Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-09-25
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig2	RNAmmer-1.2	rRNA	4547031	4547144	89.9	-	.	5s_rRNA	
 Contig2	RNAmmer-1.2	rRNA	403360	403473	89.9	-	.	5s_rRNA	
 Contig2	RNAmmer-1.2	rRNA	4547252	4550072	3332.7	-	.	23s_rRNA	
 Contig2	RNAmmer-1.2	rRNA	403581	406401	3332.7	-	.	23s_rRNA	
 Contig2	RNAmmer-1.2	rRNA	4550893	4552369	1943.6	-	.	16s_rRNA	
 Contig2	RNAmmer-1.2	rRNA	407222	408698	1943.6	-	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig2_4547031-4547144_DIR- /molecule=5s_rRNA /score=89.9
 TGGTGGTTCTAGCGAGGAGCCTGAACCCGTTCCCATCCCGAACACGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTTCGTCTTAAGACGCGGGAGAGTAGGTCGCTGCCAGGCC
 >rRNA_Contig2_403360-403473_DIR- /molecule=5s_rRNA /score=89.9
 TGGTGGTTCTAGCGAGGAGCCTGAACCCGTTCCCATCCCGAACACGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTTCGTCTTAAGACGCGGGAGAGTAGGTCGCTGCCAGGCC
 >rRNA_Contig2_4547252-4550072_DIR- /molecule=23s_rRNA /score=3332.7
 TCAAGTGCCTTAAGGGTGTTCGGTGGATGCCTAGGCGCTGAGAGGCGATGAAGGACGTGC
 TACGCTGCGATAAGCCACGGGGAGCTGCGAAGAAGCTTTGATCCGTGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGGTCTTGTTGTCCGCAAGGACAGCGAGAT
 TTTGGATTTCCGGTTATCAAGAGAAGGTATGAGACTCCTGAATACATAGGGGGTTTCAAG
 CGAACCCAGGGAACTGAAACATCTAAGTACCTGGAGGAAAGGACATCAACAGAGACTCCG
 TTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGGTACATCAAAGACAACCGGAACCAG
 TCAGGAAAGCTGGGCCTTAGAGGGTGATAGCCCCGTACGGGTAATGCGATGATGTATCCT
 TGAGTAAGGCGGGACACGTGAAATCCTGTCTGAACGTGGGGGGACCACCCTCCAAGCCTA
 AGTACTCCTCAGCGACCGATAGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGCACCCCG
 ACGAGGGGAGTGAAATAGTTCCTGAAACCGGACACTTACAAACAGACGGAGCCCAAGATA
 CGTTCTGGGTGACGTCGTACCTTTTGTATTATGGGCCAGCGACTTAATTTAACGAGCAAG
 CTTAAGCCGATAGGTGAAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTG
 GATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGTAACACTCAC
 TGGAGGACCGAACGGGTGCCTGTTGAAAAAGGCTCCGATGACTTGTGGTTAGGGGTGAAA
 GGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAAAGATATTTAGGTATCGCCTCGGA
 CGAATACCTCGGGGGGTAGAGCACTGGATGGGCTAGGGGGACTTACCGTCTTACCAAACC
 CAACCAAACTCCGAATACCCGAGAGTACTATCCGGGAGTCACACGGCGGGTGCTAACGTC
 CGTCGTGGAGAGGGAAACAACCCGGACCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTG
 GGAAAGGATGTGGGAATCCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTA
 AAGAAAGCGTAACAGCTCACTGGTCTAAATAAGGGTTCCTGCGCCGAAGATGTAACGGGG
 CTCAAGCCACGAGCCGAAGCTTAGGGTGTGATCCGCAAGGGTCACGCGGTAGCGGAGCGT
 TCTGTAAGCCTGCGAAGGGCGACCCGTGAGGGCGCCTGGAGGTATCAGAAGTGCGAATGC
 TGGCATGAGTAACGACAAACACTGTGAAAGACAGTGTCGCCGAAAGTCCAAGGGTTCCTG
 CGTAAAGTTAATCTTCGCAGGGTTAGCCGGTCCCTAAGGCGAGGCCGAAAGGCGTAGTCG
 ATGGGAATCACGTGAATATTCGTGAGCCAGTGGATGGTGACGAATCCCTTATGTTGTCCG
 ACCTTACTGGATTGGTCGGGCCTCGACGGGGTTCCAGGAAATAGCCTCCACATCAGACCG
 TACCCGAAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACGATGT
 TGAAGGAACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCTTCTGTTTGCGCA
 AGCAGGCAGGAGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCT
 GCGAAATCGCAAGATGACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGG
 AGGGGTGCAAGCTCTGAATTGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTA
 AGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGACTTCCC
 CGCTGTCTCCAACATCGACTCAGTGAAATTGAATTCCCCGTGAAGATGCGGGGTTCCTGC
 GGTCAGACGGAAAGACCCCGTGCACCTTTACTGTAGCTTTGCGCTGGTATTCGTGACTGT
 TTGTGTAGAATAGGTGGTAGGCTTTGAAGCCGGGGCGCCAGCTCTGGTGGAGCCGAAATG
 TGAAATACCACCCTAATGGTTATGGATATCTAACCGCGTCCCCTCATCGGGGTCCGGGAC
 AGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCG
 ACGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTACAATGGCATAAGCCTGCCTGA
 CTGCGAGACTAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGC
 GTGGATGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATAACAGGCTGATGACGCC
 CAAGAGTCCATATCGACGGCGTCGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGG
 CTGGAGAAGGTCCCAAGGGTTCGGCTGTTCGCCGATTAAAGTGGTACGTGAGCTGGGTTC
 AGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTTGGAATGTTGAGAGGATT
 TGCCCCTAGTACGAGAGGACCGGGGTGAACGTACCTCTGGTGGAGCTGTTGTCGCGCCAG
 CGGCAGTGCAGCATAGCTATGTACGGACGGGATAACCGCTGAAAGCATCTAAGCGGGAAA
 CCCACCTCAAAACGAGCATTCCCTTGAGAACCGTGGTAGACCACCACGTTGATAGGCCGG
 ATGTGGAAGTGCGGCAACGCATGTAGCTTACCGGTACTAATCGTTCGATTGGCTTGATTG
 C
 >rRNA_Contig2_403581-406401_DIR- /molecule=23s_rRNA /score=3332.7
 TCAAGTGCCTTAAGGGTGTTCGGTGGATGCCTAGGCGCTGAGAGGCGATGAAGGACGTGC
 TACGCTGCGATAAGCCACGGGGAGCTGCGAAGAAGCTTTGATCCGTGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGGTCTTGTTGTCCGCAAGGACAGCGAGAT
 TTTGGATTTCCGGTTATCAAGAGAAGGTATGAGACTCCTGAATACATAGGGGGTTTCAAG
 CGAACCCAGGGAACTGAAACATCTAAGTACCTGGAGGAAAGGACATCAACAGAGACTCCG
 TTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGGTACATCAAAGACAACCGGAACCAG
 TCAGGAAAGCTGGGCCTTAGAGGGTGATAGCCCCGTACGGGTAATGCGATGATGTATCCT
 TGAGTAAGGCGGGACACGTGAAATCCTGTCTGAACGTGGGGGGACCACCCTCCAAGCCTA
 AGTACTCCTCAGCGACCGATAGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGCACCCCG
 ACGAGGGGAGTGAAATAGTTCCTGAAACCGGACACTTACAAACAGACGGAGCCCAAGATA
 CGTTCTGGGTGACGTCGTACCTTTTGTATTATGGGCCAGCGACTTAATTTAACGAGCAAG
 CTTAAGCCGATAGGTGAAGGCGTAGCGAAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTG
 GATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAGGTTGAAGGTGAGGTAACACTCAC
 TGGAGGACCGAACGGGTGCCTGTTGAAAAAGGCTCCGATGACTTGTGGTTAGGGGTGAAA
 GGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAAAGATATTTAGGTATCGCCTCGGA
 CGAATACCTCGGGGGGTAGAGCACTGGATGGGCTAGGGGGACTTACCGTCTTACCAAACC
 CAACCAAACTCCGAATACCCGAGAGTACTATCCGGGAGTCACACGGCGGGTGCTAACGTC
 CGTCGTGGAGAGGGAAACAACCCGGACCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTG
 GGAAAGGATGTGGGAATCCCAAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTA
 AAGAAAGCGTAACAGCTCACTGGTCTAAATAAGGGTTCCTGCGCCGAAGATGTAACGGGG
 CTCAAGCCACGAGCCGAAGCTTAGGGTGTGATCCGCAAGGGTCACGCGGTAGCGGAGCGT
 TCTGTAAGCCTGCGAAGGGCGACCCGTGAGGGCGCCTGGAGGTATCAGAAGTGCGAATGC
 TGGCATGAGTAACGACAAACACTGTGAAAGACAGTGTCGCCGAAAGTCCAAGGGTTCCTG
 CGTAAAGTTAATCTTCGCAGGGTTAGCCGGTCCCTAAGGCGAGGCCGAAAGGCGTAGTCG
 ATGGGAATCACGTGAATATTCGTGAGCCAGTGGATGGTGACGAATCCCTTATGTTGTCCG
 ACCTTACTGGATTGGTCGGGCCTCGACGGGGTTCCAGGAAATAGCCTCCACATCAGACCG
 TACCCGAAACCGACACAGGTGGACTGGTAGAGTATACCAAGGCGCTTGAGAGAACGATGT
 TGAAGGAACTCGGCAATTTACCTCCGTAACTTCGGGATAAGGAGGCCTTCTGTTTGCGCA
 AGCAGGCAGGAGGGGCACAGACCAGGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCT
 GCGAAATCGCAAGATGACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGG
 AGGGGTGCAAGCTCTGAATTGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTA
 AGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGACTTCCC
 CGCTGTCTCCAACATCGACTCAGTGAAATTGAATTCCCCGTGAAGATGCGGGGTTCCTGC
 GGTCAGACGGAAAGACCCCGTGCACCTTTACTGTAGCTTTGCGCTGGTATTCGTGACTGT
 TTGTGTAGAATAGGTGGTAGGCTTTGAAGCCGGGGCGCCAGCTCTGGTGGAGCCGAAATG
 TGAAATACCACCCTAATGGTTATGGATATCTAACCGCGTCCCCTCATCGGGGTCCGGGAC
 AGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCG
 ACGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTACAATGGCATAAGCCTGCCTGA
 CTGCGAGACTAACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGC
 GTGGATGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATAACAGGCTGATGACGCC
 CAAGAGTCCATATCGACGGCGTCGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGG
 CTGGAGAAGGTCCCAAGGGTTCGGCTGTTCGCCGATTAAAGTGGTACGTGAGCTGGGTTC
 AGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTTGGAATGTTGAGAGGATT
 TGCCCCTAGTACGAGAGGACCGGGGTGAACGTACCTCTGGTGGAGCTGTTGTCGCGCCAG
 CGGCAGTGCAGCATAGCTATGTACGGACGGGATAACCGCTGAAAGCATCTAAGCGGGAAA
 CCCACCTCAAAACGAGCATTCCCTTGAGAACCGTGGTAGACCACCACGTTGATAGGCCGG
 ATGTGGAAGTGCGGCAACGCATGTAGCTTACCGGTACTAATCGTTCGATTGGCTTGATTG
 C
 >rRNA_Contig2_4550893-4552369_DIR- /molecule=16s_rRNA /score=1943.6
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCATAGCAATATGTCAGTGGCAGACGGGTGAGTAACGCGTGGGAACGTACCTTTTGGT
 TCGGAACAACTGAGGGAAACTTCAGCTAATACCGGATAAGCCCTTACGGGGAAAGATTTA
 TCGCCGAAAGATCGGCCCGCGTCTGATTAGCTAGTTGGTGTGGTAAAGGCGCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGA
 GGTGAAAGCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGAGGATCTTGAGTATGGG
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGCCCATAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCCAGGACCGGTCGCAGAGATGTGA
 CCTTCTCTTCGGAGCCTGGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCCTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGATGCTA
 AGGGGCGACCCTTCGCAAATCTCAAAAAACCGTCTCAGTTCGGATTGGAGTCTGCAACTC
 GACTCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTTCTACCTGAAGGCAGTGC
 GCTAACCCGCAAGGGAGGCAGCTGACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT
 >rRNA_Contig2_407222-408698_DIR- /molecule=16s_rRNA /score=1943.6
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCATAGCAATATGTCAGTGGCAGACGGGTGAGTAACGCGTGGGAACGTACCTTTTGGT
 TCGGAACAACTGAGGGAAACTTCAGCTAATACCGGATAAGCCCTTACGGGGAAAGATTTA
 TCGCCGAAAGATCGGCCCGCGTCTGATTAGCTAGTTGGTGTGGTAAAGGCGCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTCTTTAAGTCAGA
 GGTGAAAGCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGAGGATCTTGAGTATGGG
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGCCCATAACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCCAGGACCGGTCGCAGAGATGTGA
 CCTTCTCTTCGGAGCCTGGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCCTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGATGCTA
 AGGGGCGACCCTTCGCAAATCTCAAAAAACCGTCTCAGTTCGGATTGGAGTCTGCAACTC
 GACTCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTTCTACCTGAAGGCAGTGC
 GCTAACCCGCAAGGGAGGCAGCTGACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT