Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 4 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 2 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 1 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 1 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig16 | 50 | 65372 ..65297 | 0..0 | 84.51 | 67.80 |
| Ala | GGC | Contig16 | 2 | 435624 ..435699 | 0..0 | 87.23 | 69.29 |
| Ala | TGC | Contig16 | 11 | 1458527..1458602 | 0..0 | 86.35 | 74.13 |
| Ala | TGC | Contig16 | 30 | 4765913..4765838 | 0..0 | 86.35 | 74.13 |
| Arg | ACG | Contig16 | 7 | 904030 ..904106 | 0..0 | 89.50 | 67.02 |
| Arg | CCG | Contig16 | 25 | 5178054..5178130 | 0..0 | 84.31 | 49.50 |
| Arg | CCT | Contig16 | 3 | 604164 ..604240 | 0..0 | 77.28 | 47.85 |
| Arg | TCG | Contig16 | 19 | 3716844..3716920 | 0..0 | 84.92 | 61.17 |
| Arg | TCT | Contig16 | 44 | 2750204..2750128 | 0..0 | 81.96 | 60.67 |
| Asn | GTT | Contig16 | 43 | 2785358..2785284 | 0..0 | 86.74 | 66.13 |
| Asp | GTC | Contig16 | 13 | 2603261..2603337 | 0..0 | 97.02 | 82.50 |
| Cys | GCA | Contig16 | 14 | 2783459..2783532 | 0..0 | 66.18 | 43.01 |
| Gln | CTG | Contig16 | 20 | 4061623..4061696 | 0..0 | 70.05 | 39.59 |
| Gln | TTG | Contig16 | 9 | 1260373..1260447 | 0..0 | 69.60 | 40.89 |
| Glu | CTC | Contig16 | 4 | 659625 ..659699 | 0..0 | 67.24 | 36.34 |
| Glu | TTC | Contig16 | 16 | 3035737..3035811 | 0..0 | 60.15 | 31.71 |
| Gly | CCC | Contig16 | 26 | 5467647..5467574 | 0..0 | 80.62 | 58.67 |
| Gly | GCC | Contig16 | 48 | 281680 ..281606 | 0..0 | 91.07 | 71.41 |
| Gly | TCC | Contig16 | 35 | 4028189..4028116 | 0..0 | 82.33 | 66.40 |
| His | GTG | Contig16 | 32 | 4388343..4388267 | 0..0 | 90.83 | 66.86 |
| Ile | GAT | Contig16 | 10 | 1458308..1458384 | 0..0 | 93.43 | 73.71 |
| Ile | GAT | Contig16 | 29 | 4766155..4766079 | 0..0 | 93.43 | 73.71 |
| Leu | CAA | Contig16 | 5 | 676742 ..676826 | 0..0 | 77.17 | 51.28 |
| Leu | CAG | Contig16 | 47 | 471086 ..471000 | 0..0 | 75.87 | 50.83 |
| Leu | GAG | Contig16 | 37 | 3703113..3703029 | 0..0 | 69.13 | 39.95 |
| Leu | TAA | Contig16 | 39 | 3494609..3494523 | 0..0 | 81.20 | 49.73 |
| Leu | TAG | Contig16 | 12 | 2593815..2593899 | 0..0 | 77.53 | 51.95 |
| Lys | CTT | Contig16 | 38 | 3576780..3576705 | 0..0 | 96.03 | 70.70 |
| Lys | TTT | Contig16 | 42 | 2825601..2825526 | 0..0 | 91.05 | 69.73 |
| Met | CAT | Contig16 | 31 | 4697742..4697667 | 0..0 | 83.74 | 63.69 |
| Met | CAT | Contig16 | 33 | 4214686..4214610 | 0..0 | 83.88 | 55.32 |
| Met | CAT | Contig16 | 8 | 1082975..1083051 | 0..0 | 89.01 | 76.46 |
| Phe | GAA | Contig16 | 28 | 4920899..4920824 | 0..0 | 88.73 | 66.87 |
| Pro | CGG | Contig16 | 23 | 4806829..4806905 | 0..0 | 86.36 | 60.13 |
| Pro | GGG | Contig16 | 15 | 2907932..2908009 | 0..0 | 81.00 | 53.32 |
| Pro | TGG | Contig16 | 41 | 3029721..3029645 | 0..0 | 79.93 | 51.72 |
| Pseudo | ??? | Contig16 | 46 | 1685651..1685576 | 0..0 | 26.13 | 9.04 |
| Ser | CGA | Contig16 | 49 | 168745 ..168656 | 0..0 | 76.06 | 44.47 |
| Ser | GCT | Contig16 | 17 | 3147536..3147629 | 0..0 | 73.97 | 47.48 |
| Ser | GGA | Contig16 | 27 | 5047782..5047693 | 0..0 | 81.68 | 52.08 |
| Ser | TGA | Contig16 | 40 | 3213182..3213093 | 0..0 | 77.51 | 42.09 |
| Thr | CGT | Contig16 | 1 | 58307 ..58382 | 0..0 | 97.39 | 74.93 |
| Thr | GGT | Contig16 | 24 | 4930951..4931025 | 0..0 | 82.23 | 54.79 |
| Thr | TGT | Contig16 | 18 | 3445449..3445523 | 0..0 | 85.93 | 65.21 |
| Trp | CCA | Contig16 | 36 | 3857845..3857770 | 0..0 | 89.52 | 63.77 |
| Tyr | GTA | Contig16 | 34 | 4049137..4049052 | 0..0 | 70.86 | 41.58 |
| Undet | ??? | Contig16 | 21 | 4264213..4264287 | 0..0 | 43.61 | 15.19 |
| Val | CAC | Contig16 | 22 | 4734382..4734456 | 0..0 | 81.20 | 58.80 |
| Val | GAC | Contig16 | 6 | 867054 ..867128 | 0..0 | 89.95 | 69.24 |
| Val | TAC | Contig16 | 45 | 2600975..2600901 | 0..0 | 82.22 | 63.24 |
tRNA Models
Contig16.trna1 (58307-58382) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (58340-58342) Score: 97.39
HMM Sc=74.93 Sec struct Sc=22.46
* | * | * | * | * | * | * | *
Seq: GCCGCAATAGCTCAGCTGGTAGAGCACGTCATTCGTAATGACGGGGtCGGGGGTTCGAATCCCTCTTGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna2 (435624-435699) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (435657-435659) Score: 87.23
HMM Sc=69.29 Sec struct Sc=17.94
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna3 (604164-604240) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (604198-604200) Score: 77.28
HMM Sc=47.85 Sec struct Sc=29.43
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGCTCAGCCGGAtAGAGCGGCGGTTTCCTAAACCGTAGGtCGGATGTTCGAGTCATCCCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna4 (659625-659699) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (659658-659660) Score: 67.24
HMM Sc=36.34 Sec struct Sc=30.90
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTAGCGGTtAGGACGTCGCCCTCTCACGGCGAAAACAGGAGTTCGATTCTCCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig16.trna5 (676742-676826) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (676776-676778) Score: 77.17
HMM Sc=51.28 Sec struct Sc=25.89
* | * | * | * | * | * | * | * |
Seq: GCCCCTGTGGCGGAACTGGTaGACGCGCTCGACTCAAAATCGAGTTCCGCAAGGAGTGCTGGTTCGATTCCGGCCAGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig16.trna6 (867054-867128) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (867086-867088) Score: 89.95
HMM Sc=69.24 Sec struct Sc=20.71
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGGAGAGCACCTCGTTGACATCGAGGGGGtCACAGGTTCGATCCCTGTCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna7 (904030-904106) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (904064-904066) Score: 89.50
HMM Sc=67.02 Sec struct Sc=22.48
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCACTAGACTACGAATCTAGGGGtCAGGAGTTCGAATCTCTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna8 (1082975-1083051) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1083009-1083011) Score: 89.01
HMM Sc=76.46 Sec struct Sc=12.55
* | * | * | * | * | * | * | *
Seq: GGCGGGGTAGCTCAGCTGGTtAGAGCACGGGAATCATAATCCTGGGGtCGGGGGTTCGAGTCCCTCTCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna9 (1260373-1260447) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (1260405-1260407) Score: 69.60
HMM Sc=40.89 Sec struct Sc=28.71
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGCCAAGTGGTAAGGCAGGGGATTTTGATTCCCCCATgCGGAGGTTCGAATCCTCCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna10 (1458308-1458384) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (1458342-1458344) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna11 (1458527-1458602) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (1458560-1458562) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig16.trna12 (2593815-2593899) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (2593849-2593851) Score: 77.53
HMM Sc=51.95 Sec struct Sc=25.58
* | * | * | * | * | * | * | * |
Seq: GCGGGCGTGGCGGAATTGGTaGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCGAGTCCCTCCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig16.trna13 (2603261-2603337) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2603295-2603297) Score: 97.02
HMM Sc=82.50 Sec struct Sc=14.52
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGCCCCGTCTCTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna14 (2783459-2783532) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (2783491-2783493) Score: 66.18
HMM Sc=43.01 Sec struct Sc=23.17
* | * | * | * | * | * | * |
Seq: GGCCACGTGGCGGAGTGGTTACGCGCCGGTCTGCAAAACCGTTTACTCGGGTTCGAGTCCCGACGTGGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna15 (2907932-2908009) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (2907967-2907969) Score: 81.00
HMM Sc=53.32 Sec struct Sc=27.68
* | * | * | * | * | * | * | *
Seq: CGGAGCGTAGCGCAGCCcGGTtAGCGCACTAGTCTGGGAGACTAGGGGtCGAAGGTTCAAATCCTTTCGCTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna16 (3035737-3035811) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (3035770-3035772) Score: 60.15
HMM Sc=31.71 Sec struct Sc=28.44
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTATCGGTtAGGACGCCACCCTTTCACGGTGGAGAGAGCGGTTCGATTCCGCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig16.trna17 (3147536-3147629) Length: 94 bp
Type: Ser Anticodon: GCT at 35-37 (3147570-3147572) Score: 73.97
HMM Sc=47.48 Sec struct Sc=26.49
* | * | * | * | * | * | * | * | * |
Seq: GGAGATGTGGCCGAGTGGCtgAAGGCGGCGGTTTGCTAAACCGTTATAGGGTTGTAAAGCCCTATCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig16.trna18 (3445449-3445523) Length: 75 bp
Type: Thr Anticodon: TGT at 33-35 (3445481-3445483) Score: 85.93
HMM Sc=65.21 Sec struct Sc=20.72
* | * | * | * | * | * | * |
Seq: GCCGGTTTAGCTCAGCGGTAGAGCAGCGGTTTTGTAAACCGAAGGtCGGGAGTTCAATCCTCTCAACCGGCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig16.trna19 (3716844-3716920) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (3716878-3716880) Score: 84.92
HMM Sc=61.17 Sec struct Sc=23.75
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGCATCGGATTTCGATTCCGAGGGcCGGGAGTTCGAATCTCTCCGAGCGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna20 (4061623-4061696) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (4061655-4061657) Score: 70.05
HMM Sc=39.59 Sec struct Sc=30.46
* | * | * | * | * | * | * |
Seq: TGGGGAATGGTGTAACGGTAGCACAACAGACTCTGACTCTGTTTGTCTAGGTTCGAATCCTAGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig16.trna21 (4264213-4264287) Length: 75 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 43.61
HMM Sc=15.19 Sec struct Sc=28.42
* | * | * | * | * | * | * |
Seq: GGCCCGGTGGCGGAAGATcAACGCAGGAGCCgTGCAACGCTCCTTATCCTGGTTCAAGTCCAGGCCGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>........<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig16.trna22 (4734382-4734456) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (4734414-4734416) Score: 81.20
HMM Sc=58.80 Sec struct Sc=22.40
* | * | * | * | * | * | * |
Seq: GGGCGCATAGCTCAGCGGGAGAGCGTTCCCTTCACACGGGAGAGGtCCAAGGTTCGATCCCTTGTGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna23 (4806829-4806905) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (4806863-4806865) Score: 86.36
HMM Sc=60.13 Sec struct Sc=26.23
* | * | * | * | * | * | * | *
Seq: CGGAGTGTGGCTCAGCCcGGTAGAGCACTGCGTTCGGGACGCAGGGGtCGCAGGTTCGAATCCTGCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna24 (4930951-4931025) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (4930983-4930985) Score: 82.23
HMM Sc=54.79 Sec struct Sc=27.44
* | * | * | * | * | * | * |
Seq: GCTGCCGTAGCTCAGTGGTAGAGCACTCCATTGGTAATGGAGAGGtCCACAGTTCGACCCTGTGTGGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna25 (5178054-5178130) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (5178088-5178090) Score: 84.31
HMM Sc=49.50 Sec struct Sc=34.81
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAGGtCTCGCGTTCGAATCGCGACGGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna26 (5467647-5467574) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (5467615-5467613) Score: 80.62
HMM Sc=58.67 Sec struct Sc=21.95
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGTTCAATGGTAGAACGGCAGCTTCCCAAGCTGCATACGAGGGTTCGATTCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig16.trna27 (5047782-5047693) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (5047748-5047746) Score: 81.68
HMM Sc=52.08 Sec struct Sc=29.60
* | * | * | * | * | * | * | * | *
Seq: GGAGAGATGGCCGAGTGGCttAAGGCGCACGCTTGGAAAGCGTGTGTGCGGGAAACCGTACCGTGGGTTCGAATCCCACTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig16.trna28 (4920899-4920824) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (4920866-4920864) Score: 88.73
HMM Sc=66.87 Sec struct Sc=21.86
* | * | * | * | * | * | * | *
Seq: GCCCAGGTAGCTCAGTTGGTAGAGCATGCGACTGAAAATCGCAGTGtCGGTGGTTCGATCCCGCCCCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna29 (4766155-4766079) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4766121-4766119) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna30 (4765913-4765838) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (4765880-4765878) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig16.trna31 (4697742-4697667) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (4697709-4697707) Score: 83.74
HMM Sc=63.69 Sec struct Sc=20.05
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTtAGAGCCGGCCGCTCATAACGGTCTGGtTGCAGGTTCGAGTCCTGCCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna32 (4388343-4388267) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (4388309-4388307) Score: 90.83
HMM Sc=66.86 Sec struct Sc=23.97
* | * | * | * | * | * | * | *
Seq: GCAGTTGTAGCTCAGTTGGTtAGAGCGCCTGTCTGTGGAACAGGAGGtCGGTGGTTCGAGCCCACCCAACTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna33 (4214686-4214610) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (4214652-4214650) Score: 83.88
HMM Sc=55.32 Sec struct Sc=28.56
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig16.trna34 (4049137-4049052) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (4049103-4049101) Score: 70.86
HMM Sc=41.58 Sec struct Sc=29.28
* | * | * | * | * | * | * | * | *
Seq: GGGGGAGTGtCCCGAGTGGCaAAGGGAGCTGACTGTAAATCAGCCGTCTTATGACTtCGAAGGTTCGAGTCCTTCTTCCCCCACCA
Str: >>>>>>>...>>>..........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig16.trna35 (4028189-4028116) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (4028157-4028155) Score: 82.33
HMM Sc=66.40 Sec struct Sc=15.93
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna36 (3857845-3857770) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (3857812-3857810) Score: 89.52
HMM Sc=63.77 Sec struct Sc=25.75
* | * | * | * | * | * | * | *
Seq: AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGtCGTAGGTTCGAGCCCTACCACTCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna37 (3703113-3703029) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (3703079-3703077) Score: 69.13
HMM Sc=39.95 Sec struct Sc=29.18
* | * | * | * | * | * | * | * |
Seq: GCGCTCGTGGCGGAATTGGTaGACGCGCTGCCTTGAGGTGGCAGTGAGTAAAATCGTGGGGGTTCGAGTCCCTCCGAGCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
Contig16.trna38 (3576780-3576705) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (3576747-3576745) Score: 96.03
HMM Sc=70.70 Sec struct Sc=25.33
* | * | * | * | * | * | * | *
Seq: GGGCGCATAGCTCAGTTGGTAGAGCAGATGACTCTTAATCATCGGGtCCCAGGTTCGAGCCCTGGTGCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna39 (3494609-3494523) Length: 87 bp
Type: Leu Anticodon: TAA at 35-37 (3494575-3494573) Score: 81.20
HMM Sc=49.73 Sec struct Sc=31.47
* | * | * | * | * | * | * | * | *
Seq: GCGGACGTGGCGGAATTGGTaGACGCAAGGGACTTAAAATCCCTCGATGGCAACGTCGTGCGGGTTCGATTCCCGCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig16.trna40 (3213182-3213093) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (3213148-3213146) Score: 77.51
HMM Sc=42.09 Sec struct Sc=35.42
* | * | * | * | * | * | * | * | *
Seq: GGAAGGGTGGCCGAGTGGTttAAGGCAGCGGTCTTGAAAACCGCCGTGCCTGCAAGGGTACCGTGGGTTCGAATCCCACCCCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig16.trna41 (3029721-3029645) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (3029687-3029685) Score: 79.93
HMM Sc=51.72 Sec struct Sc=28.21
* | * | * | * | * | * | * | *
Seq: CGGGGTATAGCGCAGCCtGGTAGCGCGGCAGTTTTGGGTACTGCAGGtCCACGGTTCGAATCCGTGTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna42 (2825601-2825526) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (2825568-2825566) Score: 91.05
HMM Sc=69.73 Sec struct Sc=21.32
* | * | * | * | * | * | * | *
Seq: GAGCGCGTAGCTCAGACGGTAGAGCACGTGACTTTTAATCATGGGGtCGAGGGTTCGAGTCCCTCCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna43 (2785358-2785284) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (2785326-2785324) Score: 86.74
HMM Sc=66.13 Sec struct Sc=20.61
* | * | * | * | * | * | * |
Seq: TCCCTGGTAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTTGGtCGCTGGTTCGAATCCGGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna44 (2750204-2750128) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2750170-2750168) Score: 81.96
HMM Sc=60.67 Sec struct Sc=21.29
* | * | * | * | * | * | * | *
Seq: GGTCCCATAGCTCAACTGGAtAGAGTAACGGATTTCTACTCCGTGGGtTGCAGGTTCGAATCCTGCTGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna45 (2600975-2600901) Length: 75 bp
Type: Val Anticodon: TAC at 33-35 (2600943-2600941) Score: 82.22
HMM Sc=63.24 Sec struct Sc=18.98
* | * | * | * | * | * | * |
Seq: GGGCGGTTAGCTCAGCGGTAGAGCATTCCCTTTACACGGGACAGGtCGGCGGTTCGATCCCGTCACCGCCTACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig16.trna46 (1685651-1685576) Length: 76 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 26.13
Possible pseudogene: HMM Sc=9.04 Sec struct Sc=17.09
* | * | * | * | * | * | * | *
Seq: TCAGGGATCGTCTAAAGGTAGGACACCcgCCCCTACAAGGGtGGAGATGTCGGCCCGAGTCCGGCTCCCTGAACCA
Str: >>>>>>>..>>>>.......<<<<.>>..>>>......<<<.<<....>>>>>.......<<<<<<<<<<<<....
Contig16.trna47 (471086-471000) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (471052-471050) Score: 75.87
HMM Sc=50.83 Sec struct Sc=25.04
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCTGGCTTCAGGTGCCAGTGGCTTCACGGCCGTGAAGGTTCGAGTCCTTTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig16.trna48 (281680-281606) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (281648-281646) Score: 91.07
HMM Sc=71.41 Sec struct Sc=19.66
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGAGGGTTCGAATCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig16.trna49 (168745-168656) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (168711-168709) Score: 76.06
HMM Sc=44.47 Sec struct Sc=31.59
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCACCGCACTCGAAATGCGGCATAGGTGCAAGCCTATCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig16.trna50 (65372-65297) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (65339-65337) Score: 84.51
HMM Sc=67.80 Sec struct Sc=16.71
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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