Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 4 |
| Asn | 2 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 2 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 1 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig1 | 15 | 1736852..1736924 | 0..0 | 81.21 | 64.88 |
| Ala | TGC | Contig1 | 21 | 1277035..1276963 | 0..0 | 85.92 | 66.99 |
| Ala | TGC | Contig1 | 6 | 617973 ..618045 | 0..0 | 85.92 | 66.99 |
| Arg | ACG | Contig1 | 27 | 1147745..1147672 | 0..0 | 69.64 | 55.62 |
| Arg | CCG | Contig1 | 42 | 389197 ..389125 | 0..0 | 49.49 | 30.49 |
| Arg | CCT | Contig1 | 3 | 393198 ..393270 | 0..0 | 49.56 | 27.06 |
| Arg | TCT | Contig1 | 14 | 894078 ..894151 | 0..0 | 74.83 | 57.12 |
| Asn | GTT | Contig1 | 18 | 1765020..1764949 | 0..0 | 75.14 | 48.02 |
| Asn | GTT | Contig1 | 1 | 184055 ..184127 | 0..0 | 84.34 | 59.85 |
| Asp | GTC | Contig1 | 33 | 1147086..1147012 | 0..0 | 68.31 | 45.61 |
| Cys | GCA | Contig1 | 9 | 763895 ..763965 | 0..0 | 67.23 | 43.48 |
| Gln | CTG | Contig1 | 20 | 1540832..1540760 | 0..0 | 67.35 | 38.38 |
| Gln | TTG | Contig1 | 17 | 1767630..1767702 | 0..0 | 62.95 | 32.31 |
| Glu | CTC | Contig1 | 4 | 490141 ..490212 | 0..0 | 53.28 | 26.63 |
| Glu | TTC | Contig1 | 8 | 657699 ..657773 | 0..0 | 63.38 | 29.46 |
| Gly | CCC | Contig1 | 39 | 729969 ..729898 | 0..0 | 64.93 | 44.34 |
| Gly | GCC | Contig1 | 25 | 1147988..1147917 | 0..0 | 70.17 | 53.61 |
| Gly | TCC | Contig1 | 35 | 1146887..1146817 | 0..0 | 64.44 | 44.16 |
| His | GTG | Contig1 | 12 | 864428 ..864501 | 0..0 | 55.08 | 29.44 |
| Ile | GAT | Contig1 | 36 | 1146814..1146741 | 0..0 | 71.97 | 47.71 |
| Leu | AAG | Contig1 | 22 | 1263827..1263744 | 0..0 | 59.29 | 36.57 |
| Leu | CAA | Contig1 | 13 | 864540 ..864623 | 0..0 | 66.98 | 36.51 |
| Leu | CAG | Contig1 | 10 | 798601 ..798684 | 0..0 | 59.64 | 24.91 |
| Leu | TAA | Contig1 | 26 | 1147895..1147812 | 0..0 | 65.16 | 36.47 |
| Leu | TAG | Contig1 | 40 | 431499 ..431415 | 0..0 | 60.12 | 31.48 |
| Lys | CTT | Contig1 | 43 | 97869 ..97797 | 0..0 | 83.71 | 58.11 |
| Lys | TTT | Contig1 | 7 | 646054 ..646130 | 0..0 | 76.89 | 51.15 |
| Met | CAT | Contig1 | 29 | 1147512..1147439 | 0..0 | 76.28 | 64.14 |
| Met | CAT | Contig1 | 30 | 1147425..1147352 | 0..0 | 89.69 | 63.60 |
| Met | CAT | Contig1 | 32 | 1147216..1147143 | 0..0 | 70.07 | 43.49 |
| Phe | GAA | Contig1 | 34 | 1146980..1146908 | 0..0 | 74.53 | 61.77 |
| Pro | CGG | Contig1 | 19 | 1556359..1556286 | 0..0 | 83.58 | 61.86 |
| Pro | TGG | Contig1 | 28 | 1147607..1147534 | 0..0 | 87.20 | 64.68 |
| Ser | AGA | Contig1 | 5 | 512229 ..512316 | 0..0 | 61.06 | 20.96 |
| Ser | CGA | Contig1 | 38 | 901999 ..901908 | 0..0 | 72.83 | 37.61 |
| Ser | GCT | Contig1 | 37 | 1146661..1146569 | 0..0 | 60.01 | 27.59 |
| Ser | TGA | Contig1 | 31 | 1147332..1147243 | 0..0 | 68.20 | 31.66 |
| Thr | AGT | Contig1 | 41 | 429627 ..429554 | 0..0 | 87.74 | 65.34 |
| Thr | CGT | Contig1 | 2 | 184194 ..184266 | 0..0 | 80.81 | 61.36 |
| Thr | TGT | Contig1 | 24 | 1148081..1148009 | 0..0 | 87.52 | 64.37 |
| Trp | CCA | Contig1 | 11 | 864352 ..864425 | 0..0 | 64.29 | 36.43 |
| Tyr | GTA | Contig1 | 16 | 1767500..1767582 | 0..0 | 69.86 | 41.32 |
| Val | TAC | Contig1 | 23 | 1148192..1148120 | 0..0 | 84.75 | 68.31 |
tRNA Models
Contig1.trna1 (184055-184127) Length: 73 bp
Type: Asn Anticodon: GTT at 34-36 (184088-184090) Score: 84.34
HMM Sc=59.85 Sec struct Sc=24.49
* | * | * | * | * | * | * |
Seq: TCCGACTTAGCTCAGTTGGTAGAGCGCCTGACTGTTAATCAGGTTGtCGTCGGTTCGAGCCCGACAGTCGGAG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna2 (184194-184266) Length: 73 bp
Type: Thr Anticodon: CGT at 34-36 (184227-184229) Score: 80.81
HMM Sc=61.36 Sec struct Sc=19.45
* | * | * | * | * | * | * |
Seq: GCCGACTTAGCTCAGTTGGTAGAGCATCGGTATCGTAAACCGGGGGtCGACGGTTCGAACCCGTCAGTCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna3 (393198-393270) Length: 73 bp
Type: Arg Anticodon: CCT at 35-37 (393232-393234) Score: 49.56
HMM Sc=27.06 Sec struct Sc=22.50
* | * | * | * | * | * | * |
Seq: GGCCTAATAGTTTAACAGGAtAAAACACGGACCTCCTAAGTCTAAGcTCCCGGTTCGAGTCCGGGTTGGGCCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna4 (490141-490212) Length: 72 bp
Type: Glu Anticodon: CTC at 34-36 (490174-490176) Score: 53.28
HMM Sc=26.63 Sec struct Sc=26.65
* | * | * | * | * | * | * |
Seq: GGCTCCATGGTCAAGTGGCtAAGACGTCGCGTTCTCAGCGCGGAAtCATGGGTTCGATCCCCATTGGAGCTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig1.trna5 (512229-512316) Length: 88 bp
Type: Ser Anticodon: AGA at 35-37 (512263-512265) Score: 61.06
HMM Sc=20.96 Sec struct Sc=40.10
* | * | * | * | * | * | * | * | *
Seq: GGATGGATACCCAAGTGGCtgAAGGGGTCGGTCTAGAAAACCGATAGGTCGTGTATGCGGCGCGAGAGTTCGAATCTCTCTCCATCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig1.trna6 (617973-618045) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (618006-618008) Score: 85.92
HMM Sc=66.99 Sec struct Sc=18.93
* | * | * | * | * | * | * |
Seq: GGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGAACCCGATATTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna7 (646054-646130) Length: 77 bp
Type: Lys Anticodon: TTT at 35-37 (646088-646090) Score: 76.89
HMM Sc=51.15 Sec struct Sc=25.74
* | * | * | * | * | * | * | *
Seq: GCCCCTTTAACTCAGCTGGTtAGAGTAGGGGATTTTTAATCCCAAGGtCCCCGGTTCGAGTCCGGGAGGGGGCACTA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig1.trna8 (657699-657773) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (657732-657734) Score: 63.38
HMM Sc=29.46 Sec struct Sc=33.92
* | * | * | * | * | * | * |
Seq: GGCTCGATGGTCAAGCGGCtAAGACGTCGCCCTTTCACGGCGAAAtCTCGGGTTCGATTCCCGATCGAGCTACTA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig1.trna9 (763895-763965) Length: 71 bp
Type: Cys Anticodon: GCA at 33-35 (763927-763929) Score: 67.23
HMM Sc=43.48 Sec struct Sc=23.75
* | * | * | * | * | * | * |
Seq: GGTGGTATAGCCAAGCGGTAAGGCGATGGTCTGCAAAACCGTTAtCACGGGTTCGATTCCCGTTACCACCT
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig1.trna10 (798601-798684) Length: 84 bp
Type: Leu Anticodon: CAG at 35-37 (798635-798637) Score: 59.64
HMM Sc=24.91 Sec struct Sc=34.73
* | * | * | * | * | * | * | * |
Seq: GCCCCAATGGCGGAATTGGCaGACGCGCAGCGTTCAGGTCGCTGTGAGAGCAATCTCGTGCAGGTTCGACTCCTGTTTGGGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig1.trna11 (864352-864425) Length: 74 bp
Type: Trp Anticodon: CCA at 33-35 (864384-864386) Score: 64.29
HMM Sc=36.43 Sec struct Sc=27.86
* | * | * | * | * | * | * |
Seq: AGGGATATAGTATAACGGTAGTACAGCGGTCTCCAAAACCGTTAATGGGGGTTCGATTCCCTCTATCCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig1.trna12 (864428-864501) Length: 74 bp
Type: His Anticodon: GTG at 35-37 (864462-864464) Score: 55.08
HMM Sc=29.44 Sec struct Sc=25.64
* | * | * | * | * | * | * |
Seq: GCGGTACTGGTGAAGTTGGTtAACACACCGGTTTGTGGTACCGGCACgCGCGGGTTCGAGTCCCACGTACCGCC
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
Contig1.trna13 (864540-864623) Length: 84 bp
Type: Leu Anticodon: CAA at 35-37 (864574-864576) Score: 66.98
HMM Sc=36.51 Sec struct Sc=30.47
* | * | * | * | * | * | * | * |
Seq: GCCGTTGTGGCGGAATTGGCaGACGCGCTGGACTCAAAATCCAGTGGTGGCAACACCGTGTGGGTTCGACTCCCACCGACGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig1.trna14 (894078-894151) Length: 74 bp
Type: Arg Anticodon: TCT at 35-37 (894112-894114) Score: 74.83
HMM Sc=57.12 Sec struct Sc=17.71
* | * | * | * | * | * | * |
Seq: GCGGAAGTGGCTCAACTGGAtAGAGCATCGGAGTTCTAATCCGCAGGtTGTGGGTTCGAGTCCCACCTTCCGCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<.
Contig1.trna15 (1736852-1736924) Length: 73 bp
Type: Ala Anticodon: CGC at 34-36 (1736885-1736887) Score: 81.21
HMM Sc=64.88 Sec struct Sc=16.33
* | * | * | * | * | * | * |
Seq: GGGCGTTTAGCTCAGTTGGGAGAGCGCTGCCTTCGCATGGCAGAGGtCACGGGTTCGAATCCCGTAATGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna16 (1767500-1767582) Length: 83 bp
Type: Tyr Anticodon: GTA at 35-37 (1767534-1767536) Score: 69.86
HMM Sc=41.32 Sec struct Sc=28.54
* | * | * | * | * | * | * | * |
Seq: GGGAGTGTAGCGAAGTGGTtaAACGCTGCGGACTGTAAATCCGCCCTCTTACGAGTtCGTAGGTTCGAATCCTACCGCTCCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<.
Contig1.trna17 (1767630-1767702) Length: 73 bp
Type: Gln Anticodon: TTG at 34-36 (1767663-1767665) Score: 62.95
HMM Sc=32.31 Sec struct Sc=30.64
* | * | * | * | * | * | * |
Seq: TGCCCCATAGCCAAGTCGGTAAGGCAGCGGTTTTTGGTACCGCCACgCGCTGGTTCGAGTCCAGCTGGGGCAA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna18 (1765020-1764949) Length: 72 bp
Type: Asn Anticodon: GTT at 33-35 (1764988-1764986) Score: 75.14
HMM Sc=48.02 Sec struct Sc=27.12
* | * | * | * | * | * | * |
Seq: TGTCTAGTAGTTCAGTGGTAGAACGCCGCACTGTTAATGCGGATGtCGCTGGTTCGAACCCAGCCTGGACAG
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna19 (1556359-1556286) Length: 74 bp
Type: Pro Anticodon: CGG at 35-37 (1556325-1556323) Score: 83.58
HMM Sc=61.86 Sec struct Sc=21.72
* | * | * | * | * | * | * |
Seq: CGGGATGTAGCTCAGCTtGGTAGAGCACCACGTTCGGGACGTGGGGGtCGTGGGTTCGAATCCCGCCATCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna20 (1540832-1540760) Length: 73 bp
Type: Gln Anticodon: CTG at 34-36 (1540799-1540797) Score: 67.35
HMM Sc=38.38 Sec struct Sc=28.97
* | * | * | * | * | * | * |
Seq: TGCCCTTTGGCCAAGTTGGTAAGGCAATGGCTTCTGGTGCCATCATgCGCTGGTTCGAGTCCAGCAAGGGCAA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna21 (1277035-1276963) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (1277002-1277000) Score: 85.92
HMM Sc=66.99 Sec struct Sc=18.93
* | * | * | * | * | * | * |
Seq: GGGGAATTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGAACCCGATATTCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna22 (1263827-1263744) Length: 84 bp
Type: Leu Anticodon: AAG at 35-37 (1263793-1263791) Score: 59.29
HMM Sc=36.57 Sec struct Sc=22.72
* | * | * | * | * | * | * | * |
Seq: GCGGACGTGGCGGAATTGGCaGACGCGCAGGATTAAGGATCCTGTGGTAGAAATACCGTATGGGTTCGACTCCCATCGCCCGCA
Str: >>>>.>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<.<<<<.
Contig1.trna23 (1148192-1148120) Length: 73 bp
Type: Val Anticodon: TAC at 34-36 (1148159-1148157) Score: 84.75
HMM Sc=68.31 Sec struct Sc=16.44
* | * | * | * | * | * | * |
Seq: GGACGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGGAGGtCACAGGTTCGATCCCTGTAGCGTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna24 (1148081-1148009) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (1148048-1148046) Score: 87.52
HMM Sc=64.37 Sec struct Sc=23.15
* | * | * | * | * | * | * |
Seq: GCCGACTTAGCTCAGTTGGCAGAGCACCGCTCTTGTAAAGCGGGGGtCGGAGGTTCGAACCCTCTAGTCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna25 (1147988-1147917) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (1147956-1147954) Score: 70.17
HMM Sc=53.61 Sec struct Sc=16.56
* | * | * | * | * | * | * |
Seq: GCGAACGTAGTTCAGTGGTAGAACATCACCTTGCCATGGTGGGGGtCACGGGTTCGAGTCCCGCCGTTCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<.
Contig1.trna26 (1147895-1147812) Length: 84 bp
Type: Leu Anticodon: TAA at 35-37 (1147861-1147859) Score: 65.16
HMM Sc=36.47 Sec struct Sc=28.69
* | * | * | * | * | * | * | * |
Seq: GCCGGCGTGGCGGAATAGGCaGACGCACAGGACTTAAAATCCTGCGGTAGTGATACCGTCCCGGTTCGATCCCGGGCGCCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<.
Contig1.trna27 (1147745-1147672) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (1147711-1147709) Score: 69.64
HMM Sc=55.62 Sec struct Sc=14.02
* | * | * | * | * | * | * |
Seq: GCACCATTAGCGCAATTGGAtAGAGCGTCTGACTACGAATCAGGAGGtTGTAGGTTCGACTCCTACATGGTGCA
Str: >>>>>>>..>>.>.........<.<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna28 (1147607-1147534) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (1147573-1147571) Score: 87.20
HMM Sc=64.68 Sec struct Sc=22.52
* | * | * | * | * | * | * |
Seq: CGGGACATAGCTCAGTTtGGTAGAGCACCTGGTTTGGGACCAGGGGGtCGCTGGTTCGAATCCAGTTGTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna29 (1147512-1147439) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1147478-1147476) Score: 76.28
HMM Sc=64.14 Sec struct Sc=12.14
* | * | * | * | * | * | * |
Seq: CGCGGTGTAGCTCAGCTGGCtAGAGCGTCCGGTTCATACCCGGGAGGtCGAGGGTTCGATTCCCCCCGCCGCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<.
Contig1.trna30 (1147425-1147352) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1147391-1147389) Score: 89.69
HMM Sc=63.60 Sec struct Sc=26.09
* | * | * | * | * | * | * |
Seq: GGACCTTTAGCTCAGTTGGTtAGAGCAAGCGGCTCATAACCGCTCGGtCGCTGGTTCGAGTCCAGCAAGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna31 (1147332-1147243) Length: 90 bp
Type: Ser Anticodon: TGA at 37-39 (1147296-1147294) Score: 68.20
HMM Sc=31.66 Sec struct Sc=36.54
* | * | * | * | * | * | * | * | *
Seq: GGAGAATTACCCAAGTCtGGCtgAAGGGAACGGTCTTGAAAACCGTCAGGTCGGGAAACCGGCGCAGAGGTTCAAATCCTCTATTCTCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig1.trna32 (1147216-1147143) Length: 74 bp
Type: Met Anticodon: CAT at 35-37 (1147182-1147180) Score: 70.07
HMM Sc=43.49 Sec struct Sc=26.58
* | * | * | * | * | * | * |
Seq: CGCGGGGTAGAGCAGTCtGGTAGCTCGTCAGGCCCATAACCTGAAGGtCGTTGGTTCAAATCCAGCCCCCGCAA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<..
Contig1.trna33 (1147086-1147012) Length: 75 bp
Type: Asp Anticodon: GTC at 36-38 (1147051-1147049) Score: 68.31
HMM Sc=45.61 Sec struct Sc=22.70
* | * | * | * | * | * | * |
Seq: GGTTCCATGGTCTAGTTGGTctAGGACGCCTCCCTGTCACGGAGGAGAtCGCGGGTTCAAACCCCGCTGGGACCG
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna34 (1146980-1146908) Length: 73 bp
Type: Phe Anticodon: GAA at 34-36 (1146947-1146945) Score: 74.53
HMM Sc=61.77 Sec struct Sc=12.76
* | * | * | * | * | * | * |
Seq: GGCTCGGTAGCTCAGTTGGTAGAGCAAAGGATTGAAGCTCCTTGTGtCGACGGTTCGATTCCGCCCCGCGCCA
Str: >>>.>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<.<<<.
Contig1.trna35 (1146887-1146817) Length: 71 bp
Type: Gly Anticodon: TCC at 33-35 (1146855-1146853) Score: 64.44
HMM Sc=44.16 Sec struct Sc=20.28
* | * | * | * | * | * | * |
Seq: GCGAATGTAGCTCAATGGTAGAGCTCCAGCCTTCCAAGCTGGCTACGCGGGTCCGATTCCCGTCATTCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig1.trna36 (1146814-1146741) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (1146780-1146778) Score: 71.97
HMM Sc=47.71 Sec struct Sc=24.26
* | * | * | * | * | * | * |
Seq: GGACTATTAGCTCAGCTGGTtAGAGCGCTGTGTTGATAACGCAGAGGtCCCAGGTCCGAGTCCTGGATGGTCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna37 (1146661-1146569) Length: 93 bp
Type: Ser Anticodon: GCT at 35-37 (1146627-1146625) Score: 60.01
HMM Sc=27.59 Sec struct Sc=32.42
* | * | * | * | * | * | * | * | * |
Seq: GGAGATTTACTCAAGAGGCtgAAGAGGCGCCCTTGCTAAGGGTGTAGGTCGGTTTAtCCCGGCGCGAGGGTTCGAATCCCTCAATCTCCATCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>......<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig1.trna38 (901999-901908) Length: 92 bp
Type: Ser Anticodon: CGA at 33-35 (901967-901965) Score: 72.83
HMM Sc=37.61 Sec struct Sc=35.22
* | * | * | * | * | * | * | * | * |
Seq: GGAGACATGGCAGAGTGGTAATGCAGCGGACTCGAAATCCGCCGAACCGATGTAGaATCGGCGCCGGGGTTCGAATCCCCGTGTCTCCTTCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.....<<<<<...>>>>>.......<<<<<<<<<<<<....
Contig1.trna39 (729969-729898) Length: 72 bp
Type: Gly Anticodon: CCC at 33-35 (729937-729935) Score: 64.93
HMM Sc=44.34 Sec struct Sc=20.59
* | * | * | * | * | * | * |
Seq: GCGAACATAGTTCAGTGGTAGAACGCCACCTTCCCAAGGTGGAGGtCACGGGTCCGATCCCCGCTGTTCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<......>>>>.......<<<<.<<<<<<<.
Contig1.trna40 (431499-431415) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (431465-431463) Score: 60.12
HMM Sc=31.48 Sec struct Sc=28.64
* | * | * | * | * | * | * | * |
Seq: GCGGATGTGGCGGAACTGGCaGACGCGCAGGATTTAGGTTCCTGTGAGGAAACTCATGCAGGTTCGATCCCTGTCATCCGCACTA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig1.trna41 (429627-429554) Length: 74 bp
Type: Thr Anticodon: AGT at 35-37 (429593-429591) Score: 87.74
HMM Sc=65.34 Sec struct Sc=22.40
* | * | * | * | * | * | * |
Seq: GCCGACTTAGCTCAGTTGGCtAGAGCACTTCACTAGTAATGAAGGGGtCGGAGGTTCGAATCCTCTAGTCGGCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig1.trna42 (389197-389125) Length: 73 bp
Type: Arg Anticodon: CCG at 35-37 (389163-389161) Score: 49.49
HMM Sc=30.49 Sec struct Sc=19.00
* | * | * | * | * | * | * |
Seq: GCGCGAGTAGTGTAATGGAtcATCACGTAGGATTCCGGTTCCTGAGATGAGGGTTCGATTCCCTCCTTGCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig1.trna43 (97869-97797) Length: 73 bp
Type: Lys Anticodon: CTT at 34-36 (97836-97834) Score: 83.71
HMM Sc=58.11 Sec struct Sc=25.60
* | * | * | * | * | * | * |
Seq: GGATGCTTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGGGtCCAGGGTTCGATCCCCTGAGCATCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
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