Genome Channel Computational Biosciences
HomeAbout UsAnalysis ToolsInformation ResourcesProjects and Research
[space] Gene Channel • Generation Microbial Gene Prediction System • Grail (Microbial Gene Prediction System Internet Link) • GrailEXP • Genome Analysis Pipeline • DomainParser • PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit) [space]
-

Simple Repetitives

>Contig6.81.start3063305.end3063406
aaccgcacggcccctgctgttcagccgcccctcggcgaccagcaggctcg
gaccggtgcggcgatagacgaagcgcaggcgcaggccggtgcggcgttcc
ca

>Contig6.40.start1560312.end1560442
aagaatggaattctgcggatgggtggtgtgagactggcggcggcggccgc
cgtgttggcttttatgactgcgtggccggggacggcgacacgggtctccg
ccgacaccatcgaatctgcattggtgcgtgc

>Contig6.68.start2793775.end2793876
aagccggcccgttcgaccacgcccatggcgacgactaccacgatcaggac
gatatcgattccgacgacttcgatgatttcgacgaccttgacgacggaga
ct

>Contig6.73.start2912113.end2912213
acgcgcgttctcgaactgctcggcgcggaagcgcggctcggctggatcct
ggccggcgccaacctgctgctggcgggcgcgcagttcgccgagccggtgc
t

>Contig6.35.start1390870.end1390983
acggggaggccgagcgatgcgcgcccgccgcccctgccgcatccaccgcg
aggcgcaggcgcgtgctgcggcttcgccgggatcgtcgccatcggccaga
acgatcacgtcgcg

>Contig6.1.start7628.end7733
agcataccgcggtttccgaccgttcattcggatagctgaagctccaggcg
cggcaacggcggtcgcgttcgcatgccaggccgcaatcgaccggatcgcc
cgaccg

>Contig6.42.start1699406.end1699511
agccaggcgtgtccggcctcggtgacggcgagaccgccgcagtcgtcgat
gacgctaagaaatccgagcccgatcaggtcgcgctcgtaggtcgcgcgcc
gggtcg

>Contig6.6.start178734.end178834
agcggcgcgtccgccatgatcgcggtctcggccgcgcaggccgagggcgc
ggaagtcgtgatggttctgtcgatcgtcgacaggggcgagggagccatgg
c

>Contig6.14.start357761.end357872
aggagcgcgagatcggggccgaccgcgaacggcatcagcaccacgacggt
caggaaaaacagcaccccgatcagcgcgccgccgccgacgcgcagcgcga
cgcgcacatccc

>Contig6.13.start322832.end322967
aggccagacgcgaggcgagcgccgcgcagctcgtgtcgccgcgttcggcg
acaagacgggcggccccggcggtatcgcccgagacgatcggccggatgcc
aagcttgcggatgatgcggcggcattgcccgagggc

>Contig6.70.start2860195.end2860315
atcggccccgcgacccgccgaaccgacgtcaggcgcagatcaggacagcg
atcactgcgccgtctgcgccgtccttgcgctcgcgcggacggtgctgttc
tcggtgcctccggttctgccg

>Contig6.23.start577654.end577759
atgatctcgagcgcgcgttccgcgagacggaggtggagtcgaccgcgccc
gcttcgcagcccgcgccggcagcgccggttgcttcgaagccggtcgccac
ggctgc

>Contig6.62.start2528867.end2528983
attcgatctccgctttcgcatcctcgagtcccgcgacgtcgcgcgcgagc
aaggcgacattcgcgccctcgcgcgcgaaagcccgcgcggctgcccggcc
caccccggccgaaccgc

>Contig6.43.start1707627.end1707731
attcgttagcgctttcccattcgttagcgcttccgcatacccgcacgtgg
cgcatcgcaacacgctccatgccctcaagcttagcaacatcgtcgtcttc
aatca

>Contig6.21.start481303.end481429
catgagcctgcggatgggcgagcacctcgggccggaacgggtgcggccgg
gcgtgcggctgagcggcgagccgccccggcgcatgaccccggcgcggcgg
cggttgctggcggtcctgtcggacgga

>Contig6.82.start3064291.end3064405
ccactggcggcggtgcctgcggccacgccgaagacggagccgacgagcag
gccgtcgccggagacgacggcatagggggcggtcagagtgatggtgttgc
cgggctggacgtagt

>Contig6.71.start2860642.end2860747
ccagaccgccctgcccggaatcgtggtcaacgcgcccagtccgatcgtgc
gccacgcacggccggctccaacgacaccggcgcgcacagcccgccgcggc
acgaca

>Contig6.44.start1766106.end1766125
ccccgctaccgccgccgccg

>Contig6.50.start2082172.end2082278
cccgatccggtcggaccgatcagtaggatgttcgacttcgcgagttcgac
gtcgttgtgcttggtctgatgatttagccgcttgtagtgattgtggacgg
cgaccga

>Contig6.34.start1388482.end1388599
ccgaacggcagcagggcgtcgtgcgcgtagtcgcgtccaccgcagccgag
gcagcggccgggtggcgagcgcaccgcattgcggttgagccattcggcga
tgcaacaggcgaaggcgc

>Contig6.83.start3078491.end3078611
ccgagcgcaggaaagcggagctggcggccgcgaggaagcgcgaggaagac
gagcgccgcgccaaggccgaggaagcggcgcagcaggcccgcgcagccga
ggccgagcgcaaggcggccga

>Contig6.54.start2227819.end2227937
ccggccgagcgcaccaggcgcgccgacagcacccggcccgagcggtcgat
cgtgaacgcgaccgaggccacgcccatgcccgcgcccggcgggaagcgct
tgtggcggttgagatgcgc

>Contig6.84.start3130876.end3130992
ccggctcggccagcccgacatcctgccggtcgatcttcgcgaagctcacg
agcgagccaggcacggcacgctggccggcgcgctgcatgcgccctacccc
gacatcgccgacagcct

>Contig6.19.start456733.end456835
ccggctgaattcgcgcagatcgccggccgcgccggccgcgccacccgcaa
cggcaccttcggcaccacgggacgctgcgcgccgttcgagcccgaactcg
tgg

>Contig6.45.start1819454.end1819589
cctgcgttgccgctgctttccgagctcgccggcgccgcggccggggagtc
ggagagttgctgcgtagcttgtgggggcggcgacgtttccgaggagacga
ccgccgatggcaggccggatcgcaggggcggcgcga

>Contig6.59.start2417815.end2417923
ccttgagcccatgagcgaggccgagcactccgcggccaacaaggtgcagg
gctgcgccagccaggtctggctatcgctccggaccagccgcggccctgac
agcgccccg

>Contig6.63.start2571196.end2571303
cgaaccgcagcaccacgccgagttcttcggactgcacgcggaaaaagccg
gacatgccccagatcgccactgctccgatcagaatcagcagaatccccat
gccgctca

>Contig6.77.start2974492.end2974604
cgacacccgcggcgcggccttggcgctcgcggatatcgcaaccgcaatcg
cacgaggtcacgaatcgcaaggcggcgcggagcgcacggaccctccacat
ggcgtcaggggcg

>Contig6.36.start1401396.end1401504
cgagaaggcggcgaagcagacgcaggcctcgcaggaatcggcggcggccg
aggcgaccgcgatgccgagcgtcgaacaggcgcaggaatcggagcggtcg
gtggcgccg

>Contig6.61.start2524535.end2524643
cgagaaggcggcgaagcagacgcaggcctcgcaggaatcggcggcggccg
aggcgaccgcgatgccgagcgtcgaacaggcgcaggagtcggagcggtcg
gtggcgccg

>Contig6.32.start1088864.end1088981
cgccagcacgcccatgccgtcgaggccgggcatcacgaggtcgaggacaa
cggcatcgatcaccggaccgtcgcctgccgtcatcgcggcgacggcagcg
tcgccgctttcgacgacg

>Contig6.33.start1178164.end1178266
cgccgccgtggtgccggtcgattgcggctggtcggacgtcggatcgtggc
atgcggtttgggagttgtcggacaaggacgggcagggcaatgcggcgcag
ggg

>Contig6.75.start2955020.end2955187
cgcttcggccttcgccctggcctcagcctgagcctttgcctcagctaccg
cttccgcctgagccttcgcggcctctgccttggctgcggcctctgcttgg
gctttcgcatccgccttggcctttgcctctgccgcctcggccttcgccgc
cgctgcggcctcggcggc

>Contig6.17.start408120.end408221
cggatctgacgaaacggccgaagctgaagcgcaggctgaaggccgtggtg
gcctgcggcaacggcaccgccggcgcgttcgcgccgcaggtgatggaggc
ga

>Contig6.4.start66255.end66363
cggatgccgaagccgacgcagaccggcaggctcgtatggcgcttgatgcg
cccgaccgccgcgccaaccgccgtcgaatccgccgccgcgctgccggtga
tcccggtga

>Contig6.74.start2954884.end2954996
cggccctcttcgcctccgcctgggctttcgcatcggcttcagcctttgcc
ttagcctcggctttggccttggcgtccgctttcgccttggcctccgcttt
tgcccttgccctt

>Contig6.5.start90686.end90792
cgggcctcctgtccggcggttcggccgctccggctatgccgccggcctcg
gcgcgtgagagcgagccgctggccaggggcaccgaacccatcggcgctcc
gctgtcc

>Contig6.26.start707597.end707699
cggtcgcgcatagcgggacggcgcgggcgctgatggccgtgctcggcctt
cagaccgcgcaggcggccgccagcctgcgcatcgagcagggggcggtgta
tgt

>Contig6.80.start3040805.end3040909
ctcccacccccgccagccggaccgcaaggccggcaggcgcgcctcgtgcc
ccccaggcgccgccgaccgtcacggctcccctgccgccgccacccccggt
cgccg

>Contig6.66.start2711529.end2711686
ctccggccacgcctaccgcagacacaccagcggctccggccgaagcggca
gcggccgacgaagcgccggcagcttcgccgccgccatcaggccccgtccc
gtcagcggccgacacgacgcccgccaacgcacccgcgccggaaccagcga
caggccca

>Contig6.79.start3040250.end3040383
ctcctcatgcgcgccccaaggcgccgaaacctccgacggccgctccgccg
cgacccgccatacccccggcggccccgccttcgcggccgacagcatcgcc
acagcgagcaacacctcccgctgctccagagacg

>Contig6.15.start371809.end371910
ctcgccacgtccgccagcaactcgcagaacgcgcgggcgccgtgcgcgag
cagccgctctcccttctccgcggaggcctgcgtcgcgtcgccggcggccc
cg

>Contig6.31.start875528.end875636
ctcgcgggcctttgccgcttcggcggcggcgcctgccttgcggccggcgg
cgaagaccgtcgcgatggcgacggccaccgcgacgatcagaaccagcgcg
atccagccg

>Contig6.27.start763592.end763696
ctcggacgttgacttcgtgcccccggccaagctcatcgagcaggcgcgga
aagcgtgacgcgcggccgatccgaaactcgaacccgggcctggcggactt
gccct

>Contig6.47.start1927859.end1927960
ctggttgcggcggcggcgcgggttgacgcgactgacgggtcgattgtcgc
gatcgcctggctggcgggggtggcgtcggtttgggctgatccggctgctc
gg

>Contig6.29.start797875.end797980
gaaccgtccaccccacatcttgttgctcatgtcctgttgctcatgtcttg
ccgctcatgccgtgctcgccactttcatcatgcctgccggacggccgatc
cgctcc

>Contig6.69.start2856849.end2856990
gacgccgtcatcgtggcgctgctcggcggcggcctggccatgctgctgcg
ccgacgcgcggcccacgcggcgctggcggtcgcgctcgcgctgcccgcga
tcgcgatagcgccctcgccgtcccgcgccgacgccgcaagcg

>Contig6.39.start1543550.end1543650
gagcagcagcagcggctgccgctgggcgtcgaaggcgacgatgatgccgg
gctgaagctgttcgccggttccgacgtgccgttgccatgccgacaggagg
t

>Contig6.57.start2326382.end2326490
gatcccgacggcttcgaccccgtccgtctcggcaaggcgccgatcgacac
gccgcgccgcgcgatgggcgatcttctcggacacgccgtccgcttcggcg
tcgctggcg

>Contig6.51.start2086779.end2086885
gatgggccggcgcgatccgctccgctgcccgcgccgccggcgttgccgtc
cgccaacctgccggcgcggctcgatctcaggaacgcattgcgtaccgacg
tgccgct

>Contig6.22.start486819.end486924
gccagcgccgcggccggctcgcccaacgcgtcgccgcttctcgccggcac
cggcaaggatcaggttcacctgctgctggtctgcaccggcgagcgcggcc
tgtccg

>Contig6.10.start247566.end247673
gccagcgccgtggcgcgcgtgtcggccgtggtaaacgcgccgtgctcgaa
cagcacgcgaacgataggctcgctgagaacgatcaggccgagcgtcgcgg
gcaaggcg

>Contig6.11.start258103.end258214
gccccggccttgccgaaggccgcgccgcgcatcggccgcgacgtgaaggt
cggcgccgcctgcggcctggtggtcgcattgatgctcggagcggcctatg
cgtcggtgccgt

>Contig6.30.start850287.end850398
gccccggccttgccgaaggccgcgccgcgcatcggccgcgacgtgaaggt
cggcgccgcctgcggcctggtggtcgcattgatgctcggagcggcctatg
cgtcggtgccgt

>Contig6.76.start2966045.end2966149
gccggcgcggtcgaacgccgccagcggcaccagcacgatgtccggaacga
cctcgaccgcattggcgggcggctcaaaggttcccaaggccccgcgaacc
agcgc

>Contig6.8.start241090.end241205
gccttacaccggcgaggtcgtgccgatcgtcgtggcgccggtgcgaggcc
gcagcgacgccgcccgcgctgccgcggcgtcaggggccgaggcgacgccg
gagcccgccgaggccg

>Contig6.9.start241101.end241209
gcgaggtcgtgccgatcgtcgtggcgccggtgcgaggccgcagcgacgcc
gcccgcgctgccgcggcgtcaggggccgaggcgacgccggagcccgccga
ggccgaaga

>Contig6.56.start2292687.end2292794
gcgcccgctcccatgacaccggccgcgccgatgcccgcggcggcaagtcc
ggtgccgacggccgcccctgccccgagttgcggcgcgccggaaacgaggc
cggtggcg

>Contig6.2.start29798.end29908
gcgcgccaggccgacggcgccgtcgtcgccacctacggcgagaccgtcgt
gctcgccaccgtggtcgccgccaagtcgccgcgcgagggcgtcgacttcc
tgccgctgacc

>Contig6.49.start1977589.end1977689
gcgctcatgcgcttgccgccgtcaacgcgtcgagtttcgcgcgcgccgct
tcgcggtcgaacggttgcggcggcctgcgcgcggcgagggcccgccgggc
g

>Contig6.72.start2872081.end2872183
gcggcgctggcgccgggccacggcgacattccgaaaacgccgagccggga
cggccgcgatccgcgcgtcgagcaaggctacctccacaccgggcccgtcg
gct

>Contig6.37.start1422795.end1422910
gcgtccgaggtgcttggcggcaagggcggcggtggcaagccggatatggc
gcaggccggcggtcccgatggcgccaaggcgggcgcggcgctcgacgcca
tcgccgcggcgatggg

>Contig6.55.start2238725.end2238828
gcgtgggggcgggatcggcgatggtgacggtgttcgcgctggtgaagcgg
taggtcaggcccgatccggccagcaggcgggtgagcgcctgattgcgcgt
cagc

>Contig6.16.start405180.end405311
gctctgcccccccggctcgcgcgcatgatcgtgggcgcgcatcggctcgg
ttcgggtcgggaggccgccgacatcgcggcggtgctgaccgagcggggcc
tgggcggcgacagcgtcgatctcgacgcgcgg

>Contig6.41.start1679033.end1679142
gctgcgcggcaacgtcgagcggccgccgcagcgtcgcgaccacataggcc
ccggtgccccagtccttgccgaccgggatcttgacctgcgacgtgccttc
cttgacctcg

>Contig6.64.start2640029.end2640143
gctggcgaccgagcagccagacatcgcctttgcatggctgcaccgggcgc
actgggtgctgctcgggctcggcctggcgaccgtgttcgcggcggtcgcg
ggaagccatggctgg

>Contig6.53.start2198258.end2198374
ggaagccgaggcgcggaacgaactggcggccgcgcggcggatcggcgtca
gcctgctggcgccgggagaggccggctatcccccgcaccttgcaacgatc
gacgacgccccgccgct

>Contig6.60.start2476010.end2476111
ggcgtcggccaggcgcacgcccgccgcaagcccggaaatgccgccaccgg
cgatatgaacggtccgttccatcagatcaacgcataccgaaggacgatgg
cg

>Contig6.24.start690895.end690995
ggcgtgctcgccgccttcgcggcgctcgcgctgctggacgcgggcctgac
ctggctgcgtcaccgcttcaccatcgccgcgcaggtccggctgcgagcgc
g

>Contig6.78.start3002218.end3002326
gggccgggtggcgcgggcgaacacgccgaccggggtctccggcgaacgcc
cggccgccagcaacccgctgcggatcgccggcgccgccgtgattcccata
tagaccacg

>Contig6.38.start1482504.end1482645
ggtgccgctggtgcgcgccgaggcgccgttcgtcggcaccggcatggaag
gcgtggtcgcgcgcgactcgggcgcggcgatcgccgcccgccgctccggc
gtgatcgaccagatcgacgccacccgcgtcgtcatccgcgcg

>Contig6.58.start2332252.end2332359
gtggcaggagccgttgtcgtcgccatcaccgctcttgcccggctggcgac
gctggccccgcccggtcggaccggacagagcgtggcgcgcgcctgaggcc
ttttcagc

>Contig6.28.start772190.end772293
gtgggggggccgcttcggcggtgggttgaggctgaggcatggctgcttga
gttgccgccgtgtcctccgcttcagccgcgtgtgcgttttgtggaggagc
agga

>Contig6.18.start426497.end426605
gtgtagatgtcgcagcggtcggcgcggatggcggcggcgatcgccaccgc
cgacgtgtcggagccgccccggccgagcgtggtgatccggccggtctgcg
gactgatgc

>Contig6.65.start2662564.end2662664
gttgaccgtggcttcagcgccgccctcgcccgaggcgccatcggaagcgt
cggccgacaacggctggccgccggggccgcccggcgcgccgagcaaggcc
g

>Contig6.67.start2771495.end2771604
gtttgacgcgactgggcgacattctcggcggagatttccgcgccgccgcc
atcccggtacgcgccgaacgcgagggcgtgatcgtcgaggggttcgccgc
cgcaccttcg

>Contig6.86.start3280286.end3280415
tcaccgtccgcaggcccaggccccatccgcaccggttgcgccgcctccgt
ccgcatctgccccgcccgcatccgacccggcggcatcggctgcgcccgca
cccgcgccggccactacgcccgccgagtcg

>Contig6.3.start40267.end40289
tcccccccccccccgcaattccg

>Contig6.20.start465455.end465558
tccggcagcgccgtccgcgcggcttcgcccagcgtcgccgtcgccctgtc
gcccgcgtcattacccgcaagccggacccggtagatccagcgcaccagac
tgcc

>Contig6.7.start201532.end201632
tcggtggcgatggcgcaggaacgggccggcagcgccgcgctcggcgcgct
gtcgggcgcggtggtgctgggtcctgtcggcgcggtcgcaggcgcggtgg
t

>Contig6.46.start1834089.end1834213
tgacactgggtgagccggccggcatcggaccggacatcgcgatcgcggcc
tggctgcgccgcgagagcgattccgttccgcccttctaccttcttggcga
tcgcgccttcatcgcggcacgggca

>Contig6.12.start314753.end314909
tgaggtcgatcctgaattgcgtggttgcgccttcggcttccgccttatcc
ttgttgtccttgtccttgtccttgtccttgtgcttgtcctcttcgtcttt
gtccttgctcttgtcgttcttctcctcccggatcgcgatcgtgccgttga
gccggtt

>Contig6.85.start3205456.end3205616
tgcgccggagccgcgctgctggcgatgctggctcccgccgccgcttacgc
gcgcgaggcggcgccggccgcgccatcgcaccccgcggaaaccacccccg
ccggaccgcgaaacgacggcgaccagccttcggcgaccgccgaccatcac
cggctgccgcc

>Contig6.25.start691609.end691712
tgggaggcggcgcagcgcaccatggccgcaattgcgcgcatcgccgaact
gcgcgccgcggagctcgaggacctggatgctgactcgggccgggactgga
gccc

>Contig6.52.start2184035.end2184185
ttacttcttcttcttggcaaccttcttggcgaccttgcgggtcttcttcg
cagtcttcttcactgcgctcttcgtcttcttcaccttcttcgtcgtcttc
gccttggctttcgccttcttcgccttcttcgccttcttggccatgttgcc
c

>Contig6.48.start1933256.end1933357
ttggctactcggtcttgccgatcctgttcccgctcgccgccggcttcgcc
ctgatcgggccgttcgcggcgctcggcctatacgaactgagctatcggcg
cg

Complex Repetitives

>Contig6.1.f.start1495511.end1495552.ACCN_D14132.1
acaccacgactccgaagaagccgaattcggcgctgcgcaagg

>Contig6.2.f.start1619562.end1619600.ACCN_PT4G1TRNA/PT4TRS/PT4TRPSP/PT4SB/PT4SC/PT4SEA
tggccgagtggtttaaggcaccggtcttgaaaaccggcg

>Contig6.3.f.start2277295.end2277329.ACCN_ISU38187
gcggcatctacgacaacatgaagacggcggtggag

>Contig6.4.f.start2315437.end2315463.ACCN_X17348.1
tgggtcgactggttcaaccatcgccgg

>Contig6.5.r.start1681550.end1681576.ACCN_X17348.1
tctgttcctgacttgtggcgggtttga

-
SiteMap      Feedback      Life Sciences Division      ORNL     Disclaimer     Webmaster