Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 4 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 1 |
| Ser | 5 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 1 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig8 | 1 | 121051 ..121126 | 0..0 | 84.51 | 67.80 |
| Ala | GGC | Contig8 | 5 | 729941 ..730016 | 0..0 | 87.23 | 69.29 |
| Ala | TGC | Contig8 | 33 | 4824102..4824027 | 0..0 | 86.35 | 74.13 |
| Arg | ACG | Contig8 | 6 | 771267 ..771343 | 0..0 | 92.98 | 73.98 |
| Arg | CCG | Contig8 | 28 | 5262228..5262304 | 0..0 | 86.37 | 55.76 |
| Arg | CCT | Contig8 | 4 | 633139 ..633215 | 0..0 | 77.28 | 47.85 |
| Arg | TCG | Contig8 | 42 | 2715537..2715461 | 0..0 | 90.16 | 68.68 |
| Arg | TCT | Contig8 | 22 | 3334358..3334434 | 0..0 | 80.78 | 58.74 |
| Asn | GTT | Contig8 | 21 | 3297966..3298040 | 0..0 | 86.74 | 66.13 |
| Asp | GTC | Contig8 | 18 | 2953560..2953636 | 0..0 | 97.02 | 82.50 |
| Cys | GCA | Contig8 | 40 | 3299476..3299403 | 0..0 | 65.24 | 42.06 |
| Gln | CTG | Contig8 | 43 | 2372437..2372364 | 0..0 | 70.05 | 39.59 |
| Gln | TTG | Contig8 | 30 | 5041400..5041326 | 0..0 | 69.86 | 41.15 |
| Glu | CTC | Contig8 | 46 | 500117 ..500043 | 0..0 | 68.86 | 42.27 |
| Glu | TTC | Contig8 | 23 | 3354193..3354267 | 0..0 | 60.15 | 31.71 |
| Gly | CCC | Contig8 | 7 | 898097 ..898170 | 0..0 | 80.62 | 58.67 |
| Gly | GCC | Contig8 | 2 | 336013 ..336087 | 0..0 | 88.17 | 69.67 |
| Gly | TCC | Contig8 | 14 | 2603980..2604053 | 0..0 | 82.33 | 66.40 |
| Gly | TCC | Contig8 | 35 | 4479222..4479137 | 0..0 | 79.88 | 51.98 |
| His | GTG | Contig8 | 10 | 1661209..1661285 | 0..0 | 90.83 | 66.86 |
| Ile | GAT | Contig8 | 32 | 4824212..4824136 | 0..0 | 93.43 | 73.71 |
| Leu | CAA | Contig8 | 3 | 557873 ..557957 | 0..0 | 74.81 | 48.91 |
| Leu | CAG | Contig8 | 45 | 744394 ..744308 | 0..0 | 75.87 | 50.83 |
| Leu | GAG | Contig8 | 16 | 2726839..2726923 | 0..0 | 69.13 | 39.95 |
| Leu | TAA | Contig8 | 11 | 2420157..2420243 | 0..0 | 75.78 | 44.41 |
| Leu | TAG | Contig8 | 17 | 2939436..2939520 | 0..0 | 77.53 | 51.95 |
| Lys | CTT | Contig8 | 38 | 3805350..3805275 | 0..0 | 97.77 | 73.98 |
| Lys | TTT | Contig8 | 20 | 3263143..3263218 | 0..0 | 94.10 | 72.78 |
| Met | CAT | Contig8 | 34 | 4685912..4685836 | 0..0 | 89.01 | 76.46 |
| Met | CAT | Contig8 | 36 | 4456813..4456738 | 0..0 | 83.74 | 63.69 |
| Met | CAT | Contig8 | 37 | 4397177..4397101 | 0..0 | 83.88 | 55.32 |
| Phe | GAA | Contig8 | 31 | 4930158..4930083 | 0..0 | 88.73 | 66.87 |
| Pro | CGG | Contig8 | 9 | 1301820..1301896 | 0..0 | 86.36 | 60.13 |
| Pro | GGG | Contig8 | 19 | 3031532..3031609 | 0..0 | 79.64 | 51.96 |
| Pro | TGG | Contig8 | 39 | 3349985..3349909 | 0..0 | 82.68 | 58.13 |
| Pseudo | CGT | Contig8 | 48 | 351207 ..351131 | 0..0 | 31.16 | 30.22 |
| Ser | CGA | Contig8 | 49 | 278950 ..278861 | 0..0 | 76.06 | 44.47 |
| Ser | CGA | Contig8 | 50 | 242261 ..242172 | 0..0 | 76.06 | 44.47 |
| Ser | GCT | Contig8 | 24 | 3462484..3462577 | 0..0 | 76.24 | 47.13 |
| Ser | GGA | Contig8 | 8 | 1059854..1059943 | 0..0 | 81.68 | 52.08 |
| Ser | TGA | Contig8 | 25 | 3470486..3470575 | 0..0 | 78.48 | 46.07 |
| Thr | CGT | Contig8 | 47 | 354148 ..354073 | 0..0 | 97.39 | 74.93 |
| Thr | GGT | Contig8 | 27 | 4941426..4941500 | 0..0 | 86.11 | 64.95 |
| Thr | TGT | Contig8 | 12 | 2493652..2493726 | 0..0 | 83.07 | 58.45 |
| Trp | CCA | Contig8 | 15 | 2616419..2616494 | 0..0 | 91.15 | 66.67 |
| Tyr | GTA | Contig8 | 13 | 2496079..2496164 | 0..0 | 75.58 | 43.96 |
| Undet | ??? | Contig8 | 44 | 1711442..1711367 | 0..0 | 31.31 | 13.99 |
| Val | CAC | Contig8 | 26 | 4478622..4478696 | 0..0 | 81.20 | 58.80 |
| Val | GAC | Contig8 | 29 | 5102690..5102616 | 0..0 | 89.95 | 69.24 |
| Val | TAC | Contig8 | 41 | 2946570..2946494 | 0..0 | 92.05 | 64.77 |
tRNA Models
Contig8.trna1 (121051-121126) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (121084-121086) Score: 84.51
HMM Sc=67.80 Sec struct Sc=16.71
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna2 (336013-336087) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (336045-336047) Score: 88.17
HMM Sc=69.67 Sec struct Sc=18.50
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGAGGGTTCGAATCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna3 (557873-557957) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (557907-557909) Score: 74.81
HMM Sc=48.91 Sec struct Sc=25.90
* | * | * | * | * | * | * | * |
Seq: GCCCCTGTGGCGGAACTGGTaGACGCGCTCGACTCAAAATCGAGTTCCGCAAGGAGTGCTGGTTCGATCCCGGCCAGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig8.trna4 (633139-633215) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (633173-633175) Score: 77.28
HMM Sc=47.85 Sec struct Sc=29.43
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGCTCAGCCGGAtAGAGCGGCGGTTTCCTAAACCGTAGGtCGGATGTTCGAGTCATCCCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna5 (729941-730016) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (729974-729976) Score: 87.23
HMM Sc=69.29 Sec struct Sc=17.94
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna6 (771267-771343) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (771301-771303) Score: 92.98
HMM Sc=73.98 Sec struct Sc=19.00
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGGGtCAGAGGTTCGAATCCTTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna7 (898097-898170) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (898129-898131) Score: 80.62
HMM Sc=58.67 Sec struct Sc=21.95
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGTTCAATGGTAGAACGGCAGCTTCCCAAGCTGCATACGAGGGTTCGATTCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig8.trna8 (1059854-1059943) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (1059888-1059890) Score: 81.68
HMM Sc=52.08 Sec struct Sc=29.60
* | * | * | * | * | * | * | * | *
Seq: GGAGAGATGGCCGAGTGGCttAAGGCGCACGCTTGGAAAGCGTGTGTGCGGGAAACCGTACCGTGGGTTCGAATCCCACTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig8.trna9 (1301820-1301896) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (1301854-1301856) Score: 86.36
HMM Sc=60.13 Sec struct Sc=26.23
* | * | * | * | * | * | * | *
Seq: CGGAGTGTGGCTCAGCCcGGTAGAGCACTGCGTTCGGGACGCAGGGGtCGCAGGTTCGAATCCTGCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna10 (1661209-1661285) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (1661243-1661245) Score: 90.83
HMM Sc=66.86 Sec struct Sc=23.97
* | * | * | * | * | * | * | *
Seq: GCAGTTGTAGCTCAGTTGGTtAGAGCGCCTGTCTGTGGAACAGGAGGtCGGTGGTTCGAGCCCACCCAACTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna11 (2420157-2420243) Length: 87 bp
Type: Leu Anticodon: TAA at 35-37 (2420191-2420193) Score: 75.78
HMM Sc=44.41 Sec struct Sc=31.37
* | * | * | * | * | * | * | * | *
Seq: GCGGACGTGGCGAAACTGGTaGACGCAAGGGACTTAAAATCCCTCGATGGCAACGTCGTGCGGGTTCGACCCCCGCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig8.trna12 (2493652-2493726) Length: 75 bp
Type: Thr Anticodon: TGT at 33-35 (2493684-2493686) Score: 83.07
HMM Sc=58.45 Sec struct Sc=24.62
* | * | * | * | * | * | * |
Seq: GCCGGCGTAGCACAGCGGTAGTGCAGCGGTTTTGTAAACCGAAGGtCGGGAGTTCGATCCTCTCCGCCGGCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig8.trna13 (2496079-2496164) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (2496113-2496115) Score: 75.58
HMM Sc=43.96 Sec struct Sc=31.62
* | * | * | * | * | * | * | * | *
Seq: GGGGGAGTGtCCCGAGTGGCaAAGGGAGCTGACTGTAAATCAGCCGCCTTATGGCTtCGCAGGTTCGAGTCCTGCCTCCCCCACCA
Str: >>>>>>>...>>>..........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig8.trna14 (2603980-2604053) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (2604012-2604014) Score: 82.33
HMM Sc=66.40 Sec struct Sc=15.93
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna15 (2616419-2616494) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (2616452-2616454) Score: 91.15
HMM Sc=66.67 Sec struct Sc=24.48
* | * | * | * | * | * | * | *
Seq: AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGtCGCAGGTTCGAGCCCTGCCACTCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna16 (2726839-2726923) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (2726873-2726875) Score: 69.13
HMM Sc=39.95 Sec struct Sc=29.18
* | * | * | * | * | * | * | * |
Seq: GCGCTCGTGGCGGAATTGGTaGACGCGCTGCCTTGAGGTGGCAGTGAGTAAAATCGTGGGGGTTCGAGTCCCTCCGAGCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
Contig8.trna17 (2939436-2939520) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (2939470-2939472) Score: 77.53
HMM Sc=51.95 Sec struct Sc=25.58
* | * | * | * | * | * | * | * |
Seq: GCGGGCGTGGCGGAATTGGTaGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCGAGTCCCTCCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig8.trna18 (2953560-2953636) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2953594-2953596) Score: 97.02
HMM Sc=82.50 Sec struct Sc=14.52
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGCCCCGTCTCTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna19 (3031532-3031609) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (3031567-3031569) Score: 79.64
HMM Sc=51.96 Sec struct Sc=27.68
* | * | * | * | * | * | * | *
Seq: CGGAGCGTGGCGCAGCCcGGTtAGCGCACTAGTCTGGGAGACTAGGGGtCGAAGGTTCAAATCCTTTCGCTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna20 (3263143-3263218) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (3263176-3263178) Score: 94.10
HMM Sc=72.78 Sec struct Sc=21.32
* | * | * | * | * | * | * | *
Seq: GAGCGCGTAGCTCAGCCGGTAGAGCACGTGACTTTTAATCATGGGGtCGAGGGTTCGAGTCCCTCCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna21 (3297966-3298040) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (3297998-3298000) Score: 86.74
HMM Sc=66.13 Sec struct Sc=20.61
* | * | * | * | * | * | * |
Seq: TCCCTGGTAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTTGGtCGCTGGTTCGAATCCGGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna22 (3334358-3334434) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (3334392-3334394) Score: 80.78
HMM Sc=58.74 Sec struct Sc=22.04
* | * | * | * | * | * | * | *
Seq: GGTCCCATAGCTCAACTGGAtAGAGTAGCGGATTTCTACTCCGCGGGtTGCAGGTTCGAATCCTGCTGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna23 (3354193-3354267) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (3354226-3354228) Score: 60.15
HMM Sc=31.71 Sec struct Sc=28.44
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTATCGGTtAGGACGCCACCCTTTCACGGTGGAGAGAGCGGTTCGATTCCGCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig8.trna24 (3462484-3462577) Length: 94 bp
Type: Ser Anticodon: GCT at 35-37 (3462518-3462520) Score: 76.24
HMM Sc=47.13 Sec struct Sc=29.11
* | * | * | * | * | * | * | * | * |
Seq: GGAGACGTGGCCGAGTGGCtgAAGGCGGCGGTTTGCTAAACCGTTATAGGGTTGTAAAGCCCTATCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig8.trna25 (3470486-3470575) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (3470520-3470522) Score: 78.48
HMM Sc=46.07 Sec struct Sc=32.41
* | * | * | * | * | * | * | * | *
Seq: GGAAGGGTGGCCGAGCGGTttAAGGCACCGGTCTTGAAAACCGGCGTGCCCGCAAGGGTACCGTGGGTTCGAATCCCACCCCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig8.trna26 (4478622-4478696) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (4478654-4478656) Score: 81.20
HMM Sc=58.80 Sec struct Sc=22.40
* | * | * | * | * | * | * |
Seq: GGGCGCATAGCTCAGCGGGAGAGCGTTCCCTTCACACGGGAGAGGtCCAAGGTTCGATCCCTTGTGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna27 (4941426-4941500) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (4941458-4941460) Score: 86.11
HMM Sc=64.95 Sec struct Sc=21.16
* | * | * | * | * | * | * |
Seq: GCTGCCGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGTGAGTTCGATCCTCCCCGGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig8.trna28 (5262228-5262304) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (5262262-5262264) Score: 86.37
HMM Sc=55.76 Sec struct Sc=30.61
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAGGtCACACGTTCGAATCGTGTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna29 (5102690-5102616) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (5102658-5102656) Score: 89.95
HMM Sc=69.24 Sec struct Sc=20.71
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGGAGAGCACCTCGTTGACATCGAGGGGGtCACAGGTTCGATCCCTGTCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna30 (5041400-5041326) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (5041368-5041366) Score: 69.86
HMM Sc=41.15 Sec struct Sc=28.71
* | * | * | * | * | * | * |
Seq: TGGGGCGTAGCCAAGCGGTAAGGCAGGGGATTTTGATTCCCCCATgCGGAGGTTCGATCCCTCCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna31 (4930158-4930083) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (4930125-4930123) Score: 88.73
HMM Sc=66.87 Sec struct Sc=21.86
* | * | * | * | * | * | * | *
Seq: GCCCAGGTAGCTCAGTTGGTAGAGCATGCGACTGAAAATCGCAGTGtCGGTGGTTCGATCCCGCCCCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna32 (4824212-4824136) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4824178-4824176) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna33 (4824102-4824027) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (4824069-4824067) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig8.trna34 (4685912-4685836) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (4685878-4685876) Score: 89.01
HMM Sc=76.46 Sec struct Sc=12.55
* | * | * | * | * | * | * | *
Seq: GGCGGGGTAGCTCAGCTGGTtAGAGCACGGGAATCATAATCCTGGGGtCGGGGGTTCGAGTCCCTCTCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna35 (4479222-4479137) Length: 86 bp
Type: Gly Anticodon: TCC at 35-37 (4479188-4479186) Score: 79.88
HMM Sc=51.98 Sec struct Sc=27.90
* | * | * | * | * | * | * | * | *
Seq: GGGGGCGTGGCGAAACTGGTaAACGCAGTGGTCTTCCAAACCACTTCCGGCACGGAtTGCGGGTTCAAGTCCCGCCGCCCCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>...<<<...>>>>>.......<<<<<<<<<<<<....
Contig8.trna36 (4456813-4456738) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (4456780-4456778) Score: 83.74
HMM Sc=63.69 Sec struct Sc=20.05
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTtAGAGCCGGCCGCTCATAACGGTCTGGtTGCAGGTTCGAGTCCTGCCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna37 (4397177-4397101) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (4397143-4397141) Score: 83.88
HMM Sc=55.32 Sec struct Sc=28.56
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig8.trna38 (3805350-3805275) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (3805317-3805315) Score: 97.77
HMM Sc=73.98 Sec struct Sc=23.79
* | * | * | * | * | * | * | *
Seq: GGGCGCATAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGtCCCAGGTTCGAGCCCTGGTGCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna39 (3349985-3349909) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (3349951-3349949) Score: 82.68
HMM Sc=58.13 Sec struct Sc=24.55
* | * | * | * | * | * | * | *
Seq: CGGGGTATAGCGCAGCCtGGTAGCGCGGCAGTTTTGGGTACTGCAGGtCACAGGTTCGAATCCTGTTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna40 (3299476-3299403) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (3299444-3299442) Score: 65.24
HMM Sc=42.06 Sec struct Sc=23.18
* | * | * | * | * | * | * |
Seq: GGCCACGTGGCGGAGTGGTTACGCGCCGGTCTGCAAAACCGTTTACTCGGGTTCGATTCCCGACGTGGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna41 (2946570-2946494) Length: 77 bp
Type: Val Anticodon: TAC at 35-37 (2946536-2946534) Score: 92.05
HMM Sc=64.77 Sec struct Sc=27.28
* | * | * | * | * | * | * | *
Seq: GGGCGGCTAGCTCAGCTGGTtAGAGCATCTCGTTTACACCGAGAGGGtCGGGAGTTCGAATCTCTCGCCGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna42 (2715537-2715461) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (2715503-2715501) Score: 90.16
HMM Sc=68.68 Sec struct Sc=21.48
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGCATCGGATTTCGATTCCGAGGGtCGGAGGTTCGAATCCTTCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna43 (2372437-2372364) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (2372405-2372403) Score: 70.05
HMM Sc=39.59 Sec struct Sc=30.46
* | * | * | * | * | * | * |
Seq: TGGGGAATGGTGTAACGGTAGCACAACAGACTCTGACTCTGTTTGTCTAGGTTCGAATCCTAGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig8.trna44 (1711442-1711367) Length: 76 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 31.31
HMM Sc=13.99 Sec struct Sc=17.32
* | * | * | * | * | * | * | *
Seq: GGCCCGGTGGCGGAAGATcAACGCGGGGGCggTGCAACGCTCTTTTtTCCTGGTTCAAGTCCAGGCTGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>........<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna45 (744394-744308) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (744360-744358) Score: 75.87
HMM Sc=50.83 Sec struct Sc=25.04
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCTGGCTTCAGGTGCCAGTGGCTTCACGGCCGTGAAGGTTCGAGTCCTTTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig8.trna46 (500117-500043) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (500084-500082) Score: 68.86
HMM Sc=42.27 Sec struct Sc=26.59
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTAGCGGTtAGGACGCGGCCCTCTCAAGGCTGAAACAGGGGTTCGATTCCCCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig8.trna47 (354148-354073) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (354115-354113) Score: 97.39
HMM Sc=74.93 Sec struct Sc=22.46
* | * | * | * | * | * | * | *
Seq: GCCGCAATAGCTCAGCTGGTAGAGCACGTCATTCGTAATGACGGGGtCGGGGGTTCGAATCCCTCTTGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig8.trna48 (351207-351131) Length: 77 bp
Type: Thr Anticodon: CGT at 34-36 (351174-351172) Score: 31.16
Possible pseudogene: HMM Sc=30.22 Sec struct Sc=0.94
* | * | * | * | * | * | * | *
Seq: GCCGAAATAATGCACCTGCTAGAGCACGTCATTCGTACTGACtGGGGgTGGGGGTTCGAATCCCTCTTGCGGCACCT
Str: >>>>.>>...>.>........<.<..>>>>>.......<<<<.<.....>>>>>.......<<<<<<<.<<<<....
Contig8.trna49 (278950-278861) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (278916-278914) Score: 76.06
HMM Sc=44.47 Sec struct Sc=31.59
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCACCGCACTCGAAATGCGGCATAGGTGCAAGCCTATCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig8.trna50 (242261-242172) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (242227-242225) Score: 76.06
HMM Sc=44.47 Sec struct Sc=31.59
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCACCGCACTCGAAATGCGGCATAGGTGCAAGCCTATCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
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