Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-09-25
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig40	RNAmmer-1.2	rRNA	866939	867052	91.9	+	.	5s_rRNA	
 Contig40	RNAmmer-1.2	rRNA	4850427	4850540	91.9	-	.	5s_rRNA	
 Contig40	RNAmmer-1.2	rRNA	863913	866769	3306.5	+	.	23s_rRNA	
 Contig40	RNAmmer-1.2	rRNA	4850701	4853557	3306.5	-	.	23s_rRNA	
 Contig40	RNAmmer-1.2	rRNA	861574	863050	1954.7	+	.	16s_rRNA	
 Contig40	RNAmmer-1.2	rRNA	4854387	4855863	1954.7	-	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig40_866939-867052_DIR+ /molecule=5s_rRNA /score=91.9
 TGGTGGTTCTAGCGAGGAGCCTCAACCCGATCCCATCCCGAACTCGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTTCGTCTTAAGACGCGGGAGAGTAGGTCGCTGCCAGGCC
 >rRNA_Contig40_4850427-4850540_DIR- /molecule=5s_rRNA /score=91.9
 TGGTGGTTCTAGCGAGGAGCCTCAACCCGATCCCATCCCGAACTCGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTTCGTCTTAAGACGCGGGAGAGTAGGTCGCTGCCAGGCC
 >rRNA_Contig40_863913-866769_DIR+ /molecule=23s_rRNA /score=3306.5
 TCAAGTGCCTTAAGGGTGTTCGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGC
 TACGCTGCGATAAGCCGTGGGGAGCTGCGAAGAAGCTTTGATCCGCGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGGCCTTGCGCCTTGGATTTGGGAATAACT
 CTGCAAGGAGTGATCTCCGGAACCAAGTCTGCAAGGATTTGGATTTCCGGTTATCAAACG
 AAGGTATAGAACTCCTGAATACATAGGGGGTTTTAAGCGAACCCAGGGAACTGAAACATC
 TAAGTACCTGGAGGAAAGGACATCAACAGAGACTCCGTTAGTAGTGGCGAGCGAACGCGG
 ACCAGGCCAGTGATACATCAAAGACAACCGGAACCAGTCAGGAAAGCTGGGCCTCAGAGG
 GTGATAGCCCCGTACGGGTAATGCGATGATGTATCCACGAGTAAGGCGGGACACGTGAAA
 TCCTGTCTGAACATGGGGGGACCACCCTCCAAGCCTAAGTACTCCTCAGCGACCGATAGT
 GAACCAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGACGAGGGGAGTGAAATAGACCTG
 AAACCGGACACCTACAAACAGACGGAGCCCAAGATACGTTCTGGGTGACGTCGTACCTTT
 TGTATTATGGGCCAGCGACTTAATTTAACGAGCAAGCTTAAGCCGATAGGCGTATGCGCA
 GCGAAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTGTATTAGACCCGAAACCTAGTGATC
 TAGCCATGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTT
 GAAAAAGACTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCT
 GGTTCTCCGCGAAAGATATTTAGGTATCGCCTCGGACGAATACCTCGGGGGGTAGAGCAC
 TGGATGGGCTAGGGGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCCGAGA
 GTACTATCCGGGAGTCACACGGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCG
 GACCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGAATCCCAAAA
 CAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGT
 CTAAATAAGGGTTCCTGCGCCGAAGATGTATCGGGGCTCAAGCCACGAGCCGAAGCTTAG
 GGTGTGATCCGCAAGGGTCACGCGGTAGCGGAGCGTTCTGTAAGCCTGCGAAGGGCGACT
 CGTGAGAGCGCCTGGAGGTATCAGAAGTGCGAATGCTGGCATGAGTAACGACAAACACTG
 TGAAAGACAGTGTCGCCGAAAGTCCAAGGGTTCCTGCGTAAAGTTAATCTTCGCAGGGTT
 AGCCGGTCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAATGCAGTGAATATTCTGC
 AGCCAGTGGATGGTGACGAATCCCGTGTGTTGTCTGACCTTATTGGATTGGTCGGGCCTC
 GAAGGGGTTCCAGGAAATAGCCTCCACATTAGACCGTACCCGAAACCGACACAGGTGGAC
 TGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGGAACTCGGCAATTTACCTC
 CGTAACTTCGGGATAAGGAGGCCCTCTGGGCGCGCAAGCGGTCAGGGGGGGCACAGACCA
 GGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAATCGCAAGATGACGTATAG
 GGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGGAGGAGTGCAAGCTCTGAATTGAAG
 CCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGT
 AAGTTCCGACCTGCACGAATGGCGTAATGACTTCCCCGCTGTCTCCAACATAGACTCAGT
 GAAATTGAACTCCCCGTGAAGATGCGGGGTTCCTGCGGTCAGACGGAAAGACCCCGTGCA
 CCTTTACTGTAGCTTTGCGCTGGTATTCGTGACTGTTTGTGTAGAATAGGTGGTAGGCTT
 TGAAGCTTGGGCGCCAGCCTGAGTGGAGCCGCAATGTGAAATACCACCCTAATGGTTATG
 GATATCTAACCGCGTCCCGTCATCCGGGACCGGGACAGCGCATGGTGGGCAGTTTGACTG
 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCGATGGTAGGCTCAGAACGGTCGGAA
 ATCGTTCGTCGAGTATAATGGCATAAGCCTGCCTGACTGCGAGACCAACAAGTCGAGCAG
 AGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCGTGGATGGGCCATCGCTCAACGGA
 TAAAAGGTACGCCGGGGATAACAGGCTGATGACGCCCAAGAGTCCATATCGACGGCGTCG
 TTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGG
 CTGTTCGCCGATTAAAGTGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTC
 CCTATCTGCCGTGGGTGTTGGAATATTGAGAGGATTTGTCCCTAGTACGAGAGGACCGGG
 ATGAACGTACCTCTGGTGGAGCAGTTGTCGCGCCAGCGGCAGTGCTGCATAGCTATGTAC
 GGACGGGATAACCGCTGAAAGCATCTAAGCGGGAAACCCACCTCAAAACCAGTATTCCCT
 TGAGAACCGTGGTAGACCACCACGTTGATAGGCCGGATGTGGAAGTGCGGCAACGCATGT
 AGCTTACCGGTACTAATCGTTCGATTGGCTTGATTGC
 >rRNA_Contig40_4850701-4853557_DIR- /molecule=23s_rRNA /score=3306.5
 TCAAGTGCCTTAAGGGTGTTCGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGC
 TACGCTGCGATAAGCCGTGGGGAGCTGCGAAGAAGCTTTGATCCGCGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGGCCTTGCGCCTTGGATTTGGGAATAACT
 CTGCAAGGAGTGATCTCCGGAACCAAGTCTGCAAGGATTTGGATTTCCGGTTATCAAACG
 AAGGTATAGAACTCCTGAATACATAGGGGGTTTTAAGCGAACCCAGGGAACTGAAACATC
 TAAGTACCTGGAGGAAAGGACATCAACAGAGACTCCGTTAGTAGTGGCGAGCGAACGCGG
 ACCAGGCCAGTGATACATCAAAGACAACCGGAACCAGTCAGGAAAGCTGGGCCTCAGAGG
 GTGATAGCCCCGTACGGGTAATGCGATGATGTATCCACGAGTAAGGCGGGACACGTGAAA
 TCCTGTCTGAACATGGGGGGACCACCCTCCAAGCCTAAGTACTCCTCAGCGACCGATAGT
 GAACCAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGACGAGGGGAGTGAAATAGACCTG
 AAACCGGACACCTACAAACAGACGGAGCCCAAGATACGTTCTGGGTGACGTCGTACCTTT
 TGTATTATGGGCCAGCGACTTAATTTAACGAGCAAGCTTAAGCCGATAGGCGTATGCGCA
 GCGAAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTGTATTAGACCCGAAACCTAGTGATC
 TAGCCATGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTT
 GAAAAAGACTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCT
 GGTTCTCCGCGAAAGATATTTAGGTATCGCCTCGGACGAATACCTCGGGGGGTAGAGCAC
 TGGATGGGCTAGGGGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCCGAGA
 GTACTATCCGGGAGTCACACGGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCG
 GACCTACAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGGAATCCCAAAA
 CAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGT
 CTAAATAAGGGTTCCTGCGCCGAAGATGTATCGGGGCTCAAGCCACGAGCCGAAGCTTAG
 GGTGTGATCCGCAAGGGTCACGCGGTAGCGGAGCGTTCTGTAAGCCTGCGAAGGGCGACT
 CGTGAGAGCGCCTGGAGGTATCAGAAGTGCGAATGCTGGCATGAGTAACGACAAACACTG
 TGAAAGACAGTGTCGCCGAAAGTCCAAGGGTTCCTGCGTAAAGTTAATCTTCGCAGGGTT
 AGCCGGTCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAATGCAGTGAATATTCTGC
 AGCCAGTGGATGGTGACGAATCCCGTGTGTTGTCTGACCTTATTGGATTGGTCGGGCCTC
 GAAGGGGTTCCAGGAAATAGCCTCCACATTAGACCGTACCCGAAACCGACACAGGTGGAC
 TGGTAGAGTATACCAAGGCGCTTGAGAGAACTATGTTGAAGGAACTCGGCAATTTACCTC
 CGTAACTTCGGGATAAGGAGGCCCTCTGGGCGCGCAAGCGGTCAGGGGGGGCACAGACCA
 GGGGGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAATCGCAAGATGACGTATAG
 GGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGGAGGAGTGCAAGCTCTGAATTGAAG
 CCCCGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGT
 AAGTTCCGACCTGCACGAATGGCGTAATGACTTCCCCGCTGTCTCCAACATAGACTCAGT
 GAAATTGAACTCCCCGTGAAGATGCGGGGTTCCTGCGGTCAGACGGAAAGACCCCGTGCA
 CCTTTACTGTAGCTTTGCGCTGGTATTCGTGACTGTTTGTGTAGAATAGGTGGTAGGCTT
 TGAAGCTTGGGCGCCAGCCTGAGTGGAGCCGCAATGTGAAATACCACCCTAATGGTTATG
 GATATCTAACCGCGTCCCGTCATCCGGGACCGGGACAGCGCATGGTGGGCAGTTTGACTG
 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCGATGGTAGGCTCAGAACGGTCGGAA
 ATCGTTCGTCGAGTATAATGGCATAAGCCTGCCTGACTGCGAGACCAACAAGTCGAGCAG
 AGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCGTGGATGGGCCATCGCTCAACGGA
 TAAAAGGTACGCCGGGGATAACAGGCTGATGACGCCCAAGAGTCCATATCGACGGCGTCG
 TTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGG
 CTGTTCGCCGATTAAAGTGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTC
 CCTATCTGCCGTGGGTGTTGGAATATTGAGAGGATTTGTCCCTAGTACGAGAGGACCGGG
 ATGAACGTACCTCTGGTGGAGCAGTTGTCGCGCCAGCGGCAGTGCTGCATAGCTATGTAC
 GGACGGGATAACCGCTGAAAGCATCTAAGCGGGAAACCCACCTCAAAACCAGTATTCCCT
 TGAGAACCGTGGTAGACCACCACGTTGATAGGCCGGATGTGGAAGTGCGGCAACGCATGT
 AGCTTACCGGTACTAATCGTTCGATTGGCTTGATTGC
 >rRNA_Contig40_861574-863050_DIR+ /molecule=16s_rRNA /score=1954.7
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCGTAGCAATACGTCAGTGGCAGACGGGTGAGTAACGCGTGGGAACGTACCTTTTGGT
 TCGGAACAACTGAGGGAAACTTCAGCTAATACCGGATAAGCCCTTACGGGGAAAGATTTA
 TCGCCGAAAGATCGGCCCGCGTCTGATTAGCTAGTTGGTGGGGTAATGGCTCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTTTTTAAGTCAGA
 GGTGAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGGAAATCTTGAGTATGGG
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGCCCATTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCCAGGACCGGTCGCAGAGATGTGA
 CCTTCTCTTCGGAGCCTGGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCTTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAAGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGATGCTA
 AGGGGCGACCCCTCGCAAATCTCAAAAAGCCGTCTCAGTTCGGATTGGAGTCTGCAACTC
 GACTCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTTTTACCTGAAGGTAGTGC
 GCTAACCCGCAAGGGAGGCAGCTAACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT
 >rRNA_Contig40_4854387-4855863_DIR- /molecule=16s_rRNA /score=1954.7
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCGTAGCAATACGTCAGTGGCAGACGGGTGAGTAACGCGTGGGAACGTACCTTTTGGT
 TCGGAACAACTGAGGGAAACTTCAGCTAATACCGGATAAGCCCTTACGGGGAAAGATTTA
 TCGCCGAAAGATCGGCCCGCGTCTGATTAGCTAGTTGGTGGGGTAATGGCTCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGTTTTTAAGTCAGA
 GGTGAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGGAAATCTTGAGTATGGG
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGCCCATTACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCCAGGACCGGTCGCAGAGATGTGA
 CCTTCTCTTCGGAGCCTGGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCTTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAAGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGATGCTA
 AGGGGCGACCCCTCGCAAATCTCAAAAAGCCGTCTCAGTTCGGATTGGAGTCTGCAACTC
 GACTCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTTTTACCTGAAGGTAGTGC
 GCTAACCCGCAAGGGAGGCAGCTAACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT