Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-09-25
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig1	RNAmmer-1.2	rRNA	621223	621338	65.6	+	.	5s_rRNA	
 Contig1	RNAmmer-1.2	rRNA	1273670	1273785	65.6	-	.	5s_rRNA	
 Contig1	RNAmmer-1.2	rRNA	618261	621147	3245.6	+	.	23s_rRNA	
 Contig1	RNAmmer-1.2	rRNA	1273861	1276747	3245.6	-	.	23s_rRNA	
 Contig1	RNAmmer-1.2	rRNA	616317	617868	1802.8	+	.	16s_rRNA	
 Contig1	RNAmmer-1.2	rRNA	1277140	1278691	1802.8	-	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig1_621223-621338_DIR+ /molecule=5s_rRNA /score=65.6
 TCGTGTTAATTCCGATGAGGCCACACCTGTTCCCATTCCGAACACAGAAGTTAAGCTTGT
 CAGGGCCCAAAGTAGTTACAGGAACGCCTGTTGCAAGGTTAGGTCGATGCGATGCA
 >rRNA_Contig1_1273670-1273785_DIR- /molecule=5s_rRNA /score=65.6
 TCGTGTTAATTCCGATGAGGCCACACCTGTTCCCATTCCGAACACAGAAGTTAAGCTTGT
 CAGGGCCCAAAGTAGTTACAGGAACGCCTGTTGCAAGGTTAGGTCGATGCGATGCA
 >rRNA_Contig1_618261-621147_DIR+ /molecule=23s_rRNA /score=3245.6
 TTAAGTTAATAAGGGCGCATGGTGGATGCCTTGGCACTAGAAGGCGATGAAGGACGTGAC
 TAACTACGATATGCCTCGGTTAGCTGTAAGTAAGCTTACCCGGGGGTTTCCGAATGGGGC
 AACCCGATCTTAATGATCATCATCTTTTTGAATTCATAGATTAGATGAAGCAAACGCTGT
 GAACTGAAACATCTAAGTAGCAGTAGGAAAGTAAAGAAATTTCGATTCCGTCAGTAGCGG
 CGAGCGAACGCGGAAGAGCCCAAACCTGGATGCTTGCATCCAGGGGTTGTAGGACTGATG
 TTGAGTTACAAAGGTATAAGATAGCAGAAACAGTTGGGAAGCTGTTCCAAAGAGGGTGAC
 AGGCCCGTATGCGAAATCTTGTACTCTCTAATCAGGATCCTGAGTACGGCCCAGCACGTG
 AAATTGGGTCGGAATCTGGGAGGACCATCTCCCAAGGCTAAATACTAACTAGTGACCGAT
 AGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGGAAGGGGAGTGAAATAGTTC
 TTGAAACCGTGTGCTTACAAGAAGTTCGAGGCCGTTAATGGCTGAGAGCGTGCTTTTTGT
 AGAATGAACCGGAGAGTTACGATTGCGTGCAAGGTTAAGGTGCAAAGACTGGAGCCGTAG
 CGAAAGCGAGTCTTAATAGGGCGAATCAGTACGTAGTTGTAGACCCGAAACCGAGTGACC
 TATCCATGGTCAGGTTGAAGGTGGGGTAATACCTACTGGAGGACCGAACAAGTGGGTGTT
 AAAAAACCCTTTGATGAACTGTGGATAGCGGTGAAATTCCAATCGAACTCGGAGATAGCT
 GGTTCTATCCGAAATACATTTAGGTGTAGCCTTGCAATTAGCTTACTGGAGGTAGAGCAC
 TATTTGGTCTAGGGGCCCTTCAAGGGTTACCAAAATCAGATAAACTCCGAATGCCAGCTA
 AGTATGTGCAGGAGTCAGACGGTGAGTGATAAGATCCATCGTCAAAAGGGGAACAGCCCA
 GATCACCAGTTAAGGTCCCTAAATATATGCTAAGTGGAAAACGTTGTGAAGGTGCATAGA
 CAACTAGGAGGTTGGCTCAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTAGT
 CGAGTGCTCTTGCGCGGATAATGTACCGGGGCTAAGCATATTACCGAAACTGTGGATGCG
 TAAGCATGGTAGGATAGCGTAATTAACGCGATGAAGGATGACCGTAAGGACATGTTGGAG
 CGTTAACTAGTGAGAATTCCGGTATGAGTAGCGAAAGATAGGTGAGAATCCTATCCACCG
 AATGAGTAAGGTTTCCCCCGGAAGGCTCGTCCGCGGGGGGTTAGTCGGGACCTAAGGCGA
 GGCTGAAAAGCGTAGTCGATGGACAACAGGTTGATATTCCTGTACCGATATTTAATTGCC
 GAAGGAAGGACGCAGAAGGATAACACAGGCCACTATTGGATGTGGTTTTAAACAGTTAGT
 CTTCATAAGAGTCAAATGCTTTTATGTTTAAGGATAAGCTGTGAATGTACCAAGTTTACT
 TGGAAATTGTGTGATTTCACGCTGCTGAAAAAAGTTTCGTAGGAAGAAAATATTGCCCGT
 ACCGCAAACCGACACAGGTACTCAAGTGGAGAACACTAAGGTGAGCGAGTGAACTATTGT
 TAAGGAACTCTGCAAAATGAGTCCGTAACTTCGGAAGAAGGACTGCTGGTTTTATACCAG
 CCGCAGCAAATAGGCCCAAACAACTGTTTATCAAAAACACAGGTTTCTGCAAAATCGTAA
 GATGAAGTATAGGGGCTGACGCCTGCCCAGTGCTGGAAGGTTAAAAGGAGGACTTAGCTT
 CGGCGAAGGTCTTAATTGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGG
 TAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCATGAAAGGCGTAATGATTTGGGCGC
 TGTCTCAACAATAGACTCGGTGAAATTTAAATTCCAGTGAAGATGCTGGGTACCCGCGAC
 AGGACGGAAAGACCCCGTGGAGCTTTACTGTAGCTTGATATTGAATGTTTGTGCTGCATG
 TGCAGGATAGGTAGGAGACTTTGAAGTCGGAACGCTAGTTTCGATTGAGTCACCCTTGAG
 ATACTACCTCTGTTGTATGAACGTTCTAACTCTGATCAGTTATCCTGATCGAAGACAGTG
 TCTGGCAGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGATAACGGAGGCGCTCAAAGG
 TTTGCTCAGAATGGTTGGAAATCATTCGTAGCGTGTAAAGGCATAAGCAAGCTTGACTGT
 GAGACTGACAAGTCGAGCAGGTACGAAAGTAGGACTTAGTGATCCGGTGGTTCCGTATGG
 AAGGGCCATCGCTCAACGGACAAAAGCTACCCCGGGGATAACAGGCTCATCTCCCCCAAG
 AGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGT
 AGTCGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGCGAGCTGGGTTCAGAA
 CGTCGTGAGACAGTTCGGTCCCTATCCGTCGTGGGCGCAGGAAATTTGAGAGGATCTGTC
 CTTAGTACGAGAGGACCGGGATGGACATACCTCTGGTGTACCAGTTGTTCTGCCAAGAGC
 ACCGCTGGGTAGCTACGTATGGATTAGATAATCGCTGAAAGCATCTAAGTGAGAAACTAA
 CCTCGAGATGAGATTTCCCATTCGTCAGAAGTAAGACCCCTGAGAGACGATCAGGTAGAT
 AGGCTAGAAGTGGAAGTGTAGTGATGCATGGAGCGGACTAGTACTAATAGGTCGAGGACT
 TAACCAA
 >rRNA_Contig1_1273861-1276747_DIR- /molecule=23s_rRNA /score=3245.6
 TTAAGTTAATAAGGGCGCATGGTGGATGCCTTGGCACTAGAAGGCGATGAAGGACGTGAC
 TAACTACGATATGCCTCGGTTAGCTGTAAGTAAGCTTACCCGGGGGTTTCCGAATGGGGC
 AACCCGATCTTAATGATCATCATCTTTTTGAATTCATAGATTAGATGAAGCAAACGCTGT
 GAACTGAAACATCTAAGTAGCAGTAGGAAAGTAAAGAAATTTCGATTCCGTCAGTAGCGG
 CGAGCGAACGCGGAAGAGCCCAAACCTGGATGCTTGCATCCAGGGGTTGTAGGACTGATG
 TTGAGTTACAAAGGTATAAGATAGCAGAAACAGTTGGGAAGCTGTTCCAAAGAGGGTGAC
 AGGCCCGTATGCGAAATCTTGTACTCTCTAATCAGGATCCTGAGTACGGCCCAGCACGTG
 AAATTGGGTCGGAATCTGGGAGGACCATCTCCCAAGGCTAAATACTAACTAGTGACCGAT
 AGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCGGAAGGGGAGTGAAATAGTTC
 TTGAAACCGTGTGCTTACAAGAAGTTCGAGGCCGTTAATGGCTGAGAGCGTGCTTTTTGT
 AGAATGAACCGGAGAGTTACGATTGCGTGCAAGGTTAAGGTGCAAAGACTGGAGCCGTAG
 CGAAAGCGAGTCTTAATAGGGCGAATCAGTACGTAGTTGTAGACCCGAAACCGAGTGACC
 TATCCATGGTCAGGTTGAAGGTGGGGTAATACCTACTGGAGGACCGAACAAGTGGGTGTT
 AAAAAACCCTTTGATGAACTGTGGATAGCGGTGAAATTCCAATCGAACTCGGAGATAGCT
 GGTTCTATCCGAAATACATTTAGGTGTAGCCTTGCAATTAGCTTACTGGAGGTAGAGCAC
 TATTTGGTCTAGGGGCCCTTCAAGGGTTACCAAAATCAGATAAACTCCGAATGCCAGCTA
 AGTATGTGCAGGAGTCAGACGGTGAGTGATAAGATCCATCGTCAAAAGGGGAACAGCCCA
 GATCACCAGTTAAGGTCCCTAAATATATGCTAAGTGGAAAACGTTGTGAAGGTGCATAGA
 CAACTAGGAGGTTGGCTCAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTAGT
 CGAGTGCTCTTGCGCGGATAATGTACCGGGGCTAAGCATATTACCGAAACTGTGGATGCG
 TAAGCATGGTAGGATAGCGTAATTAACGCGATGAAGGATGACCGTAAGGACATGTTGGAG
 CGTTAACTAGTGAGAATTCCGGTATGAGTAGCGAAAGATAGGTGAGAATCCTATCCACCG
 AATGAGTAAGGTTTCCCCCGGAAGGCTCGTCCGCGGGGGGTTAGTCGGGACCTAAGGCGA
 GGCTGAAAAGCGTAGTCGATGGACAACAGGTTGATATTCCTGTACCGATATTTAATTGCC
 GAAGGAAGGACGCAGAAGGATAACACAGGCCACTATTGGATGTGGTTTTAAACAGTTAGT
 CTTCATAAGAGTCAAATGCTTTTATGTTTAAGGATAAGCTGTGAATGTACCAAGTTTACT
 TGGAAATTGTGTGATTTCACGCTGCTGAAAAAAGTTTCGTAGGAAGAAAATATTGCCCGT
 ACCGCAAACCGACACAGGTACTCAAGTGGAGAACACTAAGGTGAGCGAGTGAACTATTGT
 TAAGGAACTCTGCAAAATGAGTCCGTAACTTCGGAAGAAGGACTGCTGGTTTTATACCAG
 CCGCAGCAAATAGGCCCAAACAACTGTTTATCAAAAACACAGGTTTCTGCAAAATCGTAA
 GATGAAGTATAGGGGCTGACGCCTGCCCAGTGCTGGAAGGTTAAAAGGAGGACTTAGCTT
 CGGCGAAGGTCTTAATTGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCCTAAGG
 TAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCATGAAAGGCGTAATGATTTGGGCGC
 TGTCTCAACAATAGACTCGGTGAAATTTAAATTCCAGTGAAGATGCTGGGTACCCGCGAC
 AGGACGGAAAGACCCCGTGGAGCTTTACTGTAGCTTGATATTGAATGTTTGTGCTGCATG
 TGCAGGATAGGTAGGAGACTTTGAAGTCGGAACGCTAGTTTCGATTGAGTCACCCTTGAG
 ATACTACCTCTGTTGTATGAACGTTCTAACTCTGATCAGTTATCCTGATCGAAGACAGTG
 TCTGGCAGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGATAACGGAGGCGCTCAAAGG
 TTTGCTCAGAATGGTTGGAAATCATTCGTAGCGTGTAAAGGCATAAGCAAGCTTGACTGT
 GAGACTGACAAGTCGAGCAGGTACGAAAGTAGGACTTAGTGATCCGGTGGTTCCGTATGG
 AAGGGCCATCGCTCAACGGACAAAAGCTACCCCGGGGATAACAGGCTCATCTCCCCCAAG
 AGTCCACATCGACGGGGAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGT
 AGTCGGTCCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGCGAGCTGGGTTCAGAA
 CGTCGTGAGACAGTTCGGTCCCTATCCGTCGTGGGCGCAGGAAATTTGAGAGGATCTGTC
 CTTAGTACGAGAGGACCGGGATGGACATACCTCTGGTGTACCAGTTGTTCTGCCAAGAGC
 ACCGCTGGGTAGCTACGTATGGATTAGATAATCGCTGAAAGCATCTAAGTGAGAAACTAA
 CCTCGAGATGAGATTTCCCATTCGTCAGAAGTAAGACCCCTGAGAGACGATCAGGTAGAT
 AGGCTAGAAGTGGAAGTGTAGTGATGCATGGAGCGGACTAGTACTAATAGGTCGAGGACT
 TAACCAA
 >rRNA_Contig1_616317-617868_DIR+ /molecule=16s_rRNA /score=1802.8
 AGAGTTTGATCCTGGCTCAGGATGAACGCTGGTGGCGTGCCTAATACATGCAAGTCGTAC
 GCTAGCCGCTGAATTGATCCTTCGGGTGAAGTGAGGCAATGACTAGAGTGGCGAACTGGT
 GAGTAACACGTAAGAAACCTGCCCTTTAGTGGGGGATAACATTTGGAAACAGATGCTAAT
 ACCGCGTAACAACAAATCACACATGTGATCTGTTTGAAAGGTCCTTTTGGATCGCTAGAG
 GATGGTCTTGCGGCGTATTAGCTTGTTGGTAGGGTAGAAGCCTACCAAGGCAATGATGCG
 TAGCCGAGTTGAGAGACTGGCCGGCCACATTGGGACTGAGACACTGCCCAAACTCCTACG
 GGAGGCTGCAGTAGGGAATTTTCCGCAATGCACGAAAGTGTGACGGAGCGACGCCGCGTG
 TGTGATGAAGGCTTTCGGGTCGTAAAGCACTGTTGTAAGGGAAGAATAACTGAATTCAGA
 GAAAGTTTTCAGCTTGACGGTACCTTACCAGAAAGGGATGGCTAAATACGTGCCAGCAGC
 CGCGGTAATACGTATGTCCCGAGCGTTATCCGGATTTATTGGGCGTAAAGCGAGCGCAGA
 CGGTTTATTAAGTCTGATGTGAAATCCCGAGGCCCAACCTCGGAACTGCATTGGAAACTG
 ATTTACTTGAGTGCGATAGAGGCAAGTGGAACTCCATGTGTAGCGGTGAAATGCGTAGAT
 ATGTGGAAGAACACCAGTGGCGAAAGCGGCTTGCTAGATCGTAACTGACGTTGAGGCTCG
 AAAGTATGGGTAGCAAACGGGATTAGATACCCCGGTAGTCCATACCGTAAACGATGGGTG
 CTAGTTGTTAAGAGGTTTCCGCCTCCTAGTGACGTAGCAAACGCATTAAGCACCCCGCCT
 GAGGAGTACGGCCGCAAGGCTAAAACTTAAAGGAATTGACGGGGACCCGCACAAGCGGTG
 GAGCATGTGGTTTAATTCGAAGATACGCGAAAAACCTTACCAGGTCTTGACATACCAATG
 ATCGCTTTTGTAATGAAAGCTTTTCTTCGGAACATTGGATACAGGTGGTGCATGGTCGTC
 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTATTA
 GTTGCCAGCATTTAGTTGGGCACTCTAATGAGACTGCCGGTGATAAACCGGAGGAAGGTG
 GGGACGACGTCAGATCATCATGCCCCTTATGACCTGGGCAACACACGTGCTACAATGGGA
 AGTACAACGAGTCGCAAACCGGCGACGGTAAGCTAATCTCTTAAAACTTCTCTCAGTTCG
 GACTGGAGTCTGCAACTCGACTCCACGAAGGCGGAATCGCTAGTAATCGCGAATCAGCAT
 GTCGCGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCAAATCATGGGAGTCGGA
 AGTACCCAAAGTCGCTTGGCTAACTTTTAGAGGCCGGTGCCTAAGGTAAAATCGATGACT
 GGGATTAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCT
 >rRNA_Contig1_1277140-1278691_DIR- /molecule=16s_rRNA /score=1802.8
 AGAGTTTGATCCTGGCTCAGGATGAACGCTGGTGGCGTGCCTAATACATGCAAGTCGTAC
 GCTAGCCGCTGAATTGATCCTTCGGGTGAAGTGAGGCAATGACTAGAGTGGCGAACTGGT
 GAGTAACACGTAAGAAACCTGCCCTTTAGTGGGGGATAACATTTGGAAACAGATGCTAAT
 ACCGCGTAACAACAAATCACACATGTGATCTGTTTGAAAGGTCCTTTTGGATCGCTAGAG
 GATGGTCTTGCGGCGTATTAGCTTGTTGGTAGGGTAGAAGCCTACCAAGGCAATGATGCG
 TAGCCGAGTTGAGAGACTGGCCGGCCACATTGGGACTGAGACACTGCCCAAACTCCTACG
 GGAGGCTGCAGTAGGGAATTTTCCGCAATGCACGAAAGTGTGACGGAGCGACGCCGCGTG
 TGTGATGAAGGCTTTCGGGTCGTAAAGCACTGTTGTAAGGGAAGAATAACTGAATTCAGA
 GAAAGTTTTCAGCTTGACGGTACCTTACCAGAAAGGGATGGCTAAATACGTGCCAGCAGC
 CGCGGTAATACGTATGTCCCGAGCGTTATCCGGATTTATTGGGCGTAAAGCGAGCGCAGA
 CGGTTTATTAAGTCTGATGTGAAATCCCGAGGCCCAACCTCGGAACTGCATTGGAAACTG
 ATTTACTTGAGTGCGATAGAGGCAAGTGGAACTCCATGTGTAGCGGTGAAATGCGTAGAT
 ATGTGGAAGAACACCAGTGGCGAAAGCGGCTTGCTAGATCGTAACTGACGTTGAGGCTCG
 AAAGTATGGGTAGCAAACGGGATTAGATACCCCGGTAGTCCATACCGTAAACGATGGGTG
 CTAGTTGTTAAGAGGTTTCCGCCTCCTAGTGACGTAGCAAACGCATTAAGCACCCCGCCT
 GAGGAGTACGGCCGCAAGGCTAAAACTTAAAGGAATTGACGGGGACCCGCACAAGCGGTG
 GAGCATGTGGTTTAATTCGAAGATACGCGAAAAACCTTACCAGGTCTTGACATACCAATG
 ATCGCTTTTGTAATGAAAGCTTTTCTTCGGAACATTGGATACAGGTGGTGCATGGTCGTC
 GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTATTA
 GTTGCCAGCATTTAGTTGGGCACTCTAATGAGACTGCCGGTGATAAACCGGAGGAAGGTG
 GGGACGACGTCAGATCATCATGCCCCTTATGACCTGGGCAACACACGTGCTACAATGGGA
 AGTACAACGAGTCGCAAACCGGCGACGGTAAGCTAATCTCTTAAAACTTCTCTCAGTTCG
 GACTGGAGTCTGCAACTCGACTCCACGAAGGCGGAATCGCTAGTAATCGCGAATCAGCAT
 GTCGCGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCAAATCATGGGAGTCGGA
 AGTACCCAAAGTCGCTTGGCTAACTTTTAGAGGCCGGTGCCTAAGGTAAAATCGATGACT
 GGGATTAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGGATCACCT