files

Summary of the tRNAs found by tRNAscan-se

Amino Acid	Count
Ala	7
Arg	5
Asn	2
Asp	3
Cys	1
Gln	1
Glu	4
Gly	5
His	1
Ile	5
Leu	6
Lys	2
Met	5
Phe	1
Pro	4
Pseudo	0
Ser	4
Thr	2
Trp	1
Tyr	1
Undet	0
Val	4

List of tRNAs found by tRNAscan-se

Amino Acid	Anticodon	Contig	tRNA	tRNA Location	Intron Location	Cove Score	HMM Score
Ala	GGC	Contig8	21	2296343..2296418	0..0	87.89	70.77
Ala	GGC	Contig8	23	2296634..2296709	0..0	87.89	70.77
Ala	TGC	Contig8	35	5951434..5951359	0..0	93.85	76.74
Ala	TGC	Contig8	37	5426512..5426437	0..0	93.85	76.74
Ala	TGC	Contig8	3	773864 ..773939	0..0	93.85	76.74
Ala	TGC	Contig8	53	3850925..3850850	0..0	93.85	76.74
Ala	TGC	Contig8	9	966454 ..966529	0..0	93.85	76.74
Arg	ACG	Contig8	49	4233157..4233081	0..0	85.86	61.18
Arg	ACG	Contig8	50	4232993..4232917	0..0	85.86	61.18
Arg	CCG	Contig8	1	103774 ..103850	0..0	90.77	70.53
Arg	CCT	Contig8	51	4228891..4228815	0..0	81.80	63.16
Arg	TCT	Contig8	18	1981361..1981437	0..0	91.52	74.88
Asn	GTT	Contig8	4	835185 ..835260	0..0	87.87	59.12
Asn	GTT	Contig8	54	3706522..3706447	0..0	87.87	59.12
Asp	GTC	Contig8	14	1788313..1788389	0..0	94.67	75.49
Asp	GTC	Contig8	16	1876316..1876392	0..0	94.67	75.49
Asp	GTC	Contig8	17	1876508..1876584	0..0	94.67	75.49
Cys	GCA	Contig8	56	3433436..3433363	0..0	64.59	42.60
Gln	TTG	Contig8	61	1080162..1080088	0..0	66.82	40.36
Glu	TTC	Contig8	22	2296507..2296582	0..0	66.40	38.20
Glu	TTC	Contig8	24	2296756..2296831	0..0	66.40	38.20
Glu	TTC	Contig8	44	4292854..4292779	0..0	66.40	38.20
Glu	TTC	Contig8	46	4292600..4292525	0..0	66.40	38.20
Gly	CCC	Contig8	30	4736047..4736120	0..0	80.28	53.93
Gly	GCC	Contig8	45	4292776..4292701	0..0	93.74	68.41
Gly	GCC	Contig8	47	4292520..4292445	0..0	93.74	68.41
Gly	GCC	Contig8	55	3473825..3473750	0..0	93.74	68.41
Gly	TCC	Contig8	39	5420491..5420418	0..0	79.05	57.73
His	GTG	Contig8	19	1981489..1981564	0..0	86.22	66.88
Ile	GAT	Contig8	2	773757 ..773833	0..0	98.83	72.69
Ile	GAT	Contig8	34	5951565..5951489	0..0	98.83	72.69
Ile	GAT	Contig8	36	5426643..5426567	0..0	98.83	72.69
Ile	GAT	Contig8	52	3851056..3850980	0..0	98.83	72.69
Ile	GAT	Contig8	8	966347 ..966423	0..0	98.83	72.69
Leu	CAA	Contig8	60	1385236..1385152	0..0	72.37	41.35
Leu	CAG	Contig8	63	659712 ..659626	0..0	74.03	38.74
Leu	CAG	Contig8	64	659465 ..659379	0..0	74.03	38.74
Leu	GAG	Contig8	42	4976506..4976421	0..0	64.92	37.35
Leu	TAA	Contig8	28	3348041..3348126	0..0	76.36	46.02
Leu	TAG	Contig8	20	1981621..1981705	0..0	72.58	44.82
Lys	TTT	Contig8	10	1604319..1604394	0..0	92.89	74.31
Lys	TTT	Contig8	6	835372 ..835447	0..0	92.89	74.31
Met	CAT	Contig8	31	5506840..5506916	0..0	97.24	73.15
Met	CAT	Contig8	43	4976325..4976249	0..0	87.95	62.16
Met	CAT	Contig8	58	1582340..1582264	0..0	86.13	60.68
Met	CAT	Contig8	59	1582058..1581982	0..0	86.13	60.68
Met	CAT	Contig8	62	1034666..1034590	0..0	90.17	67.34
Phe	GAA	Contig8	32	5816375..5816450	0..0	89.80	64.91
Pro	GGG	Contig8	25	2523108..2523184	0..0	73.38	45.63
Pro	TGG	Contig8	11	1604490..1604566	0..0	83.78	65.88
Pro	TGG	Contig8	5	835290 ..835366	0..0	83.78	65.88
Pro	TGG	Contig8	7	835543 ..835619	0..0	83.78	65.88
Ser	CGA	Contig8	12	1744950..1745039	0..0	59.90	17.88
Ser	GCT	Contig8	48	4233357..4233267	0..0	66.78	38.96
Ser	GGA	Contig8	57	2161996..2161907	0..0	63.31	29.90
Ser	TGA	Contig8	29	3793910..3793997	0..0	66.84	31.00
Thr	GGT	Contig8	40	5420391..5420316	0..0	91.65	63.87
Thr	TGT	Contig8	33	5830736..5830811	0..0	94.51	76.49
Trp	CCA	Contig8	41	5420150..5420075	0..0	86.44	62.19
Tyr	GTA	Contig8	38	5420600..5420516	0..0	70.05	43.01
Val	GAC	Contig8	26	2809115..2809191	0..0	89.08	68.41
Val	GAC	Contig8	27	2810905..2810981	0..0	89.08	68.41
Val	TAC	Contig8	13	1788216..1788291	0..0	93.17	71.54
Val	TAC	Contig8	15	1876161..1876236	0..0	93.17	71.54

tRNA Models

Contig8.trna1 (103774-103850)	Length: 77 bp
Type: Arg	Anticodon: CCG at 35-37 (103808-103810)	Score: 90.77
HMM Sc=70.53	Sec struct Sc=20.24
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCACCAGTAGCTCAGCTGGAtAGAGTACTGCCCTCCGAAGGCAGGGGtCGTGGGTTCGAATCCCGCCTGGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna2 (773757-773833)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (773791-773793)	Score: 98.83
HMM Sc=72.69	Sec struct Sc=26.14
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCGAATCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna3 (773864-773939)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (773897-773899)	Score: 93.85
HMM Sc=76.74	Sec struct Sc=17.11
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna4 (835185-835260)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (835218-835220)	Score: 87.87
HMM Sc=59.12	Sec struct Sc=28.75
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: TCCGCGATAGCTCAGTTGGTAGAGCAAGTGACTGTTAATCACTGGGtCCCTGGTTCGAGTCCAGGTCGTGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna5 (835290-835366)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (835324-835326)	Score: 83.78
HMM Sc=65.88	Sec struct Sc=17.90
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGGTATAGCGCAGTCcGGTAGCGCGCCTGCTTTGGGAGCAGGATGtCAGGAGTTCGAATCCCCTTACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....

Contig8.trna6 (835372-835447)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (835405-835407)	Score: 92.89
HMM Sc=74.31	Sec struct Sc=18.58
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGtCGTAGGTTCGAATCCCACACGACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....

Contig8.trna7 (835543-835619)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (835577-835579)	Score: 83.78
HMM Sc=65.88	Sec struct Sc=17.90
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGGTATAGCGCAGTCcGGTAGCGCGCCTGCTTTGGGAGCAGGATGtCAGGAGTTCGAATCCCCTTACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....

Contig8.trna8 (966347-966423)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (966381-966383)	Score: 98.83
HMM Sc=72.69	Sec struct Sc=26.14
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCGAATCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna9 (966454-966529)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (966487-966489)	Score: 93.85
HMM Sc=76.74	Sec struct Sc=17.11
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna10 (1604319-1604394)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (1604352-1604354)	Score: 92.89
HMM Sc=74.31	Sec struct Sc=18.58
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGtCGTAGGTTCGAATCCCACACGACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....

Contig8.trna11 (1604490-1604566)	Length: 77 bp
Type: Pro	Anticodon: TGG at 35-37 (1604524-1604526)	Score: 83.78
HMM Sc=65.88	Sec struct Sc=17.90
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGGTATAGCGCAGTCcGGTAGCGCGCCTGCTTTGGGAGCAGGATGtCAGGAGTTCGAATCCCCTTACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>.>.......<.<<<<<<<<<<....

Contig8.trna12 (1744950-1745039)	Length: 90 bp
Type: Ser	Anticodon: CGA at 35-37 (1744984-1744986)	Score: 59.90
HMM Sc=17.88	Sec struct Sc=42.02
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    
Seq: GGAGAGATGCCAGAGTGGCcgAATGGGACGGATTCGAAATCCGTTGTACCTTCACCGGTACCTAGGGTTCGAATCCCTATCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

Contig8.trna13 (1788216-1788291)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1788249-1788251)	Score: 93.17
HMM Sc=71.54	Sec struct Sc=21.63
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGTGATTAGCTCAGCTGGGAGAGCAGCTGCCTTACAAGCAGCGGGtCGGCGGTTCGATCCCGTCATCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna14 (1788313-1788389)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1788347-1788349)	Score: 94.67
HMM Sc=75.49	Sec struct Sc=19.18
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna15 (1876161-1876236)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (1876194-1876196)	Score: 93.17
HMM Sc=71.54	Sec struct Sc=21.63
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGTGATTAGCTCAGCTGGGAGAGCAGCTGCCTTACAAGCAGCGGGtCGGCGGTTCGATCCCGTCATCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna16 (1876316-1876392)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1876350-1876352)	Score: 94.67
HMM Sc=75.49	Sec struct Sc=19.18
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna17 (1876508-1876584)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (1876542-1876544)	Score: 94.67
HMM Sc=75.49	Sec struct Sc=19.18
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCAGCGGTAGTTCAGTCGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCGCTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna18 (1981361-1981437)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (1981395-1981397)	Score: 91.52
HMM Sc=74.88	Sec struct Sc=16.64
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GTGCCCGTAGCTCAGCTGGAtAGAGCATCCGCCTTCTAAGCGGATGGtCGCAGGTTCGAGTCCTGCCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna19 (1981489-1981564)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (1981522-1981524)	Score: 86.22
HMM Sc=66.88	Sec struct Sc=19.34
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTGGGCGTAGCTCAGTTGGTAGAGCACAGGATTGTGACTCCTGCGGtCGTGGGTTCGAACCCCATCGTCCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna20 (1981621-1981705)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (1981655-1981657)	Score: 72.58
HMM Sc=44.82	Sec struct Sc=27.76
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCGGATGTGGTGGAATTGGTaGACACACTGGATTTAGGTTCCAGCGCCGCAAGGTGTGAGAGTTCGAGTCTCTCCGTCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

Contig8.trna21 (2296343-2296418)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (2296376-2296378)	Score: 87.89
HMM Sc=70.77	Sec struct Sc=17.12
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCTTTAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGtCAGCGGTTCGATCCCGCTAAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna22 (2296507-2296582)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (2296541-2296543)	Score: 66.40
HMM Sc=38.20	Sec struct Sc=28.20
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTCCCCTTCGTCTAGTGGCctAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig8.trna23 (2296634-2296709)	Length: 76 bp
Type: Ala	Anticodon: GGC at 34-36 (2296667-2296669)	Score: 87.89
HMM Sc=70.77	Sec struct Sc=17.12
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCTTTAGCTCAGCTGGGAGAGCGCCTGCATGGCATGCAGGAGGtCAGCGGTTCGATCCCGCTAAGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna24 (2296756-2296831)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (2296790-2296792)	Score: 66.40
HMM Sc=38.20	Sec struct Sc=28.20
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTCCCCTTCGTCTAGTGGCctAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig8.trna25 (2523108-2523184)	Length: 77 bp
Type: Pro	Anticodon: GGG at 35-37 (2523142-2523144)	Score: 73.38
HMM Sc=45.63	Sec struct Sc=27.75
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGGGGCGTAGCGCAGTCcGGTAGCGCACTAGCATGGGGTGCTAGGGGtCGAGTGTTCGAATCACTCCGTCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna26 (2809115-2809191)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (2809149-2809151)	Score: 89.08
HMM Sc=68.41	Sec struct Sc=20.67
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: AGGCACGTAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAGTCCAATCGCGCCTACCA
Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

Contig8.trna27 (2810905-2810981)	Length: 77 bp
Type: Val	Anticodon: GAC at 35-37 (2810939-2810941)	Score: 89.08
HMM Sc=68.41	Sec struct Sc=20.67
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: AGGCACGTAGCTCAGTTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAGTCCAATCGCGCCTACCA
Str: >>>>.>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

Contig8.trna28 (3348041-3348126)	Length: 86 bp
Type: Leu	Anticodon: TAA at 35-37 (3348075-3348077)	Score: 76.36
HMM Sc=46.02	Sec struct Sc=30.34
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCCCGATGGCGAAATTGGTaGACGCAAGGGACTTAAAATCCCTCGTCCTTTGGACGTGCCGGTTCGACCCCGGCTCGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>...<<<<..>>>>>.......<<<<<<<<<<<<....

Contig8.trna29 (3793910-3793997)	Length: 88 bp
Type: Ser	Anticodon: TGA at 35-37 (3793944-3793946)	Score: 66.84
HMM Sc=31.00	Sec struct Sc=35.84
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *  
Seq: GGAGGTATGGCCGAGTGGTttAAGGCAGCAGTCTTGAAAACTGCCGACTGTAAcAGGTcCTAGAGTTCGAATCTCTATGCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>.....<<....>>>>>.......<<<<<<<<<<<<....

Contig8.trna30 (4736047-4736120)	Length: 74 bp
Type: Gly	Anticodon: CCC at 33-35 (4736079-4736081)	Score: 80.28
HMM Sc=53.93	Sec struct Sc=26.35
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTATAGTTTAGTGGTAAAACGAAAGCTTCCCAAGCTTTAGtTGAGGGTTCGATTCCCTCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig8.trna31 (5506840-5506916)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (5506874-5506876)	Score: 97.24
HMM Sc=73.15	Sec struct Sc=24.09
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGCCCATAGCTCAGTTGGTtAGAGCAGAGGACTCATAATCCTTTGGtCCACGGTTCGAGTCCGTGTGGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna32 (5816375-5816450)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (5816408-5816410)	Score: 89.80
HMM Sc=64.91	Sec struct Sc=24.89
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCCAGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGtCGGCGGTTCGATTCCGTCTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna33 (5830736-5830811)	Length: 76 bp
Type: Thr	Anticodon: TGT at 34-36 (5830769-5830771)	Score: 94.51
HMM Sc=76.49	Sec struct Sc=18.02
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCGGTATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGtCCCGGGTTCGACTCCTGGTGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna34 (5951565-5951489)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (5951531-5951529)	Score: 98.83
HMM Sc=72.69	Sec struct Sc=26.14
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCGAATCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna35 (5951434-5951359)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (5951401-5951399)	Score: 93.85
HMM Sc=76.74	Sec struct Sc=17.11
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna36 (5426643-5426567)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (5426609-5426607)	Score: 98.83
HMM Sc=72.69	Sec struct Sc=26.14
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCGAATCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna37 (5426512-5426437)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (5426479-5426477)	Score: 93.85
HMM Sc=76.74	Sec struct Sc=17.11
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna38 (5420600-5420516)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (5420566-5420564)	Score: 70.05
HMM Sc=43.01	Sec struct Sc=27.04
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGAGGGGTTCCCGAGCGGCcaAAGGGATCAGACTGTAAATCTGACGTCTACGACTtCGAAGGTTCGAATCCTTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

Contig8.trna39 (5420491-5420418)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (5420459-5420457)	Score: 79.05
HMM Sc=57.73	Sec struct Sc=21.32
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTATAGTTTAGTGGTAGAACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig8.trna40 (5420391-5420316)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (5420358-5420356)	Score: 91.65
HMM Sc=63.87	Sec struct Sc=27.78
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCTCTTGTAGCTCAGTTGGTAGAGCACACCCTTGGTAAGGGTGAGGtCAGCGGTTCAAATCCGCTCAAGAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna41 (5420150-5420075)	Length: 76 bp
Type: Trp	Anticodon: CCA at 34-36 (5420117-5420115)	Score: 86.44
HMM Sc=62.19	Sec struct Sc=24.25
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: AGGTCAGTAGCTCAATTGGCAGAGCGACGGTCTCCAAAACCGTAGGtTGGGGGTTCGATTCCCTCCTGACCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna42 (4976506-4976421)	Length: 86 bp
Type: Leu	Anticodon: GAG at 35-37 (4976472-4976470)	Score: 64.92
HMM Sc=37.35	Sec struct Sc=27.57
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCCGAGGTGGTGGAATTGGTaGACACGCAACCTTGAGGTGGTTGTGCCCATAGGGTGTAGGGGTTCGAGTCCCCTTCTCGGTACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>....<<...>>>>>.......<<<<<<<<<<<<....

Contig8.trna43 (4976325-4976249)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (4976291-4976289)	Score: 87.95
HMM Sc=62.16	Sec struct Sc=25.79
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGCGGGGTGGAGCAGTTtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTTGGTTCAAATCCAGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig8.trna44 (4292854-4292779)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (4292820-4292818)	Score: 66.40
HMM Sc=38.20	Sec struct Sc=28.20
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTCCCCTTCGTCTAGTGGCctAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig8.trna45 (4292776-4292701)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (4292743-4292741)	Score: 93.74
HMM Sc=68.41	Sec struct Sc=25.33
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna46 (4292600-4292525)	Length: 76 bp
Type: Glu	Anticodon: TTC at 35-37 (4292566-4292564)	Score: 66.40
HMM Sc=38.20	Sec struct Sc=28.20
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTCCCCTTCGTCTAGTGGCctAGGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTAGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig8.trna47 (4292520-4292445)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (4292487-4292485)	Score: 93.74
HMM Sc=68.41	Sec struct Sc=25.33
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna48 (4233357-4233267)	Length: 91 bp
Type: Ser	Anticodon: GCT at 35-37 (4233323-4233321)	Score: 66.78
HMM Sc=38.96	Sec struct Sc=27.82
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAGAGCTGGCCGAGTGGCcgAAGGCGCTCCCCTGCTAAGGGAGTACACCTCAAaAGGGTGtCGGGGGTTCGAATCCCCCGTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>.>.......<.<<...>>>>>.......<<<<<<<<<<<<....

Contig8.trna49 (4233157-4233081)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (4233123-4233121)	Score: 85.86
HMM Sc=61.18	Sec struct Sc=24.68
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCACTCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCGGtCACAGGTTCGAATCCTGTCGAGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna50 (4232993-4232917)	Length: 77 bp
Type: Arg	Anticodon: ACG at 35-37 (4232959-4232957)	Score: 85.86
HMM Sc=61.18	Sec struct Sc=24.68
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCACTCGTAGCTCAGCTGGAtAGAGTACTCGGCTACGAACCGAGCGGtCACAGGTTCGAATCCTGTCGAGTGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna51 (4228891-4228815)	Length: 77 bp
Type: Arg	Anticodon: CCT at 35-37 (4228857-4228855)	Score: 81.80
HMM Sc=63.16	Sec struct Sc=18.64
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GTCTCAGTAGCTCAATTGGAtAGAGCATCCCCCTCCTAAGGGGAAGGtTGCAGGTTCGAACCCCGCCTGGGACACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....

Contig8.trna52 (3851056-3850980)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (3851022-3851020)	Score: 98.83
HMM Sc=72.69	Sec struct Sc=26.14
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCGCACCCCTGATAAGGGTGAGGtCGGCAGTTCGAATCTGCCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna53 (3850925-3850850)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (3850892-3850890)	Score: 93.85
HMM Sc=76.74	Sec struct Sc=17.11
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGtCAGCGGTTCGATCCCGCTTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna54 (3706522-3706447)	Length: 76 bp
Type: Asn	Anticodon: GTT at 34-36 (3706489-3706487)	Score: 87.87
HMM Sc=59.12	Sec struct Sc=28.75
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: TCCGCGATAGCTCAGTTGGTAGAGCAAGTGACTGTTAATCACTGGGtCCCTGGTTCGAGTCCAGGTCGTGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna55 (3473825-3473750)	Length: 76 bp
Type: Gly	Anticodon: GCC at 34-36 (3473792-3473790)	Score: 93.74
HMM Sc=68.41	Sec struct Sc=25.33
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGCGAGTTCGAGTCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna56 (3433436-3433363)	Length: 74 bp
Type: Cys	Anticodon: GCA at 33-35 (3433404-3433402)	Score: 64.59
HMM Sc=42.60	Sec struct Sc=21.99
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GGCCGAGTAGCAAAATGGTTATGCAGCGGATTGCAAATCCGCCTACGCCGGTTCGATTCCGACCTCGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>.>>>.......<<<.<<<<<<<<....

Contig8.trna57 (2161996-2161907)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (2161962-2161960)	Score: 63.31
HMM Sc=29.90	Sec struct Sc=33.41
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    
Seq: GGTGAGGTGTCCGAGTGGCttAAGGAGCACGCCTGGAAAGTGTGTATACAAGAAATTGTATCGAGGGTTCGAATCCCTCCTTCACCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

Contig8.trna58 (1582340-1582264)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1582306-1582304)	Score: 86.13
HMM Sc=60.68	Sec struct Sc=25.45
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTCGGTTCAAATCCGGCTCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig8.trna59 (1582058-1581982)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1582024-1582022)	Score: 86.13
HMM Sc=60.68	Sec struct Sc=25.45
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: CGCGGGATGGAGCAGTCtGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTCGGTTCAAATCCGGCTCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig8.trna60 (1385236-1385152)	Length: 85 bp
Type: Leu	Anticodon: CAA at 35-37 (1385202-1385200)	Score: 72.37
HMM Sc=41.35	Sec struct Sc=31.02
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCCCTGATGGCGGAATTGGTaGACGCGGCGGATTCAAAATCCGTTTTCGAAAGAAGTGGGAGTTCGATTCTCCCTCGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

Contig8.trna61 (1080162-1080088)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (1080130-1080128)	Score: 66.82
HMM Sc=40.36	Sec struct Sc=26.46
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: AGGGGCGTCGCCAAGCGGTAAGGCAGCAGGTTTTGATCCTGCCATgCGTTGGTTCGAATCCAGCCGCCCCTGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna62 (1034666-1034590)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (1034632-1034630)	Score: 90.17
HMM Sc=67.34	Sec struct Sc=22.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCTACATAGCTCAGTTGGTtAGAGCATAGCATTCATAATGCTGGGGtCCGGGGTTCAAGTCCCTGTGTAGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig8.trna63 (659712-659626)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (659678-659676)	Score: 74.03
HMM Sc=38.74	Sec struct Sc=35.29
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCCCAGATGGTGAAATTGGTaGACACGCCAGCTTCAGGTGCTGGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTTCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

Contig8.trna64 (659465-659379)	Length: 87 bp
Type: Leu	Anticodon: CAG at 35-37 (659431-659429)	Score: 74.03
HMM Sc=38.74	Sec struct Sc=35.29
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCCCAGATGGTGAAATTGGTaGACACGCCAGCTTCAGGTGCTGGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTTCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....

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