DNA Replication, Recombination and Repair

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
3-methyladenine DNA glycosylase	L	Contig1	OEOE0312	COG2818	233	7e-63
5'-3' exonuclease (including N-terminal domain of PolI)	L	Contig1	OEOE0673	COG0258	238	1e-63
ATPase involved in DNA repair	L	Contig1	OEOE0173	COG0419	39	8e-04
ATPase involved in DNA repair	L	Contig1	OEOE0198	COG0419	42	3e-05
ATPase involved in DNA repair	L	Contig1	OEOE0269	COG0419	36	0.003
ATPase involved in DNA repair	L	Contig1	OEOE0270	COG0419	50	1e-07
ATPase involved in DNA repair	L	Contig1	OEOE0277	COG0419	49	3e-07
ATPase involved in DNA repair	L	Contig1	OEOE0374	COG0419	47	9e-06
ATPase involved in DNA repair	L	Contig1	OEOE0415	COG0419	47	3e-06
ATPase involved in DNA repair	L	Contig1	OEOE0439	COG0497	34	0.010
ATPase involved in DNA repair	L	Contig1	OEOE0439	COG0419	53	2e-08
ATPase involved in DNA repair	L	Contig1	OEOE0454	COG0497	72	3e-13
ATPase involved in DNA repair	L	Contig1	OEOE0454	COG0419	85	3e-17
ATPase involved in DNA repair	L	Contig1	OEOE0476	COG0419	56	1e-08
ATPase involved in DNA repair	L	Contig1	OEOE0559	COG0419	39	4e-04
ATPase involved in DNA repair	L	Contig1	OEOE0560	COG0419	39	4e-04
ATPase involved in DNA repair	L	Contig1	OEOE0623	COG0419	41	8e-05
ATPase involved in DNA repair	L	Contig1	OEOE0624	COG0419	37	0.002
ATPase involved in DNA repair	L	Contig1	OEOE0630	COG0419	38	0.001
ATPase involved in DNA repair	L	Contig1	OEOE0722	COG0419	38	9e-04
ATPase involved in DNA repair	L	Contig1	OEOE0735	COG0419	40	2e-04
ATPase involved in DNA repair	L	Contig1	OEOE0738	COG0419	49	4e-07
ATPase involved in DNA repair	L	Contig1	OEOE0750	COG0419	49	3e-07
ATPase involved in DNA repair	L	Contig1	OEOE0829	COG0419	35	0.006
ATPase involved in DNA repair	L	Contig1	OEOE0830	COG0419	42	4e-05
ATPase involved in DNA repair	L	Contig1	OEOE0844	COG0419	39	7e-04
ATPase involved in DNA repair	L	Contig1	OEOE0889	COG0419	45	1e-05
ATPase involved in DNA repair	L	Contig1	OEOE0903	COG0419	49	1e-06
ATPase involved in DNA repair	L	Contig1	OEOE1056	COG0419	37	0.002
ATPase involved in DNA repair	L	Contig1	OEOE1086	COG0419	35	0.004
ATPase involved in DNA repair	L	Contig1	OEOE1087	COG0419	47	2e-06
ATPase involved in DNA repair	L	Contig1	OEOE1187	COG0419	45	5e-06
ATPase involved in DNA repair	L	Contig1	OEOE1233	COG0497	493	1.0e-140
ATPase involved in DNA repair	L	Contig1	OEOE1233	COG0419	53	6e-08
ATPase involved in DNA repair	L	Contig1	OEOE1274	COG0419	39	3e-04
ATPase involved in DNA repair	L	Contig1	OEOE1345	COG0419	37	0.006
ATPase involved in DNA repair	L	Contig1	OEOE1393	COG0419	36	0.009
ATPase involved in DNA repair	L	Contig1	OEOE1427	COG0419	44	1e-05
ATPase involved in DNA repair	L	Contig1	OEOE1433	COG0419	52	1e-07
ATPase involved in DNA repair	L	Contig1	OEOE1456	COG0419	42	1e-04
ATPase involved in DNA repair	L	Contig1	OEOE1464	COG0419	40	2e-04
ATPase involved in DNA repair	L	Contig1	OEOE1489	COG0419	50	4e-07
ATPase involved in DNA repair	L	Contig1	OEOE1540	COG0419	41	2e-04
ATPase involved in DNA repair	L	Contig1	OEOE1607	COG0419	39	7e-04
ATPase involved in DNA repair	L	Contig1	OEOE1619	COG0419	41	1e-04
ATPase involved in DNA repair	L	Contig1	OEOE1634	COG0419	38	4e-04
ATPase involved in DNA repair	L	Contig1	OEOE1635	COG0419	37	0.005
ATPase involved in DNA repair	L	Contig1	OEOE1666	COG0419	39	3e-04
ATPase involved in DNA repair	L	Contig1	OEOE1689	COG0419	45	4e-06
ATPase involved in DNA repair	L	Contig1	OEOE1805	COG0419	35	0.007
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig1	OEOE0188	COG2256	54	5e-08
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig1	OEOE0514	COG2256	46	1e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig1	OEOE0572	COG2256	50	5e-07
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig1	OEOE0578	COG2256	81	1e-16
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig1	OEOE0640	COG2256	43	7e-05
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig1	OEOE1192	COG2256	559	1.0e-160
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig1	OEOE1410	COG2256	102	8e-23
ATPase related to the helicase subunit of the Holliday junction resolvase	L	Contig1	OEOE1729	COG2256	42	1e-04
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	Contig1	OEOE0426	COG0507	40	5e-04
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member	L	Contig1	OEOE1106	COG0507	329	5e-91
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig1	OEOE0309	COG1074	438	1.0e-123
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig1	OEOE0426	COG1074	167	4e-42
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig1	OEOE1233	COG1074	37	0.004
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)	L	Contig1	OEOE1440	COG1074	47	6e-06
ATP-dependent nuclease subunit B	L	Contig1	OEOE0308	COG3857	388	1.0e-108
ATP-dependent nuclease subunit B	L	Contig1	OEOE0426	COG3857	40	7e-04
Bacterial nucleoid DNA-binding protein	L	Contig1	OEOE1010	COG0776	118	7e-29

BASAL REPLICATION MACHINERY

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATPase involved in DNA replication	L	Contig1	OEOE1410	COG0470	40	4e-04
ATPase involved in DNA replication initiation	L	Contig1	OEOE0001	COG0593	376	1.0e-105
ATPase involved in DNA replication initiation	L	Contig1	OEOE0188	COG0593	44	3e-05
ATPase involved in DNA replication initiation	L	Contig1	OEOE0678	COG0593	44	1e-05
ATPase involved in DNA replication initiation	L	Contig1	OEOE1192	COG0593	44	2e-05
DNA polymerase I - 3'-5' exonuclease and polymerase domains	L	Contig1	OEOE0673	COG0749	595	1.0e-171
DNA primase	L	Contig1	OEOE0995	COG0358	344	2e-95
DNA replication protein	L	Contig1	OEOE0001	COG1484	65	1e-11
DNA replication protein	L	Contig1	OEOE0514	COG1484	37	0.008
DNA replication protein	L	Contig1	OEOE0578	COG1484	42	8e-05
DNA replication protein	L	Contig1	OEOE0678	COG1484	84	9e-18
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig1	OEOE0427	COG0272	815	0.0
NAD-dependent DNA ligase (contains BRCT domain type II)	L	Contig1	OEOE1073	COG0272	38	0.002
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig1	OEOE0183	COG1198	68	3e-12
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig1	OEOE0372	COG1198	44	3e-05
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig1	OEOE0449	COG1198	65	2e-11
Primosomal protein N' (replication factor Y) - superfamily II helicase	L	Contig1	OEOE0786	COG1198	755	0.0
Replicative DNA helicase	L	Contig1	OEOE0015	COG0305	344	7e-96
Replicative DNA helicase	L	Contig1	OEOE0318	COG0305	48	2e-06
Ribonuclease HII	L	Contig1	OEOE1019	COG0164	184	3e-48
Ribonuclease HIII	L	Contig1	OEOE1019	COG1039	38	5e-04
Single-stranded DNA-binding protein	L	Contig1	OEOE0011	COG0629	109	1e-25
Topoisomerase IA	L	Contig1	OEOE0093	COG0550	388	1.0e-108
Topoisomerase IA	L	Contig1	OEOE0336	COG0550	66	2e-12
Topoisomerase IA	L	Contig1	OEOE1021	COG0550	602	1.0e-173
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig1	OEOE0006	COG0188	1006	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit	L	Contig1	OEOE1027	COG0188	761	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig1	OEOE0005	COG0187	932	0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit	L	Contig1	OEOE1026	COG0187	878	0.0

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Cdc6-related protein AAA superfamily ATPase	L	Contig1	OEOE1192	COG1474	36	0.004
Cdc6-related protein AAA superfamily ATPase	L	Contig1	OEOE1410	COG1474	38	0.003
Cdc6-related protein AAA superfamily ATPase	L	Contig1	OEOE1729	COG1474	37	0.003
DNA or RNA helicase of superfamily II	L	Contig1	OEOE0183	COG1061	57	9e-09
DNA or RNA helicase of superfamily II	L	Contig1	OEOE0372	COG1061	58	2e-09
DNA or RNA helicase of superfamily II	L	Contig1	OEOE0449	COG1061	57	3e-09
DNA or RNA helicase of superfamily II	L	Contig1	OEOE0786	COG1061	47	5e-06
DNA or RNA helicase of superfamily II	L	Contig1	OEOE1285	COG1061	47	3e-06
DNA or RNA helicase of superfamily II	L	Contig1	OEOE1643	COG1061	62	1e-10

DNA POLYMERASE III SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA polymerase III alpha subunit	L	Contig1	OEOE0983	COG0587	218	2e-57
DNA polymerase III alpha subunit	L	Contig1	OEOE1000	COG0587	752	0.0
DNA polymerase III alpha subunit (gram-positive type)	L	Contig1	OEOE0962	COG2176	39	5e-05
DNA polymerase III alpha subunit (gram-positive type)	L	Contig1	OEOE0983	COG2176	1545	0.0
DNA polymerase III alpha subunit (gram-positive type)	L	Contig1	OEOE1000	COG2176	87	5e-18
DNA polymerase III alpha subunit (gram-positive type)	L	Contig1	OEOE1099	COG2176	143	3e-35
DNA polymerase III alpha subunit (gram-positive type)	L	Contig1	OEOE1663	COG2176	99	1e-22
DNA polymerase III delta subunit	L	Contig1	OEOE0965	COG1466	140	1e-34
DNA polymerase III delta subunit	L	Contig1	OEOE1192	COG1466	45	1e-05
DNA polymerase III delta subunit	L	Contig1	OEOE1410	COG1466	48	2e-06
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig1	OEOE0983	COG0847	121	3e-28
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig1	OEOE1099	COG0847	116	5e-27
DNA polymerase III epsilon subunit and related 3'-5' exonuclease	L	Contig1	OEOE1663	COG0847	101	2e-23
DNA polymerase III gamma/tau subunits	L	Contig1	OEOE0578	COG2812	43	4e-05
DNA polymerase III gamma/tau subunits	L	Contig1	OEOE0965	COG2812	56	3e-09
DNA polymerase III gamma/tau subunits	L	Contig1	OEOE1192	COG2812	95	9e-21
DNA polymerase III gamma/tau subunits	L	Contig1	OEOE1405	COG2812	64	1e-11
DNA polymerase III gamma/tau subunits	L	Contig1	OEOE1410	COG2812	339	3e-94
DNA polymerase sliding clamp subunit (PCNA homolog)	L	Contig1	OEOE0002	COG0592	219	4e-58

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA repair exonuclease	L	Contig1	OEOE0902	COG0420	129	5e-31
DNA repair protein	L	Contig1	OEOE0946	COG2003	35	0.007
DNA topoisomerase VI subunit B	L	Contig1	OEOE0106	COG1389	39	9e-04
DNA topoisomerase VI subunit B	L	Contig1	OEOE0143	COG1389	38	0.002
DNA uptake protein and related DNA-binding protein	L	Contig1	OEOE0577	COG1555	37	0.001
DNA uptake protein and related DNA-binding protein	L	Contig1	OEOE0962	COG1555	78	1e-16
ERCC4-like helicase	L	Contig1	OEOE0183	COG1111	44	7e-05
ERCC4-like helicase	L	Contig1	OEOE0372	COG1111	51	2e-07
ERCC4-like helicase	L	Contig1	OEOE0449	COG1111	41	4e-04
ERCC4-like helicase	L	Contig1	OEOE1285	COG1111	51	1e-07
ERCC4-like helicase	L	Contig1	OEOE1643	COG1111	56	6e-09
ERCC4-type nuclease	L	Contig1	OEOE0427	COG1948	40	5e-04
Excinuclease ATPase subunit	L	Contig1	OEOE0020	COG0178	44	1e-05
Excinuclease ATPase subunit	L	Contig1	OEOE0030	COG0178	39	4e-04
Excinuclease ATPase subunit	L	Contig1	OEOE0173	COG0178	53	3e-08
Excinuclease ATPase subunit	L	Contig1	OEOE0198	COG0178	45	6e-06
Excinuclease ATPase subunit	L	Contig1	OEOE0205	COG0178	34	0.007
Excinuclease ATPase subunit	L	Contig1	OEOE0270	COG0178	57	1e-09
Excinuclease ATPase subunit	L	Contig1	OEOE0277	COG0178	44	6e-06
Excinuclease ATPase subunit	L	Contig1	OEOE0374	COG0178	1475	0.0
Excinuclease ATPase subunit	L	Contig1	OEOE0414	COG0178	53	4e-08
Excinuclease ATPase subunit	L	Contig1	OEOE0415	COG0178	56	5e-09
Excinuclease ATPase subunit	L	Contig1	OEOE0439	COG0178	43	2e-05
Excinuclease ATPase subunit	L	Contig1	OEOE0476	COG0178	50	6e-07
Excinuclease ATPase subunit	L	Contig1	OEOE0517	COG0178	36	0.003
Excinuclease ATPase subunit	L	Contig1	OEOE0551	COG0178	41	1e-04
Excinuclease ATPase subunit	L	Contig1	OEOE0559	COG0178	50	2e-07
Excinuclease ATPase subunit	L	Contig1	OEOE0560	COG0178	43	2e-05
Excinuclease ATPase subunit	L	Contig1	OEOE0623	COG0178	40	2e-04
Excinuclease ATPase subunit	L	Contig1	OEOE0624	COG0178	41	9e-05
Excinuclease ATPase subunit	L	Contig1	OEOE0630	COG0178	52	8e-08
Excinuclease ATPase subunit	L	Contig1	OEOE0722	COG0178	46	3e-06
Excinuclease ATPase subunit	L	Contig1	OEOE0735	COG0178	44	6e-06
Excinuclease ATPase subunit	L	Contig1	OEOE0738	COG0178	45	5e-06
Excinuclease ATPase subunit	L	Contig1	OEOE0750	COG0178	62	3e-11
Excinuclease ATPase subunit	L	Contig1	OEOE0829	COG0178	51	8e-08
Excinuclease ATPase subunit	L	Contig1	OEOE0830	COG0178	55	5e-09
Excinuclease ATPase subunit	L	Contig1	OEOE0844	COG0178	46	3e-06
Excinuclease ATPase subunit	L	Contig1	OEOE0845	COG0178	38	8e-04
Excinuclease ATPase subunit	L	Contig1	OEOE0889	COG0178	648	0.0
Excinuclease ATPase subunit	L	Contig1	OEOE1056	COG0178	51	1e-07
Excinuclease ATPase subunit	L	Contig1	OEOE1086	COG0178	44	9e-06
Excinuclease ATPase subunit	L	Contig1	OEOE1087	COG0178	60	2e-10
Excinuclease ATPase subunit	L	Contig1	OEOE1187	COG0178	41	9e-05
Excinuclease ATPase subunit	L	Contig1	OEOE1274	COG0178	36	0.003
Excinuclease ATPase subunit	L	Contig1	OEOE1345	COG0178	42	1e-04
Excinuclease ATPase subunit	L	Contig1	OEOE1379	COG0178	39	0.001
Excinuclease ATPase subunit	L	Contig1	OEOE1380	COG0178	38	0.002
Excinuclease ATPase subunit	L	Contig1	OEOE1427	COG0178	63	2e-11
Excinuclease ATPase subunit	L	Contig1	OEOE1433	COG0178	38	0.002
Excinuclease ATPase subunit	L	Contig1	OEOE1456	COG0178	51	2e-07
Excinuclease ATPase subunit	L	Contig1	OEOE1464	COG0178	38	0.001
Excinuclease ATPase subunit	L	Contig1	OEOE1489	COG0178	54	2e-08
Excinuclease ATPase subunit	L	Contig1	OEOE1534	COG0178	38	7e-04
Excinuclease ATPase subunit	L	Contig1	OEOE1540	COG0178	60	4e-10
Excinuclease ATPase subunit	L	Contig1	OEOE1607	COG0178	55	1e-08
Excinuclease ATPase subunit	L	Contig1	OEOE1618	COG0178	48	9e-07
Excinuclease ATPase subunit	L	Contig1	OEOE1619	COG0178	48	1e-06
Excinuclease ATPase subunit	L	Contig1	OEOE1634	COG0178	47	2e-06
Excinuclease ATPase subunit	L	Contig1	OEOE1635	COG0178	41	3e-04
Excinuclease ATPase subunit	L	Contig1	OEOE1651	COG0178	54	2e-08
Excinuclease ATPase subunit	L	Contig1	OEOE1666	COG0178	39	2e-04
Excinuclease ATPase subunit	L	Contig1	OEOE1689	COG0178	57	1e-09
Excinuclease ATPase subunit	L	Contig1	OEOE1711	COG0178	41	3e-04
Excinuclease ATPase subunit	L	Contig1	OEOE1712	COG0178	40	5e-04
Excinuclease ATPase subunit	L	Contig1	OEOE1720	COG0178	48	1e-06
Excinuclease ATPase subunit	L	Contig1	OEOE1805	COG0178	38	9e-04
Exonuclease III	L	Contig1	OEOE1659	COG0708	218	5e-58
Exonuclease V gamma subunit	L	Contig1	OEOE0308	COG1330	41	4e-04
Exonuclease V gamma subunit	L	Contig1	OEOE0426	COG1330	40	6e-04
Exonuclease VII large subunit	L	Contig1	OEOE1237	COG1570	316	2e-87
Exonuclease VII small subunit	L	Contig1	OEOE1236	COG1722	43	6e-06
Formamidopyrimidine-DNA glycosylase	L	Contig1	OEOE0675	COG0266	317	7e-88
G:T/U mismatch-specific DNA glycosylase	L	Contig1	OEOE0526	COG3663	98	4e-22
Helicase subunit of the DNA excision repair complex	L	Contig1	OEOE0183	COG0556	108	2e-24
Helicase subunit of the DNA excision repair complex	L	Contig1	OEOE0372	COG0556	1064	0.0
Helicase subunit of the DNA excision repair complex	L	Contig1	OEOE0449	COG0556	47	6e-06
Helicase subunit of the DNA excision repair complex	L	Contig1	OEOE0786	COG0556	53	6e-08
Helicase subunit of the DNA excision repair complex	L	Contig1	OEOE1073	COG0556	37	0.006
Helicase subunit of the DNA excision repair complex	L	Contig1	OEOE1285	COG0556	46	6e-06
Helicase subunit of the DNA excision repair complex	L	Contig1	OEOE1643	COG0556	50	5e-07
Holliday junction resolvasome DNA-binding subunit	L	Contig1	OEOE0577	COG0632	179	1e-46
Holliday junction resolvasome helicase subunit	L	Contig1	OEOE0188	COG2255	44	5e-05
Holliday junction resolvasome helicase subunit	L	Contig1	OEOE0578	COG2255	487	1.0e-139
Holliday junction resolvasome helicase subunit	L	Contig1	OEOE1192	COG2255	71	2e-13
Holliday junction resolvasome helicase subunit	L	Contig1	OEOE1410	COG2255	54	4e-08
Holliday junction resolvasome helicase subunit	L	Contig1	OEOE1729	COG2255	53	4e-08
HrpA-like helicase	L	Contig1	OEOE0183	COG1643	45	3e-05
HrpA-like helicase	L	Contig1	OEOE1285	COG1643	51	2e-07
HrpA-like helicase	L	Contig1	OEOE1643	COG1643	52	1e-07
Integrase	L	Contig1	OEOE1003	COG0582	60	2e-10
Integrase	L	Contig1	OEOE1023	COG0582	53	2e-08
Intein/homing endonuclease	L	Contig1	OEOE0438	COG1372	37	0.005
Methylated DNA-protein cysteine methyltransferase	L	Contig1	OEOE0799	COG0350	97	7e-22
Mg-dependent DNase	L	Contig1	OEOE1551	COG0084	249	1e-67
Mismatch repair ATPase (MutS family)	L	Contig1	OEOE0458	COG1193	532	1.0e-152
Mismatch repair ATPase (MutS family)	L	Contig1	OEOE0458	COG0249	195	8e-51
N6-adenine-specific methylase	L	Contig1	OEOE1260	COG0742	161	2e-41
N6-adenine-specific methylase	L	Contig1	OEOE1581	COG0742	42	5e-05
N6-adenine-specific methylase	L	Contig1	OEOE1674	COG0742	47	4e-06
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig1	OEOE0317	COG2816	36	0.002
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig1	OEOE0515	COG2816	42	2e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig1	OEOE0519	COG2816	42	3e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding	L	Contig1	OEOE1181	COG2816	45	5e-06
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig1	OEOE0317	COG0494	40	7e-05
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig1	OEOE0515	COG0494	48	2e-07
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig1	OEOE0519	COG0494	49	2e-07
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig1	OEOE0674	COG0494	40	2e-04
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig1	OEOE1181	COG0494	51	4e-08
NTP pyrophosphohydrolase including oxidative damage repair protein	L	Contig1	OEOE1697	COG0494	37	7e-04
Nuclease subunit of the excinuclease complex	L	Contig1	OEOE0372	COG0322	40	5e-04
Nuclease subunit of the excinuclease complex	L	Contig1	OEOE0427	COG0322	42	2e-04
Nuclease subunit of the excinuclease complex	L	Contig1	OEOE1073	COG0322	532	1.0e-152
Nucleosome binding factor SPN SPT16 subunit	L	Contig1	OEOE0574	COG5406	47	3e-06
Nucleosome binding factor SPN SPT16 subunit	L	Contig1	OEOE0959	COG5406	45	5e-06
Nucleosome binding factor SPN SPT16 subunit	L	Contig1	OEOE1788	COG5406	34	0.006
Nucleotidyltransferase/DNA polymerase involved in DNA repair	L	Contig1	OEOE0794	COG0389	205	6e-54
Predicted ATPase involved in replication control Cdc46/Mcm family	L	Contig1	OEOE1729	COG1241	36	0.006
Predicted ATP-dependent endonuclease of the OLD family	L	Contig1	OEOE0004	COG3593	43	3e-05
Predicted ATP-dependent endonuclease of the OLD family	L	Contig1	OEOE0454	COG3593	44	5e-05
Predicted ATP-dependent endonuclease of the OLD family	L	Contig1	OEOE0903	COG3593	40	0.001
Predicted ATP-dependent endonuclease of the OLD family	L	Contig1	OEOE1233	COG3593	47	3e-06
Predicted DNA modification methylase	L	Contig1	OEOE1078	COG1041	34	0.007
Predicted DNA modification methylase	L	Contig1	OEOE1081	COG1041	38	0.001
Predicted DNA modification methylase	L	Contig1	OEOE1581	COG1041	38	6e-04
Predicted endonuclease containing a URI domain	L	Contig1	OEOE0974	COG2827	91	1e-19
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)	L	Contig1	OEOE1165	COG0816	151	2e-38
Predicted methylated DNA-protein cysteine methyltransferase	L	Contig1	OEOE0799	COG3695	38	3e-04
Predicted N6-adenine-specific DNA methylase	L	Contig1	OEOE1081	COG0116	397	1.0e-112
Predicted N6-adenine-specific DNA methylase	L	Contig1	OEOE1581	COG0116	41	1e-04
Predicted NTP pyrophosphohydrolase	L	Contig1	OEOE1697	COG4119	35	0.003
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	L	Contig1	OEOE1020	COG0758	241	7e-65
Predicted site-specific integrase-resolvase	L	Contig1	OEOE0687	COG2452	41	4e-05
Putative primosome component and related protein	L	Contig1	OEOE1096	COG3935	103	2e-23
RecA-family ATPase	L	Contig1	OEOE0318	COG3598	37	0.002
RecA/RadA recombinase	L	Contig1	OEOE0318	COG0468	62	7e-11
RecA/RadA recombinase	L	Contig1	OEOE1382	COG0468	301	5e-83
RecB family exonuclease	L	Contig1	OEOE0308	COG2887	38	0.004
RecG-like helicase	L	Contig1	OEOE0183	COG1200	356	8e-99
RecG-like helicase	L	Contig1	OEOE0372	COG1200	51	4e-07
RecG-like helicase	L	Contig1	OEOE0449	COG1200	734	0.0
RecG-like helicase	L	Contig1	OEOE0786	COG1200	71	3e-13
RecG-like helicase	L	Contig1	OEOE0794	COG1200	38	0.002
RecG-like helicase	L	Contig1	OEOE1285	COG1200	67	3e-12
RecG-like helicase	L	Contig1	OEOE1643	COG1200	38	0.002
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig1	OEOE1228	COG1107	41	2e-05
RecJ-like exonuclease contains DnaJ-type Zn finger domain	L	Contig1	OEOE1439	COG1107	42	1e-04
Recombinational DNA repair ATPase (RecF pathway)	L	Contig1	OEOE0004	COG1195	349	2e-97
Recombinational DNA repair ATPase (RecF pathway)	L	Contig1	OEOE0454	COG1195	56	1e-08
Recombinational DNA repair ATPase (RecF pathway)	L	Contig1	OEOE1233	COG1195	46	5e-06
Recombinational DNA repair protein (RecF pathway)	L	Contig1	OEOE0990	COG1381	130	7e-32
Recombinational DNA repair protein (RecF pathway)	L	Contig1	OEOE1409	COG0353	255	2e-69
Replication initiation/membrane attachment protein	L	Contig1	OEOE0677	COG3611	110	2e-25
Reverse gyrase	L	Contig1	OEOE0093	COG1110	112	9e-26
Reverse gyrase	L	Contig1	OEOE0336	COG1110	47	9e-07
Reverse gyrase	L	Contig1	OEOE0372	COG1110	36	0.007
Reverse gyrase	L	Contig1	OEOE0449	COG1110	44	3e-05
Reverse gyrase	L	Contig1	OEOE1021	COG1110	326	3e-90
Serine/threonine protein kinase	L	Contig1	OEOE0789	COG0515	166	4e-42
Single-stranded DNA-specific exonuclease	L	Contig1	OEOE1070	COG0608	341	8e-95
Site-specific recombinase DNA invertase Pin homologs	L	Contig1	OEOE0687	COG1961	91	6e-20
Site-specific recombinase XerC	L	Contig1	OEOE1003	COG4973	232	3e-62
Site-specific recombinase XerC	L	Contig1	OEOE1023	COG4973	219	2e-58
Site-specific recombinase XerD	L	Contig1	OEOE1003	COG4974	331	4e-92
Site-specific recombinase XerD	L	Contig1	OEOE1023	COG4974	300	6e-83
Small primase-like protein (Toprim domain)	L	Contig1	OEOE1550	COG1658	75	3e-15
Superfamily I DNA and RNA helicase	L	Contig1	OEOE0309	COG0210	185	1e-47
Superfamily I DNA and RNA helicase	L	Contig1	OEOE0426	COG0210	585	1.0e-168
Superfamily I DNA and RNA helicase	L	Contig1	OEOE1440	COG0210	47	5e-06
Superfamily II DNA and RNA helicase	L	Contig1	OEOE0183	COG0513	59	1e-09
Superfamily II DNA and RNA helicase	L	Contig1	OEOE0372	COG0513	66	1e-11
Superfamily II DNA and RNA helicase	L	Contig1	OEOE0449	COG0513	74	4e-14
Superfamily II DNA and RNA helicase	L	Contig1	OEOE0786	COG0513	52	2e-07
Superfamily II DNA and RNA helicase	L	Contig1	OEOE1285	COG0513	330	9e-92
Superfamily II DNA and RNA helicase	L	Contig1	OEOE1643	COG0513	417	1.0e-117
Superfamily II DNA helicase	L	Contig1	OEOE0183	COG0514	50	1e-06
Superfamily II DNA helicase	L	Contig1	OEOE0372	COG0514	50	6e-07
Superfamily II DNA helicase	L	Contig1	OEOE0449	COG0514	77	6e-15
Superfamily II DNA helicase	L	Contig1	OEOE0786	COG0514	38	0.004
Superfamily II DNA helicase	L	Contig1	OEOE1285	COG0514	98	1e-21
Superfamily II DNA helicase	L	Contig1	OEOE1643	COG0514	98	1e-21
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig1	OEOE0183	COG4098	82	2e-16
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig1	OEOE0372	COG4098	50	4e-07
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig1	OEOE0449	COG4098	59	1e-09
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)	L	Contig1	OEOE0786	COG4098	53	1e-07
Transcription-repair coupling factor (superfamily II helicase)	L	Contig1	OEOE0183	COG1197	1112	0.0
Transcription-repair coupling factor (superfamily II helicase)	L	Contig1	OEOE0372	COG1197	131	2e-31
Transcription-repair coupling factor (superfamily II helicase)	L	Contig1	OEOE0449	COG1197	340	2e-94
Transcription-repair coupling factor (superfamily II helicase)	L	Contig1	OEOE0786	COG1197	64	5e-11
Transposase and inactivated derivatives	L	Contig1	OEOE0334	COG3293	48	2e-07
Transposase and inactivated derivatives	L	Contig1	OEOE0335	COG3293	42	2e-05
Transposase and inactivated derivatives	L	Contig1	OEOE0523	COG3464	118	3e-28
Transposase and inactivated derivatives	L	Contig1	OEOE0743	COG3293	48	2e-07
Transposase and inactivated derivatives	L	Contig1	OEOE0744	COG3293	42	2e-05
Transposase and inactivated derivatives	L	Contig1	OEOE0746	COG3293	42	2e-05
Transposase and inactivated derivatives	L	Contig1	OEOE0747	COG3293	48	2e-07
Transposase and inactivated derivatives	L	Contig1	OEOE1334	COG3464	118	3e-28
Transposase and inactivated derivatives	L	Contig1	OEOE1494	COG2801	61	7e-11
Transposase and inactivated derivatives	L	Contig1	OEOE1495	COG2963	44	2e-06
Transposase and inactivated derivatives IS30 family	L	Contig1	OEOE0307	COG2826	206	2e-54
Transposase and inactivated derivatives IS30 family	L	Contig1	OEOE0356	COG2826	205	3e-54
Transposase and inactivated derivatives IS30 family	L	Contig1	OEOE1811	COG2826	205	2e-54
Uracil DNA glycosylase	L	Contig1	OEOE1436	COG0692	272	2e-74
Zn-finger domain associated with topoisomerase type I	L	Contig1	OEOE1021	COG0551	93	6e-20

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