Transcription

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
AraC-type DNA-binding domain-containing protein	K	Contig6	Nwi0203	COG2207	70	2e-13

BASAL TRANSCRIPTION FACTORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig6	Nwi0662	COG1813	35	0.008
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig6	Nwi0826	COG1813	32	0.010
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig6	Nwi2986	COG1813	39	8e-04
Transcription antiterminator	K	Contig6	Nwi1345	COG0250	194	3e-51
Transcription antiterminator	K	Contig6	Nwi1549	COG0250	83	2e-17
Transcription elongation factor	K	Contig6	Nwi0022	COG0195	198	9e-52
Transcription elongation factor	K	Contig6	Nwi0922	COG0782	86	1e-18
Transcription elongation factor	K	Contig6	Nwi2450	COG0782	148	2e-37
Transcription termination factor	K	Contig6	Nwi0100	COG1158	714	0.0
Transcription termination factor	K	Contig6	Nwi0433	COG1158	64	3e-11
Transcription termination factor	K	Contig6	Nwi0526	COG1158	88	1e-18
Transcription termination factor	K	Contig6	Nwi1722	COG0781	117	4e-28

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Biotin operon repressor	K	Contig6	Nwi0362	COG1654	35	0.005
Cold shock protein	K	Contig6	Nwi0311	COG1278	100	4e-23
Cold shock protein	K	Contig6	Nwi1599	COG1278	97	3e-22
Cold shock protein	K	Contig6	Nwi1609	COG1278	81	4e-17
Cold shock protein	K	Contig6	Nwi2375	COG1278	92	7e-21
Cold shock protein	K	Contig6	Nwi3054	COG1278	98	1e-22
DNA-binding HTH domain-containing protein	K	Contig6	Nwi0241	COG2771	62	2e-11
DNA-binding HTH domain-containing protein	K	Contig6	Nwi0627	COG2771	65	5e-12
DNA-binding HTH domain-containing protein	K	Contig6	Nwi0957	COG2771	56	4e-09
DNA-binding HTH domain-containing protein	K	Contig6	Nwi1028	COG2771	57	1e-09
DNA-binding winged-HTH domains	K	Contig6	Nwi0087	COG3710	62	5e-11
DNA-binding winged-HTH domains	K	Contig6	Nwi0348	COG3710	61	6e-11
DNA-binding winged-HTH domains	K	Contig6	Nwi0511	COG3710	78	4e-16
DNA-binding winged-HTH domains	K	Contig6	Nwi0525	COG3710	52	6e-08
DNA-binding winged-HTH domains	K	Contig6	Nwi1187	COG3710	56	3e-09
DNA-binding winged-HTH domains	K	Contig6	Nwi1196	COG3710	64	9e-12
DNA-binding winged-HTH domains	K	Contig6	Nwi2518	COG3710	66	3e-12
DNA-binding winged-HTH domains	K	Contig6	Nwi2913	COG3710	50	2e-07

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit	K	Contig6	Nwi1388	COG0202	345	3e-96
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	Contig6	Nwi1350	COG0085	782	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	Contig6	Nwi1351	COG0086	884	0.0
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig6	Nwi2430	COG0568	254	5e-69
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig6	Nwi2440	COG0568	352	4e-98
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi0656	COG1191	34	0.006
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi0894	COG1191	41	4e-05
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi1340	COG1191	35	0.003
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi1734	COG1191	43	2e-05
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi1966	COG1191	34	0.002
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi2051	COG1191	41	4e-05
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi2248	COG1191	44	7e-06
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi2303	COG1191	41	5e-05
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi2430	COG1191	86	3e-18
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi2440	COG1191	125	1e-29
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi2883	COG1191	35	0.002
DNA-directed RNA polymerase specialized sigma subunit	K	Contig6	Nwi3056	COG1191	43	1e-05
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi0656	COG1595	89	2e-19
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi0723	COG1595	33	0.006
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi0894	COG1595	86	1e-18
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi0902	COG1595	36	0.001
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi1340	COG1595	82	2e-17
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi1734	COG1595	87	1e-18
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi1966	COG1595	45	1e-06
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi2048	COG1595	54	8e-09
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi2051	COG1595	85	3e-18
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi2138	COG1595	97	1e-21
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi2248	COG1595	120	5e-29
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi2303	COG1595	88	2e-19
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi2771	COG1595	44	1e-05
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi2773	COG1595	126	9e-31
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi2883	COG1595	90	1e-19
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi3045	COG1595	85	3e-18
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi3056	COG1595	109	1e-25
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig6	Nwi3079	COG1595	90	7e-20
DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog	K	Contig6	Nwi0177	COG1508	453	1.0e-128
DNA-directed RNA polymerase subunit E'	K	Contig6	Nwi0028	COG1095	53	9e-08
DNA-directed RNA polymerase subunit E'	K	Contig6	Nwi0206	COG1095	44	4e-05
DNA-directed RNA polymerase subunit E'	K	Contig6	Nwi1713	COG1095	41	4e-04
DNA-directed RNA polymerase subunit K/omega	K	Contig6	Nwi1923	COG1758	67	4e-13

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA helicase TIP49 TBP-interacting protein	K	Contig6	Nwi0369	COG1224	39	0.001
DNA helicase TIP49 TBP-interacting protein	K	Contig6	Nwi1392	COG1224	35	0.010
DNA helicase TIP49 TBP-interacting protein	K	Contig6	Nwi1898	COG1224	36	0.006
DNA helicase TIP49 TBP-interacting protein	K	Contig6	Nwi2710	COG1224	50	4e-07
DNA helicase TIP49 TBP-interacting protein	K	Contig6	Nwi2724	COG1224	46	3e-06
DNA or RNA helicase of superfamily II	K	Contig6	Nwi0187	COG1061	55	3e-08
DNA or RNA helicase of superfamily II	K	Contig6	Nwi0251	COG1061	70	5e-13
DNA or RNA helicase of superfamily II	K	Contig6	Nwi0270	COG1061	169	5e-43
DNA or RNA helicase of superfamily II	K	Contig6	Nwi0314	COG1061	69	7e-13
DNA or RNA helicase of superfamily II	K	Contig6	Nwi0359	COG1061	49	2e-06
DNA or RNA helicase of superfamily II	K	Contig6	Nwi0409	COG1061	47	5e-06
DNA or RNA helicase of superfamily II	K	Contig6	Nwi0427	COG1061	45	2e-05
DNA or RNA helicase of superfamily II	K	Contig6	Nwi1255	COG1061	132	7e-32
DNA or RNA helicase of superfamily II	K	Contig6	Nwi1513	COG1061	72	3e-13
DNA or RNA helicase of superfamily II	K	Contig6	Nwi1515	COG1061	74	4e-14
DNA or RNA helicase of superfamily II	K	Contig6	Nwi1657	COG1061	89	9e-19
DNA or RNA helicase of superfamily II	K	Contig6	Nwi2131	COG1061	90	8e-19
DNA or RNA helicase of superfamily II	K	Contig6	Nwi2495	COG1061	59	2e-09
dsRNA-specific ribonuclease	K	Contig6	Nwi1918	COG0571	222	3e-59
Exoribonuclease II	K	Contig6	Nwi1713	COG4776	214	1e-56
Exoribonuclease R	K	Contig6	Nwi0028	COG0557	40	4e-04
Exoribonuclease R	K	Contig6	Nwi0206	COG0557	45	2e-05
Exoribonuclease R	K	Contig6	Nwi1713	COG0557	585	1.0e-168
Factor for inversion stimulation Fis transcriptional activator	K	Contig6	Nwi0595	COG2901	43	3e-05
Factor for inversion stimulation Fis transcriptional activator	K	Contig6	Nwi1445	COG2901	73	4e-14
Factor for inversion stimulation Fis transcriptional activator	K	Contig6	Nwi2470	COG2901	39	9e-05
Glycerol-3-phosphate responsive antiterminator (mRNA-binding)	K	Contig6	Nwi2390	COG1954	34	0.010
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig6	Nwi1922	COG0317	776	0.0
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig6	Nwi2331	COG0317	72	2e-14
Histone acetyltransferase	K	Contig6	Nwi0191	COG1243	45	9e-06
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig6	Nwi0316	COG0378	36	0.003
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig6	Nwi0535	COG0378	37	0.006
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig6	Nwi0756	COG0378	39	5e-04
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig6	Nwi0917	COG0378	43	4e-05
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig6	Nwi2240	COG0378	42	5e-05
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	K	Contig6	Nwi2744	COG1842	35	0.007
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	K	Contig6	Nwi2846	COG1842	37	0.006
Predicted nucleic-acid-binding protein implicated in transcription termination	K	Contig6	Nwi0023	COG2740	75	4e-15
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig6	Nwi2846	COG1293	45	2e-05
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi0656	COG4941	50	6e-08
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi1734	COG4941	37	0.001
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi2048	COG4941	33	0.008
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi2051	COG4941	48	5e-07
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi2138	COG4941	55	1e-08
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi2248	COG4941	40	9e-05
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi2773	COG4941	38	4e-04
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi2883	COG4941	46	2e-06
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi3056	COG4941	36	0.002
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig6	Nwi3079	COG4941	43	1e-05
Predicted transcriptional regulator BolA superfamily protein	K	Contig6	Nwi0400	COG5007	45	8e-07
Predicted transcriptional regulator BolA superfamily protein	K	Contig6	Nwi1309	COG5007	66	4e-13
Predicted transcriptional regulator protein containing CBS domains	K	Contig6	Nwi1023	COG4109	41	6e-05
Predicted transcriptional regulator protein containing CBS domains	K	Contig6	Nwi1031	COG4109	60	1e-10
Predicted transcriptional regulator protein containing CBS domains	K	Contig6	Nwi1321	COG4109	43	7e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig6	Nwi1590	COG4109	41	2e-04
Predicted transcriptional regulator protein containing CBS domains	K	Contig6	Nwi2394	COG4109	46	3e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig6	Nwi2728	COG4109	45	9e-06
Predicted transcriptional regulator protein	K	Contig6	Nwi0262	COG5340	64	1e-11
Predicted transcriptional regulator protein	K	Contig6	Nwi0892	COG4742	37	5e-04
Predicted transcriptional regulator protein	K	Contig6	Nwi2227	COG4957	189	1e-49
Predicted transcriptional regulator protein	K	Contig6	Nwi2653	COG5340	33	0.008
Predicted transcriptional regulator protein	K	Contig6	Nwi2854	COG5340	42	4e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi2885	COG4189	33	0.007
Predicted transcriptional regulator protein	K	Contig6	Nwi2907	COG4189	35	0.002
Predicted transcriptional regulator protein	K	Contig6	Nwi3123	COG4189	43	5e-06
Predicted transcriptional regulator protein	K	Contig6	Nwi3123	COG3888	32	0.009
Predicted transcription regulator containing HTH domain	K	Contig6	Nwi3111	COG5499	85	1e-18
Putative transcription activator	K	Contig6	Nwi0858	COG0819	192	2e-50
Rad3-related DNA helicase	K	Contig6	Nwi0314	COG1199	37	0.002
Rad3-related DNA helicase	K	Contig6	Nwi1255	COG1199	40	6e-04
Rad3-related DNA helicase	K	Contig6	Nwi1515	COG1199	38	0.002
Rad3-related DNA helicase	K	Contig6	Nwi1657	COG1199	37	0.003
RecG-like helicase	K	Contig6	Nwi0314	COG1200	46	6e-06
RecG-like helicase	K	Contig6	Nwi0427	COG1200	64	4e-11
RecG-like helicase	K	Contig6	Nwi1513	COG1200	324	3e-89
RecG-like helicase	K	Contig6	Nwi1515	COG1200	770	0.0
RecG-like helicase	K	Contig6	Nwi1657	COG1200	56	4e-09
RecG-like helicase	K	Contig6	Nwi2495	COG1200	46	2e-05
Regulators of stationary/sporulation gene expression	K	Contig6	Nwi3083	COG2002	40	5e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0087	COG4567	56	2e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0111	COG4567	241	3e-65
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0114	COG4567	45	2e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0119	COG4567	40	6e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0241	COG4567	81	8e-17
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0348	COG4567	58	8e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0511	COG4567	60	1e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0520	COG4567	46	9e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0522	COG4567	53	6e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0523	COG4567	38	0.002
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0525	COG4567	65	5e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0556	COG4567	40	7e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0574	COG4567	40	6e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi0992	COG4567	52	1e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1027	COG4567	56	1e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1028	COG4567	57	8e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1138	COG4567	43	8e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1187	COG4567	61	6e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1196	COG4567	58	8e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1334	COG4567	42	2e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1431	COG4567	48	2e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1432	COG4567	41	1e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1445	COG4567	61	2e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1447	COG4567	74	2e-14
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1755	COG4567	35	0.002
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1756	COG4567	58	7e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi1774	COG4567	33	0.005
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi2518	COG4567	58	5e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi2540	COG4567	47	4e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi2771	COG4567	36	0.004
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi2913	COG4567	68	6e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig6	Nwi2946	COG4567	48	3e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0087	COG3437	78	4e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0111	COG3437	62	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0114	COG3437	70	6e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0119	COG3437	78	3e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0241	COG3437	67	8e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0348	COG3437	85	3e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0511	COG3437	100	1e-22
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0520	COG3437	63	8e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0522	COG3437	90	4e-20
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0523	COG3437	59	5e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0525	COG3437	82	3e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0556	COG3437	42	1e-05
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0574	COG3437	70	8e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0749	COG3437	64	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi0992	COG3437	69	7e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1027	COG3437	62	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1028	COG3437	72	2e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1138	COG3437	75	3e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1187	COG3437	85	4e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1196	COG3437	65	4e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1334	COG3437	68	3e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1431	COG3437	73	8e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1432	COG3437	110	2e-25
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1445	COG3437	68	1e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1447	COG3437	71	2e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1755	COG3437	57	6e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1756	COG3437	54	2e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi1774	COG3437	46	8e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi2518	COG3437	85	5e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi2540	COG3437	70	5e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi2771	COG3437	46	2e-06
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi2913	COG3437	71	6e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi2946	COG3437	65	2e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig6	Nwi3139	COG3437	133	1e-32
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0087	COG2197	89	3e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0111	COG2197	71	5e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0114	COG2197	68	3e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0119	COG2197	68	2e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0241	COG2197	131	5e-32
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0348	COG2197	88	4e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0511	COG2197	78	6e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0520	COG2197	62	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0522	COG2197	77	5e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0523	COG2197	81	2e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0525	COG2197	82	5e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0556	COG2197	35	0.002
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0574	COG2197	58	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0595	COG2197	43	6e-05
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0627	COG2197	60	1e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0749	COG2197	59	8e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0957	COG2197	132	3e-32
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi0992	COG2197	73	5e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1027	COG2197	56	9e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1028	COG2197	118	2e-28
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1138	COG2197	60	7e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1187	COG2197	77	8e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1196	COG2197	68	5e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1334	COG2197	70	7e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1431	COG2197	70	5e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1432	COG2197	78	1e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1445	COG2197	70	5e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1447	COG2197	63	4e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1755	COG2197	62	2e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1756	COG2197	60	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi1774	COG2197	42	1e-05
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi2518	COG2197	83	2e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi2540	COG2197	72	2e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi2771	COG2197	41	8e-05
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi2913	COG2197	75	5e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig6	Nwi2946	COG2197	58	3e-10
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0087	COG4565	63	1e-11
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0111	COG4565	64	9e-12
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0114	COG4565	51	3e-07
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0119	COG4565	50	6e-07
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0241	COG4565	63	1e-11
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0348	COG4565	51	6e-08
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0511	COG4565	56	2e-09
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0520	COG4565	38	0.003
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0522	COG4565	67	3e-13
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0523	COG4565	62	9e-11
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0525	COG4565	69	3e-13
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0556	COG4565	44	3e-06
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0574	COG4565	42	1e-05
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0749	COG4565	37	0.003
Response regulator of citrate/malate metabolism	K	Contig6	Nwi0992	COG4565	64	3e-11
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1027	COG4565	54	5e-09
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1028	COG4565	50	1e-07
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1138	COG4565	51	4e-07
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1187	COG4565	59	2e-10
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1196	COG4565	55	5e-09
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1334	COG4565	50	1e-07
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1431	COG4565	63	5e-12
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1432	COG4565	56	5e-09
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1445	COG4565	50	4e-07
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1447	COG4565	66	7e-12
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1755	COG4565	49	9e-08
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1756	COG4565	66	3e-12
Response regulator of citrate/malate metabolism	K	Contig6	Nwi1774	COG4565	34	0.002
Response regulator of citrate/malate metabolism	K	Contig6	Nwi2518	COG4565	70	1e-13
Response regulator of citrate/malate metabolism	K	Contig6	Nwi2540	COG4565	57	4e-10
Response regulator of citrate/malate metabolism	K	Contig6	Nwi2771	COG4565	56	4e-09
Response regulator of citrate/malate metabolism	K	Contig6	Nwi2913	COG4565	74	9e-15
Response regulator of citrate/malate metabolism	K	Contig6	Nwi2946	COG4565	44	5e-06
Response regulator of citrate/malate metabolism	K	Contig6	Nwi3058	COG4565	48	3e-06
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0087	COG3279	62	5e-11
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0111	COG3279	49	2e-07
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0114	COG3279	59	1e-09
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0119	COG3279	47	5e-06
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0241	COG3279	59	2e-10
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0348	COG3279	64	1e-11
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0511	COG3279	52	3e-08
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0520	COG3279	37	0.005
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0522	COG3279	57	4e-10
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0523	COG3279	56	6e-09
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0525	COG3279	51	6e-08
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0556	COG3279	41	4e-05
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0574	COG3279	51	4e-08
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0749	COG3279	58	1e-09
Response regulator of the LytR/AlgR family	K	Contig6	Nwi0992	COG3279	55	2e-08
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1027	COG3279	51	4e-08
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1028	COG3279	67	7e-13
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1138	COG3279	60	9e-10
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1187	COG3279	51	6e-08
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1196	COG3279	46	3e-06
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1334	COG3279	50	1e-07
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1431	COG3279	49	1e-07
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1432	COG3279	61	2e-10
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1445	COG3279	50	3e-07
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1447	COG3279	56	6e-09
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1755	COG3279	41	4e-05
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1756	COG3279	52	8e-08
Response regulator of the LytR/AlgR family	K	Contig6	Nwi1774	COG3279	33	0.005
Response regulator of the LytR/AlgR family	K	Contig6	Nwi2518	COG3279	49	3e-07
Response regulator of the LytR/AlgR family	K	Contig6	Nwi2771	COG3279	43	3e-05
Response regulator of the LytR/AlgR family	K	Contig6	Nwi2913	COG3279	47	1e-06
Response regulator of the LytR/AlgR family	K	Contig6	Nwi2946	COG3279	51	4e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0087	COG0745	187	8e-49
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0111	COG0745	69	2e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0114	COG0745	79	1e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0119	COG0745	83	5e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0241	COG0745	98	4e-22
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0348	COG0745	209	2e-55
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0511	COG0745	234	5e-63
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0520	COG0745	78	2e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0522	COG0745	85	2e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0523	COG0745	69	6e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0525	COG0745	209	1e-55
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0556	COG0745	38	2e-04
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0574	COG0745	76	1e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0595	COG0745	39	0.001
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0749	COG0745	73	4e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0982	COG0745	46	5e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi0992	COG0745	87	3e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1027	COG0745	65	2e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1028	COG0745	81	5e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1138	COG0745	77	7e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1187	COG0745	224	4e-60
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1196	COG0745	211	4e-56
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1334	COG0745	78	2e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1431	COG0745	73	8e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1432	COG0745	112	5e-26
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1445	COG0745	84	2e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1447	COG0745	82	1e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1755	COG0745	67	7e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1756	COG0745	76	3e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi1774	COG0745	45	2e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi2518	COG0745	189	1e-49
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi2540	COG0745	81	2e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi2771	COG0745	38	0.001
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi2913	COG0745	189	2e-49
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi2946	COG0745	65	2e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig6	Nwi3058	COG0745	36	0.007
Serine/threonine protein kinase	K	Contig6	Nwi1765	COG0515	41	1e-04
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi0595	COG4650	137	2e-33
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi0992	COG4650	141	1e-34
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1392	COG4650	38	0.001
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1445	COG4650	137	2e-33
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1447	COG4650	129	5e-31
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1976	COG4650	42	5e-05
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig6	Nwi0466	COG1974	62	3e-11
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig6	Nwi1841	COG1974	202	3e-53
Superfamily II DNA and RNA helicase	K	Contig6	Nwi0187	COG0513	107	4e-24
Superfamily II DNA and RNA helicase	K	Contig6	Nwi0251	COG0513	60	5e-10
Superfamily II DNA and RNA helicase	K	Contig6	Nwi0314	COG0513	399	1.0e-112
Superfamily II DNA and RNA helicase	K	Contig6	Nwi0359	COG0513	42	1e-04
Superfamily II DNA and RNA helicase	K	Contig6	Nwi0409	COG0513	67	7e-12
Superfamily II DNA and RNA helicase	K	Contig6	Nwi1513	COG0513	81	3e-16
Superfamily II DNA and RNA helicase	K	Contig6	Nwi1515	COG0513	70	7e-13
Superfamily II DNA and RNA helicase	K	Contig6	Nwi1657	COG0513	411	1.0e-116
Superfamily II DNA and RNA helicase	K	Contig6	Nwi1941	COG0513	38	0.002
Superfamily II DNA and RNA helicase	K	Contig6	Nwi2131	COG0513	62	1e-10
Superfamily II DNA and RNA helicase	K	Contig6	Nwi2495	COG0513	63	1e-10
Superfamily II DNA/RNA helicase SNF2 family	K	Contig6	Nwi0251	COG0553	130	3e-31
Superfamily II DNA/RNA helicase SNF2 family	K	Contig6	Nwi0270	COG0553	39	0.002
Superfamily II DNA/RNA helicase SNF2 family	K	Contig6	Nwi0314	COG0553	39	0.001
Superfamily II DNA/RNA helicase SNF2 family	K	Contig6	Nwi1255	COG0553	39	0.001
Superfamily II DNA/RNA helicase SNF2 family	K	Contig6	Nwi1657	COG0553	47	3e-06
Transcriptional accessory protein	K	Contig6	Nwi0028	COG2183	61	4e-10
Transcriptional accessory protein	K	Contig6	Nwi0206	COG2183	76	5e-15
Transcriptional activator adenine-specific DNA methyltransferase	K	Contig6	Nwi1554	COG4725	55	2e-08
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi0589	COG3284	36	0.010
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi0595	COG3284	232	6e-62
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi0992	COG3284	244	1e-65
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi1392	COG3284	36	0.006
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi1445	COG3284	266	2e-72
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi1447	COG3284	231	8e-62
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi1898	COG3284	37	0.003
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi1976	COG3284	41	1e-04
Transcriptional activator of acetoin/glycerol metabolism	K	Contig6	Nwi2470	COG3284	40	5e-05
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	K	Contig6	Nwi0203	COG4977	50	2e-07
Transcriptional regulator effector-binding domain/component	K	Contig6	Nwi2777	COG4978	53	2e-08

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATP-dependent transcriptional regulator protein	K	Contig6	Nwi0241	COG2909	49	3e-07
ATP-dependent transcriptional regulator protein	K	Contig6	Nwi0627	COG2909	46	3e-06
ATP-dependent transcriptional regulator protein	K	Contig6	Nwi0957	COG2909	50	3e-07
ATP-dependent transcriptional regulator protein	K	Contig6	Nwi1028	COG2909	43	2e-05
Predicted transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains	K	Contig6	Nwi1726	COG1327	191	1e-50
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain	K	Contig6	Nwi3093	COG3609	56	6e-10
Predicted transcriptional regulator protein containing the HTH domain	K	Contig6	Nwi1803	COG1386	158	3e-40
Predicted transcriptional regulator protein	K	Contig6	Nwi0019	COG1396	53	6e-09
Predicted transcriptional regulator protein	K	Contig6	Nwi0019	COG1476	36	0.001
Predicted transcriptional regulator protein	K	Contig6	Nwi0094	COG1475	133	1e-32
Predicted transcriptional regulator protein	K	Contig6	Nwi0254	COG1475	75	2e-14
Predicted transcriptional regulator protein	K	Contig6	Nwi0265	COG1396	37	0.004
Predicted transcriptional regulator protein	K	Contig6	Nwi0265	COG1476	42	6e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi0362	COG2345	33	0.008
Predicted transcriptional regulator protein	K	Contig6	Nwi0466	COG2932	166	8e-43
Predicted transcriptional regulator protein	K	Contig6	Nwi0493	COG3355	40	1e-04
Predicted transcriptional regulator protein	K	Contig6	Nwi0662	COG1396	53	3e-08
Predicted transcriptional regulator protein	K	Contig6	Nwi0662	COG3620	42	5e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi0662	COG1395	40	2e-04
Predicted transcriptional regulator protein	K	Contig6	Nwi0662	COG1476	47	2e-06
Predicted transcriptional regulator protein	K	Contig6	Nwi0743	COG1959	130	6e-32
Predicted transcriptional regulator protein	K	Contig6	Nwi0816	COG1475	67	1e-12
Predicted transcriptional regulator protein	K	Contig6	Nwi0826	COG1396	47	3e-07
Predicted transcriptional regulator protein	K	Contig6	Nwi0830	COG1396	38	1e-04
Predicted transcriptional regulator protein	K	Contig6	Nwi0830	COG1476	32	0.009
Predicted transcriptional regulator protein	K	Contig6	Nwi0843	COG1396	40	4e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi0843	COG3620	34	0.002
Predicted transcriptional regulator protein	K	Contig6	Nwi0843	COG1476	35	0.001
Predicted transcriptional regulator protein	K	Contig6	Nwi0843	COG3655	33	0.006
Predicted transcriptional regulator protein	K	Contig6	Nwi0845	COG3311	38	2e-04
Predicted transcriptional regulator protein	K	Contig6	Nwi0881	COG1725	73	6e-14
Predicted transcriptional regulator protein	K	Contig6	Nwi0892	COG0640	44	3e-06
Predicted transcriptional regulator protein	K	Contig6	Nwi0931	COG3620	45	1e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi0931	COG2524	57	2e-09
Predicted transcriptional regulator protein	K	Contig6	Nwi1023	COG3620	51	8e-08
Predicted transcriptional regulator protein	K	Contig6	Nwi1023	COG2524	77	1e-15
Predicted transcriptional regulator protein	K	Contig6	Nwi1031	COG3620	43	1e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi1031	COG2524	55	3e-09
Predicted transcriptional regulator protein	K	Contig6	Nwi1263	COG1396	40	4e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi1321	COG3620	43	1e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi1321	COG2524	45	2e-06
Predicted transcriptional regulator protein	K	Contig6	Nwi1409	COG0789	61	6e-11
Predicted transcriptional regulator protein	K	Contig6	Nwi1546	COG1475	61	1e-10
Predicted transcriptional regulator protein	K	Contig6	Nwi1590	COG2524	46	5e-06
Predicted transcriptional regulator protein	K	Contig6	Nwi1629	COG3355	38	0.003
Predicted transcriptional regulator protein	K	Contig6	Nwi1709	COG2944	63	6e-12
Predicted transcriptional regulator protein	K	Contig6	Nwi1709	COG1476	36	0.001
Predicted transcriptional regulator protein	K	Contig6	Nwi1841	COG2932	53	2e-08
Predicted transcriptional regulator protein	K	Contig6	Nwi1957	COG1396	44	2e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi1957	COG1395	35	0.008
Predicted transcriptional regulator protein	K	Contig6	Nwi1957	COG1476	36	0.007
Predicted transcriptional regulator protein	K	Contig6	Nwi2084	COG2865	51	2e-08
Predicted transcriptional regulator protein	K	Contig6	Nwi2123	COG1475	43	9e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi2141	COG3311	44	3e-06
Predicted transcriptional regulator protein	K	Contig6	Nwi2146	COG3620	44	2e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi2146	COG2524	70	3e-13
Predicted transcriptional regulator protein	K	Contig6	Nwi2394	COG3620	35	0.007
Predicted transcriptional regulator protein	K	Contig6	Nwi2394	COG2524	53	4e-08
Predicted transcriptional regulator protein	K	Contig6	Nwi2653	COG1959	130	5e-32
Predicted transcriptional regulator protein	K	Contig6	Nwi2728	COG2524	40	4e-04
Predicted transcriptional regulator protein	K	Contig6	Nwi2859	COG1475	44	3e-05
Predicted transcriptional regulator protein	K	Contig6	Nwi2907	COG0640	51	2e-08
Predicted transcriptional regulator protein	K	Contig6	Nwi2907	COG1510	33	0.006
Predicted transcriptional regulator protein	K	Contig6	Nwi2933	COG1475	61	4e-11
Predicted transcriptional regulator protein	K	Contig6	Nwi2986	COG1396	48	1e-06
Predicted transcriptional regulator protein	K	Contig6	Nwi2986	COG1476	41	2e-04
Predicted transcriptional regulator protein	K	Contig6	Nwi3009	COG1695	63	1e-11
Predicted transcriptional regulator protein	K	Contig6	Nwi3123	COG0640	52	1e-08
Predicted transcriptional regulator protein	K	Contig6	Nwi3123	COG2345	34	0.004
Predicted transcriptional regulator protein	K	Contig6	Nwi3133	COG0789	90	7e-20
Putative transcriptional regulator protein	K	Contig6	Nwi2752	COG1678	225	2e-60
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig6	Nwi0118	COG3604	36	0.008
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig6	Nwi0595	COG3604	327	1e-90
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig6	Nwi0992	COG3604	316	2e-87
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig6	Nwi1445	COG3604	313	2e-86
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig6	Nwi1447	COG3604	284	1e-77
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig6	Nwi2470	COG3604	43	4e-06
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig6	Nwi3040	COG3604	53	6e-08
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi0118	COG3829	48	2e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi0282	COG3829	46	9e-07
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi0595	COG3829	348	4e-97
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi0992	COG3829	351	6e-98
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi1012	COG3829	42	2e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi1029	COG3829	53	3e-08
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi1444	COG3829	36	0.006
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi1445	COG3829	323	2e-89
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi1447	COG3829	309	4e-85
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi1744	COG3829	55	3e-08
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi2470	COG3829	45	9e-07
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig6	Nwi2710	COG3829	41	3e-04
Transcriptional regulator contains sigma factor-related N-terminal domain	K	Contig6	Nwi2061	COG2390	36	0.002
Transcriptional regulator	K	Contig6	Nwi0029	COG0583	125	4e-30
Transcriptional regulator	K	Contig6	Nwi0252	COG0583	108	3e-25
Transcriptional regulator	K	Contig6	Nwi0488	COG0583	136	2e-33
Transcriptional regulator	K	Contig6	Nwi0615	COG0583	133	2e-32
Transcriptional regulator	K	Contig6	Nwi0980	COG0583	149	2e-37
Transcriptional regulator	K	Contig6	Nwi1510	COG1414	37	0.005
Transcriptional regulator	K	Contig6	Nwi1988	COG0583	149	2e-37
Transcriptional regulator	K	Contig6	Nwi2285	COG1309	48	6e-07
Transcriptional regulator	K	Contig6	Nwi2452	COG1414	33	0.009
Transcriptional regulator	K	Contig6	Nwi2454	COG0583	153	2e-38
Transcriptional regulator	K	Contig6	Nwi2583	COG1309	45	4e-06
Transcriptional regulator	K	Contig6	Nwi2695	COG0583	149	2e-37
Transcriptional regulator	K	Contig6	Nwi2722	COG1309	57	1e-09
Transcriptional regulator	K	Contig6	Nwi2930	COG0583	154	7e-39
Transcriptional regulator	K	Contig6	Nwi3052	COG1309	55	2e-09
Transcriptional regulator of aromatic amino acids metabolism	K	Contig6	Nwi0282	COG3283	33	0.009
Transcriptional regulator of aromatic amino acids metabolism	K	Contig6	Nwi0595	COG3283	246	2e-66
Transcriptional regulator of aromatic amino acids metabolism	K	Contig6	Nwi0992	COG3283	247	1e-66
Transcriptional regulator of aromatic amino acids metabolism	K	Contig6	Nwi1444	COG3283	37	0.002
Transcriptional regulator of aromatic amino acids metabolism	K	Contig6	Nwi1445	COG3283	218	6e-58
Transcriptional regulator of aromatic amino acids metabolism	K	Contig6	Nwi1446	COG3283	38	0.003
Transcriptional regulator of aromatic amino acids metabolism	K	Contig6	Nwi1447	COG3283	215	4e-57
Transcriptional regulator of heat shock gene	K	Contig6	Nwi0194	COG1420	341	3e-95
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi0082	COG1167	117	2e-27
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi0583	COG1167	78	9e-16
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi0881	COG1167	321	7e-89
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi1077	COG1167	36	0.005
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi1240	COG1167	137	2e-33
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi1420	COG1167	37	0.004
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi1648	COG1167	157	1e-39
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi1665	COG1167	41	2e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi1748	COG1167	150	2e-37
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi2405	COG1167	38	0.001
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi2516	COG1167	41	2e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig6	Nwi2980	COG1167	123	2e-29
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi0118	COG1221	45	2e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi0589	COG1221	37	0.006
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi0595	COG1221	281	6e-77
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi0992	COG1221	256	4e-69
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1392	COG1221	49	8e-07
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1445	COG1221	255	4e-69
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1447	COG1221	237	1e-63
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1695	COG1221	42	2e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1898	COG1221	39	6e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi1976	COG1221	37	0.001
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi2470	COG1221	34	0.002
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi2724	COG1221	40	4e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig6	Nwi2927	COG1221	44	1e-05
Transcriptional regulators	K	Contig6	Nwi0362	COG1522	130	4e-32
Transcriptional regulators	K	Contig6	Nwi0565	COG1846	51	4e-08
Transcriptional regulators	K	Contig6	Nwi0881	COG1802	38	0.002
Transcriptional regulators	K	Contig6	Nwi0881	COG2188	65	1e-11
Transcriptional regulators	K	Contig6	Nwi0881	COG2186	56	5e-09
Transcriptional regulators	K	Contig6	Nwi0931	COG1737	80	2e-16
Transcriptional regulators	K	Contig6	Nwi1068	COG1737	56	2e-09
Transcriptional regulators	K	Contig6	Nwi1081	COG1522	54	3e-09
Transcriptional regulators	K	Contig6	Nwi1517	COG1737	61	2e-10
Transcriptional regulators	K	Contig6	Nwi1907	COG1846	45	3e-06
Transcriptional regulators	K	Contig6	Nwi2452	COG1522	137	3e-34
Transcriptional regulators	K	Contig6	Nwi2519	COG1846	60	8e-11
Transcriptional regulators	K	Contig6	Nwi2885	COG1846	69	1e-13
Transcriptional regulators of sugar metabolism	K	Contig6	Nwi1221	COG1349	40	2e-04
Transcriptional regulators of sugar metabolism	K	Contig6	Nwi2452	COG1349	35	0.003
Transcriptional regulators similar to M. xanthus CarD	K	Contig6	Nwi0412	COG1329	190	1e-49
Transcriptional regulator/sugar kinase	K	Contig6	Nwi0438	COG1940	49	6e-07
Transcriptional regulator/sugar kinase	K	Contig6	Nwi1025	COG1940	50	2e-07
Transcriptional regulator/sugar kinase	K	Contig6	Nwi1575	COG1940	71	6e-14

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcription-repair coupling factor (superfamily II helicase)	K	Contig6	Nwi0412	COG1197	38	9e-04
Transcription-repair coupling factor (superfamily II helicase)	K	Contig6	Nwi0427	COG1197	64	3e-11
Transcription-repair coupling factor (superfamily II helicase)	K	Contig6	Nwi1513	COG1197	1318	0.0
Transcription-repair coupling factor (superfamily II helicase)	K	Contig6	Nwi1515	COG1197	323	3e-89
Transcription-repair coupling factor (superfamily II helicase)	K	Contig6	Nwi2495	COG1197	121	3e-28

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