Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 4 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 2 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 2 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 5 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 1 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig2 | 43 | 776886 ..776811 | 0..0 | 84.51 | 67.80 |
| Ala | GGC | Contig2 | 50 | 212295 ..212220 | 0..0 | 87.23 | 69.29 |
| Ala | TGC | Contig2 | 23 | 4550552..4550477 | 0..0 | 86.35 | 74.13 |
| Ala | TGC | Contig2 | 47 | 406881 ..406806 | 0..0 | 86.35 | 74.13 |
| Arg | ACG | Contig2 | 51 | 82028 ..81952 | 0..0 | 92.98 | 73.98 |
| Arg | CCG | Contig2 | 42 | 852530 ..852454 | 0..0 | 86.37 | 55.76 |
| Arg | CCT | Contig2 | 49 | 307635 ..307559 | 0..0 | 77.28 | 47.85 |
| Arg | TCG | Contig2 | 15 | 3446452..3446528 | 0..0 | 85.57 | 64.10 |
| Arg | TCT | Contig2 | 36 | 2850486..2850410 | 0..0 | 80.78 | 58.74 |
| Asn | GTT | Contig2 | 35 | 2886394..2886320 | 0..0 | 86.74 | 66.13 |
| Asp | GTC | Contig2 | 33 | 3216643..3216567 | 0..0 | 97.02 | 82.50 |
| Cys | GCA | Contig2 | 12 | 2884542..2884615 | 0..0 | 65.24 | 42.06 |
| Cys | GCA | Contig2 | 40 | 2566040..2565965 | 0..0 | 59.10 | 34.26 |
| Gln | CTG | Contig2 | 16 | 3701577..3701650 | 0..0 | 70.05 | 39.59 |
| Gln | TTG | Contig2 | 20 | 4760534..4760460 | 0..0 | 69.86 | 41.15 |
| Glu | CTC | Contig2 | 45 | 424443 ..424369 | 0..0 | 68.86 | 42.27 |
| Glu | TTC | Contig2 | 37 | 2829289..2829215 | 0..0 | 60.15 | 31.71 |
| Gly | CCC | Contig2 | 4 | 1026149..1026222 | 0..0 | 80.62 | 58.67 |
| Gly | GCC | Contig2 | 2 | 524502 ..524576 | 0..0 | 88.17 | 69.67 |
| Gly | TCC | Contig2 | 29 | 3563857..3563784 | 0..0 | 82.33 | 66.40 |
| His | GTG | Contig2 | 7 | 1620308..1620384 | 0..0 | 90.83 | 66.86 |
| Ile | GAT | Contig2 | 22 | 4550662..4550586 | 0..0 | 93.43 | 73.71 |
| Ile | GAT | Contig2 | 46 | 406991 ..406915 | 0..0 | 93.43 | 73.71 |
| Leu | CAA | Contig2 | 48 | 379530 ..379446 | 0..0 | 77.17 | 51.28 |
| Leu | CAG | Contig2 | 1 | 198196 ..198282 | 0..0 | 75.87 | 50.83 |
| Leu | GAG | Contig2 | 31 | 3428050..3427966 | 0..0 | 69.13 | 39.95 |
| Leu | TAA | Contig2 | 26 | 3647533..3647447 | 0..0 | 75.66 | 44.18 |
| Leu | TAG | Contig2 | 32 | 3226361..3226277 | 0..0 | 78.45 | 51.59 |
| Lys | CTT | Contig2 | 9 | 2369307..2369382 | 0..0 | 97.77 | 73.98 |
| Lys | TTT | Contig2 | 34 | 2922333..2922258 | 0..0 | 91.05 | 69.73 |
| Met | CAT | Contig2 | 24 | 4408007..4407931 | 0..0 | 89.01 | 76.46 |
| Met | CAT | Contig2 | 25 | 4091348..4091273 | 0..0 | 80.37 | 55.92 |
| Met | CAT | Contig2 | 8 | 1676578..1676654 | 0..0 | 83.88 | 55.32 |
| Phe | GAA | Contig2 | 21 | 4739339..4739264 | 0..0 | 88.73 | 66.87 |
| Pro | CGG | Contig2 | 6 | 1410553..1410629 | 0..0 | 85.24 | 59.01 |
| Pro | GGG | Contig2 | 13 | 3003929..3004006 | 0..0 | 79.64 | 51.96 |
| Pro | TGG | Contig2 | 11 | 2833690..2833766 | 0..0 | 79.83 | 55.97 |
| Ser | CGA | Contig2 | 10 | 2436981..2437051 | 0..0 | 34.65 | 20.79 |
| Ser | CGA | Contig2 | 3 | 663698 ..663787 | 0..0 | 76.06 | 44.47 |
| Ser | GCT | Contig2 | 38 | 2689902..2689809 | 0..0 | 76.24 | 47.13 |
| Ser | GGA | Contig2 | 5 | 1171800..1171889 | 0..0 | 81.68 | 52.08 |
| Ser | TGA | Contig2 | 39 | 2681606..2681517 | 0..0 | 83.46 | 49.96 |
| Thr | CGT | Contig2 | 44 | 537639 ..537564 | 0..0 | 97.39 | 74.93 |
| Thr | GGT | Contig2 | 18 | 4747188..4747262 | 0..0 | 86.11 | 64.95 |
| Thr | TGT | Contig2 | 27 | 3588522..3588448 | 0..0 | 83.07 | 58.45 |
| Trp | CCA | Contig2 | 30 | 3553806..3553731 | 0..0 | 91.15 | 66.67 |
| Tyr | GTA | Contig2 | 28 | 3585965..3585880 | 0..0 | 75.58 | 43.96 |
| Undet | ??? | Contig2 | 41 | 1630061..1629987 | 0..0 | 36.60 | 12.20 |
| Val | CAC | Contig2 | 17 | 4111391..4111465 | 0..0 | 81.20 | 58.80 |
| Val | GAC | Contig2 | 19 | 4820206..4820132 | 0..0 | 89.95 | 69.24 |
| Val | TAC | Contig2 | 14 | 3219206..3219282 | 0..0 | 92.05 | 64.77 |
tRNA Models
Contig2.trna1 (198196-198282) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (198230-198232) Score: 75.87
HMM Sc=50.83 Sec struct Sc=25.04
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCTGGCTTCAGGTGCCAGTGGCTTCACGGCCGTGAAGGTTCGAGTCCTTTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig2.trna2 (524502-524576) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (524534-524536) Score: 88.17
HMM Sc=69.67 Sec struct Sc=18.50
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGAGGGTTCGAATCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna3 (663698-663787) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (663732-663734) Score: 76.06
HMM Sc=44.47 Sec struct Sc=31.59
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCACCGCACTCGAAATGCGGCATAGGTGCAAGCCTATCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig2.trna4 (1026149-1026222) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (1026181-1026183) Score: 80.62
HMM Sc=58.67 Sec struct Sc=21.95
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGTTCAATGGTAGAACGGCAGCTTCCCAAGCTGCATACGAGGGTTCGATTCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig2.trna5 (1171800-1171889) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (1171834-1171836) Score: 81.68
HMM Sc=52.08 Sec struct Sc=29.60
* | * | * | * | * | * | * | * | *
Seq: GGAGAGATGGCCGAGTGGCttAAGGCGCACGCTTGGAAAGCGTGTGTGCGGGAAACCGTACCGTGGGTTCGAATCCCACTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig2.trna6 (1410553-1410629) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (1410587-1410589) Score: 85.24
HMM Sc=59.01 Sec struct Sc=26.23
* | * | * | * | * | * | * | *
Seq: CGGAGTGTGGCTCAGCCcGGTAGAGCACTGCGTTCGGGACGCAGGGGtCGCAGGTTCAAATCCTGCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna7 (1620308-1620384) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (1620342-1620344) Score: 90.83
HMM Sc=66.86 Sec struct Sc=23.97
* | * | * | * | * | * | * | *
Seq: GCAGTTGTAGCTCAGTTGGTtAGAGCGCCTGTCTGTGGAACAGGAGGtCGGTGGTTCGAGCCCACCCAACTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna8 (1676578-1676654) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1676612-1676614) Score: 83.88
HMM Sc=55.32 Sec struct Sc=28.56
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig2.trna9 (2369307-2369382) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2369340-2369342) Score: 97.77
HMM Sc=73.98 Sec struct Sc=23.79
* | * | * | * | * | * | * | *
Seq: GGGCGCATAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGtCCCAGGTTCGAGCCCTGGTGCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna10 (2436981-2437051) Length: 71 bp
Type: Ser Anticodon: CGA at 51-53 (2437031-2437033) Score: 34.65
HMM Sc=20.79 Sec struct Sc=13.86
* | * | * | * | * | * | * |
Seq: AGGCTGATAAATGGGACCCGGACTGACTCTTAATCAGCGGGtCCCAGGTTCGAGCCCTGGTGCGCCCACCA
Str: .>>>..>...............>>>>.......<<<<......>>>>>.......<<<<<<..<<<.....
Contig2.trna11 (2833690-2833766) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (2833724-2833726) Score: 79.83
HMM Sc=55.97 Sec struct Sc=23.86
* | * | * | * | * | * | * | *
Seq: CGGGGTATAGCGCAGCCtGGTAGCGCGGCAGTTTTGGGTACTGCAGGtCGTTGGTTCGAATCCAGCTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna12 (2884542-2884615) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (2884574-2884576) Score: 65.24
HMM Sc=42.06 Sec struct Sc=23.18
* | * | * | * | * | * | * |
Seq: GGCCACGTGGCGGAGTGGTTACGCGCCGGTCTGCAAAACCGTTTACTCGGGTTCGATTCCCGACGTGGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna13 (3003929-3004006) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (3003964-3003966) Score: 79.64
HMM Sc=51.96 Sec struct Sc=27.68
* | * | * | * | * | * | * | *
Seq: CGGAGCGTGGCGCAGCCcGGTtAGCGCACTAGTCTGGGAGACTAGGGGtCGAAGGTTCAAATCCTTTCGCTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna14 (3219206-3219282) Length: 77 bp
Type: Val Anticodon: TAC at 35-37 (3219240-3219242) Score: 92.05
HMM Sc=64.77 Sec struct Sc=27.28
* | * | * | * | * | * | * | *
Seq: GGGCGGCTAGCTCAGCTGGTtAGAGCATCTCGTTTACACCGAGAGGGtCGGGAGTTCGAATCTCTCGCCGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna15 (3446452-3446528) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (3446486-3446488) Score: 85.57
HMM Sc=64.10 Sec struct Sc=21.47
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGCATCGGATTTCGATTCCGAGGGcCGGAGGTTCGAATCCTTCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna16 (3701577-3701650) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (3701609-3701611) Score: 70.05
HMM Sc=39.59 Sec struct Sc=30.46
* | * | * | * | * | * | * |
Seq: TGGGGAATGGTGTAACGGTAGCACAACAGACTCTGACTCTGTTTGTCTAGGTTCGAATCCTAGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig2.trna17 (4111391-4111465) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (4111423-4111425) Score: 81.20
HMM Sc=58.80 Sec struct Sc=22.40
* | * | * | * | * | * | * |
Seq: GGGCGCATAGCTCAGCGGGAGAGCGTTCCCTTCACACGGGAGAGGtCCAAGGTTCGATCCCTTGTGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna18 (4747188-4747262) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (4747220-4747222) Score: 86.11
HMM Sc=64.95 Sec struct Sc=21.16
* | * | * | * | * | * | * |
Seq: GCTGCCGTAGCTCAGTGGTAGAGCACTCCCTTGGTAAGGGAGAGGtCGTGAGTTCGATCCTCCCCGGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig2.trna19 (4820206-4820132) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (4820174-4820172) Score: 89.95
HMM Sc=69.24 Sec struct Sc=20.71
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGGAGAGCACCTCGTTGACATCGAGGGGGtCACAGGTTCGATCCCTGTCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna20 (4760534-4760460) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (4760502-4760500) Score: 69.86
HMM Sc=41.15 Sec struct Sc=28.71
* | * | * | * | * | * | * |
Seq: TGGGGCGTAGCCAAGCGGTAAGGCAGGGGATTTTGATTCCCCCATgCGGAGGTTCGATCCCTCCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna21 (4739339-4739264) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (4739306-4739304) Score: 88.73
HMM Sc=66.87 Sec struct Sc=21.86
* | * | * | * | * | * | * | *
Seq: GCCCAGGTAGCTCAGTTGGTAGAGCATGCGACTGAAAATCGCAGTGtCGGTGGTTCGATCCCGCCCCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna22 (4550662-4550586) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4550628-4550626) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna23 (4550552-4550477) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (4550519-4550517) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig2.trna24 (4408007-4407931) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (4407973-4407971) Score: 89.01
HMM Sc=76.46 Sec struct Sc=12.55
* | * | * | * | * | * | * | *
Seq: GGCGGGGTAGCTCAGCTGGTtAGAGCACGGGAATCATAATCCTGGGGtCGGGGGTTCGAGTCCCTCTCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna25 (4091348-4091273) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (4091315-4091313) Score: 80.37
HMM Sc=55.92 Sec struct Sc=24.45
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTtAGAGCCGGCCGCTCATAACGGTCTGGtTCCTGGTTCGAGTCCAGGCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna26 (3647533-3647447) Length: 87 bp
Type: Leu Anticodon: TAA at 35-37 (3647499-3647497) Score: 75.66
HMM Sc=44.18 Sec struct Sc=31.48
* | * | * | * | * | * | * | * | *
Seq: GCGGACGTGGCGGAACTGGTaGACGCAAGGGACTTAAAATCCCTCGATGGCAACGTCGTGCGGGTTCGACCCCCGCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig2.trna27 (3588522-3588448) Length: 75 bp
Type: Thr Anticodon: TGT at 33-35 (3588490-3588488) Score: 83.07
HMM Sc=58.45 Sec struct Sc=24.62
* | * | * | * | * | * | * |
Seq: GCCGGCGTAGCACAGCGGTAGTGCAGCGGTTTTGTAAACCGAAGGtCGGGAGTTCGATCCTCTCCGCCGGCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig2.trna28 (3585965-3585880) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (3585931-3585929) Score: 75.58
HMM Sc=43.96 Sec struct Sc=31.62
* | * | * | * | * | * | * | * | *
Seq: GGGGGAGTGtCCCGAGTGGCaAAGGGAGCTGACTGTAAATCAGCCGCCTTATGGCTtCGCAGGTTCGAGTCCTGCCTCCCCCACCA
Str: >>>>>>>...>>>..........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig2.trna29 (3563857-3563784) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (3563825-3563823) Score: 82.33
HMM Sc=66.40 Sec struct Sc=15.93
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna30 (3553806-3553731) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (3553773-3553771) Score: 91.15
HMM Sc=66.67 Sec struct Sc=24.48
* | * | * | * | * | * | * | *
Seq: AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGtCGCAGGTTCGAGCCCTGCCACTCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna31 (3428050-3427966) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (3428016-3428014) Score: 69.13
HMM Sc=39.95 Sec struct Sc=29.18
* | * | * | * | * | * | * | * |
Seq: GCGCTCGTGGCGGAATTGGTaGACGCGCTGCCTTGAGGTGGCAGTGAGTAAAATCGTGGGGGTTCGAGTCCCTCCGAGCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
Contig2.trna32 (3226361-3226277) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (3226327-3226325) Score: 78.45
HMM Sc=51.59 Sec struct Sc=26.86
* | * | * | * | * | * | * | * |
Seq: GCGGGCGTGGCGGAACTGGTaGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTCGTGGGGGTTCGAGTCCCTCCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig2.trna33 (3216643-3216567) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3216609-3216607) Score: 97.02
HMM Sc=82.50 Sec struct Sc=14.52
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGCCCCGTCTCTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna34 (2922333-2922258) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (2922300-2922298) Score: 91.05
HMM Sc=69.73 Sec struct Sc=21.32
* | * | * | * | * | * | * | *
Seq: GAGCGCGTAGCTCAGACGGTAGAGCACGTGACTTTTAATCATGGGGtCGAGGGTTCGAGTCCCTCCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna35 (2886394-2886320) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (2886362-2886360) Score: 86.74
HMM Sc=66.13 Sec struct Sc=20.61
* | * | * | * | * | * | * |
Seq: TCCCTGGTAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTTGGtCGCTGGTTCGAATCCGGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna36 (2850486-2850410) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2850452-2850450) Score: 80.78
HMM Sc=58.74 Sec struct Sc=22.04
* | * | * | * | * | * | * | *
Seq: GGTCCCATAGCTCAACTGGAtAGAGTAGCGGATTTCTACTCCGCGGGtTGCAGGTTCGAATCCTGCTGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna37 (2829289-2829215) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (2829256-2829254) Score: 60.15
HMM Sc=31.71 Sec struct Sc=28.44
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTATCGGTtAGGACGCCACCCTTTCACGGTGGAGAGAGCGGTTCGATTCCGCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig2.trna38 (2689902-2689809) Length: 94 bp
Type: Ser Anticodon: GCT at 35-37 (2689868-2689866) Score: 76.24
HMM Sc=47.13 Sec struct Sc=29.11
* | * | * | * | * | * | * | * | * |
Seq: GGAGACGTGGCCGAGTGGCtgAAGGCGGCGGTTTGCTAAACCGTTATAGGGTTGTAAAGCCCTATCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig2.trna39 (2681606-2681517) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (2681572-2681570) Score: 83.46
HMM Sc=49.96 Sec struct Sc=33.50
* | * | * | * | * | * | * | * | *
Seq: GGAAGGGTGGCCGAGTGGTttAAGGCACCGGTCTTGAAAACCGGCGTGGGTGCAAGCCCACCGTGGGTTCGAATCCCACCCCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig2.trna40 (2566040-2565965) Length: 76 bp
Type: Cys Anticodon: GCA at 33-35 (2566008-2566006) Score: 59.10
HMM Sc=34.26 Sec struct Sc=24.84
* | * | * | * | * | * | * | *
Seq: GGCCCCGTGGCGGAGTGGATACGCAAAGGACTGCAAATCCTTGCAgCGCTGGTTCGAATCCAGCgCGGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<.<<<<<<<....
Contig2.trna41 (1630061-1629987) Length: 75 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 36.60
HMM Sc=12.20 Sec struct Sc=24.40
* | * | * | * | * | * | * |
Seq: GGCCCGGTGGCGGAATGTCAACGCGGGGGCagTGCATcGTCCCATATCCTGGTTCAAATCCAGGCCGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>........<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig2.trna42 (852530-852454) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (852496-852494) Score: 86.37
HMM Sc=55.76 Sec struct Sc=30.61
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAGGtCACACGTTCGAATCGTGTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna43 (776886-776811) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (776853-776851) Score: 84.51
HMM Sc=67.80 Sec struct Sc=16.71
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna44 (537639-537564) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (537606-537604) Score: 97.39
HMM Sc=74.93 Sec struct Sc=22.46
* | * | * | * | * | * | * | *
Seq: GCCGCAATAGCTCAGCTGGTAGAGCACGTCATTCGTAATGACGGGGtCGGGGGTTCGAATCCCTCTTGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna45 (424443-424369) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (424410-424408) Score: 68.86
HMM Sc=42.27 Sec struct Sc=26.59
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTAGCGGTtAGGACGCGGCCCTCTCAAGGCTGAAACAGGGGTTCGATTCCCCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig2.trna46 (406991-406915) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (406957-406955) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna47 (406881-406806) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (406848-406846) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig2.trna48 (379530-379446) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (379496-379494) Score: 77.17
HMM Sc=51.28 Sec struct Sc=25.89
* | * | * | * | * | * | * | * |
Seq: GCCCCTGTGGCGGAACTGGTaGACGCGCTCGACTCAAAATCGAGTTCCGCAAGGAGTGCTGGTTCGATTCCGGCCAGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig2.trna49 (307635-307559) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (307601-307599) Score: 77.28
HMM Sc=47.85 Sec struct Sc=29.43
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGCTCAGCCGGAtAGAGCGGCGGTTTCCTAAACCGTAGGtCGGATGTTCGAGTCATCCCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna50 (212295-212220) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (212262-212260) Score: 87.23
HMM Sc=69.29 Sec struct Sc=17.94
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna51 (82028-81952) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (81994-81992) Score: 92.98
HMM Sc=73.98 Sec struct Sc=19.00
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGGGtCAGAGGTTCGAATCCTTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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