Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 4 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 2 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig40 | 1 | 53344 ..53419 | 0..0 | 84.51 | 67.80 |
| Ala | GGC | Contig40 | 46 | 487475 ..487400 | 0..0 | 87.23 | 69.29 |
| Ala | TGC | Contig40 | 28 | 4854019..4853944 | 0..0 | 86.35 | 74.13 |
| Ala | TGC | Contig40 | 7 | 863419 ..863494 | 0..0 | 86.35 | 74.13 |
| Arg | ACG | Contig40 | 45 | 712189 ..712113 | 0..0 | 89.50 | 67.02 |
| Arg | CCG | Contig40 | 23 | 5202363..5202439 | 0..0 | 86.37 | 55.76 |
| Arg | CCT | Contig40 | 47 | 131976 ..131900 | 0..0 | 77.28 | 47.85 |
| Arg | TCG | Contig40 | 18 | 3841218..3841294 | 0..0 | 83.41 | 59.68 |
| Arg | TCT | Contig40 | 40 | 3052831..3052755 | 0..0 | 80.78 | 58.74 |
| Asn | GTT | Contig40 | 39 | 3088525..3088451 | 0..0 | 86.74 | 66.13 |
| Asp | GTC | Contig40 | 14 | 2786010..2786086 | 0..0 | 97.02 | 82.50 |
| Cys | GCA | Contig40 | 16 | 3086508..3086581 | 0..0 | 66.23 | 44.29 |
| Gln | CTG | Contig40 | 19 | 4121694..4121767 | 0..0 | 72.27 | 41.80 |
| Gln | TTG | Contig40 | 8 | 1217418..1217492 | 0..0 | 69.60 | 40.89 |
| Glu | CTC | Contig40 | 43 | 912003 ..911929 | 0..0 | 69.43 | 40.53 |
| Glu | TTC | Contig40 | 17 | 3274587..3274661 | 0..0 | 60.15 | 31.71 |
| Gly | CCC | Contig40 | 24 | 5450627..5450554 | 0..0 | 78.73 | 56.78 |
| Gly | GCC | Contig40 | 2 | 452418 ..452492 | 0..0 | 86.85 | 67.18 |
| Gly | TCC | Contig40 | 33 | 4093801..4093728 | 0..0 | 82.33 | 66.40 |
| His | GTG | Contig40 | 30 | 4548128..4548052 | 0..0 | 90.83 | 66.86 |
| Ile | GAT | Contig40 | 27 | 4854143..4854067 | 0..0 | 94.55 | 74.83 |
| Ile | GAT | Contig40 | 6 | 863295 ..863371 | 0..0 | 94.55 | 74.83 |
| Leu | CAA | Contig40 | 44 | 879717 ..879633 | 0..0 | 77.17 | 51.28 |
| Leu | CAG | Contig40 | 3 | 553323 ..553409 | 0..0 | 71.53 | 50.53 |
| Leu | GAG | Contig40 | 35 | 3830051..3829967 | 0..0 | 66.55 | 38.50 |
| Leu | TAA | Contig40 | 10 | 2550824..2550910 | 0..0 | 79.75 | 50.55 |
| Leu | TAG | Contig40 | 12 | 2771100..2771184 | 0..0 | 78.45 | 51.59 |
| Lys | CTT | Contig40 | 9 | 2450931..2451006 | 0..0 | 98.46 | 76.50 |
| Lys | TTT | Contig40 | 38 | 3122759..3122684 | 0..0 | 90.38 | 68.53 |
| Met | CAT | Contig40 | 29 | 4785506..4785431 | 0..0 | 86.47 | 64.62 |
| Met | CAT | Contig40 | 31 | 4379003..4378927 | 0..0 | 83.88 | 55.32 |
| Met | CAT | Contig40 | 42 | 1174425..1174349 | 0..0 | 89.01 | 76.46 |
| Phe | GAA | Contig40 | 25 | 5015731..5015656 | 0..0 | 88.73 | 66.87 |
| Pro | CGG | Contig40 | 26 | 4911180..4911104 | 0..0 | 86.36 | 60.13 |
| Pro | GGG | Contig40 | 37 | 3181489..3181412 | 0..0 | 81.40 | 53.97 |
| Pro | TGG | Contig40 | 36 | 3270661..3270585 | 0..0 | 79.83 | 55.97 |
| Ser | CGA | Contig40 | 4 | 609133 ..609222 | 0..0 | 76.06 | 44.47 |
| Ser | GCT | Contig40 | 15 | 3012925..3013018 | 0..0 | 73.97 | 47.48 |
| Ser | GGA | Contig40 | 22 | 5088333..5088422 | 0..0 | 81.68 | 52.08 |
| Ser | TGA | Contig40 | 41 | 3000019..2999930 | 0..0 | 83.46 | 49.96 |
| Thr | CGT | Contig40 | 48 | 70577 ..70502 | 0..0 | 97.39 | 74.93 |
| Thr | GGT | Contig40 | 21 | 5031742..5031816 | 0..0 | 85.75 | 61.42 |
| Thr | TGT | Contig40 | 11 | 2608855..2608929 | 0..0 | 85.75 | 65.03 |
| Trp | CCA | Contig40 | 34 | 4031261..4031186 | 0..0 | 89.52 | 63.77 |
| Tyr | GTA | Contig40 | 32 | 4110558..4110473 | 0..0 | 74.36 | 42.73 |
| Val | CAC | Contig40 | 20 | 4799089..4799163 | 0..0 | 81.20 | 58.80 |
| Val | GAC | Contig40 | 5 | 787043 ..787117 | 0..0 | 89.95 | 69.24 |
| Val | TAC | Contig40 | 13 | 2779292..2779368 | 0..0 | 95.64 | 78.34 |
tRNA Models
Contig40.trna1 (53344-53419) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (53377-53379) Score: 84.51
HMM Sc=67.80 Sec struct Sc=16.71
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna2 (452418-452492) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (452450-452452) Score: 86.85
HMM Sc=67.18 Sec struct Sc=19.67
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGAGGGTTCGAATCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna3 (553323-553409) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (553357-553359) Score: 71.53
HMM Sc=50.53 Sec struct Sc=21.00
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAACTGGTaGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGTCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig40.trna4 (609133-609222) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (609167-609169) Score: 76.06
HMM Sc=44.47 Sec struct Sc=31.59
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCACCGCACTCGAAATGCGGCATAGGTGCAAGCCTATCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig40.trna5 (787043-787117) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (787075-787077) Score: 89.95
HMM Sc=69.24 Sec struct Sc=20.71
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGGAGAGCACCTCGTTGACATCGAGGGGGtCACAGGTTCGATCCCTGTCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna6 (863295-863371) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (863329-863331) Score: 94.55
HMM Sc=74.83 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCGAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna7 (863419-863494) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (863452-863454) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig40.trna8 (1217418-1217492) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (1217450-1217452) Score: 69.60
HMM Sc=40.89 Sec struct Sc=28.71
* | * | * | * | * | * | * |
Seq: TGGGGCGTCGCCAAGTGGTAAGGCAGGGGATTTTGATTCCCCCATgCGGAGGTTCGAATCCTCCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna9 (2450931-2451006) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2450964-2450966) Score: 98.46
HMM Sc=76.50 Sec struct Sc=21.96
* | * | * | * | * | * | * | *
Seq: GGGCGCATAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGtCGTAGGTTCGAGCCCTACTGCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna10 (2550824-2550910) Length: 87 bp
Type: Leu Anticodon: TAA at 35-37 (2550858-2550860) Score: 79.75
HMM Sc=50.55 Sec struct Sc=29.20
* | * | * | * | * | * | * | * | *
Seq: GCGGACGTGGCGGAATTGGTaGACGCAAGGGACTTAAAATCCCTCGATGTAACCATCGTGCGGGTTCGATTCCCGCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig40.trna11 (2608855-2608929) Length: 75 bp
Type: Thr Anticodon: TGT at 33-35 (2608887-2608889) Score: 85.75
HMM Sc=65.03 Sec struct Sc=20.72
* | * | * | * | * | * | * |
Seq: GCCGGCATAGCTCAGCGGTAGAGCAGCGGTTTTGTAAACCGAAGGtCGGGAGTTCAATCCTCTCTGCCGGCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig40.trna12 (2771100-2771184) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (2771134-2771136) Score: 78.45
HMM Sc=51.59 Sec struct Sc=26.86
* | * | * | * | * | * | * | * |
Seq: GCGGGCGTGGCGGAACTGGTaGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTCGTGGGGGTTCGAGTCCCTCCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig40.trna13 (2779292-2779368) Length: 77 bp
Type: Val Anticodon: TAC at 35-37 (2779326-2779328) Score: 95.64
HMM Sc=78.34 Sec struct Sc=17.30
* | * | * | * | * | * | * | *
Seq: GGGCGGTTAGCTCAGCTGGTtAGAGCGCCTGCTTTACACGCAGGATGtCGGCGGTTCGAATCCGTCACCGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna14 (2786010-2786086) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2786044-2786046) Score: 97.02
HMM Sc=82.50 Sec struct Sc=14.52
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTtAGAGCGCCGGCCTGTCACGCCGGAGGtCGCGGGTTCGAGCCCCGTCTCTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna15 (3012925-3013018) Length: 94 bp
Type: Ser Anticodon: GCT at 35-37 (3012959-3012961) Score: 73.97
HMM Sc=47.48 Sec struct Sc=26.49
* | * | * | * | * | * | * | * | * |
Seq: GGAGATGTGGCCGAGTGGCtgAAGGCGGCGGTTTGCTAAACCGTTATAGGGTTGTAAAGCCCTATCGAGGGTTCGAATCCCTCCGTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig40.trna16 (3086508-3086581) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (3086540-3086542) Score: 66.23
HMM Sc=44.29 Sec struct Sc=21.94
* | * | * | * | * | * | * |
Seq: GGCCACGTGGCGGAGTGGTTACGCGCCGGTCTGCAAAACCGTTTACCCCGGTTCAATTCCGGGCGTGGCCTCCA
Str: >>>>>>>..>>>.........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna17 (3274587-3274661) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (3274620-3274622) Score: 60.15
HMM Sc=31.71 Sec struct Sc=28.44
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTATCGGTtAGGACGCCACCCTTTCACGGTGGAGAGAGCGGTTCGATTCCGCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig40.trna18 (3841218-3841294) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (3841252-3841254) Score: 83.41
HMM Sc=59.68 Sec struct Sc=23.73
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGCATCGGATTTCGATTCCGAGGGcCGGGAGTTCGAATCTCTCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna19 (4121694-4121767) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (4121726-4121728) Score: 72.27
HMM Sc=41.80 Sec struct Sc=30.47
* | * | * | * | * | * | * |
Seq: TGGGGAATAGTGTAATGGTAGCACAACAGACTCTGACTCTGTTTGTCTAGGTTCGAATCCTAGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig40.trna20 (4799089-4799163) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (4799121-4799123) Score: 81.20
HMM Sc=58.80 Sec struct Sc=22.40
* | * | * | * | * | * | * |
Seq: GGGCGCATAGCTCAGCGGGAGAGCGTTCCCTTCACACGGGAGAGGtCCAAGGTTCGATCCCTTGTGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna21 (5031742-5031816) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (5031774-5031776) Score: 85.75
HMM Sc=61.42 Sec struct Sc=24.33
* | * | * | * | * | * | * |
Seq: GCTGCCGTAGCTCAGTGGTAGAGCACTCCATTGGTAATGGAGAGGtCGACAGTTCAATCCTGTCTGGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna22 (5088333-5088422) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (5088367-5088369) Score: 81.68
HMM Sc=52.08 Sec struct Sc=29.60
* | * | * | * | * | * | * | * | *
Seq: GGAGAGATGGCCGAGTGGCttAAGGCGCACGCTTGGAAAGCGTGTGTGCGGGAAACCGTACCGTGGGTTCGAATCCCACTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig40.trna23 (5202363-5202439) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (5202397-5202399) Score: 86.37
HMM Sc=55.76 Sec struct Sc=30.61
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAGGtCACACGTTCGAATCGTGTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna24 (5450627-5450554) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (5450595-5450593) Score: 78.73
HMM Sc=56.78 Sec struct Sc=21.95
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGTTCAATGGCAGAACGGCAGCTTCCCAAGCTGCATACGAGGGTTCGATTCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig40.trna25 (5015731-5015656) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (5015698-5015696) Score: 88.73
HMM Sc=66.87 Sec struct Sc=21.86
* | * | * | * | * | * | * | *
Seq: GCCCAGGTAGCTCAGTTGGTAGAGCATGCGACTGAAAATCGCAGTGtCGGTGGTTCGATCCCGCCCCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna26 (4911180-4911104) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (4911146-4911144) Score: 86.36
HMM Sc=60.13 Sec struct Sc=26.23
* | * | * | * | * | * | * | *
Seq: CGGAGTGTGGCTCAGCCcGGTAGAGCACTGCGTTCGGGACGCAGGGGtCGCAGGTTCGAATCCTGCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna27 (4854143-4854067) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (4854109-4854107) Score: 94.55
HMM Sc=74.83 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCGAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna28 (4854019-4853944) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (4853986-4853984) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig40.trna29 (4785506-4785431) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (4785473-4785471) Score: 86.47
HMM Sc=64.62 Sec struct Sc=21.85
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTtAGAGCCGACCGCTCATAACGGTCTGGtTGCAGGTTCGAGTCCTGCCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna30 (4548128-4548052) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (4548094-4548092) Score: 90.83
HMM Sc=66.86 Sec struct Sc=23.97
* | * | * | * | * | * | * | *
Seq: GCAGTTGTAGCTCAGTTGGTtAGAGCGCCTGTCTGTGGAACAGGAGGtCGGTGGTTCGAGCCCACCCAACTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna31 (4379003-4378927) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (4378969-4378967) Score: 83.88
HMM Sc=55.32 Sec struct Sc=28.56
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig40.trna32 (4110558-4110473) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (4110524-4110522) Score: 74.36
HMM Sc=42.73 Sec struct Sc=31.63
* | * | * | * | * | * | * | * | *
Seq: GGGGGAGTGtCCCGAGTGGCaAAGGGAGCTGACTGTAAATCAGCCGCCTCATGGCTtCGCAGGTTCGAGTCCTGCCTCCCCCACCA
Str: >>>>>>>...>>>..........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig40.trna33 (4093801-4093728) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (4093769-4093767) Score: 82.33
HMM Sc=66.40 Sec struct Sc=15.93
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna34 (4031261-4031186) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (4031228-4031226) Score: 89.52
HMM Sc=63.77 Sec struct Sc=25.75
* | * | * | * | * | * | * | *
Seq: AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGtCGTAGGTTCGAGCCCTACCACTCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna35 (3830051-3829967) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (3830017-3830015) Score: 66.55
HMM Sc=38.50 Sec struct Sc=28.05
* | * | * | * | * | * | * | * |
Seq: GCGCTCGTGGCGGAATTGGTaGACGCGCTGCCTTGAGGTGGCAGTCCGTAACAGGGTGGGGGTTCGAGTCCCTCCGAGCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
Contig40.trna36 (3270661-3270585) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (3270627-3270625) Score: 79.83
HMM Sc=55.97 Sec struct Sc=23.86
* | * | * | * | * | * | * | *
Seq: CGGGGTATAGCGCAGCCtGGTAGCGCGGCAGTTTTGGGTACTGCAGGtCGTTGGTTCGAATCCAGCTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna37 (3181489-3181412) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (3181454-3181452) Score: 81.40
HMM Sc=53.97 Sec struct Sc=27.43
* | * | * | * | * | * | * | *
Seq: CGGAGCGTAGCGCAGCCcGGTtAGCGCACTAGTCTGGGAGACTAGGGGtCGGAGGTTCAAATCCTCTCGCTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna38 (3122759-3122684) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (3122726-3122724) Score: 90.38
HMM Sc=68.53 Sec struct Sc=21.85
* | * | * | * | * | * | * | *
Seq: GAGCGCGTAGCTCAGGCGGTAGAGCACGTGACTTTTAATCATGGGGtCGTGGGTTCGAGTCCCACCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna39 (3088525-3088451) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (3088493-3088491) Score: 86.74
HMM Sc=66.13 Sec struct Sc=20.61
* | * | * | * | * | * | * |
Seq: TCCCTGGTAGCTCAGTGGTAGAGCAACCGGCTGTTAACCGGTTGGtCGCTGGTTCGAATCCGGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna40 (3052831-3052755) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (3052797-3052795) Score: 80.78
HMM Sc=58.74 Sec struct Sc=22.04
* | * | * | * | * | * | * | *
Seq: GGTCCCATAGCTCAACTGGAtAGAGTAGCGGATTTCTACTCCGCGGGtTGCAGGTTCGAATCCTGCTGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna41 (3000019-2999930) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (2999985-2999983) Score: 83.46
HMM Sc=49.96 Sec struct Sc=33.50
* | * | * | * | * | * | * | * | *
Seq: GGAAGGGTGGCCGAGTGGTttAAGGCACCGGTCTTGAAAACCGGCGTGGGTGCAAGCCCACCGTGGGTTCGAATCCCACCCCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig40.trna42 (1174425-1174349) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1174391-1174389) Score: 89.01
HMM Sc=76.46 Sec struct Sc=12.55
* | * | * | * | * | * | * | *
Seq: GGCGGGGTAGCTCAGCTGGTtAGAGCACGGGAATCATAATCCTGGGGtCGGGGGTTCGAGTCCCTCTCCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna43 (912003-911929) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (911970-911968) Score: 69.43
HMM Sc=40.53 Sec struct Sc=28.90
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTAGCGGTtAGGACGTCGCCCTCTCACGGCGAAAACAGCGGTTCGATTCCGCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig40.trna44 (879717-879633) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (879683-879681) Score: 77.17
HMM Sc=51.28 Sec struct Sc=25.89
* | * | * | * | * | * | * | * |
Seq: GCCCCTGTGGCGGAACTGGTaGACGCGCTCGACTCAAAATCGAGTTCCGCAAGGAGTGCTGGTTCGATTCCGGCCAGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig40.trna45 (712189-712113) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (712155-712153) Score: 89.50
HMM Sc=67.02 Sec struct Sc=22.48
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCACTAGACTACGAATCTAGGGGtCAGGAGTTCGAATCTCTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna46 (487475-487400) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (487442-487440) Score: 87.23
HMM Sc=69.29 Sec struct Sc=17.94
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna47 (131976-131900) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (131942-131940) Score: 77.28
HMM Sc=47.85 Sec struct Sc=29.43
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGCTCAGCCGGAtAGAGCGGCGGTTTCCTAAACCGTAGGtCGGATGTTCGAGTCATCCCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig40.trna48 (70577-70502) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (70544-70542) Score: 97.39
HMM Sc=74.93 Sec struct Sc=22.46
* | * | * | * | * | * | * | *
Seq: GCCGCAATAGCTCAGCTGGTAGAGCACGTCATTCGTAATGACGGGGtCGGGGGTTCGAATCCCTCTTGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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