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Intracellular trafficking and secretion

COG Name Group Contig Gene COG ID Score Evalue
Biopolymer transport protein U Contig10 Noc0142 COG0811 180 8e-47
Biopolymer transport protein U Contig10 Noc0143 COG0848 131 2e-32
Biopolymer transport protein U Contig10 Noc0607 COG0811 106 2e-24
Biopolymer transport protein U Contig10 Noc0608 COG0811 68 3e-13
Biopolymer transport protein U Contig10 Noc0609 COG0848 83 6e-18
Biopolymer transport protein U Contig10 Noc0833 COG0811 50 2e-07
Biopolymer transport protein U Contig10 Noc2673 COG0811 150 1e-37
Biopolymer transport protein U Contig10 Noc2674 COG0848 109 7e-26
Competence protein ComGC U Contig10 Noc0756 COG4537 36 0.002
Competence protein ComGC U Contig10 Noc2275 COG4537 40 1e-04
Competence protein ComGC U Contig10 Noc2540 COG4537 38 3e-04
Competence protein ComGC U Contig10 Noc2892 COG4537 34 0.008
Competence protein ComGC U Contig10 Noc2893 COG4537 41 4e-05
Competence protein ComGC U Contig9 NocA0007 COG4537 36 0.002
Flagellar biosynthesis/type III secretory pathway chaperone U Contig10 Noc2685 COG3418 42 2e-05

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name Group Contig Gene COG ID Score Evalue
flagella assembly protein J U Contig10 Noc1530 COG1955 37 0.008
Flagellar biosynthesis chaperone U Contig10 Noc2355 COG2882 56 1e-09
Flagellar biosynthesis pathway component FlhA U Contig10 Noc2158 COG1298 844 0.0
Flagellar biosynthesis pathway component FlhB U Contig10 Noc2159 COG1377 395 1.0e-111
Flagellar biosynthesis pathway component FliP U Contig10 Noc2162 COG1338 273 9e-75
Flagellar biosynthesis pathway component FliQ U Contig10 Noc2161 COG1987 77 3e-16
Flagellar biosynthesis pathway component FliR U Contig10 Noc2160 COG1684 148 3e-37
Flagellar biosynthesis/type III secretory pathway ATPase U Contig10 Noc2082 COG1157 224 9e-60
Flagellar biosynthesis/type III secretory pathway ATPase U Contig10 Noc2083 COG1157 150 2e-37
Flagellar biosynthesis/type III secretory pathway ATPase U Contig10 Noc2214 COG1157 34 0.008
Flagellar biosynthesis/type III secretory pathway ATPase U Contig10 Noc2356 COG1157 586 1.0e-168
Flagellar biosynthesis/type III secretory pathway ATPase U Contig10 Noc2592 COG1157 106 3e-24
Flagellar biosynthesis/type III secretory pathway ATPase U Contig10 Noc3074 COG1157 244 1e-65
Flagellar biosynthesis/type III secretory pathway ATPase U Contig10 Noc3076 COG1157 190 2e-49
Flagellar biosynthesis/type III secretory pathway lipoprotein U Contig10 Noc2359 COG1766 403 1.0e-113
Flagellar biosynthesis/type III secretory pathway protein U Contig10 Noc1504 COG1317 39 5e-04
Flagellar biosynthesis/type III secretory pathway protein U Contig10 Noc2357 COG1317 105 5e-24
Flagellar hook-basal body protein U Contig10 Noc2360 COG1677 67 3e-13
Flagellar motor switch/type III secretory pathway protein U Contig10 Noc2164 COG1886 100 5e-23
Flagellin-specific chaperone FliS U Contig10 Noc2364 COG1516 119 9e-29
Muramidase (flagellum-specific) U Contig10 Noc2370 COG1705 139 2e-34
Predicted ATPase involved in biogenesis of flagella U Contig10 Noc0225 COG2874 44 2e-05
Predicted ATPase involved in biogenesis of flagella U Contig10 Noc0924 COG2874 39 3e-04
Predicted ATPase involved in biogenesis of flagella U Contig10 Noc1328 COG2874 66 4e-12
COG Name Group Contig Gene COG ID Score Evalue
Flp pilus assembly protein ATPase CpaE U Contig10 Noc0507 COG4963 61 8e-11
Flp pilus assembly protein ATPase CpaE U Contig10 Noc0972 COG4963 44 2e-05
Flp pilus assembly protein ATPase CpaE U Contig10 Noc1983 COG4963 37 0.002
Flp pilus assembly protein ATPase CpaE U Contig10 Noc2156 COG4963 52 6e-08
Flp pilus assembly protein ATPase CpaE U Contig10 Noc3083 COG4963 45 5e-06
Flp pilus assembly protein ATPase CpaE U Contig9 NocA0013 COG4963 52 5e-08
Flp pilus assembly protein ATPase CpaF U Contig10 Noc0312 COG4962 75 2e-14
Flp pilus assembly protein ATPase CpaF U Contig10 Noc1361 COG4962 67 2e-12
Flp pilus assembly protein ATPase CpaF U Contig10 Noc2895 COG4962 67 4e-12
Flp pilus assembly protein ATPase CpaF U Contig10 Noc3004 COG4962 74 2e-14
Flp pilus assembly protein protease CpaA U Contig10 Noc0310 COG4960 34 0.008
Flp pilus assembly protein secretin CpaC U Contig10 Noc0251 COG4964 95 2e-20
Flp pilus assembly protein secretin CpaC U Contig10 Noc0761 COG4964 102 1e-22
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc0166 COG5010 40 5e-04
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc0402 COG5010 37 0.005
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc0511 COG5010 61 2e-10
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc0755 COG5010 47 5e-06
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc0901 COG5010 58 5e-10
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc1063 COG5010 57 5e-09
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc1966 COG5010 41 8e-05
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc1987 COG5010 62 2e-10
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc2619 COG5010 44 2e-05
Flp pilus assembly protein TadD contains TPR repeats U Contig10 Noc2765 COG5010 47 4e-06
Hemolysin activation/secretion protein U Contig10 Noc0370 COG2831 49 1e-06
Hemolysin activation/secretion protein U Contig10 Noc0816 COG2831 77 4e-15
Lipoprotein signal peptidase U Contig10 Noc2276 COG0597 138 1e-34
Membrane protein implicated in regulation of membrane protease activity U Contig10 Noc1634 COG1585 55 1e-08
Membrane protein implicated in regulation of membrane protease activity U Contig10 Noc2223 COG1585 37 0.001
Multiple antibiotic transporter U Contig10 Noc1192 COG2095 99 3e-22
Negative regulator of flagellin synthesis (anti-sigma28 factor) U Contig10 Noc2684 COG2747 40 3e-05
Outer membrane protein U Contig10 Noc0150 COG1538 104 2e-23
Outer membrane protein U Contig10 Noc0292 COG1538 105 8e-24
Outer membrane protein U Contig10 Noc1129 COG1538 42 9e-05
Outer membrane protein U Contig10 Noc1275 COG1538 251 7e-68
Outer membrane protein U Contig10 Noc1420 COG1538 138 9e-34
Outer membrane protein U Contig10 Noc1528 COG1538 146 3e-36
Outer membrane protein U Contig10 Noc1537 COG1538 118 7e-28
Outer membrane protein U Contig10 Noc1541 COG1538 116 5e-27
Outer membrane protein U Contig10 Noc2616 COG1538 176 2e-45
Periplasmic component of the Tol biopolymer transport system U Contig10 Noc0145 COG0823 352 2e-98
Periplasmic component of the Tol biopolymer transport system U Contig10 Noc0550 COG0823 37 0.004
Periplasmic component of the Tol biopolymer transport system U Contig10 Noc1156 COG0823 39 0.001
Periplasmic component of the Tol biopolymer transport system U Contig10 Noc1458 COG0823 112 4e-26
Periplasmic component of the Tol biopolymer transport system U Contig10 Noc1974 COG0823 43 8e-05
Periplasmic serine protease (ClpP class) U Contig10 Noc0843 COG0616 186 2e-48
Periplasmic serine protease (ClpP class) U Contig10 Noc1634 COG0616 37 0.003
Periplasmic serine protease (ClpP class) U Contig10 Noc1676 COG0616 39 3e-04
Periplasmic serine protease (ClpP class) U Contig10 Noc2845 COG0616 217 8e-58
P pilus assembly/Cpx signaling pathway periplasmic inhibitor/zinc-resistance associated protein U Contig10 Noc0677 COG3678 57 9e-10
P pilus assembly/Cpx signaling pathway periplasmic inhibitor/zinc-resistance associated protein U Contig10 Noc1059 COG3678 41 3e-05
P pilus assembly protein porin PapC U Contig10 Noc0662 COG3188 34 0.009
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake U Contig10 Noc0555 COG0758 35 0.004
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake U Contig10 Noc3012 COG0758 348 4e-97
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake U Contig9 NocA0005 COG0758 47 2e-06
Preprotein translocase subunit Sec63 U Contig10 Noc1135 COG5407 42 7e-05
Preprotein translocase subunit Sec63 U Contig10 Noc1382 COG5407 54 1e-08
Preprotein translocase subunit Sec63 U Contig10 Noc2148 COG5407 36 0.003
Preprotein translocase subunit Sec63 U Contig10 Noc2810 COG5407 74 2e-14
Preprotein translocase subunit Sec63 U Contig10 Noc2989 COG5407 45 4e-06

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig10 Noc2851 COG0653 1122 0.0
Preprotein translocase subunit SecB U Contig10 Noc0034 COG1952 174 2e-45
Preprotein translocase subunit SecD U Contig10 Noc0201 COG0342 63 8e-11
Preprotein translocase subunit SecD U Contig10 Noc0294 COG0342 51 5e-07
Preprotein translocase subunit SecD U Contig10 Noc1130 COG0342 43 8e-05
Preprotein translocase subunit SecD U Contig10 Noc1277 COG0342 50 9e-07
Preprotein translocase subunit SecD U Contig10 Noc1747 COG0342 39 0.002
Preprotein translocase subunit SecD U Contig10 Noc1827 COG0342 66 1e-11
Preprotein translocase subunit SecD U Contig10 Noc1993 COG0342 44 5e-05
Preprotein translocase subunit SecD U Contig10 Noc2349 COG0342 85 8e-18
Preprotein translocase subunit SecD U Contig10 Noc2350 COG0342 478 1.0e-136
Preprotein translocase subunit SecD U Contig10 Noc2936 COG0342 47 7e-06
Preprotein translocase subunit SecE U Contig10 Noc2337 COG0690 58 2e-10
Preprotein translocase subunit SecF U Contig10 Noc0201 COG0341 41 3e-04
Preprotein translocase subunit SecF U Contig10 Noc1130 COG0341 49 2e-06
Preprotein translocase subunit SecF U Contig10 Noc1277 COG0341 37 0.007
Preprotein translocase subunit SecF U Contig10 Noc1747 COG0341 41 5e-04
Preprotein translocase subunit SecF U Contig10 Noc1827 COG0341 53 1e-07
Preprotein translocase subunit SecF U Contig10 Noc1993 COG0341 42 2e-04
Preprotein translocase subunit SecF U Contig10 Noc2349 COG0341 312 2e-86
Preprotein translocase subunit SecF U Contig10 Noc2350 COG0341 96 6e-21
Preprotein translocase subunit SecF U Contig10 Noc2936 COG0341 37 0.006
Preprotein translocase subunit SecY U Contig10 Noc2305 COG0201 449 1.0e-127
Preprotein translocase subunit YajC U Contig10 Noc1179 COG1862 94 2e-21
Preprotein translocase subunit YajC U Contig10 Noc2351 COG1862 98 2e-22
Preprotein translocase subunit YidC U Contig10 Noc3087 COG0706 268 9e-73
COG Name Group Contig Gene COG ID Score Evalue
Protease subunit of ATP-dependent Clp protease U Contig10 Noc1676 COG0740 311 2e-86
Sec-independent protein secretion pathway components U Contig10 Noc3058 COG1826 62 9e-12
Sec-independent protein secretion pathway components U Contig10 Noc3059 COG1826 69 6e-14
Sec-independent protein secretion pathway component TatC U Contig10 Noc3060 COG0805 220 8e-59
Signal peptidase I U Contig10 Noc2460 COG0681 71 1e-13
Signal recognition particle GTPase U Contig10 Noc0179 COG0552 35 0.005
Signal recognition particle GTPase U Contig10 Noc0179 COG0541 35 0.005
Signal recognition particle GTPase U Contig10 Noc1497 COG0552 42 1e-04
Signal recognition particle GTPase U Contig10 Noc1497 COG0541 40 6e-04
Signal recognition particle GTPase U Contig10 Noc1934 COG0552 402 1.0e-113
Signal recognition particle GTPase U Contig10 Noc1934 COG0541 246 1e-66
Signal recognition particle GTPase U Contig10 Noc2157 COG0552 97 2e-21
Signal recognition particle GTPase U Contig10 Noc2157 COG0541 86 3e-18
Signal recognition particle GTPase U Contig10 Noc2261 COG0552 223 2e-59
Signal recognition particle GTPase U Contig10 Noc2261 COG0541 608 1.0e-175
Signal recognition particle GTPase U Contig10 Noc2675 COG0541 37 0.004
Signal recognition particle GTPase U Contig10 Noc2877 COG0541 34 0.007
Signal recognition particle GTPase U Contig9 NocA0013 COG0552 38 0.001
Tfp pilus assembly protein ATPase PilM U Contig10 Noc0247 COG4972 365 1.0e-102
Tfp pilus assembly protein ATPase PilM U Contig10 Noc0758 COG4972 38 0.002
Tfp pilus assembly protein ATPase PilM U Contig10 Noc2856 COG4972 58 9e-10
Tfp pilus assembly protein ATPase PilU U Contig10 Noc0312 COG5008 114 1e-26
Tfp pilus assembly protein ATPase PilU U Contig10 Noc1361 COG5008 494 1.0e-141
Tfp pilus assembly protein ATPase PilU U Contig10 Noc2895 COG5008 115 1e-26
Tfp pilus assembly protein ATPase PilU U Contig10 Noc3004 COG5008 321 5e-89
Tfp pilus assembly protein FimT U Contig10 Noc2270 COG4970 92 3e-20
Tfp pilus assembly protein FimT U Contig10 Noc2275 COG4970 48 3e-07
Tfp pilus assembly protein FimT U Contig10 Noc2540 COG4970 45 2e-06
Tfp pilus assembly protein FimT U Contig10 Noc2892 COG4970 58 3e-10
Tfp pilus assembly protein FimT U Contig10 Noc2893 COG4970 45 2e-06
Tfp pilus assembly protein FimT U Contig9 NocA0007 COG4970 80 6e-17
Tfp pilus assembly protein FimV U Contig10 Noc1017 COG3170 215 9e-57
Tfp pilus assembly protein major pilin PilA U Contig10 Noc2270 COG4969 40 8e-05
Tfp pilus assembly protein major pilin PilA U Contig10 Noc2275 COG4969 55 2e-09
Tfp pilus assembly protein major pilin PilA U Contig10 Noc2540 COG4969 64 3e-12
Tfp pilus assembly protein major pilin PilA U Contig10 Noc2892 COG4969 36 0.002
Tfp pilus assembly protein major pilin PilA U Contig10 Noc2893 COG4969 45 3e-06
Tfp pilus assembly protein major pilin PilA U Contig9 NocA0007 COG4969 38 3e-04
Tfp pilus assembly protein PilE U Contig10 Noc0756 COG4968 39 4e-04
Tfp pilus assembly protein PilE U Contig10 Noc2270 COG4968 43 2e-05
Tfp pilus assembly protein PilE U Contig10 Noc2275 COG4968 98 2e-22
Tfp pilus assembly protein PilE U Contig10 Noc2540 COG4968 62 1e-11
Tfp pilus assembly protein PilE U Contig10 Noc2892 COG4968 35 0.002
Tfp pilus assembly protein PilE U Contig10 Noc2893 COG4968 47 7e-07
Tfp pilus assembly protein PilE U Contig9 NocA0007 COG4968 45 3e-06
Tfp pilus assembly protein PilF U Contig10 Noc0166 COG3063 56 6e-09
Tfp pilus assembly protein PilF U Contig10 Noc0402 COG3063 37 0.004
Tfp pilus assembly protein PilF U Contig10 Noc0511 COG3063 58 2e-09
Tfp pilus assembly protein PilF U Contig10 Noc0755 COG3063 39 0.001
Tfp pilus assembly protein PilF U Contig10 Noc0901 COG3063 174 5e-45
Tfp pilus assembly protein PilF U Contig10 Noc0940 COG3063 37 0.002
Tfp pilus assembly protein PilF U Contig10 Noc1063 COG3063 55 3e-08
Tfp pilus assembly protein PilF U Contig10 Noc1499 COG3063 40 3e-04
Tfp pilus assembly protein PilF U Contig10 Noc1987 COG3063 57 7e-09
Tfp pilus assembly protein PilF U Contig10 Noc2619 COG3063 45 1e-05
Tfp pilus assembly protein PilF U Contig10 Noc2765 COG3063 57 5e-09
Tfp pilus assembly protein PilN U Contig10 Noc0248 COG3166 115 2e-27
Tfp pilus assembly protein PilN U Contig10 Noc0758 COG3166 42 8e-05
Tfp pilus assembly protein PilO U Contig10 Noc0249 COG3167 206 9e-55
Tfp pilus assembly protein PilP U Contig10 Noc0250 COG3168 144 5e-36
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig10 Noc0312 COG2805 173 4e-44
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig10 Noc1361 COG2805 386 1.0e-108
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig10 Noc2895 COG2805 173 3e-44
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig10 Noc3004 COG2805 529 1.0e-152
Tfp pilus assembly protein PilV U Contig10 Noc2271 COG4967 74 7e-15
Tfp pilus assembly protein PilV U Contig10 Noc2891 COG4967 41 3e-05
Tfp pilus assembly protein PilV U Contig10 Noc2893 COG4967 36 0.001
Tfp pilus assembly protein PilW U Contig10 Noc0756 COG4966 41 9e-05
Tfp pilus assembly protein PilW U Contig10 Noc2272 COG4966 95 6e-21
Tfp pilus assembly protein PilW U Contig10 Noc2891 COG4966 35 0.003
Tfp pilus assembly protein PilX U Contig10 Noc2271 COG4726 33 0.009
Tfp pilus assembly protein PilX U Contig10 Noc2273 COG4726 94 7e-21
Tfp pilus assembly protein PilZ U Contig10 Noc1658 COG3215 155 7e-40
Tfp pilus assembly protein tip-associated adhesin PilY1 U Contig10 Noc2274 COG3419 400 1.0e-112
Type III secretory pathway component EscR U Contig10 Noc2162 COG4790 162 2e-41
Type III secretory pathway component EscS U Contig10 Noc2161 COG4794 49 7e-08
Type III secretory pathway component EscT U Contig10 Noc2160 COG4791 77 1e-15
Type III secretory pathway component EscU U Contig10 Noc2159 COG4792 214 8e-57
Type III secretory pathway component EscV U Contig10 Noc2158 COG4789 518 1.0e-148
Type III secretory pathway lipoprotein EscJ U Contig10 Noc2359 COG4669 73 5e-14
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig10 Noc0312 COG2804 564 1.0e-162
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig10 Noc1361 COG2804 151 7e-38
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig10 Noc2895 COG2804 546 1.0e-156
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig10 Noc3004 COG2804 170 2e-43
Type II secretory pathway component ExeA (predicted ATPase) U Contig10 Noc1621 COG3267 96 6e-21
Type II secretory pathway component ExeA (predicted ATPase) U Contig10 Noc2016 COG3267 143 2e-35
Type II secretory pathway component HofQ U Contig10 Noc0251 COG4796 401 1.0e-113
Type II secretory pathway component HofQ U Contig10 Noc0761 COG4796 126 7e-30
Type II secretory pathway component HofQ U Contig10 Noc2107 COG4796 49 4e-07
Type II secretory pathway component PulD U Contig10 Noc0251 COG1450 170 2e-43
Type II secretory pathway component PulD U Contig10 Noc0761 COG1450 226 4e-60
Type II secretory pathway component PulD U Contig10 Noc2107 COG1450 53 3e-08
Type II secretory pathway component PulF U Contig10 Noc0311 COG1459 373 1.0e-104
Type II secretory pathway component PulF U Contig10 Noc2894 COG1459 317 6e-88
Type II secretory pathway component PulJ U Contig10 Noc0756 COG4795 46 3e-06
Type II secretory pathway component PulJ U Contig10 Noc2270 COG4795 38 3e-04
Type II secretory pathway component PulJ U Contig10 Noc2271 COG4795 35 0.005
Type II secretory pathway component PulJ U Contig10 Noc2275 COG4795 44 5e-06
Type II secretory pathway component PulJ U Contig10 Noc2540 COG4795 35 0.004
Type II secretory pathway component PulJ U Contig9 NocA0007 COG4795 45 3e-06
Type II secretory pathway component PulK U Contig10 Noc0757 COG3156 107 1e-24
Type II secretory pathway component PulL U Contig10 Noc0758 COG3297 36 0.005
Type II secretory pathway prepilin signal peptidase PulO and related peptidase U Contig10 Noc0310 COG1989 154 5e-39
Type II secretory pathway pseudopilin PulG U Contig10 Noc0756 COG2165 40 2e-04
Type II secretory pathway pseudopilin PulG U Contig10 Noc2270 COG2165 45 4e-06
Type II secretory pathway pseudopilin PulG U Contig10 Noc2275 COG2165 60 9e-11
Type II secretory pathway pseudopilin PulG U Contig10 Noc2540 COG2165 50 5e-08
Type II secretory pathway pseudopilin PulG U Contig10 Noc2891 COG2165 42 2e-05
Type II secretory pathway pseudopilin PulG U Contig10 Noc2892 COG2165 46 2e-06
Type II secretory pathway pseudopilin PulG U Contig10 Noc2893 COG2165 84 5e-18
Type II secretory pathway pseudopilin PulG U Contig9 NocA0007 COG2165 42 2e-05
Type IV secretory pathway protease TraF U Contig10 Noc2460 COG4959 45 9e-06
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig10 Noc0312 COG0630 82 1e-16
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig10 Noc1361 COG0630 69 6e-13
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig10 Noc2895 COG0630 77 3e-15
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig10 Noc2975 COG0630 36 0.007
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig10 Noc3004 COG0630 72 7e-14
Type IV secretory pathway VirB4 protein U Contig10 Noc0632 COG3451 42 1e-04
Type IV secretory pathway VirB4 protein U Contig10 Noc0648 COG3451 85 2e-17
Type IV secretory pathway VirB6 protein U Contig10 Noc1336 COG3704 34 0.009
Type IV secretory pathway VirJ protein U Contig10 Noc2200 COG3946 39 5e-04

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