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| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | L | Contig10 | Noc1169 | COG0122 | 55 | 3e-09 |
| 3-methyladenine DNA glycosylase | L | Contig10 | Noc0079 | COG2094 | 178 | 3e-46 |
| 5'-3' exonuclease (including N-terminal domain of PolI) | L | Contig10 | Noc0554 | COG0258 | 286 | 7e-78 |
| Adenine-specific DNA methylase containing a Zn-ribbon | L | Contig10 | Noc0059 | COG1743 | 52 | 2e-07 |
| Adenine-specific DNA methylase containing a Zn-ribbon | L | Contig10 | Noc0546 | COG1743 | 158 | 2e-39 |
| Adenine-specific DNA methylase containing a Zn-ribbon | L | Contig10 | Noc0655 | COG1743 | 506 | 1.0e-144 |
| Adenine-specific DNA methylase containing a Zn-ribbon | L | Contig10 | Noc1367 | COG1743 | 170 | 3e-43 |
| Adenine-specific DNA methylase containing a Zn-ribbon | L | Contig10 | Noc2196 | COG1743 | 166 | 5e-42 |
| Adenine specific DNA methylase Mod | L | Contig10 | Noc1367 | COG2189 | 40 | 6e-04 |
| Adenine specific DNA methylase Mod | L | Contig10 | Noc2928 | COG2189 | 148 | 9e-37 |
| A/G-specific DNA glycosylase | L | Contig10 | Noc0306 | COG1194 | 35 | 0.010 |
| A/G-specific DNA glycosylase | L | Contig10 | Noc1169 | COG1194 | 94 | 7e-21 |
| A/G-specific DNA glycosylase | L | Contig10 | Noc2267 | COG1194 | 351 | 5e-98 |
| ATPase involved in DNA repair | L | Contig10 | Noc0018 | COG0497 | 37 | 0.002 |
| ATPase involved in DNA repair | L | Contig10 | Noc0018 | COG0419 | 47 | 1e-06 |
| ATPase involved in DNA repair | L | Contig10 | Noc0078 | COG0419 | 50 | 2e-06 |
| ATPase involved in DNA repair | L | Contig10 | Noc0115 | COG0497 | 37 | 0.004 |
| ATPase involved in DNA repair | L | Contig10 | Noc0115 | COG0419 | 37 | 0.003 |
| ATPase involved in DNA repair | L | Contig10 | Noc0428 | COG0419 | 47 | 8e-07 |
| ATPase involved in DNA repair | L | Contig10 | Noc0539 | COG0419 | 42 | 4e-05 |
| ATPase involved in DNA repair | L | Contig10 | Noc0602 | COG0419 | 37 | 0.006 |
| ATPase involved in DNA repair | L | Contig10 | Noc0704 | COG0419 | 194 | 3e-50 |
| ATPase involved in DNA repair | L | Contig10 | Noc0839 | COG0419 | 36 | 0.003 |
| ATPase involved in DNA repair | L | Contig10 | Noc0936 | COG0419 | 38 | 0.001 |
| ATPase involved in DNA repair | L | Contig10 | Noc0948 | COG0419 | 42 | 3e-05 |
| ATPase involved in DNA repair | L | Contig10 | Noc1191 | COG0497 | 538 | 1.0e-154 |
| ATPase involved in DNA repair | L | Contig10 | Noc1262 | COG0419 | 36 | 0.010 |
| ATPase involved in DNA repair | L | Contig10 | Noc1273 | COG0419 | 48 | 7e-07 |
| ATPase involved in DNA repair | L | Contig10 | Noc1497 | COG0419 | 47 | 5e-06 |
| ATPase involved in DNA repair | L | Contig10 | Noc1601 | COG0497 | 39 | 0.003 |
| ATPase involved in DNA repair | L | Contig10 | Noc1674 | COG0419 | 38 | 0.004 |
| ATPase involved in DNA repair | L | Contig10 | Noc1687 | COG0419 | 43 | 6e-05 |
| ATPase involved in DNA repair | L | Contig10 | Noc1695 | COG0497 | 44 | 8e-05 |
| ATPase involved in DNA repair | L | Contig10 | Noc1695 | COG0419 | 72 | 2e-13 |
| ATPase involved in DNA repair | L | Contig10 | Noc1779 | COG0419 | 37 | 0.005 |
| ATPase involved in DNA repair | L | Contig10 | Noc1818 | COG0419 | 42 | 2e-04 |
| ATPase involved in DNA repair | L | Contig10 | Noc1836 | COG0419 | 45 | 6e-06 |
| ATPase involved in DNA repair | L | Contig10 | Noc2142 | COG0419 | 36 | 0.004 |
| ATPase involved in DNA repair | L | Contig10 | Noc2151 | COG0497 | 39 | 0.002 |
| ATPase involved in DNA repair | L | Contig10 | Noc2151 | COG0419 | 64 | 6e-11 |
| ATPase involved in DNA repair | L | Contig10 | Noc2178 | COG0419 | 40 | 0.001 |
| ATPase involved in DNA repair | L | Contig10 | Noc2214 | COG0419 | 42 | 3e-05 |
| ATPase involved in DNA repair | L | Contig10 | Noc2422 | COG0419 | 45 | 7e-06 |
| ATPase involved in DNA repair | L | Contig10 | Noc2670 | COG0419 | 40 | 2e-04 |
| ATPase involved in DNA repair | L | Contig10 | Noc2675 | COG0419 | 40 | 4e-04 |
| ATPase involved in DNA repair | L | Contig10 | Noc2729 | COG0419 | 45 | 2e-05 |
| ATPase involved in DNA repair | L | Contig10 | Noc2740 | COG0419 | 38 | 2e-04 |
| ATPase involved in DNA repair | L | Contig10 | Noc2766 | COG0497 | 35 | 0.007 |
| ATPase involved in DNA repair | L | Contig10 | Noc2766 | COG0419 | 41 | 2e-04 |
| ATPase involved in DNA repair | L | Contig10 | Noc2773 | COG0419 | 36 | 0.008 |
| ATPase involved in DNA repair | L | Contig10 | Noc2786 | COG0419 | 46 | 3e-06 |
| ATPase involved in DNA repair | L | Contig10 | Noc2792 | COG0419 | 37 | 9e-04 |
| ATPase involved in DNA repair | L | Contig10 | Noc2832 | COG0419 | 37 | 0.002 |
| ATPase involved in DNA repair | L | Contig10 | Noc2950 | COG0419 | 36 | 0.006 |
| ATPase involved in DNA repair | L | Contig10 | Noc3021 | COG0419 | 53 | 9e-08 |
| ATPase involved in DNA repair | L | Contig10 | Noc3031 | COG0419 | 38 | 1e-04 |
| ATPase involved in DNA repair | L | Contig9 | NocA0020 | COG0497 | 35 | 0.008 |
| ATPase involved in DNA repair | L | Contig9 | NocA0031 | COG0497 | 35 | 0.006 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc0140 | COG2256 | 76 | 5e-15 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc0252 | COG2256 | 35 | 0.004 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc0272 | COG2256 | 55 | 1e-08 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc0331 | COG2256 | 40 | 3e-04 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc0537 | COG2256 | 42 | 6e-05 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc1387 | COG2256 | 44 | 3e-05 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc1674 | COG2256 | 48 | 3e-06 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc1675 | COG2256 | 41 | 2e-04 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc1879 | COG2256 | 38 | 0.002 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc1903 | COG2256 | 51 | 3e-07 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc2003 | COG2256 | 36 | 0.006 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc2341 | COG2256 | 37 | 0.004 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc2381 | COG2256 | 42 | 2e-04 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc2425 | COG2256 | 36 | 0.009 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc2569 | COG2256 | 57 | 4e-09 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc2593 | COG2256 | 108 | 1e-24 |
| ATPase related to the helicase subunit of the Holliday junction resolvase | L | Contig10 | Noc2964 | COG2256 | 37 | 0.002 |
| ATP-dependent DNA ligase homolog of eukaryotic ligase III | L | Contig10 | Noc1413 | COG1423 | 302 | 2e-83 |
| ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member | L | Contig10 | Noc0995 | COG0507 | 409 | 1.0e-115 |
| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) | L | Contig10 | Noc0076 | COG1074 | 50 | 7e-07 |
| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) | L | Contig10 | Noc0599 | COG1074 | 189 | 7e-49 |
| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) | L | Contig10 | Noc0988 | COG1074 | 276 | 8e-75 |
| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) | L | Contig10 | Noc2002 | COG1074 | 169 | 7e-43 |
| ATP-dependent nuclease subunit B | L | Contig10 | Noc0599 | COG3857 | 56 | 8e-09 |
| ATP-dependent nuclease subunit B | L | Contig10 | Noc0987 | COG3857 | 65 | 3e-11 |
| Bacterial nucleoid DNA-binding protein | L | Contig10 | Noc0181 | COG0776 | 122 | 4e-30 |
| Bacterial nucleoid DNA-binding protein | L | Contig10 | Noc1146 | COG0776 | 114 | 2e-27 |
| Bacterial nucleoid DNA-binding protein | L | Contig10 | Noc1772 | COG0776 | 117 | 2e-28 |
| Bacterial nucleoid DNA-binding protein | L | Contig10 | Noc2475 | COG0776 | 71 | 2e-14 |
| Bacterial nucleoid DNA-binding protein | L | Contig10 | Noc2966 | COG0776 | 98 | 1e-22 |
| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| ATPase involved in DNA replication | L | Contig10 | Noc1659 | COG0470 | 40 | 2e-04 |
| ATPase involved in DNA replication | L | Contig10 | Noc2593 | COG0470 | 40 | 6e-04 |
| ATPase involved in DNA replication initiation | L | Contig10 | Noc0001 | COG0593 | 456 | 1.0e-129 |
| ATPase involved in DNA replication initiation | L | Contig10 | Noc0140 | COG0593 | 44 | 1e-05 |
| ATPase involved in DNA replication initiation | L | Contig10 | Noc0272 | COG0593 | 42 | 1e-04 |
| ATPase involved in DNA replication initiation | L | Contig10 | Noc1187 | COG0593 | 172 | 1e-44 |
| ATPase involved in DNA replication initiation | L | Contig10 | Noc1903 | COG0593 | 41 | 3e-04 |
| ATPase involved in DNA replication initiation | L | Contig10 | Noc2569 | COG0593 | 41 | 2e-04 |
| ATP-dependent DNA ligase | L | Contig10 | Noc1413 | COG1793 | 37 | 0.002 |
| DNA polymerase elongation subunit (family B) | L | Contig10 | Noc0800 | COG0417 | 50 | 1e-07 |
| DNA polymerase I - 3'-5' exonuclease and polymerase domains | L | Contig10 | Noc0554 | COG0749 | 786 | 0.0 |
| DNA primase | L | Contig10 | Noc0044 | COG0358 | 438 | 1.0e-124 |
| DNA primase | L | Contig10 | Noc0053 | COG0358 | 48 | 1e-06 |
| DNA replication protein | L | Contig10 | Noc0001 | COG1484 | 57 | 3e-09 |
| DNA replication protein | L | Contig10 | Noc0140 | COG1484 | 38 | 0.001 |
| DNA replication protein | L | Contig10 | Noc1187 | COG1484 | 41 | 8e-05 |
| DNA replication protein | L | Contig10 | Noc1903 | COG1484 | 39 | 0.001 |
| DNA replication protein | L | Contig10 | Noc2425 | COG1484 | 37 | 0.008 |
| DNA replication protein | L | Contig10 | Noc2569 | COG1484 | 36 | 0.007 |
| DNA replication protein | L | Contig10 | Noc2975 | COG1484 | 38 | 0.002 |
| NAD-dependent DNA ligase (contains BRCT domain type II) | L | Contig10 | Noc0995 | COG0272 | 42 | 1e-04 |
| NAD-dependent DNA ligase (contains BRCT domain type II) | L | Contig10 | Noc1693 | COG0272 | 922 | 0.0 |
| Primosomal protein N' (replication factor Y) - superfamily II helicase | L | Contig10 | Noc0028 | COG1198 | 769 | 0.0 |
| Primosomal protein N' (replication factor Y) - superfamily II helicase | L | Contig10 | Noc1139 | COG1198 | 51 | 4e-07 |
| Primosomal protein N' (replication factor Y) - superfamily II helicase | L | Contig10 | Noc1216 | COG1198 | 64 | 3e-11 |
| Primosomal protein N' (replication factor Y) - superfamily II helicase | L | Contig10 | Noc1642 | COG1198 | 80 | 9e-16 |
| Replicative DNA helicase | L | Contig10 | Noc0053 | COG0305 | 60 | 4e-10 |
| Replicative DNA helicase | L | Contig10 | Noc0223 | COG0305 | 550 | 1.0e-158 |
| Replicative DNA helicase | L | Contig10 | Noc0225 | COG0305 | 45 | 1e-05 |
| Replicative DNA helicase | L | Contig10 | Noc1328 | COG0305 | 43 | 4e-05 |
| Ribonuclease HI | L | Contig10 | Noc2815 | COG0328 | 184 | 3e-48 |
| Ribonuclease HII | L | Contig10 | Noc2022 | COG0164 | 220 | 5e-59 |
| Ribonuclease HIII | L | Contig10 | Noc2022 | COG1039 | 56 | 2e-09 |
| Single-stranded DNA-binding protein | L | Contig10 | Noc3023 | COG0629 | 147 | 4e-37 |
| Topoisomerase IA | L | Contig10 | Noc2595 | COG0550 | 40 | 1e-04 |
| Topoisomerase IA | L | Contig10 | Noc3010 | COG0550 | 627 | 0.0 |
| Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit | L | Contig10 | Noc0171 | COG0188 | 1029 | 0.0 |
| Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit | L | Contig10 | Noc2282 | COG0188 | 742 | 0.0 |
| Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit | L | Contig10 | Noc0019 | COG0187 | 897 | 0.0 |
| Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit | L | Contig10 | Noc2283 | COG0187 | 819 | 0.0 |
| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| Cdc6-related protein AAA superfamily ATPase | L | Contig10 | Noc0140 | COG1474 | 36 | 0.005 |
| Cdc6-related protein AAA superfamily ATPase | L | Contig10 | Noc0537 | COG1474 | 35 | 0.009 |
| Cdc6-related protein AAA superfamily ATPase | L | Contig10 | Noc0668 | COG1474 | 43 | 4e-05 |
| Cdc6-related protein AAA superfamily ATPase | L | Contig10 | Noc1621 | COG1474 | 45 | 2e-05 |
| Cdc6-related protein AAA superfamily ATPase | L | Contig10 | Noc1903 | COG1474 | 37 | 0.005 |
| Cdc6-related protein AAA superfamily ATPase | L | Contig10 | Noc2016 | COG1474 | 38 | 0.001 |
| Cdc6-related protein AAA superfamily ATPase | L | Contig10 | Noc2123 | COG1474 | 40 | 3e-04 |
| Cdc6-related protein AAA superfamily ATPase | L | Contig10 | Noc2569 | COG1474 | 43 | 7e-05 |
| Deoxyinosine 3'endonuclease (endonuclease V) | L | Contig10 | Noc0217 | COG1515 | 228 | 3e-61 |
| DNA mismatch repair enzyme (predicted ATPase) | L | Contig10 | Noc0019 | COG0323 | 36 | 0.007 |
| DNA mismatch repair enzyme (predicted ATPase) | L | Contig10 | Noc0336 | COG0323 | 486 | 1.0e-138 |
| DNA mismatch repair enzyme (predicted ATPase) | L | Contig10 | Noc2283 | COG0323 | 41 | 2e-04 |
| DNA mismatch repair protein | L | Contig10 | Noc2831 | COG3066 | 269 | 1e-73 |
| DNA modification methylase | L | Contig10 | Noc0059 | COG0863 | 38 | 0.003 |
| DNA modification methylase | L | Contig10 | Noc0419 | COG0863 | 59 | 3e-10 |
| DNA modification methylase | L | Contig10 | Noc1367 | COG0863 | 38 | 0.002 |
| DNA modification methylase | L | Contig10 | Noc2928 | COG0863 | 41 | 2e-04 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc0028 | COG1061 | 45 | 2e-05 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc0063 | COG1061 | 52 | 3e-07 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc0448 | COG1061 | 79 | 2e-15 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc0545 | COG1061 | 44 | 6e-05 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc0656 | COG1061 | 51 | 3e-07 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc0659 | COG1061 | 67 | 3e-12 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc1139 | COG1061 | 56 | 8e-09 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc1205 | COG1061 | 120 | 4e-28 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc1216 | COG1061 | 63 | 6e-11 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc1466 | COG1061 | 51 | 3e-07 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc1642 | COG1061 | 76 | 1e-14 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc1804 | COG1061 | 43 | 1e-04 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc2582 | COG1061 | 45 | 1e-05 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc2611 | COG1061 | 63 | 4e-11 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc2689 | COG1061 | 43 | 1e-04 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc2909 | COG1061 | 67 | 7e-12 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc2927 | COG1061 | 40 | 9e-04 |
| DNA or RNA helicase of superfamily II | L | Contig10 | Noc3028 | COG1061 | 142 | 1e-34 |
| DNA or RNA helicase of superfamily II | L | Contig9 | NocA0029 | COG1061 | 44 | 5e-05 |
| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| DNA polymerase III alpha subunit | L | Contig10 | Noc0846 | COG0587 | 1285 | 0.0 |
| DNA polymerase III alpha subunit | L | Contig10 | Noc2384 | COG0587 | 60 | 1e-10 |
| DNA polymerase III alpha subunit (gram-positive type) | L | Contig10 | Noc0636 | COG2176 | 68 | 3e-13 |
| DNA polymerase III alpha subunit (gram-positive type) | L | Contig10 | Noc0680 | COG2176 | 38 | 2e-04 |
| DNA polymerase III alpha subunit (gram-positive type) | L | Contig10 | Noc0846 | COG2176 | 146 | 1e-35 |
| DNA polymerase III alpha subunit (gram-positive type) | L | Contig10 | Noc2384 | COG2176 | 44 | 8e-06 |
| DNA polymerase III alpha subunit (gram-positive type) | L | Contig10 | Noc2814 | COG2176 | 114 | 4e-27 |
| DNA polymerase III chi subunit | L | Contig10 | Noc0288 | COG2927 | 116 | 6e-28 |
| DNA polymerase III delta subunit | L | Contig10 | Noc2593 | COG1466 | 40 | 3e-04 |
| DNA polymerase III delta subunit | L | Contig10 | Noc2663 | COG1466 | 219 | 3e-58 |
| DNA polymerase III epsilon subunit and related 3'-5' exonuclease | L | Contig10 | Noc0636 | COG0847 | 77 | 1e-15 |
| DNA polymerase III epsilon subunit and related 3'-5' exonuclease | L | Contig10 | Noc0680 | COG0847 | 48 | 1e-07 |
| DNA polymerase III epsilon subunit and related 3'-5' exonuclease | L | Contig10 | Noc2814 | COG0847 | 175 | 2e-45 |
| DNA polymerase III gamma/tau subunits | L | Contig10 | Noc0140 | COG2812 | 43 | 4e-05 |
| DNA polymerase III gamma/tau subunits | L | Contig10 | Noc1659 | COG2812 | 107 | 8e-25 |
| DNA polymerase III gamma/tau subunits | L | Contig10 | Noc2593 | COG2812 | 437 | 1.0e-124 |
| DNA polymerase III gamma/tau subunits | L | Contig10 | Noc2663 | COG2812 | 42 | 5e-05 |
| DNA polymerase sliding clamp subunit (PCNA homolog) | L | Contig10 | Noc0002 | COG0592 | 295 | 4e-81 |
| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| DNA repair exonuclease | L | Contig10 | Noc0192 | COG0420 | 47 | 1e-06 |
| DNA repair exonuclease | L | Contig10 | Noc0403 | COG0420 | 47 | 2e-06 |
| DNA repair exonuclease | L | Contig10 | Noc0703 | COG0420 | 160 | 2e-40 |
| DNA repair exonuclease | L | Contig10 | Noc1034 | COG0420 | 36 | 5e-04 |
| DNA repair exonuclease | L | Contig10 | Noc1260 | COG0420 | 54 | 9e-09 |
| DNA repair exonuclease | L | Contig10 | Noc2252 | COG0420 | 39 | 5e-04 |
| DNA repair photolyase | L | Contig10 | Noc1738 | COG1533 | 42 | 1e-04 |
| DNA repair protein | L | Contig10 | Noc0236 | COG2003 | 283 | 8e-78 |
| DNA repair protein | L | Contig10 | Noc0625 | COG2003 | 150 | 5e-38 |
| DNA topoisomerase VI subunit B | L | Contig10 | Noc0019 | COG1389 | 36 | 0.009 |
| DNA topoisomerase VI subunit B | L | Contig10 | Noc1400 | COG1389 | 48 | 3e-06 |
| DNA topoisomerase VI subunit B | L | Contig10 | Noc3018 | COG1389 | 38 | 0.002 |
| DNA uptake protein and related DNA-binding protein | L | Contig10 | Noc1303 | COG1555 | 45 | 2e-05 |
| ERCC4-like helicase | L | Contig10 | Noc0063 | COG1111 | 71 | 5e-13 |
| ERCC4-like helicase | L | Contig10 | Noc0545 | COG1111 | 48 | 2e-06 |
| ERCC4-like helicase | L | Contig10 | Noc0656 | COG1111 | 49 | 1e-06 |
| ERCC4-like helicase | L | Contig10 | Noc1139 | COG1111 | 60 | 7e-10 |
| ERCC4-like helicase | L | Contig10 | Noc1205 | COG1111 | 47 | 5e-06 |
| ERCC4-like helicase | L | Contig10 | Noc1216 | COG1111 | 45 | 2e-05 |
| ERCC4-like helicase | L | Contig10 | Noc1642 | COG1111 | 44 | 7e-05 |
| ERCC4-like helicase | L | Contig10 | Noc2582 | COG1111 | 51 | 1e-07 |
| ERCC4-like helicase | L | Contig10 | Noc2611 | COG1111 | 56 | 9e-09 |
| ERCC4-like helicase | L | Contig10 | Noc3028 | COG1111 | 61 | 4e-10 |
| ERCC4-type nuclease | L | Contig10 | Noc1644 | COG1948 | 48 | 1e-06 |
| ERCC4-type nuclease | L | Contig10 | Noc1693 | COG1948 | 40 | 6e-04 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0078 | COG0178 | 1109 | 0.0 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0115 | COG0178 | 54 | 2e-08 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0279 | COG0178 | 51 | 1e-07 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0428 | COG0178 | 42 | 3e-05 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0539 | COG0178 | 53 | 2e-08 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0581 | COG0178 | 46 | 3e-06 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0839 | COG0178 | 56 | 4e-09 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0936 | COG0178 | 48 | 2e-06 |
| Excinuclease ATPase subunit | L | Contig10 | Noc0948 | COG0178 | 39 | 2e-04 |
| Excinuclease ATPase subunit | L | Contig10 | Noc1262 | COG0178 | 42 | 9e-05 |
| Excinuclease ATPase subunit | L | Contig10 | Noc1273 | COG0178 | 59 | 3e-10 |
| Excinuclease ATPase subunit | L | Contig10 | Noc1687 | COG0178 | 44 | 2e-05 |
| Excinuclease ATPase subunit | L | Contig10 | Noc1779 | COG0178 | 41 | 2e-04 |
| Excinuclease ATPase subunit | L | Contig10 | Noc1818 | COG0178 | 53 | 6e-08 |
| Excinuclease ATPase subunit | L | Contig10 | Noc1836 | COG0178 | 41 | 6e-05 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2142 | COG0178 | 41 | 2e-04 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2214 | COG0178 | 49 | 3e-07 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2396 | COG0178 | 43 | 3e-05 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2422 | COG0178 | 40 | 2e-04 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2644 | COG0178 | 35 | 0.007 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2670 | COG0178 | 40 | 1e-04 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2675 | COG0178 | 61 | 3e-10 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2729 | COG0178 | 37 | 0.004 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2773 | COG0178 | 42 | 7e-05 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2786 | COG0178 | 55 | 6e-09 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2792 | COG0178 | 51 | 7e-08 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2832 | COG0178 | 40 | 2e-04 |
| Excinuclease ATPase subunit | L | Contig10 | Noc2950 | COG0178 | 51 | 2e-07 |
| Excinuclease ATPase subunit | L | Contig10 | Noc3021 | COG0178 | 1511 | 0.0 |
| Exonuclease I | L | Contig10 | Noc0341 | COG2925 | 35 | 0.003 |
| Exonuclease III | L | Contig10 | Noc0209 | COG0708 | 277 | 4e-76 |
| Exonuclease III | L | Contig9 | NocA0008 | COG0708 | 43 | 4e-05 |
| Exonuclease VII large subunit | L | Contig10 | Noc0144 | COG1570 | 35 | 0.008 |
| Exonuclease VII large subunit | L | Contig10 | Noc0612 | COG1570 | 464 | 1.0e-132 |
| Exonuclease VII small subunit | L | Contig10 | Noc2036 | COG1722 | 54 | 2e-09 |
| Factor for inversion stimulation Fis transcriptional activator | L | Contig10 | Noc0537 | COG2901 | 39 | 5e-04 |
| Factor for inversion stimulation Fis transcriptional activator | L | Contig10 | Noc1049 | COG2901 | 92 | 8e-21 |
| Factor for inversion stimulation Fis transcriptional activator | L | Contig10 | Noc1623 | COG2901 | 48 | 2e-06 |
| Factor for inversion stimulation Fis transcriptional activator | L | Contig10 | Noc1881 | COG2901 | 37 | 0.003 |
| Formamidopyrimidine-DNA glycosylase | L | Contig10 | Noc2648 | COG0266 | 319 | 1e-88 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc0028 | COG0556 | 40 | 7e-04 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc1139 | COG0556 | 1055 | 0.0 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc1216 | COG0556 | 37 | 0.004 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc1466 | COG0556 | 38 | 0.002 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc1642 | COG0556 | 73 | 2e-13 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc1644 | COG0556 | 39 | 0.001 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc2582 | COG0556 | 39 | 8e-04 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc2611 | COG0556 | 39 | 6e-04 |
| Helicase subunit of the DNA excision repair complex | L | Contig10 | Noc3028 | COG0556 | 37 | 0.005 |
| Helicase subunit of the DNA excision repair complex | L | Contig9 | NocA0029 | COG0556 | 41 | 4e-04 |
| Holliday junction resolvasome DNA-binding subunit | L | Contig10 | Noc0139 | COG0632 | 204 | 3e-54 |
| Holliday junction resolvasome endonuclease subunit | L | Contig10 | Noc0138 | COG0817 | 183 | 5e-48 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc0140 | COG2255 | 522 | 1.0e-149 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc0272 | COG2255 | 46 | 8e-06 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc1387 | COG2255 | 47 | 4e-06 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc1674 | COG2255 | 39 | 0.001 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc1675 | COG2255 | 42 | 9e-05 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc1879 | COG2255 | 37 | 0.006 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc1903 | COG2255 | 42 | 2e-04 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc2425 | COG2255 | 41 | 3e-04 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc2569 | COG2255 | 46 | 8e-06 |
| Holliday junction resolvasome helicase subunit | L | Contig10 | Noc2593 | COG2255 | 50 | 5e-07 |
| HrpA-like helicase | L | Contig10 | Noc1301 | COG1643 | 744 | 0.0 |
| HrpA-like helicase | L | Contig10 | Noc2611 | COG1643 | 48 | 1e-06 |
| Inactivated superfamily I helicase | L | Contig10 | Noc0987 | COG3893 | 48 | 3e-06 |
| Integrase | L | Contig10 | Noc0046 | COG0582 | 48 | 7e-07 |
| Integrase | L | Contig10 | Noc0318 | COG0582 | 56 | 4e-09 |
| Integrase | L | Contig10 | Noc0615 | COG0582 | 53 | 4e-08 |
| Integrase | L | Contig10 | Noc0687 | COG0582 | 57 | 2e-09 |
| Integrase | L | Contig10 | Noc2255 | COG0582 | 50 | 3e-07 |
| Integrase | L | Contig9 | NocA0015 | COG0582 | 58 | 1e-09 |
| Intein/homing endonuclease | L | Contig10 | Noc2527 | COG1372 | 57 | 1e-08 |
| Methylated DNA-protein cysteine methyltransferase | L | Contig10 | Noc2104 | COG0350 | 157 | 6e-40 |
| Methylated DNA-protein cysteine methyltransferase | L | Contig10 | Noc2256 | COG0350 | 126 | 9e-31 |
| Mg-dependent DNase | L | Contig10 | Noc0664 | COG0084 | 139 | 2e-34 |
| Mg-dependent DNase | L | Contig10 | Noc1657 | COG0084 | 289 | 2e-79 |
| Micrococcal nuclease (thermonuclease) homologs | L | Contig10 | Noc1218 | COG1525 | 84 | 1e-17 |
| Micrococcal nuclease (thermonuclease) homologs | L | Contig10 | Noc1464 | COG1525 | 88 | 2e-19 |
| Micrococcal nuclease (thermonuclease) homologs | L | Contig10 | Noc1653 | COG1525 | 40 | 1e-04 |
| Mismatch repair ATPase (MutS family) | L | Contig10 | Noc0919 | COG1193 | 114 | 3e-26 |
| Mismatch repair ATPase (MutS family) | L | Contig10 | Noc0919 | COG0249 | 965 | 0.0 |
| Mismatch repair ATPase (MutS family) | L | Contig10 | Noc1585 | COG1193 | 88 | 1e-18 |
| Mismatch repair ATPase (MutS family) | L | Contig10 | Noc1585 | COG0249 | 139 | 7e-34 |
| Mismatch repair ATPase (MutS family) | L | Contig10 | Noc1906 | COG1193 | 41 | 5e-05 |
| Mismatch repair ATPase (MutS family) | L | Contig10 | Noc2029 | COG1193 | 37 | 0.002 |
| N6-adenine-specific methylase | L | Contig10 | Noc0393 | COG0742 | 41 | 8e-05 |
| N6-adenine-specific methylase | L | Contig10 | Noc1050 | COG0742 | 46 | 3e-06 |
| N6-adenine-specific methylase | L | Contig10 | Noc1931 | COG0742 | 185 | 2e-48 |
| N6-adenine-specific methylase | L | Contig10 | Noc2232 | COG0742 | 41 | 6e-05 |
| N6-adenine-specific methylase | L | Contig10 | Noc2343 | COG0742 | 36 | 0.003 |
| N6-adenine-specific methylase | L | Contig10 | Noc2934 | COG0742 | 40 | 2e-04 |
| NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding | L | Contig10 | Noc0193 | COG2816 | 40 | 1e-04 |
| NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding | L | Contig10 | Noc0306 | COG2816 | 37 | 0.002 |
| NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding | L | Contig10 | Noc2018 | COG2816 | 35 | 0.004 |
| NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding | L | Contig10 | Noc2420 | COG2816 | 37 | 0.001 |
| NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding | L | Contig10 | Noc2512 | COG2816 | 45 | 3e-06 |
| NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding | L | Contig10 | Noc2643 | COG2816 | 46 | 1e-06 |
| NTP pyrophosphohydrolase including oxidative damage repair protein | L | Contig10 | Noc0193 | COG0494 | 41 | 3e-05 |
| NTP pyrophosphohydrolase including oxidative damage repair protein | L | Contig10 | Noc0306 | COG0494 | 59 | 3e-10 |
| NTP pyrophosphohydrolase including oxidative damage repair protein | L | Contig10 | Noc1415 | COG0494 | 54 | 4e-09 |
| NTP pyrophosphohydrolase including oxidative damage repair protein | L | Contig10 | Noc2018 | COG0494 | 51 | 5e-08 |
| NTP pyrophosphohydrolase including oxidative damage repair protein | L | Contig10 | Noc2420 | COG0494 | 38 | 4e-04 |
| NTP pyrophosphohydrolase including oxidative damage repair protein | L | Contig10 | Noc2512 | COG0494 | 50 | 7e-08 |
| NTP pyrophosphohydrolase including oxidative damage repair protein | L | Contig10 | Noc2643 | COG0494 | 55 | 2e-09 |
| Nuclease subunit of the excinuclease complex | L | Contig10 | Noc1139 | COG0322 | 44 | 4e-05 |
| Nuclease subunit of the excinuclease complex | L | Contig10 | Noc1644 | COG0322 | 612 | 1.0e-176 |
| Phage terminase small subunit | L | Contig10 | Noc0054 | COG3728 | 38 | 5e-04 |
| Predicted 3'-5' exonuclease related to the exonuclease domain of PolB | L | Contig10 | Noc0800 | COG3298 | 75 | 5e-15 |
| Predicted ATPase involved in replication control Cdc46/Mcm family | L | Contig10 | Noc0301 | COG1241 | 33 | 0.005 |
| Predicted ATPase involved in replication control Cdc46/Mcm family | L | Contig10 | Noc0785 | COG1241 | 44 | 2e-05 |
| Predicted ATPase involved in replication control Cdc46/Mcm family | L | Contig10 | Noc1848 | COG1241 | 35 | 0.005 |
| Predicted ATPase involved in replication control Cdc46/Mcm family | L | Contig10 | Noc2003 | COG1241 | 49 | 8e-07 |
| Predicted ATPase involved in replication control Cdc46/Mcm family | L | Contig10 | Noc2361 | COG1241 | 43 | 4e-05 |
| Predicted ATP-dependent endonuclease of the OLD family | L | Contig10 | Noc0018 | COG3593 | 53 | 3e-08 |
| Predicted ATP-dependent endonuclease of the OLD family | L | Contig10 | Noc1695 | COG3593 | 45 | 2e-05 |
| Predicted ATP-dependent endonuclease of the OLD family | L | Contig10 | Noc2422 | COG3593 | 37 | 0.001 |
| Predicted ATP-dependent endonuclease of the OLD family | L | Contig10 | Noc2740 | COG3593 | 38 | 4e-04 |
| Predicted ATP-dependent endonuclease of the OLD family | L | Contig10 | Noc3031 | COG3593 | 32 | 0.007 |
| Predicted DNA modification methylase | L | Contig10 | Noc0393 | COG1041 | 36 | 0.003 |
| Predicted DNA modification methylase | L | Contig10 | Noc0546 | COG1041 | 37 | 0.006 |
| Predicted DNA modification methylase | L | Contig10 | Noc0801 | COG1041 | 48 | 2e-06 |
| Predicted DNA modification methylase | L | Contig10 | Noc0914 | COG1041 | 38 | 7e-04 |
| Predicted DNA modification methylase | L | Contig10 | Noc0994 | COG1041 | 47 | 1e-06 |
| Predicted DNA modification methylase | L | Contig10 | Noc1931 | COG1041 | 36 | 0.001 |
| Predicted DNA modification methylase | L | Contig10 | Noc2098 | COG1041 | 39 | 6e-04 |
| Predicted DNA modification methylase | L | Contig10 | Noc2196 | COG1041 | 42 | 2e-04 |
| Predicted DNA modification methylase | L | Contig10 | Noc2232 | COG1041 | 37 | 0.001 |
| Predicted DNA modification methylase | L | Contig10 | Noc2343 | COG1041 | 40 | 1e-04 |
| Predicted DNA modification methylase | L | Contig10 | Noc2926 | COG1041 | 51 | 5e-08 |
| Predicted DNA modification methylase | L | Contig10 | Noc2934 | COG1041 | 43 | 2e-05 |
| Predicted EndoIII-related endonuclease | L | Contig10 | Noc1169 | COG0177 | 308 | 3e-85 |
| Predicted EndoIII-related endonuclease | L | Contig10 | Noc2267 | COG0177 | 101 | 6e-23 |
| Predicted endonuclease distantly related to Holliday junction resolvase | L | Contig10 | Noc0355 | COG0792 | 125 | 1e-30 |
| Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) | L | Contig10 | Noc0367 | COG0816 | 146 | 7e-37 |
| Predicted methylated DNA-protein cysteine methyltransferase | L | Contig10 | Noc2104 | COG3695 | 69 | 3e-13 |
| Predicted methylated DNA-protein cysteine methyltransferase | L | Contig10 | Noc2256 | COG3695 | 54 | 6e-09 |
| Predicted N6-adenine-specific DNA methylase | L | Contig10 | Noc0315 | COG0116 | 35 | 0.004 |
| Predicted N6-adenine-specific DNA methylase | L | Contig10 | Noc0914 | COG0116 | 36 | 0.004 |
| Predicted N6-adenine-specific DNA methylase | L | Contig10 | Noc2934 | COG0116 | 38 | 0.001 |
| Predicted NTP pyrophosphohydrolase | L | Contig10 | Noc0193 | COG4119 | 37 | 6e-04 |
| Predicted NTP pyrophosphohydrolase | L | Contig10 | Noc1415 | COG4119 | 41 | 4e-05 |
| Predicted NTP pyrophosphohydrolase | L | Contig10 | Noc2018 | COG4119 | 36 | 0.002 |
| Predicted NTP pyrophosphohydrolase | L | Contig10 | Noc2512 | COG4119 | 37 | 0.001 |
| Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake | L | Contig10 | Noc0555 | COG0758 | 35 | 0.004 |
| Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake | L | Contig10 | Noc3012 | COG0758 | 348 | 4e-97 |
| Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake | L | Contig9 | NocA0005 | COG0758 | 47 | 2e-06 |
| Rad3-related DNA helicase | L | Contig10 | Noc1364 | COG1199 | 452 | 1.0e-128 |
| Rad3-related DNA helicase | L | Contig10 | Noc3028 | COG1199 | 37 | 0.006 |
| RecA-family ATPase | L | Contig10 | Noc0225 | COG3598 | 59 | 6e-10 |
| RecA-family ATPase | L | Contig10 | Noc1328 | COG3598 | 37 | 0.004 |
| RecA/RadA recombinase | L | Contig10 | Noc0225 | COG0468 | 62 | 6e-11 |
| RecA/RadA recombinase | L | Contig10 | Noc0924 | COG0468 | 316 | 1e-87 |
| RecA/RadA recombinase | L | Contig10 | Noc1328 | COG0468 | 69 | 8e-13 |
| RecB family exonuclease | L | Contig10 | Noc0987 | COG2887 | 45 | 2e-05 |
| RecG-like helicase | L | Contig10 | Noc0028 | COG1200 | 64 | 3e-11 |
| RecG-like helicase | L | Contig10 | Noc0656 | COG1200 | 40 | 7e-04 |
| RecG-like helicase | L | Contig10 | Noc1139 | COG1200 | 43 | 6e-05 |
| RecG-like helicase | L | Contig10 | Noc1216 | COG1200 | 853 | 0.0 |
| RecG-like helicase | L | Contig10 | Noc1642 | COG1200 | 356 | 4e-99 |
| RecG-like helicase | L | Contig10 | Noc2611 | COG1200 | 38 | 0.002 |
| RecJ-like exonuclease contains DnaJ-type Zn finger domain | L | Contig10 | Noc0180 | COG1107 | 37 | 0.003 |
| RecJ-like exonuclease contains DnaJ-type Zn finger domain | L | Contig10 | Noc2116 | COG1107 | 45 | 2e-05 |
| RecJ-like exonuclease contains DnaJ-type Zn finger domain | L | Contig10 | Noc2810 | COG1107 | 40 | 2e-04 |
| RecJ-like exonuclease contains DnaJ-type Zn finger domain | L | Contig10 | Noc2897 | COG1107 | 37 | 0.006 |
| Recombinational DNA repair ATPase (RecF pathway) | L | Contig10 | Noc0018 | COG1195 | 273 | 2e-74 |
| Recombinational DNA repair ATPase (RecF pathway) | L | Contig10 | Noc1191 | COG1195 | 46 | 7e-06 |
| Recombinational DNA repair ATPase (RecF pathway) | L | Contig10 | Noc1695 | COG1195 | 39 | 0.002 |
| Recombinational DNA repair ATPase (RecF pathway) | L | Contig10 | Noc2740 | COG1195 | 34 | 0.003 |
| Recombinational DNA repair ATPase (RecF pathway) | L | Contig10 | Noc3031 | COG1195 | 44 | 2e-06 |
| Recombinational DNA repair protein (RecF pathway) | L | Contig10 | Noc0794 | COG1381 | 142 | 2e-35 |
| Recombinational DNA repair protein (RecF pathway) | L | Contig10 | Noc2595 | COG0353 | 273 | 7e-75 |
| Reverse gyrase | L | Contig10 | Noc1139 | COG1110 | 38 | 0.002 |
| Reverse gyrase | L | Contig10 | Noc1216 | COG1110 | 43 | 8e-05 |
| Reverse gyrase | L | Contig10 | Noc1642 | COG1110 | 48 | 3e-06 |
| Reverse gyrase | L | Contig10 | Noc2582 | COG1110 | 45 | 8e-06 |
| Reverse gyrase | L | Contig10 | Noc2611 | COG1110 | 59 | 6e-10 |
| Reverse gyrase | L | Contig10 | Noc3010 | COG1110 | 278 | 1e-75 |
| Single-stranded DNA-specific exonuclease | L | Contig10 | Noc1189 | COG0608 | 361 | 1.0e-101 |
| Site-specific DNA methylase | L | Contig10 | Noc0344 | COG0338 | 230 | 7e-62 |
| Site-specific recombinase DNA invertase Pin homologs | L | Contig10 | Noc0696 | COG1961 | 127 | 7e-31 |
| Site-specific recombinase DNA invertase Pin homologs | L | Contig9 | NocA0021 | COG1961 | 136 | 8e-34 |
| Site-specific recombinase XerC | L | Contig10 | Noc0046 | COG4973 | 63 | 2e-11 |
| Site-specific recombinase XerC | L | Contig10 | Noc0318 | COG4973 | 348 | 4e-97 |
| Site-specific recombinase XerC | L | Contig10 | Noc0615 | COG4973 | 46 | 3e-06 |
| Site-specific recombinase XerC | L | Contig10 | Noc0687 | COG4973 | 156 | 2e-39 |
| Site-specific recombinase XerC | L | Contig10 | Noc1698 | COG4973 | 38 | 7e-04 |
| Site-specific recombinase XerC | L | Contig10 | Noc2240 | COG4973 | 36 | 0.004 |
| Site-specific recombinase XerC | L | Contig10 | Noc2255 | COG4973 | 214 | 1e-56 |
| Site-specific recombinase XerC | L | Contig9 | NocA0015 | COG4973 | 155 | 3e-39 |
| Site-specific recombinase XerD | L | Contig10 | Noc0046 | COG4974 | 99 | 3e-22 |
| Site-specific recombinase XerD | L | Contig10 | Noc0318 | COG4974 | 290 | 8e-80 |
| Site-specific recombinase XerD | L | Contig10 | Noc0615 | COG4974 | 56 | 3e-09 |
| Site-specific recombinase XerD | L | Contig10 | Noc0687 | COG4974 | 198 | 5e-52 |
| Site-specific recombinase XerD | L | Contig10 | Noc1565 | COG4974 | 45 | 1e-06 |
| Site-specific recombinase XerD | L | Contig10 | Noc1698 | COG4974 | 49 | 6e-07 |
| Site-specific recombinase XerD | L | Contig10 | Noc2240 | COG4974 | 57 | 3e-09 |
| Site-specific recombinase XerD | L | Contig10 | Noc2255 | COG4974 | 372 | 1.0e-104 |
| Site-specific recombinase XerD | L | Contig9 | NocA0015 | COG4974 | 200 | 9e-53 |
| Superfamily I DNA and RNA helicase and helicase subunits | L | Contig10 | Noc0920 | COG1112 | 102 | 2e-22 |
| Superfamily I DNA and RNA helicase and helicase subunits | L | Contig10 | Noc0995 | COG1112 | 38 | 0.002 |
| Superfamily I DNA and RNA helicase | L | Contig10 | Noc0076 | COG0210 | 66 | 1e-11 |
| Superfamily I DNA and RNA helicase | L | Contig10 | Noc0599 | COG0210 | 606 | 1.0e-174 |
| Superfamily I DNA and RNA helicase | L | Contig10 | Noc0988 | COG0210 | 129 | 1e-30 |
| Superfamily I DNA and RNA helicase | L | Contig10 | Noc2002 | COG0210 | 579 | 1.0e-166 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc0028 | COG0513 | 36 | 0.008 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc0063 | COG0513 | 73 | 1e-13 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc0545 | COG0513 | 51 | 5e-07 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc0656 | COG0513 | 73 | 1e-13 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc1139 | COG0513 | 75 | 1e-14 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc1216 | COG0513 | 73 | 6e-14 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc1301 | COG0513 | 45 | 4e-05 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc1364 | COG0513 | 41 | 3e-04 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc1642 | COG0513 | 70 | 8e-13 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc2582 | COG0513 | 381 | 1.0e-107 |
| Superfamily II DNA and RNA helicase | L | Contig10 | Noc2611 | COG0513 | 405 | 1.0e-114 |
| Superfamily II DNA helicase | L | Contig10 | Noc0063 | COG0514 | 41 | 3e-04 |
| Superfamily II DNA helicase | L | Contig10 | Noc0656 | COG0514 | 53 | 7e-08 |
| Superfamily II DNA helicase | L | Contig10 | Noc1139 | COG0514 | 58 | 2e-09 |
| Superfamily II DNA helicase | L | Contig10 | Noc1216 | COG0514 | 59 | 1e-09 |
| Superfamily II DNA helicase | L | Contig10 | Noc1364 | COG0514 | 40 | 4e-04 |
| Superfamily II DNA helicase | L | Contig10 | Noc1642 | COG0514 | 62 | 2e-10 |
| Superfamily II DNA helicase | L | Contig10 | Noc2582 | COG0514 | 80 | 3e-16 |
| Superfamily II DNA helicase | L | Contig10 | Noc2611 | COG0514 | 99 | 5e-22 |
| Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) | L | Contig10 | Noc0028 | COG4098 | 55 | 2e-08 |
| Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) | L | Contig10 | Noc1139 | COG4098 | 55 | 2e-08 |
| Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) | L | Contig10 | Noc1216 | COG4098 | 55 | 2e-08 |
| Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) | L | Contig10 | Noc1301 | COG4098 | 40 | 0.001 |
| Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) | L | Contig10 | Noc1642 | COG4098 | 82 | 2e-16 |
| Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) | L | Contig10 | Noc2706 | COG4098 | 43 | 1e-04 |
| Superfamily II DNA/RNA helicase SNF2 family | L | Contig10 | Noc0063 | COG0553 | 111 | 2e-25 |
| Superfamily II DNA/RNA helicase SNF2 family | L | Contig10 | Noc0545 | COG0553 | 59 | 2e-09 |
| Superfamily II DNA/RNA helicase SNF2 family | L | Contig10 | Noc0656 | COG0553 | 61 | 3e-10 |
| Superfamily II DNA/RNA helicase SNF2 family | L | Contig10 | Noc0659 | COG0553 | 58 | 1e-09 |
| Superfamily II helicase and inactivated derivatives | L | Contig10 | Noc2244 | COG5519 | 183 | 4e-47 |
| Superfamily II RNA helicase | L | Contig10 | Noc1642 | COG4581 | 48 | 5e-06 |
| Superfamily II RNA helicase | L | Contig10 | Noc2611 | COG4581 | 41 | 2e-04 |
| Transcription-repair coupling factor (superfamily II helicase) | L | Contig10 | Noc0028 | COG1197 | 63 | 9e-11 |
| Transcription-repair coupling factor (superfamily II helicase) | L | Contig10 | Noc1139 | COG1197 | 146 | 5e-36 |
| Transcription-repair coupling factor (superfamily II helicase) | L | Contig10 | Noc1216 | COG1197 | 356 | 3e-99 |
| Transcription-repair coupling factor (superfamily II helicase) | L | Contig10 | Noc1642 | COG1197 | 1402 | 0.0 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0048 | COG3415 | 49 | 7e-08 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0049 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0070 | COG3415 | 49 | 6e-08 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0071 | COG3335 | 44 | 5e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0073 | COG3415 | 33 | 0.009 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0074 | COG3335 | 54 | 6e-09 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0324 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0325 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0385 | COG3335 | 44 | 5e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0386 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0387 | COG1943 | 119 | 5e-29 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0388 | COG0675 | 155 | 5e-39 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0401 | COG0675 | 150 | 2e-37 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0442 | COG0675 | 160 | 2e-40 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0499 | COG0675 | 169 | 3e-43 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0519 | COG1943 | 95 | 2e-21 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0638 | COG2801 | 54 | 1e-08 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0657 | COG3415 | 48 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0658 | COG3335 | 44 | 5e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0701 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0702 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0768 | COG1943 | 106 | 1e-24 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0860 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0861 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0876 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0877 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0957 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc0958 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1093 | COG0675 | 156 | 2e-39 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1184 | COG0675 | 116 | 2e-27 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1199 | COG0675 | 111 | 9e-26 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1289 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1290 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1309 | COG0675 | 166 | 3e-42 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1331 | COG3415 | 44 | 2e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1366 | COG0675 | 125 | 7e-30 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1398 | COG3415 | 37 | 3e-04 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1500 | COG1943 | 126 | 7e-31 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1501 | COG0675 | 155 | 6e-39 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1505 | COG0675 | 168 | 6e-43 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1520 | COG0675 | 172 | 5e-44 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1587 | COG0675 | 105 | 7e-24 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1594 | COG0675 | 158 | 7e-40 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1598 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1599 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1615 | COG3415 | 41 | 1e-05 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1793 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1794 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1882 | COG3335 | 47 | 6e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1946 | COG1943 | 87 | 3e-19 |
| Transposase and inactivated derivatives | L | Contig10 | Noc1991 | COG0675 | 144 | 1e-35 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2051 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2052 | COG3335 | 45 | 3e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2198 | COG0675 | 101 | 1e-22 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2211 | COG0675 | 114 | 1e-26 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2218 | COG0675 | 162 | 3e-41 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2543 | COG0675 | 164 | 1e-41 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2686 | COG0675 | 116 | 3e-27 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2768 | COG0675 | 159 | 3e-40 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2873 | COG3335 | 44 | 5e-06 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2874 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc2902 | COG0675 | 112 | 3e-26 |
| Transposase and inactivated derivatives | L | Contig10 | Noc3024 | COG3415 | 49 | 1e-07 |
| Transposase and inactivated derivatives | L | Contig10 | Noc3025 | COG3335 | 45 | 3e-06 |
| Uncharacterized protein predicted to be involved in DNA repair | L | Contig10 | Noc2751 | COG1518 | 145 | 5e-36 |
| Uncharacterized protein related to Endonuclease III | L | Contig10 | Noc1169 | COG2231 | 85 | 3e-18 |
| Uncharacterized protein related to Endonuclease III | L | Contig10 | Noc2267 | COG2231 | 43 | 3e-05 |
| Uracil-DNA glycosylase | L | Contig10 | Noc1085 | COG1573 | 136 | 8e-34 |
| Uracil-DNA glycosylase | L | Contig10 | Noc2515 | COG1573 | 169 | 2e-43 |
| Zn-finger domain associated with topoisomerase type I | L | Contig10 | Noc0649 | COG0551 | 39 | 4e-04 |
| Zn-finger domain associated with topoisomerase type I | L | Contig9 | NocA0010 | COG0551 | 36 | 0.003 |
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