Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 6 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 2 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig6 | 45 | 535420 ..535345 | 0..0 | 84.51 | 67.80 |
| Ala | GGC | Contig6 | 3 | 241612 ..241687 | 0..0 | 87.23 | 69.29 |
| Ala | TGC | Contig6 | 8 | 640108 ..640183 | 0..0 | 86.35 | 74.13 |
| Arg | ACG | Contig6 | 29 | 3342499..3342575 | 0..0 | 92.98 | 73.98 |
| Arg | CCG | Contig6 | 30 | 3397730..3397654 | 0..0 | 86.37 | 55.76 |
| Arg | CCT | Contig6 | 4 | 512678 ..512754 | 0..0 | 86.67 | 61.83 |
| Arg | TCG | Contig6 | 19 | 1906243..1906319 | 0..0 | 87.99 | 64.26 |
| Arg | TCT | Contig6 | 16 | 1682382..1682458 | 0..0 | 81.57 | 60.25 |
| Arg | TCT | Contig6 | 17 | 1709371..1709448 | 0..0 | 37.23 | 25.72 |
| Asn | GTT | Contig6 | 20 | 1951048..1951122 | 0..0 | 89.73 | 65.62 |
| Asp | GTC | Contig6 | 39 | 2073412..2073336 | 0..0 | 93.15 | 76.92 |
| Cys | GCA | Contig6 | 42 | 1652827..1652754 | 0..0 | 70.06 | 42.02 |
| Gln | CTG | Contig6 | 13 | 1377955..1378028 | 0..0 | 70.05 | 39.59 |
| Gln | TTG | Contig6 | 10 | 718800 ..718874 | 0..0 | 74.67 | 45.96 |
| Glu | CTC | Contig6 | 26 | 2654247..2654321 | 0..0 | 68.86 | 42.27 |
| Glu | TTC | Contig6 | 18 | 1759786..1759860 | 0..0 | 57.46 | 29.02 |
| Gly | CCC | Contig6 | 1 | 167120 ..167193 | 0..0 | 80.62 | 58.67 |
| Gly | GCC | Contig6 | 49 | 87547 ..87473 | 0..0 | 86.85 | 67.18 |
| Gly | TCC | Contig6 | 37 | 2244431..2244358 | 0..0 | 82.33 | 66.40 |
| His | GTG | Contig6 | 12 | 1113523..1113599 | 0..0 | 90.83 | 66.86 |
| Ile | GAT | Contig6 | 7 | 639999 ..640075 | 0..0 | 93.43 | 73.71 |
| Leu | CAA | Contig6 | 44 | 826150 ..826066 | 0..0 | 77.17 | 51.28 |
| Leu | CAG | Contig6 | 2 | 194684 ..194770 | 0..0 | 77.71 | 50.71 |
| Leu | GAG | Contig6 | 40 | 1890403..1890319 | 0..0 | 66.99 | 37.50 |
| Leu | TAA | Contig6 | 36 | 2381270..2381182 | 0..0 | 76.15 | 38.13 |
| Leu | TAG | Contig6 | 38 | 2085621..2085537 | 0..0 | 77.53 | 51.95 |
| Lys | CTT | Contig6 | 35 | 2555306..2555231 | 0..0 | 98.50 | 76.17 |
| Lys | TTT | Contig6 | 21 | 1962421..1962496 | 0..0 | 97.05 | 75.74 |
| Met | CAT | Contig6 | 11 | 915544 ..915620 | 0..0 | 83.88 | 55.32 |
| Met | CAT | Contig6 | 6 | 589505 ..589580 | 0..0 | 82.55 | 63.79 |
| Met | CAT | Contig6 | 9 | 684778 ..684854 | 0..0 | 91.88 | 75.73 |
| Phe | GAA | Contig6 | 47 | 310691 ..310616 | 0..0 | 88.73 | 66.87 |
| Pro | CGG | Contig6 | 33 | 2928617..2928541 | 0..0 | 85.24 | 59.01 |
| Pro | GGG | Contig6 | 14 | 1533855..1533932 | 0..0 | 81.40 | 53.97 |
| Pro | TGG | Contig6 | 41 | 1755731..1755655 | 0..0 | 79.83 | 55.97 |
| Ser | CGA | Contig6 | 46 | 494175 ..494086 | 0..0 | 76.06 | 44.47 |
| Ser | GCT | Contig6 | 23 | 2121035..2121128 | 0..0 | 74.74 | 48.93 |
| Ser | GGA | Contig6 | 32 | 3069119..3069030 | 0..0 | 81.68 | 52.08 |
| Ser | TGA | Contig6 | 15 | 1619556..1619645 | 0..0 | 79.34 | 46.93 |
| Thr | CGT | Contig6 | 5 | 533217 ..533292 | 0..0 | 93.84 | 64.27 |
| Thr | GGT | Contig6 | 48 | 274593 ..274519 | 0..0 | 89.35 | 62.03 |
| Thr | TGT | Contig6 | 25 | 2253607..2253681 | 0..0 | 83.07 | 58.45 |
| Trp | CCA | Contig6 | 43 | 1475737..1475662 | 0..0 | 91.15 | 66.67 |
| Tyr | GTA | Contig6 | 24 | 2246251..2246336 | 0..0 | 74.36 | 42.73 |
| Undet | ??? | Contig6 | 27 | 2671615..2671689 | 0..0 | 32.76 | 13.16 |
| Undet | ??? | Contig6 | 34 | 2672113..2672041 | 0..0 | 52.77 | 21.33 |
| Val | CAC | Contig6 | 28 | 3259630..3259704 | 0..0 | 81.20 | 58.80 |
| Val | GAC | Contig6 | 31 | 3181055..3180981 | 0..0 | 88.73 | 66.89 |
| Val | TAC | Contig6 | 22 | 2078266..2078342 | 0..0 | 88.53 | 62.05 |
tRNA Models
Contig6.trna1 (167120-167193) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (167152-167154) Score: 80.62
HMM Sc=58.67 Sec struct Sc=21.95
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGTTCAATGGTAGAACGGCAGCTTCCCAAGCTGCATACGAGGGTTCGATTCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig6.trna2 (194684-194770) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (194718-194720) Score: 77.71
HMM Sc=50.71 Sec struct Sc=27.00
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCTGGCTTCAGGTGCCAGTGGCTGCAAGGCCGTGAAGGTTCGAGTCCTTTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig6.trna3 (241612-241687) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (241645-241647) Score: 87.23
HMM Sc=69.29 Sec struct Sc=17.94
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna4 (512678-512754) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (512712-512714) Score: 86.67
HMM Sc=61.83 Sec struct Sc=24.84
* | * | * | * | * | * | * | *
Seq: GTCCCGGTAGCTCAGCTGGAtAGAGCACAGGTTTCCTAAACCTGGGGtCAGGGGTTCGACTCCCTTCCGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna5 (533217-533292) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (533250-533252) Score: 93.84
HMM Sc=64.27 Sec struct Sc=29.57
* | * | * | * | * | * | * | *
Seq: GCCGCTTTAGCTCAGTTGGTAGAGCACATCATTCGTAATGATGGGGtCGCGTGTTCGAGTCACGCAAGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna6 (589505-589580) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (589538-589540) Score: 82.55
HMM Sc=63.79 Sec struct Sc=18.76
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTtAGAGCCGGCCGCTCATAACGGTCTGGtTGGGGGTTCGAGTCCCTCCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna7 (639999-640075) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (640033-640035) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna8 (640108-640183) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (640141-640143) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig6.trna9 (684778-684854) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (684812-684814) Score: 91.88
HMM Sc=75.73 Sec struct Sc=16.15
* | * | * | * | * | * | * | *
Seq: GGCGAGGTAGCTCAGCTGGTtAGAGCACGGGAATCATAATCCTGGGGtCGGGGGTTCGAGTCCCTCCCTCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna10 (718800-718874) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (718832-718834) Score: 74.67
HMM Sc=45.96 Sec struct Sc=28.71
* | * | * | * | * | * | * |
Seq: TGGGGCGTAGCCAAGCGGTAAGGCAGGGGATTTTGATTCCCCCATtCGGAGGTTCGATCCCTCCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna11 (915544-915620) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (915578-915580) Score: 83.88
HMM Sc=55.32 Sec struct Sc=28.56
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig6.trna12 (1113523-1113599) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (1113557-1113559) Score: 90.83
HMM Sc=66.86 Sec struct Sc=23.97
* | * | * | * | * | * | * | *
Seq: GCAGTTGTAGCTCAGTTGGTtAGAGCGCCTGTCTGTGGAACAGGAGGtCGGTGGTTCGAGCCCACCCAACTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna13 (1377955-1378028) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (1377987-1377989) Score: 70.05
HMM Sc=39.59 Sec struct Sc=30.46
* | * | * | * | * | * | * |
Seq: TGGGGAATGGTGTAACGGTAGCACAACAGACTCTGACTCTGTTTGTCTAGGTTCGAATCCTAGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig6.trna14 (1533855-1533932) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (1533890-1533892) Score: 81.40
HMM Sc=53.97 Sec struct Sc=27.43
* | * | * | * | * | * | * | *
Seq: CGGAGCGTAGCGCAGCCcGGTtAGCGCACTAGTCTGGGAGACTAGGGGtCGGAGGTTCAAATCCTCTCGCTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna15 (1619556-1619645) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (1619590-1619592) Score: 79.34
HMM Sc=46.93 Sec struct Sc=32.41
* | * | * | * | * | * | * | * | *
Seq: GGAAGGGTGGCCGAGTGGTttAAGGCACCGGTCTTGAAAACCGGCGTGCCCGCAAGGGTACCGTGGGTTCGAATCCCACCCCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig6.trna16 (1682382-1682458) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (1682416-1682418) Score: 81.57
HMM Sc=60.25 Sec struct Sc=21.32
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGCTCAACTGGAtAGAGTAGCGGATTTCTACTCCGCGGGtTGCAGGTTCGAATCCTGCCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna17 (1709371-1709448) Length: 78 bp
Type: Arg Anticodon: TCT at 36-38 (1709406-1709408) Score: 37.23
HMM Sc=25.72 Sec struct Sc=11.51
* | * | * | * | * | * | * | *
Seq: GCTCACGGCGCAATTcGGAACCGTAgtaGCGGATTTCTACTCCGCGGGtTGCAGGTTCGAATCCTGCCGGGATCGCCA
Str: >.>>.>>>>>...........<<<....>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<.<....
Contig6.trna18 (1759786-1759860) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (1759819-1759821) Score: 57.46
HMM Sc=29.02 Sec struct Sc=28.44
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTATCGGTcAGGACGCCACCCTTTCACGGTGGAGAGAGCGGTTCGATTCCGCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig6.trna19 (1906243-1906319) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (1906277-1906279) Score: 87.99
HMM Sc=64.26 Sec struct Sc=23.73
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGCATCGGATTTCGATTCCGAGGGtCGGGAGTTCGAATCTCTCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna20 (1951048-1951122) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (1951080-1951082) Score: 89.73
HMM Sc=65.62 Sec struct Sc=24.11
* | * | * | * | * | * | * |
Seq: TCCCTGGTAGCTCAGCGGTAGAGCATTCGACTGTTAATCGAATGGtCGCAGGTTCGAATCCTGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna21 (1962421-1962496) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (1962454-1962456) Score: 97.05
HMM Sc=75.74 Sec struct Sc=21.31
* | * | * | * | * | * | * | *
Seq: GAGCGCGTAGCTCAGTTGGTAGAGCACGTGACTTTTAATCATGGGGtCGAGGGTTCGAGTCCCTCCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna22 (2078266-2078342) Length: 77 bp
Type: Val Anticodon: TAC at 35-37 (2078300-2078302) Score: 88.53
HMM Sc=62.05 Sec struct Sc=26.48
* | * | * | * | * | * | * | *
Seq: GGGCGGCTAGCTCAGCTGGTtAGAGCATCTCGTTTACACCGAGAGGGtCGGGAGTTCGAATCTCTCGCCGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna23 (2121035-2121128) Length: 94 bp
Type: Ser Anticodon: GCT at 35-37 (2121069-2121071) Score: 74.74
HMM Sc=48.93 Sec struct Sc=25.81
* | * | * | * | * | * | * | * | * |
Seq: GGAGCTGTGGCCGAGTGGCtgAAGGCGGCGGTTTGCTAAACCGTTATAGGGTTGTAAAGCCCTATCGAGGGTTCGAATCCCTCCGGCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig6.trna24 (2246251-2246336) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (2246285-2246287) Score: 74.36
HMM Sc=42.73 Sec struct Sc=31.63
* | * | * | * | * | * | * | * | *
Seq: GGGGGAGTGtCCCGAGTGGCaAAGGGAGCTGACTGTAAATCAGCCGCCTCATGGCTtCGCAGGTTCGAGTCCTGCCTCCCCCACCA
Str: >>>>>>>...>>>..........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig6.trna25 (2253607-2253681) Length: 75 bp
Type: Thr Anticodon: TGT at 33-35 (2253639-2253641) Score: 83.07
HMM Sc=58.45 Sec struct Sc=24.62
* | * | * | * | * | * | * |
Seq: GCCGGCGTAGCACAGCGGTAGTGCAGCGGTTTTGTAAACCGAAGGtCGGGAGTTCGATCCTCTCCGCCGGCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig6.trna26 (2654247-2654321) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (2654280-2654282) Score: 68.86
HMM Sc=42.27 Sec struct Sc=26.59
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTAGCGGTtAGGACGCGGCCCTCTCAAGGCTGAAACAGGGGTTCGATTCCCCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig6.trna27 (2671615-2671689) Length: 75 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 32.76
HMM Sc=13.16 Sec struct Sc=19.60
* | * | * | * | * | * | * |
Seq: GGCCCGGTGGCGGAAGTtCGACGCGGGAGCTgTGCAAAGCTTTTTATCCTGGTTCAAGTCCAGGCTGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>........<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig6.trna28 (3259630-3259704) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (3259662-3259664) Score: 81.20
HMM Sc=58.80 Sec struct Sc=22.40
* | * | * | * | * | * | * |
Seq: GGGCGCATAGCTCAGCGGGAGAGCGTTCCCTTCACACGGGAGAGGtCCAAGGTTCGATCCCTTGTGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna29 (3342499-3342575) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (3342533-3342535) Score: 92.98
HMM Sc=73.98 Sec struct Sc=19.00
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGGGtCAGAGGTTCGAATCCTTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna30 (3397730-3397654) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (3397696-3397694) Score: 86.37
HMM Sc=55.76 Sec struct Sc=30.61
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAGGtCACACGTTCGAATCGTGTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna31 (3181055-3180981) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (3181023-3181021) Score: 88.73
HMM Sc=66.89 Sec struct Sc=21.84
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGGAGAGCACTACCTTGACATGGTAGGGGtCACAGGTTCGATCCCTGTCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna32 (3069119-3069030) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (3069085-3069083) Score: 81.68
HMM Sc=52.08 Sec struct Sc=29.60
* | * | * | * | * | * | * | * | *
Seq: GGAGAGATGGCCGAGTGGCttAAGGCGCACGCTTGGAAAGCGTGTGTGCGGGAAACCGTACCGTGGGTTCGAATCCCACTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig6.trna33 (2928617-2928541) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (2928583-2928581) Score: 85.24
HMM Sc=59.01 Sec struct Sc=26.23
* | * | * | * | * | * | * | *
Seq: CGGAGTGTGGCTCAGCCcGGTAGAGCACTGCGTTCGGGACGCAGGGGtCGCAGGTTCAAATCCTGCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna34 (2672113-2672041) Length: 73 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 52.77
HMM Sc=21.33 Sec struct Sc=31.44
* | * | * | * | * | * | * |
Seq: GCGGATTTAGCTTAGTGGCAAAGCAGCGGCTTCCAGGTCGCAGACCGATGTTCGATTCATCGAATCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig6.trna35 (2555306-2555231) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2555273-2555271) Score: 98.50
HMM Sc=76.17 Sec struct Sc=22.33
* | * | * | * | * | * | * | *
Seq: GGGCGATTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGtCGTAGGTTCGAGCCCTACATCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna36 (2381270-2381182) Length: 89 bp
Type: Leu Anticodon: TAA at 35-37 (2381236-2381234) Score: 76.15
HMM Sc=38.13 Sec struct Sc=38.02
* | * | * | * | * | * | * | * | *
Seq: GCCCCCATGGCGAAATTGGTaGACGCAACAGACTTAAAATCTGTAGTCCCGTCAGGGACGTACCCGTTCGACTCGGGTTGGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig6.trna37 (2244431-2244358) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (2244399-2244397) Score: 82.33
HMM Sc=66.40 Sec struct Sc=15.93
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna38 (2085621-2085537) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (2085587-2085585) Score: 77.53
HMM Sc=51.95 Sec struct Sc=25.58
* | * | * | * | * | * | * | * |
Seq: GCGGGCGTGGCGGAATTGGTaGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCGAGTCCCTCCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig6.trna39 (2073412-2073336) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2073378-2073376) Score: 93.15
HMM Sc=76.92 Sec struct Sc=16.23
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTtAGAGCGCCGCCCTGTCACGGCGGAGGcCGCGGGTTCGAGTCCCGTCTCTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna40 (1890403-1890319) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (1890369-1890367) Score: 66.99
HMM Sc=37.50 Sec struct Sc=29.49
* | * | * | * | * | * | * | * |
Seq: GCGCTCGTGGCGGAATTGGTaGACGCGCTGCCTTGAGGTGGCAGTGAGTAACATCGTGAAGGTTCGAGTCCTTTCGAGCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
Contig6.trna41 (1755731-1755655) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (1755697-1755695) Score: 79.83
HMM Sc=55.97 Sec struct Sc=23.86
* | * | * | * | * | * | * | *
Seq: CGGGGTATAGCGCAGCCtGGTAGCGCGGCAGTTTTGGGTACTGCAGGtCGTTGGTTCGAATCCAGCTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna42 (1652827-1652754) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (1652795-1652793) Score: 70.06
HMM Sc=42.02 Sec struct Sc=28.04
* | * | * | * | * | * | * |
Seq: GGCCACGTGGCGGAGTGGTTACGCAACGGTCTGCAAAACCGTGTACACCAGTTCAATTCTGGTCGTGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig6.trna43 (1475737-1475662) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (1475704-1475702) Score: 91.15
HMM Sc=66.67 Sec struct Sc=24.48
* | * | * | * | * | * | * | *
Seq: AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGtCGCAGGTTCGAGCCCTGCCACTCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna44 (826150-826066) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (826116-826114) Score: 77.17
HMM Sc=51.28 Sec struct Sc=25.89
* | * | * | * | * | * | * | * |
Seq: GCCCCTGTGGCGGAACTGGTaGACGCGCTCGACTCAAAATCGAGTTCCGCAAGGAGTGCTGGTTCGATTCCGGCCAGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig6.trna45 (535420-535345) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (535387-535385) Score: 84.51
HMM Sc=67.80 Sec struct Sc=16.71
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna46 (494175-494086) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (494141-494139) Score: 76.06
HMM Sc=44.47 Sec struct Sc=31.59
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCACCGCACTCGAAATGCGGCATAGGTGCAAGCCTATCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig6.trna47 (310691-310616) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (310658-310656) Score: 88.73
HMM Sc=66.87 Sec struct Sc=21.86
* | * | * | * | * | * | * | *
Seq: GCCCAGGTAGCTCAGTTGGTAGAGCATGCGACTGAAAATCGCAGTGtCGGTGGTTCGATCCCGCCCCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna48 (274593-274519) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (274561-274559) Score: 89.35
HMM Sc=62.03 Sec struct Sc=27.32
* | * | * | * | * | * | * |
Seq: GCTGCCGTAGCTCAGTGGTAGAGCACTCCATTGGTAATGGAGAGGtCGACAGTTCAATCCTGTCCGGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig6.trna49 (87547-87473) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (87515-87513) Score: 86.85
HMM Sc=67.18 Sec struct Sc=19.67
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGAGGGTTCGAATCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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