Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-09-25
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig16	RNAmmer-1.2	rRNA	1462102	1462215	92.1	+	.	5s_rRNA	
 Contig16	RNAmmer-1.2	rRNA	4762169	4762282	92.1	-	.	5s_rRNA	
 Contig16	RNAmmer-1.2	rRNA	1459092	1461935	3298.9	+	.	23s_rRNA	
 Contig16	RNAmmer-1.2	rRNA	4762449	4765292	3299.4	-	.	23s_rRNA	
 Contig16	RNAmmer-1.2	rRNA	1456600	1458076	1944.3	+	.	16s_rRNA	
 Contig16	RNAmmer-1.2	rRNA	4766381	4767857	1944.3	-	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig16_1462102-1462215_DIR+ /molecule=5s_rRNA /score=92.1
 TGGTGGTTCTAGCGAGGAGCTTGAACCCGATCCCATCCCGAACTCGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTATGGCTTAAGCCCTGGGAGAGTAGGTCGCTGCCAGGCC
 >rRNA_Contig16_4762169-4762282_DIR- /molecule=5s_rRNA /score=92.1
 TGGTGGTTCTAGCGAGGAGCTTGAACCCGATCCCATCCCGAACTCGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTATGGCTTAAGCCCTGGGAGAGTAGGTCGCTGCCAGGCC
 >rRNA_Contig16_1459092-1461935_DIR+ /molecule=23s_rRNA /score=3298.9
 TCAAGTGCCTTAAGGGTGTTCGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGC
 TACGCTGCGATAAGCCGTGGGGAGCTGCGAAGAAGCTTTGATCCACGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGTCCTTGTGACTTGGGGCTCAAACAGAAA
 TGGATGACTTCCAAGCCGTGAGGTTTTGGATTTCCGGTTATCAAGCGAAGGTATGAAGCT
 CCTGAATTCATAGGGGGTTTTAAGCGAACCCAGGGAACTGAAACATCTAAGTACCTGGAG
 GAAAGGACATCAACAGAGACTCCGTTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGA
 TACATCAAAGACAACCGGAACCTGTCAGGAAAGCAGGGCCTTAGAGGGTGATAGCCCCGT
 ACGGGTAATGCGATGATGTATCCATGAGTAAGGCGGGACACGTGTAATCCTGTCTGAACG
 TGGGGGGACCACCCTCCAAGCCTAAGTACTCCTCAGCGACCGATAGTGAACCAGTACCGT
 GAGGGAAAGGTGAAAAGCACCCCGACGAGGGGAGTGAAATAGACCTGAAACCGGACACCT
 ACAAACAGATGGAGCCCAAGATACGTTCTGGGTGACATCGTACCTTTTGTATTATGGGCC
 AGCGACTTAATTTAACGAGCAAGCTTAAGCCGATAGGTGTATGCGCAGCGAAAGCGAGTC
 TGAATAGGGCGTCAAGTTCGTTGTATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAG
 GTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAAGACTCCG
 ATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAA
 AGATATTTAGGTATCGCCTCGGATGAATACCTCAGGGGGTAGAGCACTGGATGGGCTAGG
 GGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCTGAGAGTACTATCCGGGA
 GTCACACGGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCGGACCTACAGCTAA
 GGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGAATCCCAAAACAACCAGGAGGTT
 GGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAAATAAGGGTT
 CCTGCGCCGAAGATGTATCGGGGCTCAAGCCACGAGCCGAAGCTTAGGGTGTGATCCGCA
 AGGGTCACGCGGTAGCGGAGCGTTCTGTAAGCCTGCGAAGGGCGACTCGTGAGAGCGCCT
 GGAGGTATCAGAAGTGCGAATGCTGGCATGAGTAACGACAAACACTGTGAAAGACAGTGT
 CGCCGTAAGTCCAAGGGTTCCTGCGTAAAGTTAATCTTCGCAGGGTTAGCCGGTCCCTAA
 GGCGAGGCCGAAAGGCGTAGTCGATGGGAATGCAGTGAATATTCTGCAGCCAGTGGATGG
 TGACGAATCCCGTATGTTGTCTGACCTTATTGGATTGGTTGGGCCTCGAAGGGGTTCCAG
 GAAATAGCCTCCACATTAGACCGTACCCTAAACCGACACAGGTGGACTGGTAGAGTATAC
 CAAGGCGCTTGAGAGAACTATGTTGAAGGAACTCGGCAATTTACCTCCGTAACTTCGGGA
 TAAGGGGGCCCATGCCGTGCGCAAGCACGTCGTGGGGGCACAGACCAGGGGGTGGCAACT
 GTTTAACAAAAACACAGGGCTCTGCGAAATCGCAAGATGACGTATAGGGTCTGACGCCTG
 CCCGGTGCCGGAAGGTTAAGAGGAGGAGTGCAAGCTCTGAATTGAAGCCCCGGTAAACGG
 CGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTG
 CACGAATGGCGTAATGACTTCCCCGCTGTCTCCAACATAGACTCAGTGAAATTGAATTCC
 CCGTGAAGATGCGGGGTTCCTGCGGTCAGACGGAAAGACCCCGTGCACCTTTACTGTAGC
 TTTGCGCTGGTATTCGTGACTGTTTGTGTAGAATAGGTGGTAGGCTTTGAAGCTTGGGCG
 CCAGCCTGAGTGGAGCCGAAATGTGAAATACCACCCTAATGGTTATGGATATCTAACCGC
 GACCCATTAGCTGGGTCCGGGACAGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTC
 CCAAAGAGTAACGGAGGCGTGCGACGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAG
 TATAATGGCATAAGCCTGCCTGACTGCGAGACCAACAAGTCGAGCAGAGACGAAAGTCGG
 TCATAGTGATCCGGTGGTCCCACGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCC
 GGGGATAACAGGCTGATGACGCCCAAGAGTCCATATCGACGGCGTCGTTTGGCACCTCGA
 TGTCGGCTCATCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGGCTGTTCGCCGATT
 AAAGTGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTG
 GGTGTTGGAATATTGAGAGGATTTGTCCCTAGTACGAGAGGACCGGGATGAACGTACCTC
 TGGTGGAGCAGTTGTCGTGCCAACGGCAGTGCTGCATAGCTATGTACGGACGGGATAACC
 GCTGAAAGCATCTAAGCGGGAAACCCACCTCAAAACCAGTATTCCCTTGAGAACCGTGGT
 AGACCACCACGTTGATAGGCCGGGTGTGGAAGTGCGGCAACGCATGTAGCTTACCGGTAC
 TAATCGTTCGATTGGCTTGATTGC
 >rRNA_Contig16_4762449-4765292_DIR- /molecule=23s_rRNA /score=3299.4
 TCAAGTGCCTTAAGGGTGTTCGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGC
 TACGCTGCGATAAGCCGTGGGGAGCTGCGAAGAAGCTTTGATCCACGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGTCCTTGTGACTTGGGGCTCAAACAGAAA
 TGGATGACTTCCAAGCCGTGAGGTTTTGGATTTCCGGTTATCAAGCGAAGGTATGAAGCT
 CCTGAATTCATAGGGGGTTTTAAGCGAACCCAGGGAACTGAAACATCTAAGTACCTGGAG
 GAAAGGACATCAACAGAGACTCCGTTAGTAGTGGCGAGCGAACGCGGACCAGGCCAGTGA
 TACATCAAAGACAACCGGAACCTGTCAGGAAAGCAGGGCCTTAGAGGGTGATAGCCCCGT
 ACGGGTAATGCGATGATGTATCCATGAGTAAGGCGGGACACGTGTAATCCTGTCTGAACG
 TGGGGGGACCACCCTCCAAGCCTAAGTACTCCTCAGCGACCGATAGTGAACCAGTACCGT
 GAGGGAAAGGTGAAAAGCACCCCGACGAGGGGAGTGAAATAGACCTGAAACCGGACACCT
 ACAAACAGATGGAGCCCAAGATACGTTCTGGGTGACATCGTACCTTTTGTATTATGGGCC
 AGCGACTTAATTTAACGAGCAAGCTTAAGCCGATAGGTGTATGCGCAGCGAAAGCGAGTC
 TGAATAGGGCGTCAAGTTCGTTGTATTAGACCCGAAACCTAGTGATCTAGCCATGAGCAG
 GTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTTGAAAAAGACTCCG
 ATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAA
 AGATATTTAGGTATCGCCTCGGATGAATACCTCAGGGGGTAGAGCACTGGATGGGCTAGG
 GGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCTGAGAGTACTATCCGGGA
 GTCACACGGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCGGACCTACAGCTAA
 GGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGAATCCCAAAACAACCAGGAGGTT
 GGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAAATAAGGGTT
 CCTGCGCCGAAGATGTATCGGGGCTCAAGCCACGAGCCGAAGCTTAGGGTGTGATCCGCA
 AGGGTCACGCGGTAGCGGAGCGTTCTGTAAGCCTGCGAAGGGCGACTCGTGAGAGCGCCT
 GGAGGTATCAGAAGTGCGAATGCTGGCATGAGTAACGACAAACACTGTGAAAGACAGTGT
 CGCCGTAAGTCCAAGGGTTCCTGCGTAAAGTTAATCTTCGCAGGGTTAGCCGGTCCCTAA
 GGCGAGGCCGAAAGGCGTAGTCGATGGGAATGCAGTGAATATTCTGCAGCCAGTGGATGG
 TGACGAATCCCGTATGTTGTCTGACCTTATTGGATTGGTCGGGCCTCGAAGGGGTTCCAG
 GAAATAGCCTCCACATTAGACCGTACCCTAAACCGACACAGGTGGACTGGTAGAGTATAC
 CAAGGCGCTTGAGAGAACTATGTTGAAGGAACTCGGCAATTTACCTCCGTAACTTCGGGA
 TAAGGGGGCCCATGCCGTGCGCAAGCACGTCGTGGGGGCACAGACCAGGGGGTGGCAACT
 GTTTAACAAAAACACAGGGCTCTGCGAAATCGCAAGATGACGTATAGGGTCTGACGCCTG
 CCCGGTGCCGGAAGGTTAAGAGGAGGAGTGCAAGCTCTGAATTGAAGCCCCGGTAAACGG
 CGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTG
 CACGAATGGCGTAATGACTTCCCCGCTGTCTCCAACATAGACTCAGTGAAATTGAATTCC
 CCGTGAAGATGCGGGGTTCCTGCGGTCAGACGGAAAGACCCCGTGCACCTTTACTGTAGC
 TTTGCGCTGGTATTCGTGACTGTTTGTGTAGAATAGGTGGTAGGCTTTGAAGCTTGGGCG
 CCAGCCTGAGTGGAGCCGAAATGTGAAATACCACCCTAATGGTTATGGATATCTAACCGC
 GACCCATTAGCTGGGTCCGGGACAGCGCATGGTGGGCAGTTTGACTGGGGCGGTCGCCTC
 CCAAAGAGTAACGGAGGCGTGCGACGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAG
 TATAATGGCATAAGCCTGCCTGACTGCGAGACCAACAAGTCGAGCAGAGACGAAAGTCGG
 TCATAGTGATCCGGTGGTCCCACGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCC
 GGGGATAACAGGCTGATGACGCCCAAGAGTCCATATCGACGGCGTCGTTTGGCACCTCGA
 TGTCGGCTCATCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGGCTGTTCGCCGATT
 AAAGTGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCTATCTGCCGTG
 GGTGTTGGAATATTGAGAGGATTTGTCCCTAGTACGAGAGGACCGGGATGAACGTACCTC
 TGGTGGAGCAGTTGTCGTGCCAACGGCAGTGCTGCATAGCTATGTACGGACGGGATAACC
 GCTGAAAGCATCTAAGCGGGAAACCCACCTCAAAACCAGTATTCCCTTGAGAACCGTGGT
 AGACCACCACGTTGATAGGCCGGGTGTGGAAGTGCGGCAACGCATGTAGCTTACCGGTAC
 TAATCGTTCGATTGGCTTGATTGC
 >rRNA_Contig16_1456600-1458076_DIR+ /molecule=16s_rRNA /score=1944.3
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCATAGCAATATGTCAGTGGCAGACGGGTGAGTAACGCGTGGGAACATACCTTTTGGT
 TCGGAACAACTGAGGGAAACTTCAGCTAATACCGGATAAGCCCTAACGGGGAAAGATTTA
 TCGCCGAAAGATTGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTTTTTAAGTCAGA
 GGTGAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGAAAGTCTTGAGTACGGG
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGCCCGTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCTAGGACCGGTCGCAGAGATGTGA
 CCTTCTCTTCGGAGCCTAGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCTTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAAGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGATGCTA
 AAGGGCAACCTCTCGCAAATCTCAAAAAGCCGTCTCAGTTCGGATTGGGCTCTGCAACTC
 GAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTTTTACCTGAAGGTAGTGC
 GCTAACCCGCAAGGGAGGCAGCTAACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT
 >rRNA_Contig16_4766381-4767857_DIR- /molecule=16s_rRNA /score=1944.3
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCATAGCAATATGTCAGTGGCAGACGGGTGAGTAACGCGTGGGAACATACCTTTTGGT
 TCGGAACAACTGAGGGAAACTTCAGCTAATACCGGATAAGCCCTAACGGGGAAAGATTTA
 TCGCCGAAAGATTGGCCCGCGTCTGATTAGCTAGTTGGTGAGGTAATGGCTCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTTTTTAAGTCAGA
 GGTGAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGAAAGTCTTGAGTACGGG
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGCCCGTTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCTAGGACCGGTCGCAGAGATGTGA
 CCTTCTCTTCGGAGCCTAGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCTTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAAGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGATGCTA
 AAGGGCAACCTCTCGCAAATCTCAAAAAGCCGTCTCAGTTCGGATTGGGCTCTGCAACTC
 GAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTTTTACCTGAAGGTAGTGC
 GCTAACCCGCAAGGGAGGCAGCTAACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT