Genome Channel Computational Biosciences
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[space] Gene Channel Generation Microbial Gene Prediction System Grail (Microbial Gene Prediction System Internet Link) GrailEXP Genome Analysis Pipeline DomainParser PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit) [space]
Sponsored by: BER Logo
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Annotation created through the use of the following tools:
  1. Gene Models: Critica, Glimmer, and Generation
  2. tRNAs: tRNAscan-SE
  3. Gene Model products and functional assignments aided through the use of NCBI Blast, KEGG, COGs, InterPro, Pfam and TIGRfam
  4. TMHMM transmembrane prediction and Signal-P finding
  5. Transporters
  6. Visualiztion aided by Artemis

Rhodopseudomonas palustris CGA009 complete genome sequence and annotation.

Use * for a wildcard (e.g., amoc* to find amoC1, amoC2, & amoC3)
  • Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris
    Frank W Larimer, Patrick Chain, Loren Hauser, Jane Lamerdin, Stephanie Malfatti, Long Do, Miriam L Land, Dale A Pelletier, J Thomas Beatty, Andrew S Lang, F Robert Tabita, Janet L Gibson, Thomas E Hanson, Cedric Bobst, Janelle L Torres y Torres, Caroline Peres, Faith H Harrison, Jane Gibson & Caroline S Harwood
    Published online: Nature Biotechnology, 14 December 2003, doi:10.1038/nbt923 . 2004. Nature Biotechnology 22(1):55-61.

  • Supplementary table 1

  • Other sequenced strains:
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