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Intracellular trafficking and secretion

COG Name Group Contig Gene COG ID Score Evalue
Biopolymer transport protein U Contig6 Nwi0703 COG0811 170 2e-43
Biopolymer transport protein U Contig6 Nwi0704 COG0848 136 1e-33
Biopolymer transport protein U Contig6 Nwi1236 COG0811 50 2e-07
Biopolymer transport protein U Contig6 Nwi1267 COG0811 158 6e-40
Biopolymer transport protein U Contig6 Nwi1268 COG0848 118 2e-28
Biopolymer transport protein U Contig6 Nwi2039 COG0848 137 4e-34
Biopolymer transport protein U Contig6 Nwi2040 COG0811 177 1e-45
Biopolymer transport protein U Contig6 Nwi2305 COG0811 158 6e-40
Biopolymer transport protein U Contig6 Nwi2306 COG0848 118 2e-28
Biopolymer transport protein U Contig6 Nwi2719 COG0848 146 5e-37
Biopolymer transport protein U Contig6 Nwi2720 COG0811 185 2e-48
Conjugal transfer/entry exclusion protein U Contig6 Nwi2096 COG5314 145 3e-36

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name Group Contig Gene COG ID Score Evalue
Flagellar biosynthesis pathway component FlhA U Contig6 Nwi0529 COG1298 775 0.0
Flagellar biosynthesis pathway component FlhB U Contig6 Nwi1137 COG1377 345 3e-96
Flagellar biosynthesis pathway component FlhB U Contig6 Nwi1400 COG1377 84 2e-18
Flagellar biosynthesis pathway component FliP U Contig6 Nwi1130 COG1338 270 7e-74
Flagellar biosynthesis pathway component FliQ U Contig6 Nwi1135 COG1987 69 8e-14
Flagellar biosynthesis pathway component FliR U Contig6 Nwi1136 COG1684 135 3e-33
Flagellar biosynthesis/type III secretory pathway ATPase U Contig6 Nwi0100 COG1157 113 3e-26
Flagellar biosynthesis/type III secretory pathway ATPase U Contig6 Nwi0430 COG1157 206 4e-54
Flagellar biosynthesis/type III secretory pathway ATPase U Contig6 Nwi0433 COG1157 249 3e-67
Flagellar biosynthesis/type III secretory pathway ATPase U Contig6 Nwi0526 COG1157 545 1.0e-156
Flagellar biosynthesis/type III secretory pathway lipoprotein U Contig6 Nwi0599 COG1766 370 1.0e-103
Flagellar biosynthesis/type III secretory pathway protein U Contig6 Nwi0597 COG1317 53 2e-08
Flagellar hook-basal body protein U Contig6 Nwi1134 COG1677 55 1e-09
Flagellar motor switch/type III secretory pathway protein U Contig6 Nwi0596 COG1886 86 6e-19
Flagellar motor switch/type III secretory pathway protein U Contig6 Nwi1124 COG1886 38 0.002
Flagellar motor switch/type III secretory pathway protein U Contig6 Nwi1730 COG1886 54 2e-09
Predicted ATPase involved in biogenesis of flagella U Contig6 Nwi1280 COG2874 37 0.002
Predicted ATPase involved in biogenesis of flagella U Contig6 Nwi2015 COG2874 43 6e-05
COG Name Group Contig Gene COG ID Score Evalue
Flp pilus assembly protein ATPase CpaE U Contig6 Nwi0095 COG4963 51 8e-08
Flp pilus assembly protein ATPase CpaE U Contig6 Nwi0299 COG4963 254 1e-68
Flp pilus assembly protein ATPase CpaE U Contig6 Nwi0532 COG4963 38 5e-04
Flp pilus assembly protein ATPase CpaE U Contig6 Nwi0833 COG4963 37 0.002
Flp pilus assembly protein ATPase CpaE U Contig6 Nwi1215 COG4963 42 6e-05
Flp pilus assembly protein ATPase CpaE U Contig6 Nwi1978 COG4963 48 4e-07
Flp pilus assembly protein ATPase CpaF U Contig6 Nwi0298 COG4962 477 1.0e-135
Flp pilus assembly protein ATPase CpaF U Contig6 Nwi2339 COG4962 35 0.007
Flp pilus assembly protein CpaB U Contig6 Nwi0302 COG3745 192 2e-50
Flp pilus assembly protein pilin Flp U Contig6 Nwi0304 COG3847 57 2e-10
Flp pilus assembly protein pilin Flp U Contig6 Nwi1153 COG3847 39 5e-05
Flp pilus assembly protein protease CpaA U Contig6 Nwi0303 COG4960 95 2e-21
Flp pilus assembly protein secretin CpaC U Contig6 Nwi0301 COG4964 338 5e-94
Flp pilus assembly protein secretin CpaC U Contig6 Nwi0305 COG4964 48 2e-07
Flp pilus assembly protein TadB U Contig6 Nwi0296 COG4965 60 2e-10
Flp pilus assembly protein TadB U Contig6 Nwi0297 COG4965 241 4e-65
Flp pilus assembly protein TadC U Contig6 Nwi0296 COG2064 119 3e-28
Flp pilus assembly protein TadC U Contig6 Nwi0297 COG2064 51 2e-07
Flp pilus assembly protein TadD contains TPR repeats U Contig6 Nwi0295 COG5010 143 1e-35
Flp pilus assembly protein TadD contains TPR repeats U Contig6 Nwi0964 COG5010 72 1e-13
Flp pilus assembly protein TadD contains TPR repeats U Contig6 Nwi1742 COG5010 39 7e-04
Flp pilus assembly protein TadD contains TPR repeats U Contig6 Nwi1749 COG5010 39 6e-04
Flp pilus assembly protein TadD contains TPR repeats U Contig6 Nwi2594 COG5010 48 2e-06
Flp pilus assembly protein TadG U Contig6 Nwi0306 COG4961 72 3e-14
Flp pilus assembly protein TadG U Contig6 Nwi0307 COG4961 53 2e-08
Flp pilus assembly protein TadG U Contig6 Nwi1697 COG4961 53 5e-08
Flp pilus assembly protein TadG U Contig6 Nwi2535 COG4961 38 0.002
Flp pilus assembly protein TadG U Contig6 Nwi2536 COG4961 54 3e-09
Hemolysin activation/secretion protein U Contig6 Nwi0875 COG2831 45 3e-05
Hemolysin activation/secretion protein U Contig6 Nwi1851 COG2831 51 4e-07
Lipoprotein signal peptidase U Contig6 Nwi2543 COG0597 97 5e-22
Membrane protein implicated in regulation of membrane protease activity U Contig6 Nwi0930 COG1585 99 1e-22
Multiple antibiotic transporter U Contig6 Nwi1802 COG2095 127 5e-31
Outer membrane protein U Contig6 Nwi1434 COG1538 168 1e-42
Outer membrane protein U Contig6 Nwi1455 COG1538 112 5e-26
Outer membrane protein U Contig6 Nwi1524 COG1538 212 4e-56
Outer membrane protein U Contig6 Nwi2910 COG1538 179 3e-46
Periplasmic component of the Tol biopolymer transport system U Contig6 Nwi2717 COG0823 374 1.0e-105
Periplasmic serine protease (ClpP class) U Contig6 Nwi0059 COG0616 189 2e-49
Periplasmic serine protease (ClpP class) U Contig6 Nwi1543 COG0616 55 5e-09
Periplasmic serine protease (ClpP class) U Contig6 Nwi1899 COG0616 38 7e-04
Periplasmic serine protease (ClpP class) U Contig6 Nwi2589 COG0616 199 2e-52
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake U Contig6 Nwi0829 COG0758 185 2e-48
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake U Contig6 Nwi2010 COG0758 318 3e-88
Preprotein translocase subunit Sec63 U Contig6 Nwi0198 COG5407 57 2e-09
Preprotein translocase subunit Sec63 U Contig6 Nwi0401 COG5407 37 0.002
Preprotein translocase subunit Sec63 U Contig6 Nwi0624 COG5407 52 6e-08
Preprotein translocase subunit Sec63 U Contig6 Nwi1700 COG5407 39 3e-04

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig6 Nwi0390 COG0653 1045 0.0
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig6 Nwi1515 COG0653 36 0.007
Preprotein translocase subunit SecB U Contig6 Nwi0106 COG1952 161 3e-41
Preprotein translocase subunit SecD U Contig6 Nwi1265 COG0342 60 7e-10
Preprotein translocase subunit SecD U Contig6 Nwi1457 COG0342 40 0.001
Preprotein translocase subunit SecD U Contig6 Nwi1521 COG0342 48 4e-06
Preprotein translocase subunit SecD U Contig6 Nwi1522 COG0342 67 6e-12
Preprotein translocase subunit SecD U Contig6 Nwi1768 COG0342 75 7e-15
Preprotein translocase subunit SecD U Contig6 Nwi1769 COG0342 494 1.0e-141
Preprotein translocase subunit SecD U Contig6 Nwi2265 COG0342 37 0.005
Preprotein translocase subunit SecD U Contig6 Nwi2283 COG0342 61 4e-10
Preprotein translocase subunit SecD U Contig6 Nwi2741 COG0342 53 8e-08
Preprotein translocase subunit SecD U Contig6 Nwi3031 COG0342 58 3e-09
Preprotein translocase subunit SecE U Contig6 Nwi1344 COG0690 45 1e-06
Preprotein translocase subunit SecF U Contig6 Nwi1265 COG0341 40 8e-04
Preprotein translocase subunit SecF U Contig6 Nwi1521 COG0341 47 6e-06
Preprotein translocase subunit SecF U Contig6 Nwi1522 COG0341 39 0.001
Preprotein translocase subunit SecF U Contig6 Nwi1768 COG0341 303 1e-83
Preprotein translocase subunit SecF U Contig6 Nwi1769 COG0341 88 2e-18
Preprotein translocase subunit SecF U Contig6 Nwi2283 COG0341 38 0.003
Preprotein translocase subunit SecF U Contig6 Nwi2741 COG0341 42 3e-04
Preprotein translocase subunit SecG U Contig6 Nwi1834 COG1314 67 4e-13
Preprotein translocase subunit SecY U Contig6 Nwi1384 COG0201 442 1.0e-125
Preprotein translocase subunit YajC U Contig6 Nwi1770 COG1862 94 3e-21
Preprotein translocase subunit YidC U Contig6 Nwi3074 COG0706 257 2e-69
COG Name Group Contig Gene COG ID Score Evalue
Protease subunit of ATP-dependent Clp protease U Contig6 Nwi0059 COG0740 36 0.004
Protease subunit of ATP-dependent Clp protease U Contig6 Nwi1543 COG0740 135 3e-33
Protease subunit of ATP-dependent Clp protease U Contig6 Nwi1899 COG0740 285 2e-78
Protease subunit of ATP-dependent Clp protease U Contig6 Nwi2589 COG0740 34 0.009
Sec-independent protein secretion pathway components U Contig6 Nwi1778 COG1826 63 1e-11
Sec-independent protein secretion pathway components U Contig6 Nwi1779 COG1826 60 3e-11
Sec-independent protein secretion pathway component TatC U Contig6 Nwi1777 COG0805 208 3e-55
Signal peptidase I U Contig6 Nwi1919 COG0681 76 3e-15
Signal recognition particle GTPase U Contig6 Nwi0316 COG0552 352 2e-98
Signal recognition particle GTPase U Contig6 Nwi0316 COG0541 217 9e-58
Signal recognition particle GTPase U Contig6 Nwi0532 COG0541 35 0.005
Signal recognition particle GTPase U Contig6 Nwi2779 COG0552 211 1e-55
Signal recognition particle GTPase U Contig6 Nwi2779 COG0541 565 1.0e-162
Tfp pilus assembly protein ATPase PilM U Contig6 Nwi1057 COG4972 35 0.008
Tfp pilus assembly protein ATPase PilU U Contig6 Nwi0298 COG5008 62 7e-11
Tfp pilus assembly protein FimV U Contig6 Nwi1772 COG3170 37 0.004
Tfp pilus assembly protein FimV U Contig6 Nwi2718 COG3170 35 0.007
Tfp pilus assembly protein FimV U Contig6 Nwi3029 COG3170 37 0.002
Tfp pilus assembly protein PilF U Contig6 Nwi0295 COG3063 40 2e-04
Tfp pilus assembly protein PilF U Contig6 Nwi0964 COG3063 52 2e-07
Tfp pilus assembly protein PilF U Contig6 Nwi0984 COG3063 38 4e-04
Tfp pilus assembly protein PilF U Contig6 Nwi1393 COG3063 45 5e-06
Tfp pilus assembly protein PilF U Contig6 Nwi1742 COG3063 38 0.002
Tfp pilus assembly protein PilF U Contig6 Nwi2594 COG3063 43 4e-05
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig6 Nwi0298 COG2805 70 3e-13
Type III secretory pathway component EscR U Contig6 Nwi1130 COG4790 180 1e-46
Type III secretory pathway component EscS U Contig6 Nwi1135 COG4794 51 2e-08
Type III secretory pathway component EscT U Contig6 Nwi1136 COG4791 81 1e-16
Type III secretory pathway component EscU U Contig6 Nwi1137 COG4792 211 7e-56
Type III secretory pathway component EscU U Contig6 Nwi1400 COG4792 56 5e-10
Type III secretory pathway component EscV U Contig6 Nwi0529 COG4789 493 1.0e-140
Type III secretory pathway lipoprotein EscJ U Contig6 Nwi0599 COG4669 63 6e-11
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig6 Nwi0298 COG2804 80 4e-16
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig6 Nwi2485 COG2804 36 0.009
Type II secretory pathway component HofQ U Contig6 Nwi0301 COG4796 84 2e-17
Type II secretory pathway component PulD U Contig6 Nwi0301 COG1450 122 9e-29
Type II secretory pathway component PulF U Contig6 Nwi0297 COG1459 35 0.008
Type IV secretory pathway protease TraF U Contig6 Nwi0849 COG4959 141 4e-35
Type IV secretory pathway TrbF protein U Contig6 Nwi2093 COG3701 314 3e-87
Type IV secretory pathway TrbL protein U Contig6 Nwi2094 COG3846 212 4e-56
Type IV secretory pathway VirB10 protein U Contig6 Nwi0860 COG2948 219 3e-58
Type IV secretory pathway VirB10 protein U Contig6 Nwi2091 COG2948 218 5e-58
Type IV secretory pathway VirB10 protein U Contig6 Nwi2777 COG2948 34 0.008
Type IV secretory pathway VirB10 protein U Contig6 Nwi3109 COG2948 38 0.001
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig6 Nwi0298 COG0630 216 4e-57
Type IV secretory pathway VirB4 protein U Contig6 Nwi0083 COG3451 42 2e-04
Type IV secretory pathway VirB4 protein U Contig6 Nwi1248 COG3451 36 0.007
Type IV secretory pathway VirB4 protein U Contig6 Nwi2097 COG3451 90 6e-20
Type IV secretory pathway VirB4 protein U Contig6 Nwi2098 COG3451 318 3e-88
Type IV secretory pathway VirB4 protein U Contig6 Nwi2231 COG3451 46 6e-06
Type IV secretory pathway VirB9 protein U Contig6 Nwi0859 COG3504 38 3e-04
Type IV secretory pathway VirB9 protein U Contig6 Nwi2092 COG3504 199 2e-52
Type IV secretory pathway VirD2 pilin (relaxase) U Contig6 Nwi0854 COG3843 163 1e-41
Type IV secretory pathway VirD2 pilin (relaxase) U Contig6 Nwi2851 COG3843 209 4e-55
Type IV secretory pathway VirD4 protein U Contig6 Nwi0730 COG3505 70 2e-13
Type IV secretory pathway VirD4 protein U Contig6 Nwi2858 COG3505 49 6e-08
Type V secretory pathway adhesin AidA U Contig6 Nwi2845 COG3468 44 3e-05

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