="TIGRFAM: exodeoxyribonuclease III Xth" FT /note="PFAM: Endonuclease/exonuclease/phosphatase" FT /note="SPTR: Exodeoxyribonuclease III - Bradyrhizobium FT japonicum" FT /note="KEGG: bja:blr0618 exodeoxyribonuclease III " FT /note="COGs: COG0708 Exonuclease III category=L" FT /note="InterPro IPR000097:IPR004808:IPR005135" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MRLTLTTWNINSVRLRIDLVAKFLKAQRPDILCLQETKCPDDAFPLKRFKRLGYEHVALNGQKGYHGVAVISKLPFVTTD FT IRTFCDIIDSRHISVSVKTDENAPPLVLHNFYVPAGGDIPDPAVNPKFKHKLSFLDEMKACEPLHPSGDQRHILVGDLNV FT APHEHDVWSHKQLLKVVSHTPVECEKLLAVLRAGNWVDVARERIPLDQKVYTWWSYRAADWTVGDRGRRLDHIWVSEALK FT DRVVDFKVLRDARSWERPSDHVPVTMTMEL* " FT gene 304067..304879 FT /locus_tag="Rpal_0284" FT /colour=2 FT CDS complement(304931..305380) FT /locus_tag="Rpal_0285" FT /product="cyclic nucleotide-binding protein" FT /note="PFAM: cyclic nucleotide-binding" FT /note="SPTR: Bll0619 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0619 hypothetical protein " FT /note="COGs: COG0664 cAMP-binding protein - catabolite FT gene activator and regulatory subunit of cAMP-dependent FT protein kinase category=T" FT /note="InterPro IPR000595" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MSIEDDVALLARVSTLRLLGEQALRMLAIGSEQRDFARGDVMFNVGEPADAGYVVQRGAFQITMENGGVHETVARPGDLI FT GELALVMPMRRQTTAVALEYSTAIRIARSLFQRVLESDPGAALRLRDEFAARANQVASDIVMVGSKLTS* FT " FT gene complement(304931..305380) FT /locus_tag="Rpal_0285" FT /colour=15 FT CDS complement(305420..306106) FT /locus_tag="Rpal_0286" FT /product="two component transcriptional regulator, winged FT helix family" FT /note="PFAM: response regulator receiver; transcriptional FT regulator domain protein" FT /note="SPTR: Two-component response regulator - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0620 two-component response regulator FT " FT /note="COGs: COG0745 Response regulators consisting of a FT CheY-like receiver domain and a winged-helix DNA-binding FT domain category=T" FT /note="InterPro IPR001789:IPR001867" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MPNARKILIVDDDNDLRDALVEQLSLHEEFEASAVDTGAKGVQTAKALSPDLVLMDVGLPDTDGREVVRSLRKGGFKAPI FT IMLTGHDTDSDTILGLESGANDYVAKPFRFAVLLARIRAQLRQHEASEDAVFTVGPYSFRPGSKMLTGANAKKVRLTEKE FT TAILRFLYRAGQAPVSRETLLQEVWGYNSGVTTHTLETHIYRLRQKIERDAANPEILVTEAGGYKLVP* FT " FT gene complement(305420..306106) FT /locus_tag="Rpal_0286" FT /colour=15 FT CDS 306271..306834 FT /locus_tag="Rpal_0287" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0095 hypothetical protein " FT /note="COGs: COG3786 conserved hypothetical protein FT category=S" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKKITKSAPSEKSPRPLARVQVGAAAGQRSRGWLIAGGLTIPVALGRGGILANKREGDGGTPRGTFHPLRLWWRPDRGPR FT PRTHLPIRIIGPDDAWCEDPQSRHYNQPIHRSSAGEGDRLMRDDRLYDLIVEIDHNTRPRIAGRGSAVFLHLARDNFGPT FT AGCVAMTRGNLQRLLARIGPRTKIVIG* " FT gene 306271..306834 FT /locus_tag="Rpal_0287" FT /colour=13 FT CDS complement(306916..307575) FT /locus_tag="Rpal_0288" FT /product="alanine racemase domain protein" FT /note="PFAM: alanine racemase domain protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0174 putative exported protein of FT unknown function " FT /note="COGs: COG0325 enzyme with a TIM-barrel fold FT category=R" FT /note="InterPro IPR001608:IPR011078" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSAAANLAAVEAEIACACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPALVDEYPGTELHLI FT GPLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEEPQKAGIAPQDADAFLVACRERWGLTISG FT LMCIPPVDEAPAPHFALCAKIAKRNGLAKLSMGMSADFATAIQFGATHVRVGSAIFGHR* FT " FT gene complement(306916..307575) FT /locus_tag="Rpal_0288" FT /colour=11 FT CDS 307746..309419 FT /locus_tag="Rpal_0289" FT /product="diguanylate cyclase" FT /note="TIGRFAM: diguanylate cyclase" FT /note="PFAM: GGDEF domain containing protein; histidine FT kinase HAMP region domain protein" FT /note="SPTR: Blr0624 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0624 hypothetical protein " FT /note="COGs: COG2199 FOG: GGDEF domain category=T" FT /note="InterPro IPR000160:IPR003660" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MSRIAIVRKKAKLRALLGIRARLVVLALILVCPLMLDRVRLLEATRTAQLAAMANELSTLAQRTADAEREVISSVEAVLK FT SAAYVHAAAAQAGRSCSILRASLRVDLPSIRMLMVAGPDGVVHCSTSSMFVGSNISDRPYFRKALETHDFVVSDFLVGRQ FT TQKGTILAAYPVSAIDTGEEAVIVAGMNLDWLSDMMSSLAGRAGVNAALIDGEGTVLAAPPDERSLIGKKLDRLALLPAM FT AETPQGRSSITMRDDAGRLMTVSRIPGTSARLVVTVDENKVSAGINHDIRTAYLQLALVCLFVLLGALIAAERLIVQPIS FT VLTGVAKKFAEGNWSARVARKRLPSEFVPLARAFNAMAAQLGQRERELVASNSRLTVMASMDLLSGLANRRGLQSRLDFE FT WMKGQQTGHRLALMMIDVDHFKLFNDSYGHPEGDACLSRIGETLAAVADQTGGFAARYGGEEFCLLLPETGIGRALQVGE FT LVRTTVEQLALPHKTSAFEHVTVSIGVACTLPSEHASPAELIEAADAALYAAKHRGRNNVVEHGFIRASDGPVAMAS* FT " FT gene 307746..309419 FT /locus_tag="Rpal_0289" FT /colour=15 FT misc_feature 307782..307850 FT /colour=11 FT /locus_tag="Rpal_0289" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 309625..312255 FT /locus_tag="Rpal_0290" FT /product="leucyl-tRNA synthetase" FT /note="TIGRFAM: leucyl-tRNA synthetase" FT /note="PFAM: aminoacyl-tRNA synthetase class Ia; tRNA FT synthetase valyl/leucyl anticodon-binding; tRNA synthetase FT class I (M)" FT /note="SPTR: A5E8H4 Leucyl-tRNA synthetase (EC 6.1.1.4) FT (Leucine--tRNA ligase) (LeuRS). Bradyrhizobium sp. (strain FT BTAi1 / ATCC BAA-1182)." FT /note="KEGG: bbt:BBta_0171 leucyl-tRNA synthetase " FT /note="COGs: COG0495 Leucyl-tRNA synthetase category=J" FT /note="InterPro FT IPR001412:IPR002300:IPR002302:IPR013155:IPR015413" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MSNERYNARESEPKWQAKWDEAKIFATRNDDLRKKYYVLEMFPYPSGRIHMGHVRNYTMGDVVARTMRARGYNVLHPMGW FT DAFGLPAENAAIERKIAPKAWTYDNIAAMKKQLQTMGLSLDWAREFATCDPSYYKHQQKMFLDFLKVGLVEREKRKLNWD FT PVDMTVLANEQVIDGRGWRSGAVVELREMNQWVFKITKYAQELLDALDTLDRWPDKVRLMQRNWIGRSEGLMVRFALDSA FT TTPAGETELKIFTTRPDTLFGAKFMAIAADHPLAQAAAAKDPKVAAFIDDCKKRGTAQAEIDTAEKQGIDTGIRAMHPFD FT PSWKLPVYVANFVLMEYGTGAIFGCPAHDQRDLDFVNKYQLGNTPVVCPEGQDPASFVITDTAYDGDGRMINSRFLDGMT FT IVEAKEEVAKRLETAQLGGAPVGERKVNFRLRDWGISRQRYWGCPIPIIHCPTCDVVPVPDADLPVVLPEDVSFDKPGNA FT LDHHPTWKHVTCPKCGGKAVRETDTMDTFVDSSWYFARFTDPWNTEAPTTPDVVNRMMPVDQYIGGVEHAILHLLYSRFF FT TRAMKAAGHIDIQHDEPFAGLFTQGMVVHETYRKADGHFASPAEISITVEGDTRRATLLDGGSPVEIGPIEKMSKSKRNT FT VDPDDIIGTYGADTARWFMLSDSPPDRDVIWSEEGVKGASRFVQRLWRMVNDAAPIAASAPAERPASFGADALTLRKAAH FT GALDKVLSGIERLAFNVSLAHIREFSNTLGDALARSQTPSPDLAWAIRESTVILVQLFHPMMPHLAEECWTVLGQTGLVS FT EALWPQIEPDLLVEDSITLPVQVNGKKRGEVTVPRDAPTSEIEAAVLALDAVKQALGDKPVRKVIVVPQRIVNVVG* FT " FT gene 309625..312255 FT /locus_tag="Rpal_0290" FT /colour=7 FT CDS 312242..312805 FT /locus_tag="Rpal_0291" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0099 hypothetical protein " FT /note="COGs: COG5468 secreted (periplasmic) protein FT category=S" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSSAKPAELKKFVVRLALAVALAAPVAGCFQPMYADRGDGSPTLRDKLNAIEVPPLDIPNGSRNSRLGVELRNKLMFKLY FT GSATGAPPLYTLKISISTSRSSLIVDPSTQLPTIENYAIDASYQLKDIATGKTVVSGNTFSRVEYDVPGQSQRFARTRAG FT RDAEDRAVQEIAENINTRLASFFYAGM* " FT sig_peptide 312242..312328 FT /colour=11 FT /locus_tag="Rpal_0291" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.691) with cleavage site probability 0.515 at FT residue 29" FT gene 312242..312805 FT /locus_tag="Rpal_0291" FT /colour=13 FT misc_feature 312275..312343 FT /colour=11 FT /locus_tag="Rpal_0291" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 312862..313893 FT /locus_tag="Rpal_0292" FT /product="DNA polymerase III, delta subunit" FT /note="TIGRFAM: DNA polymerase III, delta subunit" FT /note="PFAM: DNA polymerase III delta" FT /note="SPTR: Blr0629 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0629 DNA polymerase III subunit delta FT " FT /note="COGs: COG1466 DNA polymerase III delta subunit FT category=L" FT /note="InterPro IPR000209:IPR005790:IPR010372" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MVALRGKDATSFLARPDPGRPIVLLYGPDAGLVRERADALIAASLDDPKDPFALVRLDGDELAAEPSRLVDEALAIPMFG FT GRRAIRVRAGSRSFVAGVEALITSPPRECRIVIEAGDIKPDNALRKACEKAATGAVAIGCYPDAEADIARLIDDELRGSN FT LQIAKDARAVLTTLLGGDRQASRNELRKLALYAHGKGEVTLDDVITCVSDASDLKLDAIVDAAFSGKPVVVETEFAKAMV FT AGTYPGQIILAAQRHAAFLHKTSLVVEGGTPAAVVLDSGFPRLHFSRKAAAETALRNLSTTRLAQIIEQLASAALETRRQ FT ATLGAAIAQRTLLSIAVSARRRS* " FT gene 312862..313893 FT /locus_tag="Rpal_0292" FT /colour=2 FT CDS complement(314155..315045) FT /locus_tag="Rpal_0293" FT /product="parB-like partition protein" FT /note="TIGRFAM: parB-like partition protein" FT /note="PFAM: ParB domain protein nuclease" FT /note="SPTR: Chromosome segregation DNA-binding protein - FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_0094 ParB-like partition protein " FT /note="COGs: COG1475 transcriptional regulator protein FT category=K" FT /note="InterPro IPR003115:IPR004437" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MADEHRSRLGRGLASLIGDVGGEATQVERPRAQRKVPIEFIKANPRNPRRTFTDAELGELSDSIKQHGVIQPIVVRPVKG FT SADRYEIIAGERRWRAAQRAGLHEVPIVPVDVSDALALEIAIVENVQREDLNPLEEALGYQALAAEFNRSQEEIAKIVGK FT SRSHVANMMRLIKLPDDVKSLIASGELTAGHARALIGLPDPSTIAKRIVAEGLNVRQTEALAHEEGVPERKPQKPRATAS FT AKSVKDADTLALEKRLSDALGMKVTIDDHEGTGAVQIRYADLDQLDDIIRRLEVGG* FT " FT gene complement(314155..315045) FT /locus_tag="Rpal_0293" FT /colour=6 FT CDS complement(315218..316072) FT /locus_tag="Rpal_0294" FT /product="Cobyrinic acid ac-diamide synthase" FT /note="PFAM: Cobyrinic acid ac-diamide synthase" FT /note="SPTR: Chromosome segregation ATPase - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0103 cobyrinic acid a,c-diamide FT synthase " FT /note="COGs: COG1192 ATPase involved in chromosome FT partitioning category=D" FT /note="InterPro IPR002586" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTVIDEIYQGDRANSEPGRPRIIALANQKGGVGKTTTAINLGTALAAIGERVLIVDLDPQGNASTGLGIDRRDRNTSTYD FT VLAGEAPLRDAVVATAVPRLHIAASTMDLSGLELELGHRGDRAFRLRDAIGVLNKDIDPPLDYTYVLIDCPPSLNLLTVN FT AMAAADAILVPLQCEFFALEGLSQLLQTVEQVRANLNPSLTIHGIVLTMFDSRNNLSSQVVADVRQFMGKKVYDTMIPRN FT VRISEAPSYGKPVLVYDLKCVGSEAYLKLATEVIQRERELRTTH* " FT gene complement(315218..316072) FT /locus_tag="Rpal_0294" FT /colour=9 FT CDS complement(316100..316771) FT /locus_tag="Rpal_0295" FT /product="methyltransferase GidB" FT /note="TIGRFAM: methyltransferase GidB" FT /note="PFAM: glucose inhibited division protein" FT /note="SPTR: Glucose inhibited division protein B; FT Methyltransferase gidB - Bradyrhizobium sp. (strain FT ORS278)" FT /note="KEGG: bra:BRADO0194 glucose inhibited division FT protein B; methyltransferase GidB " FT /note="COGs: COG0357 S-adenosylmethionine-dependent FT methyltransferase involved in cell division category=M" FT /note="InterPro IPR003682" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MQRAARPLVSVSDLDADKAAALKLIPIPSALEARLDAYVALLQQWQAKTNLVAPSTLPQLWTRHVADSLQLVSLMPHARR FT WLDFGSGGGFPGVVLACAMADVGGHVTLVERIAKKAAFLREALRVAGAPGTVVLADIGDNVDRFPQALDCITARAVAPLH FT QLIGFAEPLMTPGITKALFLKGQDVDAELTESTKYWKFQPKLHASLTGGQGWIVEIDHIERRT* FT " FT gene complement(316100..316771) FT /locus_tag="Rpal_0295" FT /colour=9 FT CDS complement(316944..318812) FT /locus_tag="Rpal_0296" FT /product="glucose inhibited division protein A" FT /note="TIGRFAM: glucose inhibited division protein A" FT /note="PFAM: glucose-inhibited division protein A; FAD FT dependent oxidoreductase" FT /note="SPTR: Q3SWH6 tRNA uridine FT 5-carboxymethylaminomethyl modification enzyme gidA FT (Glucose-inhibited division protein A). Nitrobacter FT winogradskyi (strain Nb-255 / ATCC 25391)." FT /note="KEGG: nha:Nham_0105 tRNA uridine FT 5-carboxymethylaminomethyl modification enzyme GidA " FT /note="COGs: COG0445 NAD/FAD-utilizing enzyme apparently FT involved in cell division category=D" FT /note="InterPro FT IPR001100:IPR002218:IPR004416:IPR006076:IPR013027" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRTSFDVIVIGGGHAGCEAAAAAARIGAATALVTHRFATVGAMSCNPAIGGLGKGHLVREVDALDGLMGRVADAGGIQFR FT MLNRRKGPAVRGPRAQADRKLYAAAMQIAIQGFPNLSVIEGEADALLWQDGRVSGIRLGDGREFAAAAVVITTGTFLRGL FT IHLGERSWPAGRIDEAPAMGLSSSFEALGFKLGRLKTGTPPRLDGRTIDWSAVEMQPGDDPAEPFSVLTPAITTPQIECG FT ITRTTPATHEVIRANVHRSPMYSGQIQSTGPRYCPSIEDKIVKFGDRDGHQIFLEPEGLDDPTVYPNGISTSLPEEVQRA FT ILKTIPGLERTEMLRPGYAIEYDHVDPRELEPTLQTKRLRGLFLAGQINGTTGYEEAAAQGLVAGLNAALSAGGGDRAVF FT DRADGYLGVMIDDLVTRGITEPYRMFTSRAEYRLTLRADNADQRLTDKGLALGCVGVERSAFHHDKMAALSDAKALAQSL FT SITPNEAAKHGLALNRDGQRRSAFDLLSYPEIEWAQVRAIWPELGKVDPAIAVHVEIDAKYHVYLERQTADVEAFRRDES FT LGLTDVDYAAVPGLSNEARTRLERHRPHTVGQAGRLDGITPAALGILAAYLRREQRKRKSTG* FT " FT gene complement(316944..318812) FT /locus_tag="Rpal_0296" FT /colour=9 FT CDS complement(318978..320303) FT /locus_tag="Rpal_0297" FT /product="tRNA modification GTPase TrmE" FT /note="TIGRFAM: tRNA modification GTPase TrmE; small FT GTP-binding protein" FT /note="PFAM: GTP-binding protein HSR1-related" FT /note="SMART: AAA ATPase" FT /note="SPTR: Putative tRNA modification GTPase - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0164 tRNA modification GTPase TrmE " FT /note="COGs: COG0486 GTPase category=R" FT /note="InterPro FT IPR002917:IPR003593:IPR004520:IPR005225:IPR005289" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MHPSDQTIFALATGPLPSAIAILRVSGSRAGDVLRALTGSLPPPRRAVRCDLRSRDGDLIDDGVALWFPTPASATGEDVA FT ELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGFENGKLDLTEAEGLDDLIHADTDAQRRQALRQLGGVLGDRARQW FT RDQIIEALALVEAGIDFSDEGDVADELMGPARAKIAELSAEIAEVLAEQGRGEKLRDGMVVAIAGPPNVGKSTLINRLAR FT REVAIVSPHAGTTRDVIEIQLDLDGYPVTVIDTAGLRDSDDPVEQEGVRRARLRAAAADLVLWLSTATDASDPDVKGPEV FT WRVRNKIDLANGEVAESGPSQPVFRISAATGEGFADLLRELTRFAAQYFGSAEAGLITRDRHRRLLADAAASLTRSLVPG FT LAEEIVAEELRASAHSLGRLLGRVDVEDVLGEIFGRFCIGK* " FT gene complement(318978..320303) FT /locus_tag="Rpal_0297" FT /colour=11 FT CDS complement(320391..321656) FT /locus_tag="Rpal_0298" FT /product="transcription termination factor Rho" FT /note="TIGRFAM: transcription termination factor Rho" FT /note="PFAM: H+transporting two-sector ATPase alpha/beta FT subunit central region; Rho termination factor domain FT protein; Rho termination factor RNA-binding; Ribonuclease FT B OB region domain" FT /note="SMART: AAA ATPase; Cold shock protein" FT /note="SPTR: Transcription termination factor Rho - FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_0100 transcription termination factor FT Rho " FT /note="COGs: COG1158 Transcription termination factor FT category=K" FT /note="InterPro FT IPR000194:IPR003593:IPR004665:IPR011112:IPR011113:IPR011129:IPR013223:IPR013838" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MREIKLQDLKAKTPAELVSFSEELGVENASTMRKQELMFACLKQLSAKETDIIGEGVVEVLSDGFGFLRSPDANYLPGPD FT DIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNSLNFEDPEKSKHKVNFDNLTPLFPDERFRLEIDDPTRKDL FT SARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAV FT RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIA FT TALVDTGSRMDEVIFEEFKGTGNSELILDRKVADKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAIE FT FLLDKLRNTKNNSEFFDSMNT* " FT gene complement(320391..321656) FT /locus_tag="Rpal_0298" FT /colour=6 FT CDS complement(321916..322356) FT /locus_tag="Rpal_0299" FT /product="conserved hypothetical protein" FT /note="PFAM: conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0198 hypothetical protein " FT /note="COGs: COG1981 membrane protein category=S" FT /note="InterPro IPR005265:IPR014351" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MIDWVDVYPWVKTLHVVAVISWMAGMLYMPRLFVYHCTAEVGSTQSETFKIMERRLYRAIMNPAMMVAWVAGLAIAWEQS FT YFTSGWFHAKLAAVVLMTVIHLLLGRYVRDFAADRNTRSHKFYRIINEIPTLLMIAAVLFVIVKPF* FT " FT gene complement(321916..322356) FT /locus_tag="Rpal_0299" FT /colour=13 FT misc_feature complement(order(321928..321981,322045..322110,322123..322188,322252..322317)) FT /colour=11 FT /locus_tag="Rpal_0299" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 322811..323650 FT /locus_tag="Rpal_0300" FT /product="protein of unknown function DUF299" FT /note="PFAM: protein of unknown function DUF299" FT /note="SPTR: A5E8G4 Putative phosphotransferase BBta_0161 FT (EC 2.7.-.-). Bradyrhizobium sp. (strain BTAi1 / ATCC FT BAA-1182)." FT /note="KEGG: bbt:BBta_0161 hypothetical protein " FT /note="COGs: COG1806 conserved hypothetical protein FT category=S" FT /note="InterPro IPR005177" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLTDGSYFHLHLVSDSTGETLITVSRAVTAQYANVTPVEHVYPLVRSQKQLDRVLQEIEEAPGIVLFTLLETELVNRLEA FT KCQEINSPSLSIIGPVMQLFEAYLGASTMGRVGAQHTLNAEYFQRIDALNYSMMHDDGQHVEGLEEADVVLVGVSRTSKT FT PTSIYLANRGIRTANVPLVAGIPIPHQLETLKKPLVVSLHASPERLIQVRQNRLLSLGAGSGNDSYIDRQAVTDEVLLAR FT KLSAKYGWSLLDVTRRSIEETAAAIMKLLADRQRQRVPE* " FT gene 322811..323650 FT /locus_tag="Rpal_0300" FT /colour=13 FT CDS 323647..324255 FT /locus_tag="Rpal_0301" FT /product="Maf family protein" FT /note="PFAM: Maf family protein" FT /note="SPTR: Q89WP0 Maf-like protein blr0638. FT Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0638 Maf-like protein " FT /note="COGs: COG0424 Nucleotide-binding protein implicated FT in inhibition of septum formation category=D" FT /note="InterPro IPR003697:IPR016160" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTLWLGPQPLVLASQSRARQTVLANAGIPFDAIPADIDERGIAEASGLSAPGDIAALLAQQKAAFVSNYHPGRLVLGADQ FT TLALGARGFNKPADRAAAAKQLRELAGRRHELHSAVAVVRNGITLFADVAIARMTMRPLTEAEIEAYLDVVGDKATTSVG FT AYQIEGLGVHLFDGIHGDHFTILGLPLLPLLGFLRSQNLLAV* " FT gene 323647..324255 FT /locus_tag="Rpal_0301" FT /colour=9 FT CDS 324352..324951 FT /locus_tag="Rpal_0302" FT /product="dephospho-CoA kinase" FT /EC_number="2.7.1.24" FT /note="TIGRFAM: dephospho-CoA kinase" FT /note="PRIAM: Dephospho-CoA kinase" FT /note="PFAM: Dephospho-CoA kinase" FT /note="SPTR: Dephospho-CoA kinase - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0114 dephospho-CoA kinase " FT /note="COGs: COG0237 Dephospho-CoA kinase category=H" FT /note="InterPro IPR001977" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MLVLGLTGSIGMGKSTTAKLFAEAGVPVYDADATVHKIYENEAVPAIEAAFPGTTVGGKVDRALLSAKVVHDPAAMKRLE FT GIVHPMLRAHHQQFLDDAESSGAPVAVVDVPLLFETGGEKRVDAVVVVTTSPEVQRERILARDNMTPEKLDAILARQMPD FT AEKRKRADFVVDTSNGLDPVRLQIREILEAAAKMPRRRD* " FT gene 324352..324951 FT /locus_tag="Rpal_0302" FT /colour=12 FT CDS 324987..325685 FT /locus_tag="Rpal_0303" FT /product="DNA polymerase III, epsilon subunit" FT /EC_number="2.7.7.7" FT /note="TIGRFAM: DNA polymerase III, epsilon subunit" FT /note="PRIAM: DNA-directed DNA polymerase" FT /note="PFAM: Exonuclease RNase T and DNA polymerase III" FT /note="SMART: Exonuclease" FT /note="SPTR: DNA polymerase III epsilon chain - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0640 DNA polymerase III epsilon chain FT " FT /note="COGs: COG0847 DNA polymerase III epsilon subunit FT and related 3'-5' exonuclease category=L" FT /note="InterPro FT IPR006054:IPR006055:IPR006309:IPR013520:IPR013838" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPERDMPAEAFAVHGLSSEFLADKPLFAHVADEFLEF FT IGDAPLVIHNASFDIGFINAELSRLSRAPVPRDRLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLA FT EVYIDLIGARQSQLILADVPAEVVGAASENRRRQRPAPLPNRLTEADLEAHRAFIATMGEKAIWPDYLPAGA* FT " FT gene 324987..325685 FT /locus_tag="Rpal_0303" FT /colour=2 FT CDS complement(325765..326238) FT /locus_tag="Rpal_0304" FT /product="protein-export protein SecB" FT /note="TIGRFAM: protein-export protein SecB" FT /note="PFAM: protein export chaperone SecB" FT /note="SPTR: Q3SWG7 Protein-export protein secB. FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)." FT /note="KEGG: nwi:Nwi_0106 preprotein translocase subunit FT SecB " FT /note="COGs: COG1952 Preprotein translocase subunit SecB FT category=U" FT /note="InterPro IPR003708" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTNGNGTPPEGAPPQLNVLAQYTKDLSFENPNAPASLAPQQQQPAINIQINVGANNVGENEYEVTLSIEGKAESGSSVLF FT SFELAYAGVFRVLNVPQENLHPLIMIECPRLLFPFAREIIASAVRDGGFPPLMLDPVDFIGLYRQNLERAQQQGQPS* FT " FT gene complement(325765..326238) FT /locus_tag="Rpal_0304" FT /colour=9 FT CDS 326702..327409 FT /locus_tag="Rpal_0305" FT /product="import inner membrane translocase subunit Tim44" FT /note="PFAM: import inner membrane translocase subunit FT Tim44" FT /note="SPTR: Blr0642 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0642 hypothetical protein " FT /note="COGs: COG4395 conserved hypothetical protein FT category=S" FT /note="InterPro IPR002048:IPR007379" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VDIYTIIFLALAVFIFLRLRNVLGQRTGSERPPFDRAAARDMIPGKQDNNVVSMPGTVIDQAPMAPNADVVPPSDRWKGI FT AEPDSELEHGLNAIAQNDSSFDAQHFITGAKSAYEMIVMAFANGDRRSLRDLLSSEVYESFDAAIKDREKNDLKVETRFV FT SIEKAELISAELRDRTAMLTLKFVSQMISATRDKTGAVVDGSPDKVVDITDVWTFARDTSSRDPNWKLVGTGSGT* FT " FT gene 326702..327409 FT /locus_tag="Rpal_0305" FT /colour=13 FT CDS 327387..328880 FT /locus_tag="Rpal_0306" FT /product="MltA domain protein" FT /note="PFAM: MltA domain protein; 3D domain protein" FT /note="SPTR: Putative membrane-bound lytic murein FT transglycosylase - Bradyrhizobium sp. (strain BTAi1 / ATCC FT BAA-1182)" FT /note="KEGG: bbt:BBta_0155 putative membrane-bound lytic FT murein transglycosylase " FT /note="COGs: COG2821 Membrane-bound lytic murein FT transglycosylase category=M" FT /note="InterPro IPR005300:IPR010611" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="LGPAAAPDVRGARRAALAGCVLAAALLSVLGEADARSRHHHSGARSVSKFAEHHAKYLHPLWPLEIPGGQYLPVAWSEIP FT GWDSDDQLAALKTFRVSCRPILAAGRAPSTDKPLGGSLWEPCHAARSAHLTTAAEARAFFEQHFVPLQISRLSEPLGFVT FT GYYEPVIEGSPVKTDDYVVPVYRRPSNLFVRGYKQEAALPNGGPVFRKIGRRKLVPYYDRGEIEDGAIDGRGLEICWLKS FT QTDLLFAQIQGSARIKLPDGRVIRINYDAHNGFPYTPVGRILIERGIIPREEMSMQRIRDWMDANPDGAKELRRANRSYV FT FFRKVELKDDDEAIGAQGVPLTPGRSIAVDKGLHVYGTPFFITGELPIESPTAKTAFRRLMIGQDTGSAIVGPARADLYF FT GAGAEAGAVAGRIRHPIAFAMLVPKGLDPVARARSLPVPEPRPPAKTNKPAATPSKSGGRDGATTVPTPDSRPATAPSRP FT TGHRHRSYHSRHHRHLR* " FT gene 327387..328880 FT /locus_tag="Rpal_0306" FT /colour=9 FT CDS 328886..329470 FT /locus_tag="Rpal_0307" FT /product="Smr protein/MutS2" FT /note="PFAM: Smr protein/MutS2" FT /note="SPTR: Blr0644 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0644 hypothetical protein " FT /note="COGs: COG2840 conserved hypothetical protein FT category=S" FT /note="InterPro IPR002625" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKRIIPPLDPPMSRRKRSLTEDERALWDGVARQIKPLRGRPRLIKVEIADPQALVPAIKPAPVAPPQPLKRTAKPSLPTA FT PPPLTPLGRRERAHLSRGRKDIDARIDLHGMTQARAHHALLYFLQRASHDGLGFVLVITGKGKSGDTERGVLRRQVPQWL FT ALPEFRAYVVGFDEAHIGHGGEGALYVRVRRARG* " FT gene 328886..329470 FT /locus_tag="Rpal_0307" FT /colour=13 FT CDS complement(329807..331108) FT /locus_tag="Rpal_0308" FT /product="heat shock protein HslVU, ATPase subunit HslU" FT /note="TIGRFAM: heat shock protein HslVU, ATPase subunit FT HslU" FT /note="PFAM: ATPase AAA-2 domain protein" FT /note="SMART: AAA ATPase" FT /note="SPTR: Q3SWE4 ATP-dependent hsl protease ATP-binding FT subunit hslU. Nitrobacter winogradskyi (strain Nb-255 / FT ATCC 25391)." FT /note="KEGG: nwi:Nwi_0129 ATP-dependent protease FT ATP-binding subunit " FT /note="COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) FT ATPase subunit category=O" FT /note="InterPro IPR003593:IPR004491:IPR013093" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTDFSPREIVSELDRFIVGQADAKRAVAIALRNRWRRLQLEGSLREEVLPKNILMIGPTGVGKTEIARRLAKLAGAPFLK FT VEATKFTEVGYVGRDVEQIIRDLVEVAIAQVREKKRKDVQARAQVAAEERVLDALVGPGSGPATRDSFRKKLRAGELNDK FT EIEIETQAGSGSPMFEIPGMPGAQIGAVSLGDIFGKMGGRTKKRRLTVADSHEILVNEEADKLLDTDQLVQEAIAAVENN FT GIVFLDEIDKICVRDGRSGGEVSREGVQRDLLPLIEGTTVSTKHGAVKTEHILFIASGAFHIAKPSDLLPELQGRLPIRV FT ELNALSRDDMRRILTEPEASLIKQYVALMKTEGVTLDFSDDAIDALADVAVAVNSTVENIGARRLQTVMERVLDEISFVA FT PDRHGETFQVDADYVKTNVGDLAKNTDLSRFIL* " FT gene complement(329807..331108) FT /locus_tag="Rpal_0308" FT /colour=9 FT CDS complement(331150..331761) FT /locus_tag="Rpal_0309" FT /product="conserved hypothetical protein" FT /note="SPTR: A5E8F3 UPF0314 protein BBta_0150. FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)." FT /note="KEGG: bbt:BBta_0150 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSMAGAERPVSSAAGLPVRWALAVVLALLAIQATALFAMGRVPICTCGTVKLWHGVVQSSENSQHLTDWYTFSHIIHGFL FT FYAGTWLLLRRWSWTARLIVATLIEGGWELTENSSFIIERYRAGTISLDYYGDSIVNSVADTLAMISGFLLARWLPIAAT FT VAIAVLFEVLVGLHIRDNLTLNVIMLIHPFDAIRQWQAGPPII* " FT gene complement(331150..331761) FT /locus_tag="Rpal_0309" FT /colour=13 FT misc_feature complement(order(331249..331314,331495..331551,331636..331701)) FT /colour=11 FT /locus_tag="Rpal_0309" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(331758..332327) FT /locus_tag="Rpal_0310" FT /product="20S proteasome A and B subunits" FT /note="PFAM: 20S proteasome A and B subunits" FT /note="SPTR: Q1QRX5 ATP-dependent protease hslV (EC FT 3.4.25.-). Nitrobacter hamburgensis (strain X14 / DSM FT 10229)." FT /note="KEGG: nha:Nham_0121 ATP-dependent protease FT peptidase subunit " FT /note="COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) FT peptidase subunit category=O" FT /note="InterPro IPR001353" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MALYSSSADAGPPVWHGTTILTVRKGGKVVIGGDGQVSIGQTVIKANAKKVRKLGKGDVIGGFAGATADAFTLFERLEAK FT LEQYPGQLTRAAVELAKDWRTDRYLRRLEAMMIVADKDVSLVLTGTGDVLEPEAGVMAIGSGGNYALAAARALADTDQDA FT ETIVRKALGIAAEICVYTNGNLTLETLTA* " FT gene complement(331758..332327) FT /locus_tag="Rpal_0310" FT /colour=9 FT CDS 332515..333108 FT /locus_tag="Rpal_0311" FT /product="Imidazoleglycerol-phosphate dehydratase" FT /EC_number="4.2.1.19" FT /note="PRIAM: Imidazoleglycerol-phosphate dehydratase" FT /note="PFAM: imidazoleglycerol-phosphate dehydratase" FT /note="SPTR: Q89WM8 Imidazoleglycerol-phosphate FT dehydratase (EC 4.2.1.19) (IGPD). Bradyrhizobium FT japonicum." FT /note="KEGG: bja:blr0650 imidazoleglycerol-phosphate FT dehydratase " FT /note="COGs: COG0131 Imidazoleglycerol-phosphate FT dehydratase category=E" FT /note="InterPro IPR000807" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MRTATIKRKTKETDIEVTVDLDGTGVANAATGIGFFDHMLDLLAKHSRIDLTVKAVGDLHVDFHHTTEDVGIALGQAVKQ FT ALGNMAGITRYATVLMPMDETLTRVVIDVSGRPFLVFKADFPRDKIGEFDTELVREWFQAFAMNAGVTLHVETLYGENSH FT HIAESCFKGLARALRAAVAIDPKTAGEVPSTKGQLGG* " FT gene 332515..333108 FT /locus_tag="Rpal_0311" FT /colour=10 FT CDS 333136..333657 FT /locus_tag="Rpal_0312" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0123 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPVFTVHAPRADDDEPQRAAPEQFRFVRDGFYFWAFVFGPFWLLYRRLWLATLGYLVVIAASAVALTALHAGSGTRFVVA FT LLLASLLGLEAGSVWRWTLARRGWQSVGVAVGEDREIAERRFFDRWVAGQPQPISFTLPVDRGAPPPARTIPLPASSIHG FT DIFGSFPNPGGSR* " FT gene 333136..333657 FT /locus_tag="Rpal_0312" FT /colour=13 FT misc_feature order(333211..333270,333283..333351,333364..333432) FT /colour=11 FT /locus_tag="Rpal_0312" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 333654..334304 FT /locus_tag="Rpal_0313" FT /product="imidazole glycerol phosphate synthase, glutamine FT amidotransferase subunit" FT /note="TIGRFAM: imidazole glycerol phosphate synthase, FT glutamine amidotransferase subunit" FT /note="PFAM: glutamine amidotransferase class-I" FT /note="SPTR: Imidazole glycerol phosphate synthase subunit FT hisH - Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0146 imidazole glycerol phosphate FT synthase subunit HisH " FT /note="COGs: COG0118 Glutamine amidotransferase FT category=E" FT /note="InterPro IPR000991:IPR010139:IPR011702:IPR012998" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSVAIIDYGSGNLHSAAKAFERAARSMENPEPILVTRDPDQVFRADRVVLPGVGAFADCRKGLDLIDGMVQALNETVRDK FT ARPFFGICVGMQLMATRGKEHVTTDGLNWIAGDVVKIAPNREDLKIPHMGWNTLDQIREHPVLDRLPLGSKGLHAYFVHS FT FHLAAEHEGDVLARADYGGPVTAVVGKDTAIGTQFHPEKSQRFGLALISNFLKWKP* FT " FT gene 333654..334304 FT /locus_tag="Rpal_0313" FT /colour=10 FT CDS 334301..335038 FT /locus_tag="Rpal_0314" FT /product="phosphoribosylformimino-5-aminoimidazole FT carboxamide ribotide isomerase" FT /note="TIGRFAM: phosphoribosylformimino-5-aminoimidazole FT carboxamide ribotide isomerase" FT /note="PFAM: histidine biosynthesis protein" FT /note="SPTR: A5E8E8 1-(5-phosphoribosyl)-5-[(5- FT phosphoribosylamino)methylideneamino] FT imidazole-4-carboxamide isomerase (EC 5.3.1.16) FT (Phosphoribosylformimino-5-aminoimidazole carboxamide FT ribotide isomerase). Bradyrhizobium sp. (stra-TRUNCATED-" FT /note="KEGG: bbt:BBta_0145 FT 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] FT imidazole-4-carboxamide isomerase " FT /note="COGs: COG0106 FT Phosphoribosylformimino-5-aminoimidazole carboxamide FT ribonucleotide (ProFAR) isomerase category=E" FT /note="InterPro IPR006062:IPR006063" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="VILFPAIDLKNGQCVRLEQGDMARATVFNLDPAAQAQSFAAQGFQYLHVVDLDGAFAGKPMNAQAVEAMLKVVSMPVQLG FT GGIRDLKTIEAWLSKGIARVIIGTAAVRDPALVKEAAKAFPGRVAVGLDARDGNVAVEGWAESSQVTALDIAQRFEDAGV FT AAIIFTDIARDGLLKGINWDATIALAEAISIPVIASGGLASIEDVRTLLSPRAKKLEGAIAGRALYDGRLDPTEALALIG FT AAKAA* " FT gene 334301..335038 FT /locus_tag="Rpal_0314" FT /colour=10 FT CDS 335049..335816 FT /locus_tag="Rpal_0315" FT /product="imidazoleglycerol phosphate synthase, cyclase FT subunit" FT /note="TIGRFAM: imidazoleglycerol phosphate synthase, FT cyclase subunit" FT /note="PFAM: histidine biosynthesis protein" FT /note="SPTR: Q1QRX0 Imidazole glycerol phosphate synthase FT subunit hisF (EC 4.1.3.-) (IGP synthase cyclase subunit) FT (IGP synthase subunit hisF) (ImGP synthase subunit hisF) FT (IGPS subunit hisF). Nitrobacter hamburgensis (strain X14 FT / DSM 10-TRUNCATED-" FT /note="KEGG: nha:Nham_0126 imidazole glycerol phosphate FT synthase subunit HisF " FT /note="COGs: COG0107 Imidazoleglycerol-phosphate synthase FT category=E" FT /note="InterPro IPR004651:IPR006062" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MFKVRVIPCLDVKDGRVVKGVNFVDLRDAGDPVEAAIAYDAAGADELCFLDITATHENRGIMLDVVRRTAEACFMPVTVG FT GGVRTVDDIKTLLRSGADKVSINSAAVARREFVKEAAEKFGDQCIVVAIDAKRVPGRDRWEIFTHGGRKGTGIDAIEFAQ FT EVVSLGAGEILLTSMDRDGTKSGFDIPLTRAIADSVGVPVIASGGVGNLDHLVDGIREGHATAVLAASIFHFGEYTIRQA FT KDHMVQAGLPMRLDP* " FT gene 335049..335816 FT /locus_tag="Rpal_0315" FT /colour=10 FT CDS 335870..336193 FT /locus_tag="Rpal_0316" FT /product="phosphoribosyl-ATP diphosphatase" FT /note="TIGRFAM: phosphoribosyl-ATP diphosphatase" FT /note="PFAM: phosphoribosyl-ATP pyrophosphohydrolase" FT /note="SPTR: Q89WM3 Phosphoribosyl-ATP pyrophosphatase 1 FT (EC 3.6.1.31) (PRA-PH 1). Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0655 phosphoribosyl-ATP FT pyrophosphatase " FT /note="COGs: COG0140 Phosphoribosyl-ATP FT pyrophosphohydrolase category=E" FT /note="InterPro IPR008179" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MARFTLHDLAATVDARAASGGESSYTKKLLDKGPEHCAKKFGEEAVEMVIAAVENDRGHLISETADVLFHMLVLLKSRGV FT KLEEVEAALAQRTSMSGLEEKASRKRD* " FT gene 335870..336193 FT /locus_tag="Rpal_0316" FT /colour=10 FT CDS 336268..337224 FT /locus_tag="Rpal_0317" FT /product="pantothenate kinase" FT /EC_number="2.7.1.33" FT /note="TIGRFAM: pantothenate kinase" FT /note="PRIAM: Pantothenate kinase" FT /note="PFAM: phosphoribulokinase/uridine kinase" FT /note="SPTR: Q1QRW8 Pantothenate kinase (EC 2.7.1.33) FT (Pantothenic acid kinase). Nitrobacter hamburgensis FT (strain X14 / DSM 10229)." FT /note="KEGG: nha:Nham_0128 pantothenate kinase " FT /note="COGs: COG1072 Panthothenate kinase category=H" FT /note="InterPro IPR004566:IPR006083" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MDARSDLHHYNPYRVFSRAEWASMREDTPMTLDAAEVAALRSMHDRLDLSEVEEIYLPMSRLLSIHVAAMQQLYYAQRRF FT LGVVERKMPFIIGVAGSVAVGKSTTARVLQALLARWSPRPTVDLVTTDGFLHPNAVLERAGLMQKKGFPESYDLPALLGF FT LSDIKSGRRKVKAPIYSHLTYDIVPNKFTVIDRPDILIVEGVNVLQTGRLPRDGKAVPVVSDFFDFSVYLDADEPVLRDW FT YVRRFLALRDTAFHDPRSYFHRYAVLSDEEATATAIAIWERTNLANLEDNILPTRPRATLILKKGADHVVDSVALRRL* FT " FT gene 336268..337224 FT /locus_tag="Rpal_0317" FT /colour=12 FT CDS complement(337371..338321) FT /locus_tag="Rpal_0318" FT /product="putative hemolysin" FT /note="SPTR: Putative hemolysin - Azorhizobium caulinodans FT (strain ATCC 43989 / DSM 5975 / ORS 571)" FT /note="KEGG: azc:AZC_0076 putative hemolysin " FT /note="COGs: COG3176 Putative hemolysin category=R" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MHTDHLARSKKFIKLLRPETAGAAAQTAITWFKPALKLAETGKPIGPSPATLGRLGPLEVRLAQTKQDVKRAQKLRYRVF FT YKDGTAIADAPTMLARRDKDAFDPICDHLLVVDHAAKPSLSGKQPVVGTYRLLRQDVANRNGGFYTESEFDIGGLITRHP FT ELRFLELGRSCVLPPYRNKRTVELLWHGIWTYVRQHGVDVMLGCASFDGTDPDRLALPLSFLHHYAPAPEAWRARAHPSR FT YVEMNRLPKEAIDQKAALRELPPLIKGYLRLGATIGEGAVIDYQFGTTDVLIILPVSAISARYIEHFGADASRHAA* FT " FT gene complement(337371..338321) FT /locus_tag="Rpal_0318" FT /colour=11 FT CDS complement(338482..340392) FT /locus_tag="Rpal_0319" FT /product="integral membrane sensor hybrid histidine FT kinase" FT /EC_number="2.7.13.3" FT /note="PRIAM: Histidine kinase" FT /note="PFAM: response regulator receiver; ATP-binding FT region ATPase domain protein; histidine kinase A domain FT protein" FT /note="SPTR: Sensor protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0659 two-component hybrid sensor and FT regulator " FT /note="COGs: COG0642 Signal transduction histidine kinase FT category=T" FT /note="InterPro FT IPR001789:IPR003594:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MAGKLRIRSRLRLLARRHPRITMAGRAVMAFSAGFGGAYGLLLGSNPETSGYDPHAFAVGASFLFALACLALAVQTMRLR FT RMRGRLRLLTASQEPPPDLQPNQSKTRALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPLSAEQATY FT AKAVKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAADIDERLPVSLIGDAARLR FT QVLLNLCGNAIKFTETGGVALIVERGDQSDGLRIIVRDTGIGIAPDAQARIFHEFEQADAGIARNFGGTGLGLSISDRIV FT SVMGGRIALESKPGEGSTFTITLPLSAADHDRATAAFAPPDLHGSSVMIVSPHGVEASLAARRLERWGAETCLCDDLAAA FT IARLPERSWHAVLIDHAFGTDTIETLARKALPRATHRLVMLTPAARHELLPDLPAAFTGYLVKPLRAASLAARLGTAVEV FT AAPSIADGDPPPVQDASSAITHEAFAILVAEDNDINALLIRALLHRLGHHAEIVGDGRRAVEAWGAADNTGTPFDLVLMD FT VQMPILDGLAAARQIRTLEAERARSRVPILALTANTLAEDREACLESGMDGFLVKPIDPDRLAAILAGVAAVHQTA* FT " FT gene complement(338482..340392) FT /locus_tag="Rpal_0319" FT /colour=15 FT misc_feature complement(order(340171..340224,340264..340329)) FT /colour=11 FT /locus_tag="Rpal_0319" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(340276..340392) FT /colour=11 FT /locus_tag="Rpal_0319" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.897) with cleavage site probability 0.369 at FT residue 39" FT CDS complement(340519..342057) FT /locus_tag="Rpal_0320" FT /product="Mg chelatase, subunit ChlI" FT /note="TIGRFAM: Mg chelatase, subunit ChlI" FT /note="PFAM: magnesium chelatase ChlI subunit; ATPase FT associated with various cellular activities AAA_5" FT /note="SMART: AAA ATPase" FT /note="SPTR: Bll0661 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0661 hypothetical protein " FT /note="COGs: COG0606 ATPase with chaperone activity FT category=O" FT /note="InterPro FT IPR000408:IPR000523:IPR003593:IPR004482:IPR011704" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MVQHVSTVAFEGIEARSVDVQVQVSPGLPAFAMVGLADKAVSEARERVRSALIASGLALPARRITVNLAPADLPKEGSHY FT DLPIALGLMAAIGAIPADALEGFTVLGELGLDGSIAPVAGVLPAAIAANAREHGLICPAACGSEAAWASPDIQIIAASSL FT IQIANHFKGSQLLGRPQPRVREAEASMLDLRDIKGQESAKRALEIAAAGGHHLLMIGAPGAGKSMLAARLPSILPPLSPA FT ELLEVSMIASVAGEIRDGALTARRPFRAPHHSASMAALTGGGIKARPGEISLAHQGVLFLDELPEFDPRVLDSLRAPLET FT GEVAVSRANHRVTYPARVMLVAAMNPCRCGHAFEPGFACKRGRVDRCTSDYQSRISGPLMDRIDLRIEVPAVSAADLILP FT PPAEGSAEVAARVAAARDVQRTRYASIGLPQIRTNAEAPAAVLETTAQPDSAGLKLLHDAAETMRLSARGYHRVLRVART FT LADLDGCDRIGRVHLAEALSYRALADDQRRAA* " FT gene complement(340519..342057) FT /locus_tag="Rpal_0320" FT /colour=9 FT CDS complement(342157..342381) FT /locus_tag="Rpal_0321" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MNASSKPRGARPITLNPPLKQHAVCIDALASTINRAIEQAEELGISSAVQLLMMARLEVDLTEIALESRTKNSA*" FT gene complement(342157..342381) FT /locus_tag="Rpal_0321" FT /colour=13 FT CDS complement(342378..343034) FT /locus_tag="Rpal_0322" FT /product="putative autoinducer (acylhomoserine lactone) FT synthase" FT /note="SPTR: Putative autoinducer - Bradyrhizobium sp. FT (strain ORS278)" FT /note="KEGG: bra:BRADO0941 putative autoinducer FT (acylhomoserine lactone) synthase " FT /note="COGs: COG3916 N-acyl-L-homoserine lactone FT synthetase category=T" FT /note="InterPro IPR001690" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MQVHVIRRENRALYAGLLEKYFRIRHQIYVVERGWKELDRPDGREIDQFDTEDAVYLLGVDNDDIVAGMRMVPTTSPTLL FT SDVFPQLALAGPVRRPDAYELSRIFVVPRKRGEHGGPRAEAVIQAAAMEYGLSIGLSAFTIVLETWWLPRLVDQGWKAKP FT LGLPQDINGFSTTAVIVDVDDDAWVGICNRRSVPGPTLEWRGLEAIRRHSLPEFQVIS* FT " FT gene complement(342378..343034) FT /locus_tag="Rpal_0322" FT /colour=15 FT CDS complement(343120..343851) FT /locus_tag="Rpal_0323" FT /product="transcriptional regulator, LuxR family" FT /note="PFAM: regulatory protein LuxR; Autoinducer-binding FT domain protein" FT /note="SPTR: Transcriptional regulator, LuxR family - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_7112 putative N-acyl homoserine FT lactone transcriptional regulator, LuxR-like protein " FT /note="COGs: COG2771 DNA-binding HTH domain-containing FT protein category=K" FT /note="InterPro IPR000792:IPR005143" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MIVGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMAGLPSRNAGLPELTLANGWPRDWFDLYVSENFSA FT VDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMTRAAEFGLVEGYCIPLHYDDGSAAISMAGKDPDLSPAARGAMQLVS FT IYAHSRLRALSRPKPIRRNRLTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLGL FT IRL* " FT gene complement(343120..343851) FT /locus_tag="Rpal_0323" FT /colour=6 FT CDS complement(344088..345029) FT /locus_tag="Rpal_0324" FT /product="glutathione synthetase" FT /EC_number="6.3.2.3" FT /note="TIGRFAM: glutathione synthetase" FT /note="PRIAM: Glutathione synthase" FT /note="PFAM: glutathione synthetase domain protein; FT glutathione synthetase ATP-binding; RimK domain protein FT ATP-grasp" FT /note="SPTR: Glutathione synthase - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0145 glutathione synthetase " FT /note="COGs: COG0189 Glutathione synthase/Ribosomal FT protein S6 modification enzyme (glutaminyl transferase) FT category=H" FT /note="InterPro FT IPR004215:IPR004218:IPR006284:IPR011761:IPR013651" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MTLKVAVQMDPIARINIRGDSTFALLLEAQARGHAISYFTPDKLSLRGNDVVASVQSLKVRDQEGDHFTLGEPARVDMRS FT YDVVLLRQDPPFDLAYITSTHLLERIHPATLVVNNPASVRNAPEKLFVMDFAELMPPTLISRDKDEINAFRAEHGAVVMK FT PLHGHGGAAVFRVLPQDINFGSLYDMFAVTFREPWVIQRFLPEVKHGDKRIILVDGEFAGAVNRVPAEDDLRSNMVRGGA FT AAATELSPREREICATLGPKLRERGLLFVGIDVIDGYLTEINVTSPTGIRAVARLGGPDIAAKIWDVIEAKRA* FT " FT gene complement(344088..345029) FT /locus_tag="Rpal_0324" FT /colour=12 FT CDS complement(345102..345494) FT /locus_tag="Rpal_0325" FT /product="protein of unknown function UPF0102" FT /note="PFAM: protein of unknown function UPF0102" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0179 hypothetical protein " FT /note="COGs: COG0792 endonuclease distantly related to FT Holliday junction resolvase category=L" FT /note="InterPro IPR003509" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MAKTDRSHPSVLARIAAFRTGLSAEASAADYLERQGYRILARRFKTRCGEIDLVAQRDALVVFVEVKARGNVDDAAYAVT FT PRQQGRIVAAAEAWLSRHPEHAMSELRFDAILIAPNTAPRHLPGAFDATP* " FT gene complement(345102..345494) FT /locus_tag="Rpal_0325" FT /colour=2 FT sig_peptide complement(345408..345494) FT /colour=11 FT /locus_tag="Rpal_0325" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.622) with cleavage site probability 0.474 at FT residue 29" FT CDS complement(345481..346437) FT /locus_tag="Rpal_0326" FT /product="Uroporphyrin-III C/tetrapyrrole FT (Corrin/Porphyrin) methyltransferase" FT /note="PFAM: Uroporphyrin-III C/tetrapyrrole FT (Corrin/Porphyrin) methyltransferase" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0147 protein of unknown function FT UPF0011 " FT /note="COGs: COG0313 methyltransferase category=R" FT /note="InterPro IPR000878:IPR008189" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MRVKPEISAPPPAAAEPNARTFLVAGQRLVAPRIAPGLHLVATPIGHLGDITLRALETLAGADLIACEDTRITHRLLERY FT GISARLKPYHEHNAAQARPKLLEMLAQGQSVALVSDAGTPLISDPGYKLVREVYAAGHQVIGLPGASAVLVALSLAGLPT FT DRFFFDGFLPSKQGARRTRLGELAAIDATLVLFEAGSRIQNSVHDLADLLGAPREAAICRELTKLHQEVRRATLGELAAQ FT AETMETRGEFVVVIAPPDPASRVMSDDDLDHWLSEALTRLSVKDAVAQAVELSGRHKREIYARALELSRQREADDGED* FT " FT gene complement(345481..346437) FT /locus_tag="Rpal_0326" FT /colour=11 FT CDS 346656..347855 FT /locus_tag="Rpal_0327" FT /product="extracellular ligand-binding receptor" FT /note="SPTR: Extracellular ligand-binding receptor - FT Nitrobacter hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0148 extracellular ligand-binding FT receptor " FT /note="COGs: COG0683 ABC-type branched-chain amino acid FT transport systems periplasmic component category=E" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MASLHDPHTKPLRTTRRTALGLLLGAPLLSACSGVQQSLSDQFGQQQPAAGPAQQPAAVGNGRVKVGLVLPLSAPGNAGL FT AAQSMKNAAEMALAEFRNPDVQLLIKDDAGNPTGAQTATQQALDEGAEIILGPLFAQSVPAAAQAARARGVSVIAFSTDS FT SVAGRGVFLLSFLPESDVNRIIGYAGSIGKRSYAALLPENAYGAVVEAAFKQITSQKGGRIVAFEKYGADRAGPARTIAA FT SLASADALLLADDGDALAAVADALGAAGADLKRVQLLGTGLWDNPRVFATQALQGGLFAAPDPSGFRAFSGRYRARYGQD FT PVRTATLAYDGVALVAALARTQGPQRFSAETLTNPSGFAGIDGLFRFRADGTNERGLAVMKVASGGAQAVAGPPKSFGA* FT " FT sig_peptide 346656..346778 FT /colour=11 FT /locus_tag="Rpal_0327" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.989) with cleavage site probability 0.370 at FT residue 41" FT gene 346656..347855 FT /locus_tag="Rpal_0327" FT /colour=10 FT CDS complement(347873..348235) FT /locus_tag="Rpal_0328" FT /product="transcriptional regulator, HxlR family" FT /note="PFAM: helix-turn-helix HxlR type" FT /note="SPTR: Putative transcriptional regulator - FT Aurantimonas sp. SI85-9A1" FT /note="KEGG: pla:Plav_3490 transcriptional regulator, HxlR FT family " FT /note="COGs: COG1733 transcriptional regulator protein FT category=K" FT /note="InterPro IPR002577" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MTRTHQKVGDLPRSNPAHTPLTAAQGIAAGFRLLEGRWKILILFHLFGGRVLRFSELERSIPDVSQKMLAQQLRQLEADG FT IVARTVHPEVPPRVEYHLTDWGQSLCPALDALLGWVEQKP* " FT gene complement(347873..348235) FT /locus_tag="Rpal_0328" FT /colour=6 FT CDS 348306..348635 FT /locus_tag="Rpal_0329" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - Paracoccus FT denitrificans (strain Pd 1222)" FT /note="KEGG: pde:Pden_4576 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTVSLPAPIEAYFVASNARAVQDVAAAFAADAEVRDEGKIHRGREAIAAWKRAALGKYQMQMEPLTIERAAQTAIVTARV FT AGDFPGSPVRLTYRFGLGEDGITSLEIGA* " FT gene 348306..348635 FT /locus_tag="Rpal_0329" FT /colour=13 FT CDS complement(348640..349797) FT /locus_tag="Rpal_0330" FT /product="oxygen-independent coproporphyrinogen III FT oxidase" FT /EC_number="1.3.99.22" FT /note="TIGRFAM: oxygen-independent coproporphyrinogen III FT oxidase" FT /note="PRIAM: Coproporphyrinogen dehydrogenase" FT /note="PFAM: Radical SAM domain protein; HemN domain FT protein" FT /note="SMART: Elongator protein 3/MiaB/NifB" FT /note="SPTR: Putative oxygen-independent FT coproporphyrinogen III oxidase - Bradyrhizobium sp. FT (strain ORS278)" FT /note="KEGG: bra:BRADO0175 coproporphyrinogen III oxidase FT " FT /note="COGs: COG0635 Coproporphyrinogen III oxidase and FT related Fe-S oxidoreductase category=H" FT /note="InterPro IPR004559:IPR006638:IPR007197:IPR010723" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="LQASSDPAFGVYVHWPFCLSKCPYCDFNSHVRHAAIDEERFARAFAREIATTAERIGPRQVSSIFLGGGTPSLMQPSTVA FT AILDAIARHWHVEPGAEVTLEANPTSVEATRFRGYRAAGVNRVSLGVQALDDASLKALGRMHSAEEALNAVAIAKSAFDR FT YSFDLIYARPGQTAAMWEAELRYAIGEAAEHLSLYQLTIEPDTPFYSLHKAGKLPTPDEAEARALYDVTQSVCAELGLPA FT YEISNHARPGAECRHNLIYWRGHEYAGIGPGAHGRLDIGNARYATATEKRPESWLMRVEATGHGLIADEHLTSEERADEF FT LLMGLRLAEGIDPQRYQLLSGRPLDPSRIALLREEGAIAVDADGRLRVTQEGFPVLDAVVADLAA* FT " FT gene complement(348640..349797) FT /locus_tag="Rpal_0330" FT /colour=12 FT CDS complement(349787..350419) FT /locus_tag="Rpal_0331" FT /product="non-canonical purine NTP pyrophosphatase, FT rdgB/HAM1 family" FT /note="TIGRFAM: non-canonical purine NTP pyrophosphatase, FT rdgB/HAM1 family" FT /note="PFAM: Ham1 family protein" FT /note="SPTR: Nucleoside-triphosphatase - Bradyrhizobium FT sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0185 putative deoxyribonucleotide FT triphosphate pyrophosphatase " FT /note="COGs: COG0127 Xanthosine triphosphate FT pyrophosphatase category=F" FT /note="InterPro IPR002637" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MHRRITGKLVIATHNPGKLAEMRELLAPYGIEAISAGELGLAEPDETGGSFQANARIKAEAAAKAAQLPAFADDSGLTVD FT ALDGAPGIYSARWAGDAKDFAGAMARIERLLQERGATAPERRTAHFVSALCVAWPDGHIEEVEARADGTLVWPPRGTAGF FT GYDPVFLPEGHSRTFGEMTSVEKHGLPPLGLGLSHRAKAFVKLAEICLAG* " FT gene complement(349787..350419) FT /locus_tag="Rpal_0331" FT /colour=16 FT CDS complement(350471..351184) FT /locus_tag="Rpal_0332" FT /product="ribonuclease PH" FT /EC_number="2.7.7.56" FT /note="TIGRFAM: ribonuclease PH" FT /note="PRIAM: tRNA nucleotidyltransferase" FT /note="PFAM: 3' exoribonuclease; Exoribonuclease, FT phosphorolytic domain 2" FT /note="SPTR: Q1QRU5 Ribonuclease PH (EC 2.7.7.56) (RNase FT PH) (tRNA nucleotidyltransferase). Nitrobacter FT hamburgensis (strain X14 / DSM 10229)." FT /note="KEGG: nha:Nham_0151 ribonuclease PH " FT /note="COGs: COG0689 RNase PH category=J" FT /note="InterPro IPR001247:IPR002381:IPR015847" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MRPSRRAPDELRAVSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLERTRREASA FT GKQNGRTVEIQRLIGRSLRTIVDLEALGERQITVDCDVLQADGGTRTASITGAWVALADCLNWMKARNMIKGQVLRDNVA FT AISCGIYNGTPVLDLDYAEDSEAETDANFVMTGDGRLVEVQGTAERTPFSQDEFLQLMALAQKGVARLVDLQKMAVG* FT " FT gene complement(350471..351184) FT /locus_tag="Rpal_0332" FT /colour=7 FT CDS 351340..352428 FT /locus_tag="Rpal_0333" FT /product="heat-inducible transcription repressor HrcA" FT /note="TIGRFAM: heat-inducible transcription repressor FT HrcA" FT /note="PFAM: Negative regulator of class I heat shock FT protein" FT /note="SPTR: Q3SW79 Heat-inducible transcription repressor FT hrcA. Nitrobacter winogradskyi (strain Nb-255 / ATCC FT 25391)." FT /note="KEGG: nwi:Nwi_0194 heat-inducible transcription FT repressor " FT /note="COGs: COG1420 Transcriptional regulator of heat FT shock gene category=K" FT /note="InterPro IPR002571" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="LAQHDPIGLIAPNAGLAQLNERSREIFRQIVESYLATGEPVGSRNISRLISVPLSPASVRNVMADLEQLGLIYAPHTSAG FT RLPTELGLRFFVDALMQIGDLTEPERQSIQAQLSSVGRAHTVEAALGEALTRLSGLTRAAAVVLTAKANVRLKHIEFVRL FT EPERALVILVAEDGQVENRVLTLPPGVPSSALIEAANYLNARIRGRTLAEARLELESLMVQNKAELDQLTQKVIAAGIAS FT WSGGDGEDRQLIVRGHANLLEDLHALDDLERVRLLFDDLETKRGVIDLLGRAESADGVRIFIGSENKLFSLSGSSTIIAP FT YSDGAGHIVGVLGVIGPTRLNYARVIPMVDYTARIVSRMLGG* " FT gene 351340..352428 FT /locus_tag="Rpal_0333" FT /colour=6 FT CDS 352519..353142 FT /locus_tag="Rpal_0334" FT /product="Ribulose-phosphate 3-epimerase" FT /EC_number="5.1.3.1" FT /note="PRIAM: Ribulose-phosphate 3-epimerase" FT /note="PFAM: GrpE protein" FT /note="SPTR: Protein grpE - Bradyrhizobium sp. (strain FT BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0188 protein GrpE (HSP-70 cofactor) FT " FT /note="COGs: COG0576 Molecular chaperone GrpE (heat shock FT protein) category=O" FT /note="InterPro IPR000740" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTETDGQKDNNQDTAQAAADPVVSKPYIMPDDPEEGSNEALVREAADARDKMLRTLAEMENLRKRTQKEVADARTYGVTS FT FARDVLDIADNLQRALDAVPAEARANAEPGLKALIEGVELTERSLLNALEKNGVKKFDPKGQKFDPNFQQAMYEVPDPSV FT PAGTVVQVVQAGFTIGDRVLRPALVGVAKGGAKAAPSDGGSETGNLN* " FT gene 352519..353142 FT /locus_tag="Rpal_0334" FT /colour=9 FT CDS complement(353249..354190) FT /locus_tag="Rpal_0335" FT /product="conserved hypothetical protein" FT /note="SPTR: Bll0679 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0679 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRQIARLFAIALLSAAATNAVAADAVYPRGIRVGIVPMPGLNQSTAFLGFESGDQGVKVLVSELPGPAFDQIDAAFKAAP FT EGSLGNVKPEKIETAAGNGYFTAEDAVVGPDKVRRYSLIVPGSKLFSGYVAVQVPATEAKTYSDEAIKKMLSSVSVRQQV FT PVDEQVAQMPFKIRELGDFKTVRTLAPGAALLLTDGNEEAVETGPFMVLGLIGSVPEKTDDRARFAQQAAEAIPGVRESK FT ITMSEPMRIDGAPGFETRVTGVSGKNNTPVTVVQWLRFGSANVAMRVIGSSPKDQWETAFPRFRKVRDGLQPR* FT " FT gene complement(353249..354190) FT /locus_tag="Rpal_0335" FT /colour=13 FT sig_peptide complement(354122..354190) FT /colour=11 FT /locus_tag="Rpal_0335" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.991 at FT residue 23" FT CDS 354525..356420 FT /locus_tag="Rpal_0336" FT /product="chaperone protein DnaK" FT /EC_number="1.3.1.74" FT /note="TIGRFAM: chaperone protein DnaK" FT /note="PRIAM: 2-alkenal reductase" FT /note="PFAM: Heat shock protein 70" FT /note="SPTR: Chaperone protein dnaK - Bradyrhizobium sp. FT (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0191 chaperone protein DnaK " FT /note="COGs: COG0443 Molecular chaperone category=O" FT /note="InterPro IPR001023:IPR012725:IPR013126" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MGKVIGIDLGTTNSCVAVMDGKSAKVIENAEGMRTTPSIVAITDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDP FT MVEKDKGLVPYKIVKASNGDAWVEADGKTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKI FT AGLEVLRIINEPTAAALAYGLDKAKTGTIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQ FT KEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADQSGPKHLTMKLTRAKFEALVDDLVQKTIEPCRKALK FT DAGLTAGEISEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLG FT GVFTRIIDRNTTIPTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKMLGQFDLMGIPPAPRGMPQIEVTFDIDANGIVN FT VSAKDKATGKEQQIRIQASGGLSDSEIDKMVKDAEANAAEDKKRREAVDAKNHADALVHSTEKALAEHGSKVDESERRSI FT EDALSDLREALKGDDAEAIKAKSNTLAQASMKLGEAMYKQAEAAGGAQQAGKDDVVDAEFTEVDDDKKKSA* FT " FT gene 354525..356420 FT /locus_tag="Rpal_0336" FT /colour=9 FT CDS 356635..357774 FT /locus_tag="Rpal_0337" FT /product="chaperone protein DnaJ" FT /note="TIGRFAM: chaperone protein DnaJ" FT /note="PFAM: DnaJ central domain protein; heat shock FT protein DnaJ domain protein; chaperone DnaJ domain FT protein" FT /note="SPTR: Chaperone DnaJ - Nitrobacter hamburgensis FT (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0156 chaperone DnaJ " FT /note="COGs: COG0484 DnaJ-class molecular chaperone with FT C-terminal Zn finger domain category=O" FT /note="InterPro FT IPR001305:IPR001623:IPR002939:IPR003095:IPR012724" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSTTKRCYYETLEVERNADDSTLKSAFRKLAMKWHPDRNPGDPQCEIKFKEINEAYEVLKDGDKRAAYDRYGHAAFEQGG FT FGGGAGFGAGFASSFSDIFEDLFGMAAQRGRGTGRERGADLRYNMEITLEDAFKGKTAQIEIPVSVTCEACSGTGAKAGT FT KPKTCSTCGGAGRVRQAQGFFTLERTCPSCQGRGQTIEDPCPSCTGSGRVTKERTLSVNIPQGVEDGTRIRLAGEGEAGL FT RGGPPGDLYIFLSLANHAIFQRDGADLHCRVPISMVTAALGGEFEVPTIDRGKTKVKVPSGTQTGRRFRIAGKGMPVLRS FT RQVGDMYVQVVVETPQNLTKKQQELLAEFEKLSSGETQPEAVGFFSKVKEFFGSRASAP* FT " FT gene 356635..357774 FT /locus_tag="Rpal_0337" FT /colour=9 FT CDS 357868..358473 FT /locus_tag="Rpal_0338" FT /product="ribosomal RNA adenine methylase transferase" FT /note="SMART: ribosomal RNA adenine methylase transferase" FT /note="SPTR: PpmtA protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0681 phospholipid N-methyltransferase FT " FT /note="COGs: COG3963 Phospholipid N-methyltransferase FT category=I" FT /note="InterPro IPR001737" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MALQSSVRAFKKPPRPLVDEVRFLRSWIEKPLHMGAVMPSGKLLARTMARYVDIQSDGPVIELGPGTGAITNALVEHGVD FT QKRLVLLEFDPGFCALLRERFPLAKVVQGDAYRLRDSLWDALEIPATAVVSGLPLVTKPMLTRMKLIRDAFTLLEPGAPF FT VQFTYSVAPPIPKSLPGVSTEGSERIWMNVPPARVWVYRKR* " FT gene 357868..358473 FT /locus_tag="Rpal_0338" FT /colour=5 FT CDS 358575..359156 FT /locus_tag="Rpal_0339" FT /product="NADPH-dependent FMN reductase" FT /note="PFAM: NADPH-dependent FMN reductase" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:blr0682 putative oxidoreductase " FT /note="COGs: COG0431 flavoprotein category=R" FT /note="InterPro IPR005025" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSAVKILIIPGSLRTGSHNVRLAATAAHEFARADIDTTWLSLADYALPIYDADFEAKSGVPKNAVGLKRMIGAHHGVLIV FT SPEYNSAPPPLLKNAIDWVSRVEDPHETQGQVFRDRVFALAAASEGKLGGARCLAALRLILSGCRAPVIPNQLALSFAHE FT AYDDNDRLKHPADATALQAMVRQLIDFAQQMMR* " FT gene 358575..359156 FT /locus_tag="Rpal_0339" FT /colour=11 FT CDS 359164..359877 FT /locus_tag="Rpal_0340" FT /product="orotidine 5'-phosphate decarboxylase" FT /EC_number="4.1.1.23" FT /note="TIGRFAM: orotidine 5'-phosphate decarboxylase" FT /note="PRIAM: Orotidine-5'-phosphate decarboxylase" FT /note="PFAM: Orotidine 5'-phosphate decarboxylase" FT /note="SPTR: Q9LCT0 Orotidine 5'-phosphate decarboxylase FT (EC 4.1.1.23) (OMP decarboxylase) (OMPDCase) (OMPdecase). FT Bradyrhizobium japonicum." FT /note="KEGG: bja:blr0683 orotidine 5'-phosphate FT decarboxylase " FT /note="COGs: COG0284 Orotidine-5'-phosphate decarboxylase FT category=F" FT /note="InterPro IPR001754:IPR014732" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MAPVDIPDRDRLIVALDLPDLRVAEAMVDRLGDSVGFYKIGYQLAYAGGLPLARALVGAGKKVFVDLKLHDIGNTVARGV FT ESLSHLGASFLTVHAYPQTMKAAVEARGSSKVKILAVTVLTSYDDRDLADAGYRFGVRDLVEARARQAQAIGVDGLVCSP FT EEAAHLRGIVGPEMDLVTPGIRPAGAAAGDQKRIMTPAKAIAAGASYLVVGRPVLDAPDPKAAADAIVAEIAAARGS* FT " FT gene 359164..359877 FT /locus_tag="Rpal_0340" FT /colour=16 FT CDS 359903..360211 FT /locus_tag="Rpal_0341" FT /product="protein of unknown function DUF1330" FT /note="PFAM: protein of unknown function DUF1330" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0159 conserved hypothetical protein; FT putative dimeric alpha-beta barrel domain " FT /note="COGs: COG5470 conserved hypothetical protein FT category=S" FT /note="InterPro IPR010753" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPKGYWVGRIDVHDLDGYKRDYVAHNGAVFAKYGAKFLTRGGTYEAKEGQARSRNVVIEFKDYETALACYHSPEYQALIK FT ARAPFSEGEMVVVEGYDGPQPS* " FT gene 359903..360211 FT /locus_tag="Rpal_0341" FT /colour=13 FT CDS 360308..361123 FT /locus_tag="Rpal_0342" FT /product="Dihydrodipicolinate reductase" FT /EC_number="1.3.1.26" FT /note="PRIAM: Dihydrodipicolinate reductase" FT /note="PFAM: dihydrodipicolinate reductase" FT /note="SPTR: Dihydrodipicolinate reductase - Nitrobacter FT hamburgensis (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0158 dihydrodipicolinate reductase " FT /note="COGs: COG0289 Dihydrodipicolinate reductase FT category=E" FT /note="InterPro IPR000846:IPR011770" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSEMRLIVAGAGGRMGRALTRAISETEGVVLTGALESPNSELLGKDAGTLAGLPANGVLLSADLWSLSANADGIVDFTVP FT QATIANVAIAAQRGIAHIIGTTGLSTSDNAVIQSVTDRAVVVKSGNMSLGVNLLAAIAKRVAQSLDDSFDIEIVEMHHRA FT KVDAPSGTALLLGEAVAAGRKIDLATHSARGRDGFTGARKPGDIGFASLRGGTVTGDHTVIFAGASERIELTHKAEDRMI FT FAHGALTAARWAKGKKPGLYSMADVLGLGDI* " FT gene 360308..361123 FT /locus_tag="Rpal_0342" FT /colour=10 FT CDS complement(361203..362717) FT /locus_tag="Rpal_0343" FT /product="phosphoglycerate mutase, FT 2,3-bisphosphoglycerate-independent" FT /EC_number="5.4.2.1" FT /note="TIGRFAM: phosphoglycerate mutase, FT 2,3-bisphosphoglycerate-independent" FT /note="PRIAM: Phosphoglycerate mutase" FT /note="PFAM: metalloenzyme domain protein; BPG-independent FT PGAM domain protein" FT /note="SPTR: Phosphoglycerate mutase - Granulobacter FT bethesdensis (strain ATCC BAA-1260 / CGDNIH1)" FT /note="KEGG: gbe:GbCGDNIH1_1712 phosphoglycerate mutase " FT /note="COGs: COG0696 Phosphoglyceromutase category=G" FT /note="InterPro IPR000408:IPR005995:IPR006124:IPR011258" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MQSRRPVMLVILDGWGWREDPADNAVLQAKTPTFDALWTNGPHAFLRTSGKSVGLPNGQMGNSEVGHLNIGAGRVVMQDL FT PRISDAIANGEIERAPGLVAFIEKLKASGGTCHLMGLVSPGGVHSLQDHACALAKILTKAGVKTVLHAFTDGRDTPPKSA FT VDDIVRLRAELPPNVPIATVSGRYYAMDRDNRWERVSKAYGVIADADGPRFANADAVIADGYAAGVNDEFIVPAVVGDYQ FT GMRDGDGVLCFNFRADRVREILAALLDPAFAGFPRKQVKQIAAAAGMTQYSTALDALMGTIFPPQSLVNGLGQVVADAGL FT HQLRMAETEKYPHVTYFLNGGEEVPYPGEDRIMVPSPKVATYDLQPEMSAPELGDKAVAAIESGKYDLIVLNFANPDMVG FT HTGSLPAAIKAVETVDTQLGHIVAAIRKAGGALLVTADHGNCEMMRDPETGGPHTAHTTNPVPVLLVGDNGPLADGQLSD FT LAPTLLKLMELPQPAEMTGKSLIG* " FT gene complement(361203..362717) FT /locus_tag="Rpal_0343" FT /colour=4 FT CDS complement(362809..363741) FT /locus_tag="Rpal_0344" FT /product="transcriptional regulator, AraC family" FT /note="TIGRFAM: methylated-DNA/protein-cysteine FT methyltransferase" FT /note="PFAM: helix-turn-helix- domain containing protein FT AraC type; Methylated-DNA-[protein]-cysteine FT S-methyltransferase DNA binding" FT /note="SPTR: Transcriptional regulatory protein - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:bll0687 transcriptional regulatory FT protein " FT /note="COGs: COG0350 Methylated DNA-protein cysteine FT methyltransferase category=L" FT /note="InterPro IPR000005:IPR001680:IPR014048" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="VAARAAADNISGMMNLAIADHQLIKPGARDSALADYDCVRRAIAFISQKWKAQPTIEAIADAAGLTPDELHHLFRRWAGL FT TPKAFMQALTLDHAKSLLRDSASVLDAALASGLSGPGRLHDLFVTHEAMSPGEWKSGGAGLSLRYGFHPSPFGTAVIIAS FT DRGLAGLAFADPDEEQAALVDLQQRWPRAVCTQDQDATAPLARRIFDPAQWRAEQPLRVVLIGTDFEVRVWETLLKIPLG FT KAVCYSDIAAKISLPKASRAVGAAVGKNPISFVVPCHRALGKGGALTGYHWGLTRKQAMIGWEAGQLRAE* FT " FT gene complement(362809..363741) FT /locus_tag="Rpal_0344" FT /colour=2 FT CDS complement(363756..364271) FT /locus_tag="Rpal_0345" FT /product="putative membrane protein of unknown function" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)" FT /note="KEGG: bbt:BBta_0200 putative membrane protein of FT unknown function " FT /note="COGs: COG5488 Integral membrane protein category=S" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAIEPDLGLDSREPKLFSARLKPHRALSHNGFLILIGLVGTASFAAGLAFWMMGAWPVFGFFGLDVLALAFAFKVSFARA FT RASEEISMTCSELRVRRTSARGEVAEWVLNPLWVRLEKIVHHDAGIERLYLVSSGRRLAIASFLGAEEKANFAKALMAAL FT DAARRGPLYPA* " FT gene complement(363756..364271) FT /locus_tag="Rpal_0345" FT /colour=13 FT misc_feature complement(order(364038..364103,364116..364181)) FT /colour=11 FT /locus_tag="Rpal_0345" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 364294..365079 FT /locus_tag="Rpal_0346" FT /product="endonuclease III" FT /EC_number="4.2.99.18" FT /note="TIGRFAM: endonuclease III" FT /note="PRIAM: DNA-(apurinic or apyrimidinic site) lyase" FT /note="PFAM: helix-hairpin-helix motif; HhH-GPD family FT protein" FT /note="SMART: iron-sulfur cluster loop" FT /note="SPTR: Endonuclease III DNA-(Apurinic or FT apyrimidinic site) lyase - Bradyrhizobium sp. (strain FT ORS278)" FT /note="KEGG: bra:BRADO0152 endonuclease III DNA-(apurinic FT or apyrimidinic site) lyase " FT /note="COGs: COG0177 EndoIII-related endonuclease FT category=L" FT /note="InterPro FT IPR000445:IPR003265:IPR003651:IPR004035:IPR005759" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MPKTTRRPARPAAKTPAASPAKPAKRTAGAKPKSVSAKSAPSRRGKSPRRWSAAEVQEAFSRFAKANPEPKGELEHLNPF FT TLLVAVVLSAQATDAGVNKATRPLFAVADTPQKMLALGEDRVREYIKTIGLFRTKAKNVIALSQKLITDFGGEVPNTREA FT LETLPGAGRKTANVVLNMAFGQPTMAVDTHVFRVGNRTGLAPGDTPLAVELELERVIPAEFMQHAHHWLILHGRYTCLAR FT KPRCEVCLINDLCRWPEKTVS* " FT gene 364294..365079 FT /locus_tag="Rpal_0346" FT /colour=2 FT CDS complement(365195..366760) FT /locus_tag="Rpal_0347" FT /product="peptidase S10 serine carboxypeptidase" FT /note="PFAM: peptidase S10 serine carboxypeptidase" FT /note="SPTR: Bll5514 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll5514 hypothetical protein " FT /note="COGs: COG2939 Carboxypeptidase C (cathepsin A) FT category=E" FT /note="InterPro IPR001563" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MPLSPRSAVTASMLIAALALPQFGSSAVAQEARPAAPHAERAKPNAEQADAVASKAEASPARAELNSLPPDVTTKHSLAL FT PGRTLAFTATAGSIRLFNGKGEPQADVAITTYKLDGADARTRPVTFLFNGGPGASSAWLQLGAAGPWRLPIGNSVVASSP FT PVLQANAETWLDFTDLVFIDPVGTGYSRFVASGDEVRKHFYAVEGDISAMAVVIRRWLEKNDRLVSPKYLAGESYGGIRG FT PKVVDNLQTKQGVGVNGLILVSPVLDFRDLSGSSLLQYAARLPSMTAVARQQKGKVNRADLADVESYARSEFLTDLVKGE FT ADKEATTRLADRVSALTGIDKTVSRRLAGRFDTREFQREFDRDRGRVTGRFDGAKLGLDPFPDSSAAHFGDPSADSLIAP FT LTSAAVQLTRSTLNWKPDGSYELLNSSVAEQWDFGRGRQPLESTTQLREILSVDPSLQVLVTGGLFDLAAPYFGTQMVLD FT QLPPTLAEKRVKFVVYPGGHMFYAEDAARQSLHDEVKAMMK* " FT gene complement(365195..366760) FT /locus_tag="Rpal_0347" FT /colour=10 FT sig_peptide complement(366671..366760) FT /colour=11 FT /locus_tag="Rpal_0347" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.961 at FT residue 30" FT CDS complement(366889..367857) FT /locus_tag="Rpal_0348" FT /product="magnesium chelatase accessory protein" FT /note="TIGRFAM: magnesium chelatase accessory protein" FT /note="PFAM: alpha/beta hydrolase fold" FT /note="SPTR: Formerly designated BchO. In Rhodobacter FT capsulatus - Acidiphilium rubrum" FT /note="KEGG: bbt:BBta_6446 putative alpha/beta hydrolase, FT putative protoporphyrin IX magnesium chelatase BchO-like FT protein " FT /note="COGs: COG0596 hydrolase or acyltransferase FT (alpha/beta hydrolase superfamily) category=R" FT /note="InterPro IPR000073:IPR000639:IPR003089:IPR017497" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="LVNPARDPLHTSSSRTAATRPHCPKPEWERDSHDWPHRDTSRFVEAGGLRWHVQLMGRGPALLLLHGTGAATHSWRQLAP FT LLAEHFTVIAPDLPGHGFTETPARKRMSLEGMAADIAALLRTLGHRPMLVAGHSAGVAVLARMCLDGAIAPAGLVSLNGA FT LLPIGGRAGRWMLPLARLLAVSTMVPRLVARFAHRQGLVERMIADTGSSLDPHGIELYRRLVCSPGHVAAALTMMASWRL FT EQLTAELPHLAPHLLLIAGSNDKTIASADAGRVQAIVPGARAIVMPGLGHLAHEERPQDVAGLIVEFAREHGALPPALAA FT AE* " FT gene complement(366889..367857) FT /locus_tag="Rpal_0348" FT /colour=11 FT CDS complement(368431..369174) FT /locus_tag="Rpal_0349" FT /product="protein of unknown function DUF540" FT /note="PFAM: protein of unknown function DUF540" FT /note="SPTR: Putative uncharacterized protein - FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)" FT /note="KEGG: nwi:Nwi_0060 CysZ-like protein " FT /note="COGs: COG2981 Uncharacterized protein involved in FT cysteine biosynthesis category=E" FT /note="InterPro IPR007496" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MLDAAIKALTQILSPPMRSILWRSVGFALALIAVAAIGLQRLLSWAATSSELWAEAALGGFQTPLYILSWVLSIAAGLGI FT VVGAVFLMPAVTSLVAGIFVDEAAEHVERESYPHEAPGVALPIGLATWETVKTALLTILVYLVALPFLFVAGAGAIVFFV FT ATAWLLGREYFELAAMRFRTAPEAKAMRRDNATTVFIGGLIIAAFVSIPIVNLATPLFGMAFMVHLHKRLSGSRPEVLAP FT DQRSMRR* " FT gene complement(368431..369174) FT /locus_tag="Rpal_0349" FT /colour=10 FT misc_feature complement(order(368533..368598,368692..368757,368911..368976,369046..369111)) FT /colour=11 FT /locus_tag="Rpal_0349" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(369034..369174) FT /colour=11 FT /locus_tag="Rpal_0349" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 0.890) with cleavage site probability 0.850 at FT residue 47" FT CDS complement(369262..371094) FT /locus_tag="Rpal_0350" FT /product="[Isocitrate dehydrogenase (NADP(+))] kinase" FT /EC_number="2.7.11.5" FT /note="PRIAM: [Isocitrate dehydrogenase (NADP(+))] kinase" FT /note="PFAM: Isocitrate dehydrogenase kinasephosphatase" FT /note="SPTR: Bifunctional isocitrate dehydrogenase FT kinase/phosphatase protein - Alteromonadales bacterium FT TW-7" FT /note="KEGG: bpt:Bpet0058 isocitrate dehydrogenase FT kinase/phosphatase " FT /note="COGs: COG4579 Isocitrate dehydrogenase FT kinase/phosphatase category=T" FT /note="InterPro IPR010452" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MTATASHTRARPLGASEIEHATRIAEPDFDLLDALYRTDDPDDQARLLARVVLSAFDNYYAVSRRIPALAQAAFEARDWP FT VTVRLSKIRIGLYTACIDQLVPLLKAGLPELTTDEQLWPTAEAELLAAIEGRYEADFAFAFWQSLRRKLVSDEWRPVSYD FT AGSTARRTTSPAAVLKTTTTTLPITAEVIAGILGDAGFRVPWRDRDGDAALAAQAIETALEPLSPRPGEPVKIEIADAGF FT FRNRGACLVGRIQLRDRGDMPMRNLPLLIALLNEKDGLVVDAVLTDSDELQYAFSSTLANYHATNPRYHELARLLYELMP FT KRPLGTQYSCIGFHHLGKVAVMSEILAEHRKTKERLATAPGFKGTVAIAFTMPSSAYVLKIIRDHPTDDYKFDYFDGLDE FT VLRKYNLVHEIDRAGSMLDNIIYSNVKLDRAMFAPELLDELLEAGIGTVTLDRGALVFRHLIVQIKLTPLPLYLANASAA FT ESRAAVINLGDCIKNNAAADIFNKDLDGRNYGVSRIRKVYLFDYDAVEPLTSVTVSRDGAAPGEFDNGMVFRPQEMLEGL FT RIDDPGLRRAFRDAHPELMQADYWEGMQRALRDGKVPKVMNYPASRRLQR* " FT gene complement(369262..371094) FT /locus_tag="Rpal_0350" FT /colour=15 FT CDS complement(371430..372281) FT /locus_tag="Rpal_0351" FT /product="alpha/beta hydrolase fold" FT /note="PFAM: alpha/beta hydrolase fold" FT /note="SPTR: Alpha/beta hydrolase fold - Methanoregula FT boonei (strain 6A8)" FT /note="KEGG: mbn:Mboo_0148 alpha/beta hydrolase fold " FT /note="COGs: COG0596 hydrolase or acyltransferase FT (alpha/beta hydrolase superfamily) category=R" FT /note="InterPro IPR000073" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MAKLTQFLISGACALLITATSAIADPIAPAGKPIGQDAGGRTIYQVDANGISIGYKLIGQGAPMVMIMGLGGTAENWPPQ FT VVEALSKNHQLILMDNRGMGHTTANDNPFSYPLFAADVIGLLDALGVKRSDVLGYSMGSTITQQLLLQYPDRFNKALIHA FT TSTDGSNVAKALHGRVPADPIVARQVEATTHWKTPLDKLPSIDNQVMLVVGTADNVVGTESSKTIASAIPGAWLVQFKGA FT THHLMYETPEGFSAAALTFFETNETVTPKIEPNASVAPPPTQP* " FT gene complement(371430..372281) FT /locus_tag="Rpal_0351" FT /colour=11 FT misc_feature complement(372195..372260) FT /colour=11 FT /locus_tag="Rpal_0351" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(372207..372281) FT /colour=11 FT /locus_tag="Rpal_0351" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.997 at FT residue 25" FT CDS 372492..373664 FT /locus_tag="Rpal_0352" FT /product="DNA-cytosine methyltransferase" FT /note="TIGRFAM: DNA-cytosine methyltransferase" FT /note="PFAM: C-5 cytosine-specific DNA methylase" FT /note="SPTR: Cytosine-specific methyltransferase - FT Anaeromyxobacter dehalogenans (strain 2CP-C)" FT /note="KEGG: ade:Adeh_3442 DNA-cytosine methyltransferase FT " FT /note="COGs: COG0270 Site-specific DNA methylase FT category=L" FT /note="InterPro IPR001525" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MKVAGLFAGVGGLELGLHRAGHDTLVFSEIWDPAGAVLERRFGGVPNVGDVASLKSLPADVDLMTAGFPCQDLSQAGKTA FT GIRGRKSGLVSHVFRLIDRSRPKWVLLENVSFMLRLDAGSAMTRLVSEFEQRGYRWAYRVVNSLSFLPHRRARVFFLASL FT EGDPADVLLVDDAEPAEPQTNLRSHAHGFYWTEGTRGLGWGPDCIPTLKNGSTIGIPSPPAILLTNGEIVTPDIRDAERL FT QGLPADWTKPAAQVTRASFRWSLVGNAVSTPVAAWIGKRLVKPGQFDPARDGAAVVKGNWPKAARSDGEVRREVMISEFP FT KWAKRESLQDFLRHQPNLLSVRATAGFLSRIEKSSLRFVPGFKDKVRAHLEHVRAIDSFVEPSRLLVAAE* FT " FT gene 372492..373664 FT /locus_tag="Rpal_0352" FT /colour=2 FT CDS 373661..374077 FT /locus_tag="Rpal_0353" FT /product="DNA mismatch endonuclease Vsr" FT /note="TIGRFAM: DNA mismatch endonuclease Vsr" FT /note="PFAM: DNA mismatch endonuclease vsr" FT /note="SPTR: DNA mismatch endonuclease vsr - FT Methylobacterium nodulans ORS 2060" FT /note="KEGG: ppw:PputW619_0683 DNA mismatch endonuclease FT Vsr " FT /note="COGs: COG3727 DNA G:T-mismatch repair endonuclease FT category=L" FT /note="InterPro IPR004603" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MTSPGFEKPTDPARSALMRRVRQTGTKAEDEVAAILRQSGLRFRRNVKSLPGSPDFANKTNQWAIFVHGCFWHRHEGCPR FT TTTPTRNRDFWLAKFAANVNRDTIKARLLRAMGFKVLTIWECETRNPSNVRRRLQRLR* FT " FT gene 373661..374077 FT /locus_tag="Rpal_0353" FT /colour=2 FT CDS 374082..374903 FT /locus_tag="Rpal_0354" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Anaeromyxobacter dehalogenans (strain 2CP-C)" FT /note="KEGG: ade:Adeh_3444 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAKNKKIARKFATDQANLLENSIRRELDWAGDRSVVEKGSATDKKNYAEGLSRALSQRFADALRKSFDGILPDVDGFGQE FT SKARTGKGLKKLDVNYSTVELGLGLGVSIKTINFRDAKTKRYTKNYTRVDNELRAEAADYHERQPYAVLCAVVFIPLDAC FT DDGGSAPSSFGQAVQIFRYRAGRERPVDDATLFERILVGLYDAGSPCFGTTGFFDVMDAPPRTGRPSALMTFEQAIDKIV FT EAYDARNKSAFKWAEGETEILAAPEAEDDEDET* " FT gene 374082..374903 FT /locus_tag="Rpal_0354" FT /colour=13 FT CDS complement(374910..376721) FT /locus_tag="Rpal_0355" FT /product="GTP-binding protein LepA" FT /note="TIGRFAM: small GTP-binding protein; GTP-binding FT protein LepA" FT /note="PFAM: elongation factor G domain protein; protein FT synthesis factor GTP-binding; elongation factor Tu domain FT 2 protein; GTP-binding protein LepA domain protein" FT /note="SPTR: Q89BJ8 GTP-binding protein lepA. FT Bradyrhizobium japonicum." FT /note="KEGG: bja:blr8150 GTP-binding protein LepA " FT /note="COGs: COG0481 Membrane GTPase LepA category=M" FT /note="InterPro FT IPR000640:IPR000795:IPR004161:IPR005225:IPR006297:IPR013842" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTTAPIDNIRNFSIVAHIDHGKSTLADRLIQITGGMSDREMAGKEQVLDSMDIERERGITIKAQTVRLKYRAHDGKDYIF FT NLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYHALDAGHEIVPVLNKVDLPAAEPEKIKQQIEDVIGL FT DASDAVMISAKTGLGVPDVLEAIVTRLPPPKGDRDATLKALLVDSWYDVYLGVVVLVRVVDGVLKKGQRIRMMGTGAAYD FT VERVGYFTPKMVNVEELGPGEVGFITAAIKEVADTRVGDTITDDKKPVTDMLPGFKPAIPVVFCGLFPVDADDFETLRAA FT MGKLRLNDASFSFEMETSAALGFGFRCGFLGLLHLEIIQERLSREFDLDLIATAPSVIYKMKLTDGTEMEIHNPVDMPDV FT VKIAEIEEPWIEATILTPDEYLGSVLKLCQDRRGNQKELTYVGARAMVKYDLPLNEVVFDFYDRLKSVSKGYASFDYHLT FT DYKPADLVKMQILVNAEPVDALSMLVHRTRAEGRGRAMVEKMKELIPPHMFQIPIQAAIGGKVIARETVRALRKDVTAKC FT YGGDITRKRKLLEKQKEGKKKMRQFGKVDIPQEAFIAALKVDS* " FT gene complement(374910..376721) FT /locus_tag="Rpal_0355" FT /colour=9 FT CDS 376866..378404 FT /locus_tag="Rpal_0356" FT /product="conserved hypothetical protein" FT /note="SPTR: Putative uncharacterized protein - FT Bradyrhizobium sp. (strain ORS278)" FT /note="KEGG: bra:BRADO0839 hypothetical protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSPRSTPRRPFAPLTRWLDALLDPKRQELTVIWTLLAYMAVWTAYRIIATWPRDLHADETELYGWSRHLALGTDKHPPFS FT AWVARAWFTLVPPSDLSVHLLATANIALTLYIAWRTMRRYMDAEKSLFGLALLTLIPFFNFIALKYNANAVLLPLWALTI FT HCFLRALESRAVLWGALAGVFAGASMLGKYWSIVLVVALGLAALIDPRRGRFFASPAPWLMILCGGLVLGPHVWWLADHG FT FPTLAYAAAHESADLADNLRDTLTYLPGAVAYAAVALITAAVVLRPSRAALADIAWPAGSERRTILLIQLLLIVAPMPVA FT LATGIRIVPLWAMPAYTLLPIVLLASPLIAVGRDAVRRCLIVASAVSLGSLALSPVVALVIHLSDPPGPFEYASLLADHV FT DREWRRNIDEPVPLVAGETVLAENTAFYLRTDTLGFETADLAALKQRAAARGAILVCPADDKGCIATAEQIIAGQPQILR FT GKVWLSRPLFGQPGGRVSDVFFLVLPTERSAK* " FT gene 376866..378404 FT /locus_tag="Rpal_0356" FT /colour=13 FT misc_feature order(376950..377009,377151..377207,377244..377297,377412..377480,377499..377567,377649..377717,377778..377840,377853..377921,377940..378008) FT /colour=11 FT /locus_tag="Rpal_0356" FT /note="9 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(378456..378788) FT /locus_tag="Rpal_0357" FT /product="Phosphotransferase system, phosphocarrier FT protein HPr" FT /note="TIGRFAM: phosphocarrier, HPr family" FT /note="PFAM: phosphocarrier HPr protein" FT /note="SPTR: HPrNtr - Nitrobacter hamburgensis (strain X14 FT / DSM 10229)" FT /note="KEGG: nha:Nham_0439 HPrNtr " FT /note="COGs: COG1925 Phosphotransferase system HPr-related FT protein category=G" FT /note="InterPro IPR000032:IPR001020:IPR005698" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MTIDAPQPGSGPDQASGASGDKISREIPVINKRGLHARASAKFVQMAERFNAEVWVTRNGETVGGTSIMGLMMLAAGIGT FT TVTVSASGPEARQALDAITELMGSKFGEEE* " FT gene complement(378456..378788) FT /locus_tag="Rpal_0357" FT /colour=4 FT CDS complement(378785..379186) FT /locus_tag="Rpal_0358" FT /product="PTS system fructose subfamily IIA component" FT /note="PFAM: PTS system fructose subfamily IIA component" FT /note="SPTR: PTS system fructose subfamily IIA component - FT Nitrobacter sp. Nb-311A" FT /note="KEGG: nha:Nham_0440 PTS system fructose subfamily FT IIA component " FT /note="COGs: COG2893 Phosphotransferase system FT mannose/fructose-specific component IIA category=G" FT /note="InterPro IPR004701" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MIGLVLVTHGRLADEFKAALEHVMGPQQQIEAVTIGAEDDADLCRSDIIEAVNRVDSGEGVAILTDMFGGTPSNLAISCM FT SRPKVEVLAGINLPMLVKLAKVREERSLPEAIALAQEAGRKYVTIASRVLAGK* " FT gene complement(378785..379186) FT /locus_tag="Rpal_0358" FT /colour=4 FT CDS complement(379374..379841) FT /locus_tag="Rpal_0359" FT /product="HPr kinase" FT /note="SPTR: HPr kinase - Nitrobacter hamburgensis (strain FT X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0441 HPr kinase " FT /note="COGs: COG1493 Serine kinase of the HPr protein FT regulates carbohydrate metabolism category=T" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MTEAMPRTVHASAVKVGDLAVVIRGPSGSGKSRLAWALILAGRAGQIPRAELIGDDRVFMEPEQGRLTVRQVPELAGLIE FT IRGLGVRQTASVAAATVGLVVDLGAADASRMPETAALRTEIGGVQLPRVPVAAGYDPLPLVAAALTTTGMAEEEA* FT " FT gene complement(379374..379841) FT /locus_tag="Rpal_0359" FT /colour=15 FT CDS complement(379838..381583) FT /locus_tag="Rpal_0360" FT /product="integral membrane sensor signal transduction FT histidine kinase" FT /note="PFAM: ATP-binding region ATPase domain protein; FT histidine kinase HAMP region domain protein; histidine FT kinase A domain protein" FT /note="SPTR: Sensor protein - Nitrobacter hamburgensis FT (strain X14 / DSM 10229)" FT /note="KEGG: nha:Nham_0442 periplasmic sensor signal FT transduction histidine kinase " FT /note="COGs: COG0642 Signal transduction histidine kinase FT category=T" FT /note="InterPro FT IPR003594:IPR003660:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="VRDETPVHGRRWPRPLDWVRRTGQFFFTLSFSSLTRRILSLNLAGLMALSASILYLSQFRAGLIDARAQSLLVQAEIIAG FT AIAASATVETNTITIDPDRLLDLKPGESYGPPDEYAVLDFPINPERVAPVLRRLISPTKTRARIYDRDGVLILDSRSLYG FT RGDVMRFELPPPTAEKPGIVERAMIAIRTWFNRGDLPLYRELGPENGNGYQEVAQSLKGQKSSMVRINDRGEVIVSVSVP FT VQRFRAIYGSLMLSTQGDDIDQMVTAERLAILKVFGVAAVVMFVLSVLLASTIAGPVRRLADAAERVRRRIRARVEIPDF FT TRRRDEIGHLSGALRDMTDSLYNRIEAIERFAADVSHELKNPLTSLRSAVETLPLAKTDNSRARLLSVIEHDVKRLDRLI FT SDISDASRLDAELQRQDAAQVDLRRLLTTLTLVANETRLGHNALVEVKFDGPAADQFPVPGHDSRLGQVISNLLSNAQSF FT SREGGKVRILCRRRKAEIEIIVEDEGPGIRDDALEKIFERFYTDRPHQGFGQNSGLGLSISKQIVEAHGGKIWAENRVGP FT RGEDGEPTIAGARFIVRLPAT* " FT gene complement(379838..381583) FT /locus_tag="Rpal_0360" FT /colour=15 FT misc_feature complement(order(380711..380776,381416..381481)) FT /colour=11 FT /locus_tag="Rpal_0360" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(381746..382447) FT /locus_tag="Rpal_0361" FT /product="two component transcriptional regulator, winged FT helix family" FT /note="PFAM: response regulator receiver; transcriptional FT regulator domain protein" FT /note="SPTR: Two-component response regulator - FT Bradyrhizobium japonicum" FT /note="KEGG: bja:blr8144 two-component response regulator FT " FT /note="COGs: COG0745 Response regulators consisting of a FT CheY-like receiver domain and a winged-helix DNA-binding FT domain category=T" FT /note="InterPro IPR001789:IPR001867" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTTPPDLAILDIKMPRMDGMETLRRLRQKSDLPVIFLTS FT KDEEIDELFGLKMGADDFIRKPFSQRLLVERVKAVLRRSAPKDPAAAPKENDAKALDRGPLRMDPERHTCTWKNEPVTLT FT VTEFLILQALATRPGVVKSRNALMDAAYDDQVYVDDRTIDSHIKRLRKKFKAVDDEFEMIETLYGVGYRFKEI* FT " FT gene complement(381746..382447) FT /locus_tag="Rpal_0361" FT /colour=15 FT CDS 382681..383415 FT /locus_tag="Rpal_0362" FT /product="pyridoxamine 5'-phosphate oxidase-related FT FMN-binding" FT /note="PFAM: pyridoxamine 5'-phosphate oxidase-related FT FMN-binding" FT /note="SPTR: Bll8143 protein - Bradyrhizobium japonicum" FT /note="KEGG: bja:bll8143 hypothetical protein " FT /note="COGs: COG0748 Putative heme iron utilization FT protein category=P" FT /note="InterPro IPR011576" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MQPTPDFSAPKLAKTLLRRRREGALATLMENGGAPYCSLVNLASHPDGSPLLLISRLAIHTRNVLADPRVSLMLDERSAG FT DPLEGARIMLAGRAVLARPDELPLWRRRYLAAHPAAEGYIDFADFSLFKIESSGLHLVAGFGRILDLSPDRYLTDLTGAE FT ALLEVEASAVEHINADHPDTMKLYATQLLGSGEADWRCTGIDPEGLDLQCERATLRLDFPSRVENSAALRDMLKRMADIA FT RKTE* " FT gene 382681..383415 FT /locus_tag="Rpal_0362" FT /colour=9 FT CDS 383604..385217 FT /locus_tag="Rpal_0363" FT /product="Phosphoenolpyruvate carboxykinase (ATP)" FT /EC_number="4.1.1.49" FT /note="PRIAM: Phosphoenolpyruvate carboxykinase (ATP)" FT /note="PFAM: phosphoenolpyruvate carboxykinase (ATP)" FT /note="SPTR: A5EST5 Phosphoenolpyruvate carboxykinase FT [ATP] (EC 4.1.1.49) (PEP carboxykinase) FT (Phosphoenolpyruvate carboxylase) (PEPCK). Bradyrhizobium FT sp. (strain BTAi1 / ATCC BAA-1182)." FT /note="KEGG: bbt:BBta_7365 phosphoenolpyruvate FT carboxykinase " FT /note="COGs: COG1866 Phosphoenolpyruvate carboxykinase FT (ATP) category=C" FT /note="InterPro IPR001272:IPR008210:IPR015994" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="VQETGVHNGAYGTDKFGLKNLKGVYWNFGAPQLYEHALKNGEAVLSSDGALVADTGVFTGRSPKDKFTVRDATTENTMWW FT GGNQSITAEQFETLYQDFLKHAEGMTLFAQDLYGGADPTFRIKTRVYTELAWHSLFIRTLLRRPERAELENFVPELTLID FT LPSFRADPKRHGCRSENVVAIDFARKIVLIGGTQYAGEMKKSVFTTLNYYLPEKGVLPMHCSANVGPNGDTAIFFGLSGT FT GKTTLSADPNRTLIGDDEHGWGKDGVFNFEGGCYAKCIKLSAENEPEIYAASTRFGAVLENVVLGEIDRKPDFDDGSKTE FT NTRSAYPLESIPNASLTGRAGQPKNVVMLAADAFGVMPPIAKLTPAQAMYHFLSGYTAKVAGTERGVTEPTPEFSTCFGS FT PFLPRDPSVYGNMLRELIAKHNVDCWLVNTGWTGGIYGTGHRMPIKVTRALLTAALDGSLRNVEFRTDPYFGFAVPTALP FT GVPSEILDPVKTWADKAAFDTTARKLVGMFQKNFAKFEAQVDAEVRAAAPDVKMAAE* FT " FT gene 383604..385217 FT /locus_tag="Rpal_0363" FT /colour=3 FT CDS 385465..388350 FT /locus_tag="Rpal_0364" FT /product="hypothetical protein" FT /note="SPTR: RNA binding S1 domain protein - Shewanella FT baltica OS195" FT /note="KEGG: sbn:Sbal195_0330 RNA binding S1 domain FT protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLVSLEVFFRKLLIERAEIDLVSIENLSDTLIQQSSITSLLQIKRTLNATTLADAIREAYEIAILADQCLDERIRFQIAC FT ELKETELSIYQLDASRIFRKGESFDVKQLSRTRALFDPNAPIVVIADPVLALYRTFWLAGVPDPASLATRCLGTLFKAFD FT GHHRENVEHALYDLIEVVKGATRNHHHNAGLGRILTATNFQIAQQPSLAREPLIGRRPRVADFVADRFKNRSGLLAGVER FT AANDWLSSLPIAPDDDDGILHIFWIEGRAGDGKSVLLLQLVSRLLSGKLSFITELANRKEIESWLRDVPVWDDVAKARGA FT FPSVAFIDDLHEKIEKDELESLVSEVFYRGTRTAAILTCGPSLDLSSFSESISRFRIKSFKVPSLSLSDREEFTAWYESR FT TGQLAKPVGESRSWLLVEWLLQISRGNLEHEFADNFRRSLERQGLLEIATTVAAVNTLSVGAPETLLTTVNERIGFDAVS FT SQGAQHFELRKDEDEVGLFLTHPALTWPLFRAWTKKDGVGLAAVWGARIGVALSHFLNADQPGAARFVLGQLLDAGTFRA FT RFQCKTFSEQIRLARTTLESAYETLEQRHALAAQAPVMALWLAAQKLQRLKAHSAVGLRALAATLLRSERHETRFRSEIA FT VALLSLNIVEDDAEKQAQTWLIENSECSQHVIGSLESLARKDEARLKFHFFMGWLRTRTTDARAFRVFVAAIERYPQTEA FT HAISLEFVRNNSGAEAGCVLLALARSGMDRQALGPAATLWINTTSDKRIVPKLLCLLLRQGVARLYRRSALRWLAANPGV FT PWVEEVIKLLLAHDPQEKLLVDAVELWLSLHKETMQAAQILRVLVKNRACRSRWLAAAKDHVLATQGPIRIPVLASLLSS FT IPSTEDVLLALDLIEADPTSSESRFLFSQLAIGVKKLSNEKIQRLRRQCRPECDQRLRRAIEWSPKGGASKRRSRQASPR FT N* " FT gene 385465..388350 FT /locus_tag="Rpal_0364" FT /colour=13 FT CDS complement(388605..389480) FT /locus_tag="Rpal_0365" FT /product="conserved hypothetical secreted protein" FT /note="SPTR: Conserved hypothetical secreted protein - FT Azoarcus sp. (strain BH72)" FT /note="KEGG: azo:azo3831 conserved hypothetical secreted FT protein " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRNTLLTSITSVLLAVAVSAGVAAAADGTIDNSALSKSEFRDHARTFGLVYTLPKNVNDVLDSTIRGPLKEKLLNAKLDT FT EAQMFNIPHVTVVHVHSADPATPEKMLAAMPKLPPVLTVKLKTFYTTEAAKGAGRPWWFDLGLVKEGKSFDDMMAFNTTA FT TAALTPLRDGPLPRCTGPVYAAMGDAAKDLVRTVGVSGVNVVKDGKELRSHNPHTTLVYSMAKFTPELQAQMNQAAKEFN FT QILPDGVDATFKTVSIVELGFAGNVLREVYRISLDDGSVTTIATGKTASLK* " FT gene complement(388605..389480) FT /locus_tag="Rpal_0365" FT /colour=13 FT misc_feature complement(389400..389465) FT /colour=11 FT /locus_tag="Rpal_0365" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(389403..389480) FT /colour=11 FT /locus_tag="Rpal_0365" FT /note="Signal predicted by SignalP 3.0 HMM (Signal peptide FT