DNA Replication, Recombination and Repair

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	BX571963	RPA0343	COG0122	44	1e-05
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	L	BX571963	RPA4755	COG0122	147	5e-37
3-methyladenine DNA glycosylase	L	BX571963	RPA1067	COG2818	269	2e-73
3-methyladenine DNA glycosylase	L	BX571963	RPA2586	COG2094	217	4e-58
5'-3' exonuclease (including N-terminal domain of PolI)	L	BX571963	RPA4723	COG0258	268	2e-72
Adenine-specific DNA methylase containing a Zn-ribbon	L	BX571963	RPA1546	COG1743	36	0.002
Adenine-specific DNA methylase containing a Zn-ribbon	L	BX571963	RPA2220	COG1743	401	1.0e-112
Adenine specific DNA methylase Mod	L	BX571963	RPA1026	COG2189	48	1e-06
A/G-specific DNA glycosylase	L	BX571963	RPA0343	COG1194	84	1e-17
A/G-specific DNA glycosylase	L	BX571963	RPA4485	COG1194	350	6e-98
Alkylated DNA repair protein	L	BX571963	RPA1722	COG3145	167	5e-43
Antirestriction protein	L	BX571963	RPA2252	COG4227	378	1.0e-106
ATPase involved in DNA repair	L	BX571963	RPA0003	COG0419	47	2e-06
ATPase involved in DNA repair	L	BX571963	RPA0049	COG0419	37	0.002
ATPase involved in DNA repair	L	BX571963	RPA0099	COG0419	37	0.002
ATPase involved in DNA repair	L	BX571963	RPA0131	COG0419	45	4e-06
ATPase involved in DNA repair	L	BX571963	RPA0149	COG0419	50	2e-07
ATPase involved in DNA repair	L	BX571963	RPA0168	COG0497	38	0.001
ATPase involved in DNA repair	L	BX571963	RPA0196	COG0419	58	8e-10
ATPase involved in DNA repair	L	BX571963	RPA0203	COG0419	42	3e-05
ATPase involved in DNA repair	L	BX571963	RPA0469	COG0419	44	2e-05
ATPase involved in DNA repair	L	BX571963	RPA0573	COG0419	45	6e-06
ATPase involved in DNA repair	L	BX571963	RPA0666	COG0419	48	2e-06
ATPase involved in DNA repair	L	BX571963	RPA0682	COG0419	48	3e-06
ATPase involved in DNA repair	L	BX571963	RPA0690	COG0419	58	6e-10
ATPase involved in DNA repair	L	BX571963	RPA0691	COG0419	46	4e-06
ATPase involved in DNA repair	L	BX571963	RPA0722	COG0419	55	4e-09
ATPase involved in DNA repair	L	BX571963	RPA0747	COG0419	52	1e-07
ATPase involved in DNA repair	L	BX571963	RPA0755	COG0419	39	5e-04
ATPase involved in DNA repair	L	BX571963	RPA0758	COG0419	42	6e-05
ATPase involved in DNA repair	L	BX571963	RPA0858	COG0419	45	5e-06
ATPase involved in DNA repair	L	BX571963	RPA0883	COG0419	37	0.001
ATPase involved in DNA repair	L	BX571963	RPA0919	COG0419	42	1e-04
ATPase involved in DNA repair	L	BX571963	RPA0988	COG0419	35	0.004
ATPase involved in DNA repair	L	BX571963	RPA0989	COG0419	37	0.002
ATPase involved in DNA repair	L	BX571963	RPA1135	COG0419	37	0.004
ATPase involved in DNA repair	L	BX571963	RPA1214	COG0419	38	0.002
ATPase involved in DNA repair	L	BX571963	RPA1232	COG0419	38	4e-04
ATPase involved in DNA repair	L	BX571963	RPA1253	COG0419	36	0.003
ATPase involved in DNA repair	L	BX571963	RPA1254	COG0419	38	5e-04
ATPase involved in DNA repair	L	BX571963	RPA1364	COG0419	46	3e-06
ATPase involved in DNA repair	L	BX571963	RPA1386	COG0419	47	2e-06
ATPase involved in DNA repair	L	BX571963	RPA1398	COG0419	39	4e-04
ATPase involved in DNA repair	L	BX571963	RPA1408	COG0419	48	6e-07
ATPase involved in DNA repair	L	BX571963	RPA1426	COG0419	46	5e-06
ATPase involved in DNA repair	L	BX571963	RPA1444	COG0419	39	4e-04
ATPase involved in DNA repair	L	BX571963	RPA1470	COG0419	45	2e-05
ATPase involved in DNA repair	L	BX571963	RPA1479	COG0419	54	2e-08
ATPase involved in DNA repair	L	BX571963	RPA1567	COG0419	43	2e-05
ATPase involved in DNA repair	L	BX571963	RPA1650	COG0419	51	6e-08
ATPase involved in DNA repair	L	BX571963	RPA1738	COG0419	36	0.006
ATPase involved in DNA repair	L	BX571963	RPA1792	COG0419	42	2e-04
ATPase involved in DNA repair	L	BX571963	RPA2040	COG0419	45	3e-06
ATPase involved in DNA repair	L	BX571963	RPA2041	COG0419	45	7e-06
ATPase involved in DNA repair	L	BX571963	RPA2063	COG0419	53	3e-08
ATPase involved in DNA repair	L	BX571963	RPA2114	COG0419	47	1e-06
ATPase involved in DNA repair	L	BX571963	RPA2118	COG0419	54	1e-08
ATPase involved in DNA repair	L	BX571963	RPA2190	COG0419	52	9e-08
ATPase involved in DNA repair	L	BX571963	RPA2276	COG0419	36	0.002
ATPase involved in DNA repair	L	BX571963	RPA2310	COG0419	45	7e-06
ATPase involved in DNA repair	L	BX571963	RPA2330	COG0419	39	0.001
ATPase involved in DNA repair	L	BX571963	RPA2360	COG0419	49	5e-07
ATPase involved in DNA repair	L	BX571963	RPA2382	COG0419	41	9e-05
ATPase involved in DNA repair	L	BX571963	RPA2497	COG0419	45	4e-06
ATPase involved in DNA repair	L	BX571963	RPA2563	COG0419	49	3e-07
ATPase involved in DNA repair	L	BX571963	RPA2610	COG0419	42	6e-05
ATPase involved in DNA repair	L	BX571963	RPA2622	COG0419	47	1e-06
ATPase involved in DNA repair	L	BX571963	RPA2633	COG0419	43	3e-05
ATPase involved in DNA repair	L	BX571963	RPA2643	COG0419	54	3e-08
ATPase involved in DNA repair	L	BX571963	RPA2679	COG0419	49	3e-07
ATPase involved in DNA repair	L	BX571963	RPA2752	COG0419	43	7e-05
ATPase involved in DNA repair	L	BX571963	RPA2816	COG0419	52	2e-07
ATPase involved in DNA repair	L	BX571963	RPA2926	COG0419	45	5e-06
ATPase involved in DNA repair	L	BX571963	RPA3057	COG0419	50	3e-07
ATPase involved in DNA repair	L	BX571963	RPA3293	COG0419	38	5e-04
ATPase involved in DNA repair	L	BX571963	RPA3294	COG0419	37	0.002
ATPase involved in DNA repair	L	BX571963	RPA3316	COG0419	39	0.001
ATPase involved in DNA repair	L	BX571963	RPA3385	COG0419	43	2e-05
ATPase involved in DNA repair	L	BX571963	RPA3508	COG0419	47	2e-06
ATPase involved in DNA repair	L	BX571963	RPA3519	COG0497	521	1.0e-149
ATPase involved in DNA repair	L	BX571963	RPA3519	COG0419	44	3e-05
ATPase involved in DNA repair	L	BX571963	RPA3609	COG0419	52	1e-07
ATPase involved in DNA repair	L	BX571963	RPA3688	COG0419	41	3e-04
ATPase involved in DNA repair	L	BX571963	RPA3789	COG0419	42	4e-05
ATPase involved in DNA repair	L	BX571963	RPA3808	COG0419	37	0.001
ATPase involved in DNA repair	L	BX571963	RPA3962	COG0419	43	2e-05
ATPase involved in DNA repair	L	BX571963	RPA3991	COG0419	44	4e-05
ATPase involved in DNA repair	L	BX571963	RPA4013	COG0419	52	1e-07
ATPase involved in DNA repair	L	BX571963	RPA4025	COG0419	36	0.002
ATPase involved in DNA repair	L	BX571963	RPA4038	COG0419	35	0.007
ATPase involved in DNA repair	L	BX571963	RPA4041	COG0419	37	0.002
ATPase involved in DNA repair	L	BX571963	RPA4087	COG0419	45	4e-05
ATPase involved in DNA repair	L	BX571963	RPA4160	COG0419	52	8e-08
ATPase involved in DNA repair	L	BX571963	RPA4163	COG0419	45	4e-06
ATPase involved in DNA repair	L	BX571963	RPA4237	COG0419	43	2e-05
ATPase involved in DNA repair	L	BX571963	RPA4265	COG0419	37	0.003
ATPase involved in DNA repair	L	BX571963	RPA4398	COG0419	41	1e-04
ATPase involved in DNA repair	L	BX571963	RPA4399	COG0419	45	6e-06
ATPase involved in DNA repair	L	BX571963	RPA4489	COG0497	41	6e-04
ATPase involved in DNA repair	L	BX571963	RPA4489	COG0419	85	3e-17
ATPase involved in DNA repair	L	BX571963	RPA4528	COG0419	40	4e-04
ATPase involved in DNA repair	L	BX571963	RPA4551	COG0419	40	2e-04
ATPase involved in DNA repair	L	BX571963	RPA4575	COG0419	45	9e-06
ATPase involved in DNA repair	L	BX571963	RPA4585	COG0419	38	0.002
ATPase involved in DNA repair	L	BX571963	RPA4650	COG0419	41	2e-04
ATPase involved in DNA repair	L	BX571963	RPA4715	COG0419	42	1e-04
ATPase involved in DNA repair	L	BX571963	RPA4730	COG0419	44	3e-05
ATPase involved in DNA repair	L	BX571963	RPA4736	COG0419	43	2e-05
ATPase involved in DNA repair	L	BX571963	RPA4777	COG0419	36	0.004
ATPase involved in DNA repair	L	BX571963	RPA4809	COG0419	47	9e-07
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA0306	COG2256	37	0.003
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA0615	COG2256	87	4e-18
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA1102	COG2256	84	1e-17
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA1126	COG2256	59	1e-09
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA1439	COG2256	36	0.006
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA1561	COG2256	40	2e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA2776	COG2256	44	2e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA2959	COG2256	47	6e-06
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA2960	COG2256	47	2e-06
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA3147	COG2256	43	1e-04
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA3220	COG2256	597	1.0e-172
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA3618	COG2256	36	0.002
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA4084	COG2256	46	8e-06
ATPase related to the helicase subunit of the Holliday junction resolvase	L	BX571963	RPA4433	COG2256	42	2e-04
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	BX571963	RPA1273	COG0507	114	8e-27
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	BX571963	RPA2260	COG0507	131	4e-31
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	BX571963	RPA2802	COG0507	40	5e-04
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	BX571963	RPA3506	COG0507	42	2e-04
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	BX571963	RPA0074	COG1074	578	1.0e-166
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	BX571963	RPA2215	COG1074	338	1e-93
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	BX571963	RPA2802	COG1074	157	2e-39
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	BX571963	RPA3506	COG1074	157	4e-39
ATP-dependent nuclease subunit B	L	BX571963	RPA0075	COG3857	61	4e-10
ATP-dependent nuclease subunit B	L	BX571963	RPA2216	COG3857	50	6e-07
Bacterial nucleoid DNA-binding protein	L	BX571963	RPA0066	COG0776	115	6e-28
Bacterial nucleoid DNA-binding protein	L	BX571963	RPA2742	COG0776	103	3e-24
Bacterial nucleoid DNA-binding protein	L	BX571963	RPA2953	COG0776	81	2e-17

BASAL REPLICATION MACHINERY

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATPase involved in DNA replication	L	BX571963	RPA0615	COG0470	39	9e-04
ATPase involved in DNA replication	L	BX571963	RPA2776	COG0470	46	5e-06
ATPase involved in DNA replication initiation	L	BX571963	RPA0001	COG0593	386	1.0e-108
ATPase involved in DNA replication initiation	L	BX571963	RPA0193	COG0593	36	0.004
ATPase involved in DNA replication initiation	L	BX571963	RPA1126	COG0593	39	0.001
ATPase involved in DNA replication initiation	L	BX571963	RPA3049	COG0593	120	8e-29
ATPase involved in DNA replication initiation	L	BX571963	RPA4084	COG0593	41	2e-04
ATP-dependent DNA ligase	L	BX571963	RPA0802	COG1793	267	1e-72
ATP-dependent DNA ligase	L	BX571963	RPA3650	COG1793	270	3e-73
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	BX571963	RPA0046	COG0749	69	2e-13
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	BX571963	RPA3045	COG0749	58	9e-10
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	BX571963	RPA4723	COG0749	718	0.0
DNA polymerase II small subunit/DNA polymerase delta subunit B	L	BX571963	RPA1480	COG1311	44	1e-05
DNA polymerase II small subunit/DNA polymerase delta subunit B	L	BX571963	RPA3969	COG1311	40	2e-04
DNA primase	L	BX571963	RPA1287	COG0358	364	1.0e-101
DNA replication protein	L	BX571963	RPA0001	COG1484	40	4e-04
DNA replication protein	L	BX571963	RPA0009	COG1484	38	0.002
DNA replication protein	L	BX571963	RPA1102	COG1484	38	9e-04
DNA replication protein	L	BX571963	RPA1561	COG1484	35	0.008
DNA replication protein	L	BX571963	RPA3147	COG1484	38	0.003
DNA replication protein	L	BX571963	RPA3220	COG1484	40	3e-04
DNA replication protein	L	BX571963	RPA4084	COG1484	43	7e-05
DNA replication protein	L	BX571963	RPA4124	COG1484	36	0.003
DNA replication protein	L	BX571963	RPA4335	COG1484	37	0.001
DNA replication protein	L	BX571963	RPA4433	COG1484	40	9e-04
NAD-dependent DNA ligase (contains BRCT domain type II)	L	BX571963	RPA1171	COG0272	47	4e-06
NAD-dependent DNA ligase (contains BRCT domain type II)	L	BX571963	RPA3517	COG0272	889	0.0
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX571963	RPA0181	COG1198	743	0.0
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX571963	RPA2662	COG1198	78	3e-15
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX571963	RPA2663	COG1198	77	5e-15
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	BX571963	RPA4343	COG1198	47	5e-06
Replicative DNA helicase	L	BX571963	RPA0009	COG0305	41	2e-04
Replicative DNA helicase	L	BX571963	RPA3084	COG0305	482	1.0e-137
Replicative DNA helicase	L	BX571963	RPA3089	COG0305	44	2e-05
Replicative DNA helicase	L	BX571963	RPA4335	COG0305	94	8e-21
Ribonuclease HI	L	BX571963	RPA4269	COG0328	194	2e-51
Ribonuclease HII	L	BX571963	RPA1034	COG0164	195	2e-51
Ribonuclease HIII	L	BX571963	RPA1034	COG1039	60	2e-10
Single-stranded DNA-binding protein	L	BX571963	RPA2814	COG0629	145	2e-36
Topoisomerase IA	L	BX571963	RPA3124	COG0550	626	1.0e-180
Topoisomerase IA	L	BX571963	RPA4136	COG0550	216	3e-57
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	BX571963	RPA2599	COG0188	1004	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	BX571963	RPA2703	COG0188	764	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	BX571963	RPA0004	COG0187	884	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	BX571963	RPA2486	COG0187	825	0.0

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Cdc6-related protein AAA superfamily ATPase	L	BX571963	RPA1102	COG1474	39	5e-04
Cdc6-related protein AAA superfamily ATPase	L	BX571963	RPA1126	COG1474	40	5e-04
Cdc6-related protein AAA superfamily ATPase	L	BX571963	RPA1268	COG1474	41	2e-04
Cdc6-related protein AAA superfamily ATPase	L	BX571963	RPA1561	COG1474	36	0.002
Cdc6-related protein AAA superfamily ATPase	L	BX571963	RPA2107	COG1474	38	0.004
Cdc6-related protein AAA superfamily ATPase	L	BX571963	RPA3618	COG1474	43	2e-05
Cdc6-related protein AAA superfamily ATPase	L	BX571963	RPA4084	COG1474	46	1e-05
Deoxyribodipyrimidine photolyase	L	BX571963	RPA3179	COG0415	441	1.0e-125
DNA alkylation repair protein	L	BX571963	RPA4277	COG4335	42	3e-05
DNA G:T-mismatch repair endonuclease	L	BX571963	RPA0350	COG3727	122	1e-29
DNA gyrase inhibitor	L	BX571963	RPA0249	COG3449	39	2e-04
DNA gyrase inhibitor	L	BX571963	RPA0878	COG3449	108	6e-25
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA0004	COG0323	40	0.001
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA0980	COG0323	40	3e-04
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA1328	COG0323	38	0.005
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA1932	COG0323	41	1e-04
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA2219	COG0323	37	0.008
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA2486	COG0323	40	8e-04
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA3018	COG0323	38	0.002
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA4371	COG0323	600	1.0e-172
DNA mismatch repair enzyme (predicted ATPase)	L	BX571963	RPA4815	COG0323	40	7e-04
DNA modification methylase	L	BX571963	RPA1026	COG0863	211	7e-56
DNA or RNA helicase of superfamily II	L	BX571963	RPA0181	COG1061	40	6e-04
DNA or RNA helicase of superfamily II	L	BX571963	RPA0535	COG1061	52	1e-07
DNA or RNA helicase of superfamily II	L	BX571963	RPA0807	COG1061	41	3e-04
DNA or RNA helicase of superfamily II	L	BX571963	RPA2214	COG1061	126	9e-30
DNA or RNA helicase of superfamily II	L	BX571963	RPA2218	COG1061	66	1e-11
DNA or RNA helicase of superfamily II	L	BX571963	RPA2477	COG1061	87	2e-18
DNA or RNA helicase of superfamily II	L	BX571963	RPA2662	COG1061	58	3e-09
DNA or RNA helicase of superfamily II	L	BX571963	RPA2663	COG1061	69	2e-12
DNA or RNA helicase of superfamily II	L	BX571963	RPA3670	COG1061	69	9e-13
DNA or RNA helicase of superfamily II	L	BX571963	RPA4001	COG1061	62	9e-11
DNA or RNA helicase of superfamily II	L	BX571963	RPA4343	COG1061	59	1e-09
DNA or RNA helicase of superfamily II	L	BX571963	RPA4826	COG1061	55	2e-08

DNA POLYMERASE III SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA polymerase III alpha subunit	L	BX571963	RPA1803	COG0587	933	0.0
DNA polymerase III alpha subunit	L	BX571963	RPA2924	COG0587	1217	0.0
DNA polymerase III alpha subunit (gram-positive type)	L	BX571963	RPA0301	COG2176	113	2e-26
DNA polymerase III alpha subunit (gram-positive type)	L	BX571963	RPA1803	COG2176	62	3e-10
DNA polymerase III alpha subunit (gram-positive type)	L	BX571963	RPA2924	COG2176	130	7e-31
DNA polymerase III chi subunit	L	BX571963	RPA3059	COG2927	137	3e-34
DNA polymerase III delta subunit	L	BX571963	RPA0289	COG1466	147	1e-36
DNA polymerase III delta subunit	L	BX571963	RPA0615	COG1466	48	2e-06
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	BX571963	RPA0046	COG0847	44	6e-06
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	BX571963	RPA0301	COG0847	171	3e-44
DNA polymerase III gamma/tau subunits	L	BX571963	RPA0615	COG2812	434	1.0e-122
DNA polymerase III gamma/tau subunits	L	BX571963	RPA1102	COG2812	45	1e-05
DNA polymerase III gamma/tau subunits	L	BX571963	RPA1506	COG2812	35	0.006
DNA polymerase III gamma/tau subunits	L	BX571963	RPA2776	COG2812	94	2e-20
DNA polymerase III gamma/tau subunits	L	BX571963	RPA2960	COG2812	37	0.002
DNA polymerase III gamma/tau subunits	L	BX571963	RPA3081	COG2812	35	0.010
DNA polymerase III gamma/tau subunits	L	BX571963	RPA3147	COG2812	39	0.002
DNA polymerase III gamma/tau subunits	L	BX571963	RPA3220	COG2812	78	1e-15
DNA polymerase III gamma/tau subunits	L	BX571963	RPA4777	COG2812	35	0.007
DNA polymerase sliding clamp subunit (PCNA homolog)	L	BX571963	RPA0002	COG0592	333	2e-92

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA repair exonuclease	L	BX571963	RPA0124	COG0420	44	1e-05
DNA repair exonuclease	L	BX571963	RPA0125	COG0420	40	2e-04
DNA repair exonuclease	L	BX571963	RPA1480	COG0420	47	1e-06
DNA repair exonuclease	L	BX571963	RPA3969	COG0420	41	1e-04
DNA repair photolyase	L	BX571963	RPA1033	COG1533	306	2e-84
DNA repair photolyase	L	BX571963	RPA1666	COG1533	39	8e-04
DNA repair photolyase	L	BX571963	RPA1668	COG1533	41	3e-04
DNA repair photolyase	L	BX571963	RPA2354	COG1533	41	1e-04
DNA repair photolyase	L	BX571963	RPA2634	COG1533	48	8e-07
DNA repair protein	L	BX571963	RPA0385	COG2003	242	2e-65
DNA topoisomerase VI subunit B	L	BX571963	RPA0079	COG1389	43	7e-05
DNA topoisomerase VI subunit B	L	BX571963	RPA0980	COG1389	38	0.001
DNA topoisomerase VI subunit B	L	BX571963	RPA2486	COG1389	38	0.002
DNA uptake protein and related DNA-binding protein	L	BX571963	RPA0207	COG1555	46	1e-06
DNA uptake protein and related DNA-binding protein	L	BX571963	RPA0584	COG1555	58	2e-09
ERCC4-like helicase	L	BX571963	RPA0807	COG1111	46	1e-05
ERCC4-like helicase	L	BX571963	RPA2214	COG1111	38	0.003
ERCC4-like helicase	L	BX571963	RPA2218	COG1111	48	5e-06
ERCC4-like helicase	L	BX571963	RPA2477	COG1111	64	2e-11
ERCC4-like helicase	L	BX571963	RPA2662	COG1111	50	5e-07
ERCC4-like helicase	L	BX571963	RPA2663	COG1111	41	5e-04
ERCC4-like helicase	L	BX571963	RPA3670	COG1111	60	5e-10
ERCC4-like helicase	L	BX571963	RPA4001	COG1111	50	8e-07
ERCC4-like helicase	L	BX571963	RPA4343	COG1111	54	5e-08
ERCC4-type nuclease	L	BX571963	RPA1171	COG1948	58	3e-09
Excinuclease ATPase subunit	L	BX571963	RPA0049	COG0178	54	2e-08
Excinuclease ATPase subunit	L	BX571963	RPA0055	COG0178	45	9e-06
Excinuclease ATPase subunit	L	BX571963	RPA0098	COG0178	40	3e-04
Excinuclease ATPase subunit	L	BX571963	RPA0099	COG0178	41	1e-04
Excinuclease ATPase subunit	L	BX571963	RPA0129	COG0178	44	2e-05
Excinuclease ATPase subunit	L	BX571963	RPA0131	COG0178	38	7e-04
Excinuclease ATPase subunit	L	BX571963	RPA0149	COG0178	50	2e-07
Excinuclease ATPase subunit	L	BX571963	RPA0196	COG0178	46	3e-06
Excinuclease ATPase subunit	L	BX571963	RPA0573	COG0178	38	6e-04
Excinuclease ATPase subunit	L	BX571963	RPA0665	COG0178	39	3e-04
Excinuclease ATPase subunit	L	BX571963	RPA0666	COG0178	60	4e-10
Excinuclease ATPase subunit	L	BX571963	RPA0682	COG0178	53	7e-08
Excinuclease ATPase subunit	L	BX571963	RPA0690	COG0178	47	8e-07
Excinuclease ATPase subunit	L	BX571963	RPA0691	COG0178	51	9e-08
Excinuclease ATPase subunit	L	BX571963	RPA0700	COG0178	46	3e-06
Excinuclease ATPase subunit	L	BX571963	RPA0722	COG0178	55	5e-09
Excinuclease ATPase subunit	L	BX571963	RPA0747	COG0178	52	7e-08
Excinuclease ATPase subunit	L	BX571963	RPA0755	COG0178	36	0.003
Excinuclease ATPase subunit	L	BX571963	RPA0758	COG0178	48	1e-06
Excinuclease ATPase subunit	L	BX571963	RPA0858	COG0178	46	4e-06
Excinuclease ATPase subunit	L	BX571963	RPA0919	COG0178	54	3e-08
Excinuclease ATPase subunit	L	BX571963	RPA0988	COG0178	45	7e-06
Excinuclease ATPase subunit	L	BX571963	RPA0989	COG0178	42	4e-05
Excinuclease ATPase subunit	L	BX571963	RPA1214	COG0178	56	6e-09
Excinuclease ATPase subunit	L	BX571963	RPA1232	COG0178	45	6e-06
Excinuclease ATPase subunit	L	BX571963	RPA1233	COG0178	40	2e-04
Excinuclease ATPase subunit	L	BX571963	RPA1253	COG0178	40	1e-04
Excinuclease ATPase subunit	L	BX571963	RPA1254	COG0178	44	6e-06
Excinuclease ATPase subunit	L	BX571963	RPA1364	COG0178	44	1e-05
Excinuclease ATPase subunit	L	BX571963	RPA1386	COG0178	49	4e-07
Excinuclease ATPase subunit	L	BX571963	RPA1398	COG0178	43	4e-05
Excinuclease ATPase subunit	L	BX571963	RPA1399	COG0178	39	8e-04
Excinuclease ATPase subunit	L	BX571963	RPA1408	COG0178	38	8e-04
Excinuclease ATPase subunit	L	BX571963	RPA1416	COG0178	47	1e-06
Excinuclease ATPase subunit	L	BX571963	RPA1417	COG0178	50	2e-07
Excinuclease ATPase subunit	L	BX571963	RPA1426	COG0178	54	1e-08
Excinuclease ATPase subunit	L	BX571963	RPA1444	COG0178	46	3e-06
Excinuclease ATPase subunit	L	BX571963	RPA1445	COG0178	36	0.004
Excinuclease ATPase subunit	L	BX571963	RPA1470	COG0178	59	7e-10
Excinuclease ATPase subunit	L	BX571963	RPA1479	COG0178	57	2e-09
Excinuclease ATPase subunit	L	BX571963	RPA1566	COG0178	46	1e-05
Excinuclease ATPase subunit	L	BX571963	RPA1567	COG0178	54	6e-09
Excinuclease ATPase subunit	L	BX571963	RPA1650	COG0178	49	2e-07
Excinuclease ATPase subunit	L	BX571963	RPA1738	COG0178	56	6e-09
Excinuclease ATPase subunit	L	BX571963	RPA1751	COG0178	52	3e-08
Excinuclease ATPase subunit	L	BX571963	RPA1752	COG0178	62	5e-11
Excinuclease ATPase subunit	L	BX571963	RPA1791	COG0178	55	4e-09
Excinuclease ATPase subunit	L	BX571963	RPA1792	COG0178	68	2e-12
Excinuclease ATPase subunit	L	BX571963	RPA2005	COG0178	56	9e-09
Excinuclease ATPase subunit	L	BX571963	RPA2040	COG0178	47	1e-06
Excinuclease ATPase subunit	L	BX571963	RPA2063	COG0178	49	4e-07
Excinuclease ATPase subunit	L	BX571963	RPA2114	COG0178	36	0.005
Excinuclease ATPase subunit	L	BX571963	RPA2118	COG0178	72	4e-14
Excinuclease ATPase subunit	L	BX571963	RPA2190	COG0178	49	9e-07
Excinuclease ATPase subunit	L	BX571963	RPA2275	COG0178	48	5e-07
Excinuclease ATPase subunit	L	BX571963	RPA2276	COG0178	51	1e-07
Excinuclease ATPase subunit	L	BX571963	RPA2310	COG0178	39	4e-04
Excinuclease ATPase subunit	L	BX571963	RPA2330	COG0178	57	3e-09
Excinuclease ATPase subunit	L	BX571963	RPA2360	COG0178	49	5e-07
Excinuclease ATPase subunit	L	BX571963	RPA2382	COG0178	41	1e-04
Excinuclease ATPase subunit	L	BX571963	RPA2413	COG0178	52	4e-08
Excinuclease ATPase subunit	L	BX571963	RPA2414	COG0178	44	1e-05
Excinuclease ATPase subunit	L	BX571963	RPA2497	COG0178	34	0.008
Excinuclease ATPase subunit	L	BX571963	RPA2563	COG0178	56	3e-09
Excinuclease ATPase subunit	L	BX571963	RPA2610	COG0178	40	3e-04
Excinuclease ATPase subunit	L	BX571963	RPA2622	COG0178	44	1e-05
Excinuclease ATPase subunit	L	BX571963	RPA2633	COG0178	35	0.007
Excinuclease ATPase subunit	L	BX571963	RPA2643	COG0178	71	2e-13
Excinuclease ATPase subunit	L	BX571963	RPA2679	COG0178	36	0.003
Excinuclease ATPase subunit	L	BX571963	RPA2816	COG0178	1574	0.0
Excinuclease ATPase subunit	L	BX571963	RPA2926	COG0178	38	6e-04
Excinuclease ATPase subunit	L	BX571963	RPA3057	COG0178	41	3e-04
Excinuclease ATPase subunit	L	BX571963	RPA3265	COG0178	45	2e-05
Excinuclease ATPase subunit	L	BX571963	RPA3293	COG0178	49	3e-07
Excinuclease ATPase subunit	L	BX571963	RPA3294	COG0178	70	2e-13
Excinuclease ATPase subunit	L	BX571963	RPA3385	COG0178	41	1e-04
Excinuclease ATPase subunit	L	BX571963	RPA3471	COG0178	38	0.001
Excinuclease ATPase subunit	L	BX571963	RPA3508	COG0178	36	0.003
Excinuclease ATPase subunit	L	BX571963	RPA3609	COG0178	43	6e-05
Excinuclease ATPase subunit	L	BX571963	RPA3665	COG0178	39	3e-04
Excinuclease ATPase subunit	L	BX571963	RPA3666	COG0178	42	5e-05
Excinuclease ATPase subunit	L	BX571963	RPA3688	COG0178	57	4e-09
Excinuclease ATPase subunit	L	BX571963	RPA3719	COG0178	65	5e-12
Excinuclease ATPase subunit	L	BX571963	RPA3720	COG0178	57	9e-10
Excinuclease ATPase subunit	L	BX571963	RPA3789	COG0178	42	4e-05
Excinuclease ATPase subunit	L	BX571963	RPA3808	COG0178	67	2e-12
Excinuclease ATPase subunit	L	BX571963	RPA3809	COG0178	45	6e-06
Excinuclease ATPase subunit	L	BX571963	RPA3962	COG0178	67	2e-12
Excinuclease ATPase subunit	L	BX571963	RPA3991	COG0178	63	5e-11
Excinuclease ATPase subunit	L	BX571963	RPA4013	COG0178	46	9e-06
Excinuclease ATPase subunit	L	BX571963	RPA4022	COG0178	55	5e-09
Excinuclease ATPase subunit	L	BX571963	RPA4023	COG0178	56	2e-09
Excinuclease ATPase subunit	L	BX571963	RPA4025	COG0178	41	7e-05
Excinuclease ATPase subunit	L	BX571963	RPA4026	COG0178	42	3e-05
Excinuclease ATPase subunit	L	BX571963	RPA4037	COG0178	56	2e-09
Excinuclease ATPase subunit	L	BX571963	RPA4038	COG0178	48	5e-07
Excinuclease ATPase subunit	L	BX571963	RPA4041	COG0178	54	2e-08
Excinuclease ATPase subunit	L	BX571963	RPA4046	COG0178	45	5e-06
Excinuclease ATPase subunit	L	BX571963	RPA4087	COG0178	51	3e-07
Excinuclease ATPase subunit	L	BX571963	RPA4160	COG0178	52	9e-08
Excinuclease ATPase subunit	L	BX571963	RPA4163	COG0178	34	0.009
Excinuclease ATPase subunit	L	BX571963	RPA4237	COG0178	59	4e-10
Excinuclease ATPase subunit	L	BX571963	RPA4265	COG0178	54	4e-08
Excinuclease ATPase subunit	L	BX571963	RPA4398	COG0178	63	2e-11
Excinuclease ATPase subunit	L	BX571963	RPA4399	COG0178	46	3e-06
Excinuclease ATPase subunit	L	BX571963	RPA4408	COG0178	44	2e-05
Excinuclease ATPase subunit	L	BX571963	RPA4409	COG0178	36	0.005
Excinuclease ATPase subunit	L	BX571963	RPA4575	COG0178	69	1e-12
Excinuclease ATPase subunit	L	BX571963	RPA4650	COG0178	41	1e-04
Excinuclease ATPase subunit	L	BX571963	RPA4715	COG0178	52	5e-08
Excinuclease ATPase subunit	L	BX571963	RPA4730	COG0178	42	8e-05
Excinuclease ATPase subunit	L	BX571963	RPA4736	COG0178	37	0.001
Excinuclease ATPase subunit	L	BX571963	RPA4777	COG0178	39	4e-04
Excinuclease ATPase subunit	L	BX571963	RPA4809	COG0178	36	0.002
Exonuclease III	L	BX571963	RPA0281	COG0708	249	2e-67
Exonuclease III	L	BX571963	RPA2861	COG0708	321	5e-89
Exonuclease III	L	BX571963	RPA3307	COG0708	284	4e-78
Exonuclease VII large subunit	L	BX571963	RPA1161	COG1570	430	1.0e-122
Exonuclease VII small subunit	L	BX571963	RPA0953	COG1722	58	9e-11
Factor for inversion stimulation Fis transcriptional activator	L	BX571963	RPA1268	COG2901	44	3e-05
Factor for inversion stimulation Fis transcriptional activator	L	BX571963	RPA1529	COG2901	37	0.002
Factor for inversion stimulation Fis transcriptional activator	L	BX571963	RPA2593	COG2901	68	1e-12
Formamidopyrimidine-DNA glycosylase	L	BX571963	RPA0084	COG0266	334	5e-93
G:T/U mismatch-specific DNA glycosylase	L	BX571963	RPA3830	COG3663	77	5e-16
Helicase subunit of the DNA excision repair complex	L	BX571963	RPA0181	COG0556	39	0.001
Helicase subunit of the DNA excision repair complex	L	BX571963	RPA1171	COG0556	36	0.009
Helicase subunit of the DNA excision repair complex	L	BX571963	RPA2214	COG0556	39	0.001
Helicase subunit of the DNA excision repair complex	L	BX571963	RPA2477	COG0556	46	7e-06
Helicase subunit of the DNA excision repair complex	L	BX571963	RPA2662	COG0556	36	0.008
Helicase subunit of the DNA excision repair complex	L	BX571963	RPA2663	COG0556	64	6e-11
Helicase subunit of the DNA excision repair complex	L	BX571963	RPA3670	COG0556	46	7e-06
Helicase subunit of the DNA excision repair complex	L	BX571963	RPA4343	COG0556	1089	0.0
Holliday junction resolvasome DNA-binding subunit	L	BX571963	RPA1100	COG0632	208	3e-55
Holliday junction resolvasome DNA-binding subunit	L	BX571963	RPA1171	COG0632	36	0.007
Holliday junction resolvasome endonuclease subunit	L	BX571963	RPA1099	COG0817	194	3e-51
Holliday junction resolvasome helicase subunit	L	BX571963	RPA0615	COG2255	43	8e-05
Holliday junction resolvasome helicase subunit	L	BX571963	RPA1102	COG2255	503	1.0e-144
Holliday junction resolvasome helicase subunit	L	BX571963	RPA1126	COG2255	45	2e-05
Holliday junction resolvasome helicase subunit	L	BX571963	RPA2959	COG2255	38	0.003
Holliday junction resolvasome helicase subunit	L	BX571963	RPA2960	COG2255	49	9e-07
Holliday junction resolvasome helicase subunit	L	BX571963	RPA3147	COG2255	42	1e-04
Holliday junction resolvasome helicase subunit	L	BX571963	RPA3220	COG2255	71	2e-13
Holliday junction resolvasome helicase subunit	L	BX571963	RPA4084	COG2255	54	4e-08
HrpA-like helicase	L	BX571963	RPA0535	COG1643	747	0.0
HrpA-like helicase	L	BX571963	RPA2477	COG1643	38	0.002
HrpA-like helicase	L	BX571963	RPA2663	COG1643	38	0.003
HrpA-like helicase	L	BX571963	RPA4001	COG1643	44	4e-05
Inactivated superfamily I helicase	L	BX571963	RPA0075	COG3893	369	1.0e-103
Integrase	L	BX571963	RPA0182	COG0582	68	7e-13
Integrase	L	BX571963	RPA0506	COG0582	47	2e-06
Integrase	L	BX571963	RPA2204	COG0582	55	1e-08
Integrase	L	BX571963	RPA2534	COG0582	35	0.006
Methylated DNA-protein cysteine methyltransferase	L	BX571963	RPA0341	COG0350	152	3e-38
Methylated DNA-protein cysteine methyltransferase	L	BX571963	RPA4427	COG0350	125	2e-30
Methylated DNA-protein cysteine methyltransferase	L	BX571963	RPA4762	COG0350	113	9e-27
Mg-dependent DNase	L	BX571963	RPA2778	COG0084	304	4e-84
Micrococcal nuclease (thermonuclease) homologs	L	BX571963	RPA0032	COG1525	43	1e-05
Micrococcal nuclease (thermonuclease) homologs	L	BX571963	RPA0791	COG1525	92	4e-20
Micrococcal nuclease (thermonuclease) homologs	L	BX571963	RPA2332	COG1525	87	2e-18
Micrococcal nuclease (thermonuclease) homologs	L	BX571963	RPA4563	COG1525	65	5e-12
Mismatch repair ATPase (MutS family)	L	BX571963	RPA0305	COG1193	36	0.001
Mismatch repair ATPase (MutS family)	L	BX571963	RPA0512	COG1193	113	6e-26
Mismatch repair ATPase (MutS family)	L	BX571963	RPA0512	COG0249	883	0.0
Mismatch repair ATPase (MutS family)	L	BX571963	RPA1408	COG0249	36	0.004
N6-adenine-specific methylase	L	BX571963	RPA0030	COG0742	40	3e-04
N6-adenine-specific methylase	L	BX571963	RPA0252	COG0742	42	3e-05
N6-adenine-specific methylase	L	BX571963	RPA0607	COG0742	45	5e-06
N6-adenine-specific methylase	L	BX571963	RPA1166	COG0742	176	6e-46
N6-adenine-specific methylase	L	BX571963	RPA1167	COG0742	45	6e-06
N6-adenine-specific methylase	L	BX571963	RPA1546	COG0742	52	4e-08
N6-adenine-specific methylase	L	BX571963	RPA2202	COG0742	37	0.003
N6-adenine-specific methylase	L	BX571963	RPA3066	COG0742	38	0.001
N6-adenine-specific methylase	L	BX571963	RPA3514	COG0742	41	1e-04
N6-adenine-specific methylase	L	BX571963	RPA4287	COG0742	37	0.001
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	BX571963	RPA0594	COG2816	40	9e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	BX571963	RPA0613	COG2816	252	2e-68
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	BX571963	RPA1073	COG2816	67	6e-13
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	BX571963	RPA2722	COG2816	44	9e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA0171	COG0494	47	8e-07
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA0174	COG0494	49	2e-07
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA0594	COG0494	52	1e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA0613	COG0494	43	4e-05
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA1005	COG0494	45	4e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA1073	COG0494	45	3e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA1187	COG0494	56	2e-09
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA3687	COG0494	38	4e-04
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA4390	COG0494	39	2e-04
NTP pyrophosphohydrolase including oxidative damage repair protein	L	BX571963	RPA4520	COG0494	46	2e-06
Nuclease subunit of the excinuclease complex	L	BX571963	RPA1171	COG0322	636	0.0
Nuclease subunit of the excinuclease complex	L	BX571963	RPA4343	COG0322	41	5e-04
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	BX571963	RPA1802	COG0389	77	3e-15
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	BX571963	RPA3135	COG0389	304	6e-84
Plasmid replication initiator protein	L	BX571963	RPA2240	COG5534	258	4e-70
Plasmid replication initiator protein	L	BX571964	pRPA1	COG5534	67	2e-12
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX571963	RPA0318	COG1241	51	2e-07
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX571963	RPA1185	COG1241	46	6e-06
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX571963	RPA1506	COG1241	39	5e-04
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX571963	RPA2595	COG1241	41	2e-04
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX571963	RPA3089	COG1241	37	0.003
Predicted ATPase involved in replication control Cdc46/Mcm family	L	BX571963	RPA4632	COG1241	38	0.002
Predicted ATP-dependent endonuclease of the OLD family	L	BX571963	RPA0003	COG3593	39	5e-04
Predicted ATP-dependent endonuclease of the OLD family	L	BX571963	RPA2382	COG3593	41	6e-05
Predicted ATP-dependent endonuclease of the OLD family	L	BX571963	RPA2566	COG3593	42	9e-05
Predicted ATP-dependent endonuclease of the OLD family	L	BX571963	RPA3519	COG3593	40	3e-04
Predicted ATP-dependent endonuclease of the OLD family	L	BX571963	RPA4489	COG3593	39	0.002
Predicted ATP-dependent endonuclease of the OLD family	L	BX571963	RPA4528	COG3593	37	0.002
Predicted DNA alkylation repair protein	L	BX571963	RPA4277	COG4912	34	0.008
Predicted DNA modification methylase	L	BX571963	RPA0607	COG1041	41	9e-05
Predicted DNA modification methylase	L	BX571963	RPA0763	COG1041	40	2e-04
Predicted DNA modification methylase	L	BX571963	RPA1026	COG1041	38	0.002
Predicted DNA modification methylase	L	BX571963	RPA1166	COG1041	38	4e-04
Predicted DNA modification methylase	L	BX571963	RPA1167	COG1041	35	0.008
Predicted DNA modification methylase	L	BX571963	RPA1307	COG1041	48	5e-07
Predicted DNA modification methylase	L	BX571963	RPA1546	COG1041	40	2e-04
Predicted DNA modification methylase	L	BX571963	RPA2202	COG1041	36	0.007
Predicted DNA modification methylase	L	BX571963	RPA2249	COG1041	47	8e-06
Predicted DNA modification methylase	L	BX571963	RPA2580	COG1041	34	0.007
Predicted DNA modification methylase	L	BX571963	RPA3562	COG1041	58	1e-09
Predicted DNA modification methylase	L	BX571964	pRPA4	COG1041	45	2e-05
Predicted EndoIII-related endonuclease	L	BX571963	RPA0343	COG0177	291	3e-80
Predicted EndoIII-related endonuclease	L	BX571963	RPA4485	COG0177	118	6e-28
Predicted EndoIII-related endonuclease	L	BX571963	RPA4755	COG0177	37	0.002
Predicted endonuclease containing a URI domain	L	BX571963	RPA3518	COG2827	100	2e-23
Predicted endonuclease containing a URI domain	L	BX571963	RPA3625	COG2827	60	1e-10
Predicted endonuclease containing a URI domain	L	BX571963	RPA3704	COG2827	101	1e-23
Predicted endonuclease containing a URI domain	L	BX571963	RPA3811	COG2827	104	1e-24
Predicted endonuclease containing a URI domain	L	BX571963	RPA4488	COG2827	100	2e-23
Predicted endonuclease distantly related to Holliday junction resolvase	L	BX571963	RPA0323	COG0792	114	2e-27
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)	L	BX571963	RPA3113	COG0816	145	1e-36
Predicted endonuclease (RecB family)	L	BX571963	RPA0323	COG4998	34	0.005
Predicted eukaryotic-type DNA primase	L	BX571963	RPA3650	COG3285	340	2e-94
Predicted methylated DNA-protein cysteine methyltransferase	L	BX571963	RPA0341	COG3695	54	2e-08
Predicted methylated DNA-protein cysteine methyltransferase	L	BX571963	RPA4427	COG3695	56	2e-09
Predicted methylated DNA-protein cysteine methyltransferase	L	BX571963	RPA4762	COG3695	44	8e-06
Predicted N6-adenine-specific DNA methylase	L	BX571963	RPA0607	COG0116	41	1e-04
Predicted N6-adenine-specific DNA methylase	L	BX571963	RPA1167	COG0116	35	0.006
Predicted N6-adenine-specific DNA methylase	L	BX571963	RPA3562	COG0116	44	1e-05
Predicted N6-adenine-specific DNA methylase	L	BX571964	pRPA4	COG0116	39	9e-04
Predicted NTP pyrophosphohydrolase	L	BX571963	RPA0171	COG4119	35	0.002
Predicted NTP pyrophosphohydrolase	L	BX571963	RPA0174	COG4119	34	0.007
Predicted NTP pyrophosphohydrolase	L	BX571963	RPA0594	COG4119	37	6e-04
Predicted NTP pyrophosphohydrolase	L	BX571963	RPA1005	COG4119	39	3e-04
Predicted polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain	L	BX571963	RPA0043	COG1315	37	0.001
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	BX571963	RPA3120	COG0758	296	2e-81
Predicted site-specific integrase-resolvase	L	BX571964	pRPA5	COG2452	41	7e-05
Rad3-related DNA helicase	L	BX571963	RPA2662	COG1199	37	0.006
RecA-family ATPase	L	BX571963	RPA0009	COG3598	40	5e-04
RecA-family ATPase	L	BX571963	RPA3089	COG3598	43	3e-05
RecA-family ATPase	L	BX571963	RPA4546	COG3598	67	4e-12
RecA/RadA recombinase	L	BX571963	RPA0009	COG0468	49	8e-07
RecA/RadA recombinase	L	BX571963	RPA3084	COG0468	36	0.007
RecA/RadA recombinase	L	BX571963	RPA3089	COG0468	67	3e-12
RecA/RadA recombinase	L	BX571963	RPA3851	COG0468	323	2e-89
RecA/RadA recombinase	L	BX571963	RPA4335	COG0468	46	2e-06
RecB family exonuclease	L	BX571963	RPA0074	COG2887	38	0.004
RecB family exonuclease	L	BX571963	RPA0075	COG2887	102	1e-22
RecG-like helicase	L	BX571963	RPA0181	COG1200	56	7e-09
RecG-like helicase	L	BX571963	RPA2218	COG1200	41	6e-04
RecG-like helicase	L	BX571963	RPA2477	COG1200	61	1e-10
RecG-like helicase	L	BX571963	RPA2662	COG1200	778	0.0
RecG-like helicase	L	BX571963	RPA2663	COG1200	332	1e-91
RecG-like helicase	L	BX571963	RPA3670	COG1200	44	2e-05
RecG-like helicase	L	BX571963	RPA4001	COG1200	57	5e-09
RecG-like helicase	L	BX571963	RPA4343	COG1200	42	1e-04
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	BX571963	RPA0334	COG1107	49	7e-07
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	BX571963	RPA2508	COG1107	36	0.006
Recombinational DNA repair ATPase (RecF pathway)	L	BX571963	RPA0003	COG1195	288	5e-79
Recombinational DNA repair ATPase (RecF pathway)	L	BX571963	RPA3519	COG1195	46	5e-06
Recombinational DNA repair ATPase (RecF pathway)	L	BX571963	RPA4489	COG1195	44	5e-05
Recombinational DNA repair ATPase (RecF pathway)	L	BX571963	RPA4528	COG1195	39	5e-04
Recombinational DNA repair protein (RecF pathway)	L	BX571963	RPA0617	COG0353	266	7e-73
Recombinational DNA repair protein (RecF pathway)	L	BX571963	RPA2700	COG1381	150	9e-38
Reverse gyrase	L	BX571963	RPA1777	COG1110	33	0.008
Reverse gyrase	L	BX571963	RPA2214	COG1110	41	6e-04
Reverse gyrase	L	BX571963	RPA2477	COG1110	55	9e-09
Reverse gyrase	L	BX571963	RPA2662	COG1110	60	6e-10
Reverse gyrase	L	BX571963	RPA2663	COG1110	53	2e-07
Reverse gyrase	L	BX571963	RPA3124	COG1110	257	2e-69
Reverse gyrase	L	BX571963	RPA4136	COG1110	68	3e-12
Reverse gyrase	L	BX571963	RPA4343	COG1110	37	0.007
Serine/threonine protein kinase	L	BX571963	RPA1327	COG0515	79	4e-16
Serine/threonine protein kinase	L	BX571963	RPA1671	COG0515	129	4e-31
Serine/threonine protein kinase	L	BX571963	RPA2107	COG0515	82	3e-16
Serine/threonine protein kinase	L	BX571963	RPA3200	COG0515	128	1e-30
Single-stranded DNA-specific exonuclease	L	BX571963	RPA2508	COG0608	367	1.0e-102
Site-specific DNA methylase	L	BX571963	RPA0349	COG0270	150	1e-37
Site-specific recombinase DNA invertase Pin homologs	L	BX571963	RPA2207	COG1961	88	2e-18
Site-specific recombinase DNA invertase Pin homologs	L	BX571963	RPA4541	COG1961	116	1e-27
Site-specific recombinase DNA invertase Pin homologs	L	BX571964	pRPA5	COG1961	118	2e-28
Site-specific recombinase XerC	L	BX571963	RPA0182	COG4973	217	7e-58
Site-specific recombinase XerC	L	BX571963	RPA0506	COG4973	182	3e-47
Site-specific recombinase XerC	L	BX571963	RPA1332	COG4973	53	2e-08
Site-specific recombinase XerC	L	BX571963	RPA4082	COG4973	43	4e-05
Site-specific recombinase XerD	L	BX571963	RPA0182	COG4974	226	2e-60
Site-specific recombinase XerD	L	BX571963	RPA0506	COG4974	307	6e-85
Site-specific recombinase XerD	L	BX571963	RPA1332	COG4974	58	1e-09
Site-specific recombinase XerD	L	BX571963	RPA2204	COG4974	53	6e-08
Site-specific recombinase XerD	L	BX571963	RPA2534	COG4974	35	0.006
Site-specific recombinase XerD	L	BX571963	RPA4082	COG4974	43	6e-05
Superfamily I DNA and RNA helicase and helicase subunits	L	BX571963	RPA2260	COG1112	40	0.002
Superfamily I DNA and RNA helicase	L	BX571963	RPA0074	COG0210	134	5e-32
Superfamily I DNA and RNA helicase	L	BX571963	RPA1273	COG0210	35	0.007
Superfamily I DNA and RNA helicase	L	BX571963	RPA2215	COG0210	178	3e-45
Superfamily I DNA and RNA helicase	L	BX571963	RPA2802	COG0210	446	1.0e-126
Superfamily I DNA and RNA helicase	L	BX571963	RPA3506	COG0210	611	1.0e-176
Superfamily II DNA and RNA helicase	L	BX571963	RPA0491	COG0513	67	8e-12
Superfamily II DNA and RNA helicase	L	BX571963	RPA0535	COG0513	41	3e-04
Superfamily II DNA and RNA helicase	L	BX571963	RPA0807	COG0513	83	1e-16
Superfamily II DNA and RNA helicase	L	BX571963	RPA2214	COG0513	62	2e-10
Superfamily II DNA and RNA helicase	L	BX571963	RPA2218	COG0513	69	1e-12
Superfamily II DNA and RNA helicase	L	BX571963	RPA2477	COG0513	408	1.0e-115
Superfamily II DNA and RNA helicase	L	BX571963	RPA2662	COG0513	54	5e-08
Superfamily II DNA and RNA helicase	L	BX571963	RPA2663	COG0513	81	3e-16
Superfamily II DNA and RNA helicase	L	BX571963	RPA3670	COG0513	399	1.0e-112
Superfamily II DNA and RNA helicase	L	BX571963	RPA4001	COG0513	329	5e-91
Superfamily II DNA and RNA helicase	L	BX571963	RPA4343	COG0513	63	9e-11
Superfamily II DNA and RNA helicase	L	BX571963	RPA4826	COG0513	94	2e-20
Superfamily II DNA helicase	L	BX571963	RPA0181	COG0514	38	0.003
Superfamily II DNA helicase	L	BX571963	RPA0491	COG0514	37	0.006
Superfamily II DNA helicase	L	BX571963	RPA0807	COG0514	68	3e-12
Superfamily II DNA helicase	L	BX571963	RPA2214	COG0514	51	4e-07
Superfamily II DNA helicase	L	BX571963	RPA2218	COG0514	42	2e-04
Superfamily II DNA helicase	L	BX571963	RPA2477	COG0514	119	4e-28
Superfamily II DNA helicase	L	BX571963	RPA2662	COG0514	55	2e-08
Superfamily II DNA helicase	L	BX571963	RPA2663	COG0514	41	4e-04
Superfamily II DNA helicase	L	BX571963	RPA3670	COG0514	102	7e-23
Superfamily II DNA helicase	L	BX571963	RPA4001	COG0514	80	4e-16
Superfamily II DNA helicase	L	BX571963	RPA4343	COG0514	58	3e-09
Superfamily II DNA helicase	L	BX571963	RPA4826	COG0514	706	0.0
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX571963	RPA0181	COG4098	63	5e-11
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX571963	RPA2214	COG4098	41	4e-04
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX571963	RPA2662	COG4098	59	9e-10
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX571963	RPA2663	COG4098	77	9e-15
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	BX571963	RPA4343	COG4098	55	2e-08
Superfamily II DNA/RNA helicase SNF2 family	L	BX571963	RPA2218	COG0553	95	3e-20
Superfamily II DNA/RNA helicase SNF2 family	L	BX571963	RPA2477	COG0553	42	1e-04
Superfamily II RNA helicase	L	BX571963	RPA0491	COG4581	61	4e-10
Superfamily II RNA helicase	L	BX571963	RPA2477	COG4581	45	1e-05
Superfamily II RNA helicase	L	BX571963	RPA2662	COG4581	37	0.004
Superfamily II RNA helicase	L	BX571963	RPA2663	COG4581	45	2e-05
Superfamily II RNA helicase	L	BX571963	RPA3670	COG4581	41	1e-04
Superfamily II RNA helicase	L	BX571963	RPA4001	COG4581	38	0.002
Transcription-repair coupling factor (superfamily II helicase)	L	BX571963	RPA0181	COG1197	61	2e-10
Transcription-repair coupling factor (superfamily II helicase)	L	BX571963	RPA0488	COG1197	35	0.005
Transcription-repair coupling factor (superfamily II helicase)	L	BX571963	RPA2477	COG1197	41	2e-04
Transcription-repair coupling factor (superfamily II helicase)	L	BX571963	RPA2662	COG1197	329	3e-91
Transcription-repair coupling factor (superfamily II helicase)	L	BX571963	RPA2663	COG1197	1321	0.0
Transcription-repair coupling factor (superfamily II helicase)	L	BX571963	RPA4001	COG1197	38	0.003
Transcription-repair coupling factor (superfamily II helicase)	L	BX571963	RPA4343	COG1197	118	2e-27
Transposase and inactivated derivatives	L	BX571963	RPA0399	COG2801	58	8e-10
Transposase and inactivated derivatives	L	BX571963	RPA0770	COG2801	62	5e-11
Transposase and inactivated derivatives	L	BX571963	RPA0894	COG3547	64	1e-11
Transposase and inactivated derivatives	L	BX571963	RPA1293	COG3666	49	4e-07
Transposase and inactivated derivatives	L	BX571963	RPA1937	COG3547	65	5e-12
Transposase and inactivated derivatives	L	BX571963	RPA2980	COG2801	63	1e-11
Transposase and inactivated derivatives	L	BX571963	RPA3475	COG3547	65	5e-12
Transposase and inactivated derivatives	L	BX571963	RPA3580	COG2801	62	6e-11
Transposase and inactivated derivatives	L	BX571963	RPA3836	COG2801	62	6e-11
Transposase and inactivated derivatives IS30 family	L	BX571963	RPA0770	COG2826	52	7e-08
Transposase and inactivated derivatives IS30 family	L	BX571963	RPA2980	COG2826	53	2e-08
Transposase and inactivated derivatives IS30 family	L	BX571963	RPA3580	COG2826	51	7e-08
Transposase and inactivated derivatives IS30 family	L	BX571963	RPA3836	COG2826	51	7e-08
Transposase and inactivated derivatives IS5 family	L	BX571963	RPA1293	COG3039	61	8e-11
Uncharacterized protein related to Endonuclease III	L	BX571963	RPA0343	COG2231	78	6e-16
Uncharacterized protein related to Endonuclease III	L	BX571963	RPA4485	COG2231	50	3e-07
Uracil-DNA glycosylase	L	BX571963	RPA1036	COG1573	162	2e-41
Uracil-DNA glycosylase	L	BX571963	RPA1799	COG1573	156	3e-39
Uracil-DNA glycosylase	L	BX571963	RPA2690	COG1573	117	9e-28
Zn-finger domain associated with topoisomerase type I	L	BX571963	RPA3124	COG0551	47	5e-06

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