Transcription

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component	K	Contig10	Noc0291	COG4219	36	0.004
Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component	K	Contig10	Noc0342	COG4219	38	0.001
AraC-type DNA-binding domain-containing protein	K	Contig10	Noc0437	COG2207	33	0.006

BASAL TRANSCRIPTION FACTORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig10	Noc0283	COG1813	33	0.003
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig10	Noc2930	COG1813	33	0.007
Transcription antiterminator	K	Contig10	Noc2336	COG0250	193	6e-51
Transcription antiterminator	K	Contig10	Noc2484	COG0250	81	5e-17
Transcription elongation factor	K	Contig10	Noc1918	COG0782	71	3e-14
Transcription elongation factor	K	Contig10	Noc2121	COG0195	178	7e-46
Transcription elongation factor	K	Contig10	Noc2571	COG0782	149	1e-37
Transcription termination factor	K	Contig10	Noc0803	COG0781	126	7e-31
Transcription termination factor	K	Contig10	Noc2083	COG1158	43	5e-05
Transcription termination factor	K	Contig10	Noc2356	COG1158	86	4e-18
Transcription termination factor	K	Contig10	Noc2592	COG1158	710	0.0
Transcription termination factor	K	Contig10	Noc3074	COG1158	58	1e-09

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Cold shock protein	K	Contig10	Noc2438	COG1278	40	1e-04
Cold shock protein	K	Contig10	Noc2609	COG1278	89	5e-20
DNA-binding HTH domain-containing protein	K	Contig10	Noc0276	COG2771	60	2e-10
DNA-binding HTH domain-containing protein	K	Contig10	Noc1632	COG2771	51	7e-08
DNA-binding HTH domain-containing protein	K	Contig10	Noc1701	COG2771	54	8e-09
DNA-binding HTH domain-containing protein	K	Contig10	Noc1717	COG2771	53	2e-08
DNA-binding HTH domain-containing protein	K	Contig10	Noc2445	COG2771	53	2e-08
DNA-binding winged-HTH domains	K	Contig10	Noc0676	COG3710	62	3e-11
DNA-binding winged-HTH domains	K	Contig10	Noc1354	COG3710	65	4e-12
DNA-binding winged-HTH domains	K	Contig10	Noc2401	COG3710	77	2e-15

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit	K	Contig10	Noc2300	COG0202	339	2e-94
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	Contig10	Noc2331	COG0085	772	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	Contig10	Noc2330	COG0086	889	0.0
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig10	Noc0045	COG0568	333	3e-92
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig10	Noc0183	COG0568	258	4e-70
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig10	Noc1702	COG0568	235	3e-63
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig10	Noc1935	COG0568	225	2e-60
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig10	Noc2066	COG0568	289	4e-79
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig10	Noc2155	COG0568	72	3e-14
DNA-directed RNA polymerase specialized sigma subunit	K	Contig10	Noc0045	COG1191	109	7e-25
DNA-directed RNA polymerase specialized sigma subunit	K	Contig10	Noc0183	COG1191	114	1e-26
DNA-directed RNA polymerase specialized sigma subunit	K	Contig10	Noc1474	COG1191	35	0.004
DNA-directed RNA polymerase specialized sigma subunit	K	Contig10	Noc1702	COG1191	125	4e-30
DNA-directed RNA polymerase specialized sigma subunit	K	Contig10	Noc1935	COG1191	100	3e-22
DNA-directed RNA polymerase specialized sigma subunit	K	Contig10	Noc2066	COG1191	117	3e-27
DNA-directed RNA polymerase specialized sigma subunit	K	Contig10	Noc2155	COG1191	197	7e-52
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig10	Noc0183	COG1595	39	5e-04
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig10	Noc0276	COG1595	37	0.002
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig10	Noc1474	COG1595	92	2e-20
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig10	Noc1702	COG1595	35	0.006
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig10	Noc2155	COG1595	41	6e-05
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig10	Noc2466	COG1595	125	3e-30
DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog	K	Contig10	Noc2793	COG1508	483	1.0e-137
DNA-directed RNA polymerase subunit E'	K	Contig10	Noc0180	COG1095	39	9e-04
DNA-directed RNA polymerase subunit E'	K	Contig10	Noc1303	COG1095	39	9e-04
DNA-directed RNA polymerase subunit E'	K	Contig10	Noc2116	COG1095	49	8e-07
DNA-directed RNA polymerase subunit E'	K	Contig10	Noc2897	COG1095	59	2e-09
DNA-directed RNA polymerase subunit K/omega	K	Contig10	Noc1213	COG1758	69	6e-14
DNA-directed RNA polymerase subunit RPC10 (contains C4-type Zn-finger)	K	Contig10	Noc0301	COG1996	33	0.005

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA helicase TIP49 TBP-interacting protein	K	Contig10	Noc0140	COG1224	35	0.008
DNA helicase TIP49 TBP-interacting protein	K	Contig10	Noc0272	COG1224	47	3e-06
DNA helicase TIP49 TBP-interacting protein	K	Contig10	Noc1675	COG1224	36	0.005
DNA helicase TIP49 TBP-interacting protein	K	Contig10	Noc1903	COG1224	50	5e-07
DNA helicase TIP49 TBP-interacting protein	K	Contig10	Noc2569	COG1224	52	1e-07
DNA helicase TIP49 TBP-interacting protein	K	Contig10	Noc2593	COG1224	43	7e-05
DNA or RNA helicase of superfamily II	K	Contig10	Noc0028	COG1061	45	2e-05
DNA or RNA helicase of superfamily II	K	Contig10	Noc0063	COG1061	52	3e-07
DNA or RNA helicase of superfamily II	K	Contig10	Noc0448	COG1061	79	2e-15
DNA or RNA helicase of superfamily II	K	Contig10	Noc0545	COG1061	44	6e-05
DNA or RNA helicase of superfamily II	K	Contig10	Noc0656	COG1061	51	3e-07
DNA or RNA helicase of superfamily II	K	Contig10	Noc0659	COG1061	67	3e-12
DNA or RNA helicase of superfamily II	K	Contig10	Noc1139	COG1061	56	8e-09
DNA or RNA helicase of superfamily II	K	Contig10	Noc1205	COG1061	120	4e-28
DNA or RNA helicase of superfamily II	K	Contig10	Noc1216	COG1061	63	6e-11
DNA or RNA helicase of superfamily II	K	Contig10	Noc1466	COG1061	51	3e-07
DNA or RNA helicase of superfamily II	K	Contig10	Noc1642	COG1061	76	1e-14
DNA or RNA helicase of superfamily II	K	Contig10	Noc1804	COG1061	43	1e-04
DNA or RNA helicase of superfamily II	K	Contig10	Noc2582	COG1061	45	1e-05
DNA or RNA helicase of superfamily II	K	Contig10	Noc2611	COG1061	63	4e-11
DNA or RNA helicase of superfamily II	K	Contig10	Noc2689	COG1061	43	1e-04
DNA or RNA helicase of superfamily II	K	Contig10	Noc2909	COG1061	67	7e-12
DNA or RNA helicase of superfamily II	K	Contig10	Noc2927	COG1061	40	9e-04
DNA or RNA helicase of superfamily II	K	Contig10	Noc3028	COG1061	142	1e-34
DNA or RNA helicase of superfamily II	K	Contig9	NocA0029	COG1061	44	5e-05
dsRNA-specific ribonuclease	K	Contig10	Noc2458	COG0571	245	1e-66
Exoribonuclease II	K	Contig10	Noc2897	COG4776	229	5e-61
Exoribonuclease R	K	Contig10	Noc0180	COG0557	37	0.003
Exoribonuclease R	K	Contig10	Noc1303	COG0557	43	9e-05
Exoribonuclease R	K	Contig10	Noc2116	COG0557	38	0.002
Exoribonuclease R	K	Contig10	Noc2897	COG0557	724	0.0
Factor for inversion stimulation Fis transcriptional activator	K	Contig10	Noc0537	COG2901	39	5e-04
Factor for inversion stimulation Fis transcriptional activator	K	Contig10	Noc1049	COG2901	92	8e-21
Factor for inversion stimulation Fis transcriptional activator	K	Contig10	Noc1623	COG2901	48	2e-06
Factor for inversion stimulation Fis transcriptional activator	K	Contig10	Noc1881	COG2901	37	0.003
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig10	Noc1214	COG0317	824	0.0
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig10	Noc1300	COG0317	713	0.0
Histone acetyltransferase	K	Contig10	Noc2444	COG1243	57	3e-09
Negative regulator of flagellin synthesis (anti-sigma28 factor)	K	Contig10	Noc2684	COG2747	40	3e-05
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig10	Noc1893	COG0378	42	3e-04
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig10	Noc2261	COG0378	36	0.005
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig10	Noc2877	COG0378	249	9e-68
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig10	Noc3035	COG0378	40	2e-04
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	K	Contig10	Noc0602	COG1842	45	1e-05
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	K	Contig10	Noc1695	COG1842	38	0.006
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	K	Contig10	Noc2178	COG1842	46	1e-05
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig10	Noc0602	COG1293	42	1e-04
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig10	Noc0704	COG1293	37	0.009
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig10	Noc2466	COG4941	53	1e-08
Predicted transcriptional regulator BolA superfamily protein	K	Contig10	Noc2387	COG5007	58	1e-10
Predicted transcriptional regulator BolA superfamily protein	K	Contig10	Noc2781	COG5007	65	1e-12
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc0102	COG4109	34	0.010
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc0240	COG4109	43	4e-05
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc0613	COG4109	48	2e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc0824	COG4109	33	0.007
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc1011	COG4109	47	2e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc1785	COG4109	55	2e-08
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc1840	COG4109	46	8e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc2011	COG4109	40	2e-04
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc2788	COG4109	49	6e-07
Predicted transcriptional regulator protein containing CBS domains	K	Contig10	Noc2801	COG4109	40	3e-04
Predicted transcriptional regulator protein	K	Contig10	Noc0445	COG3905	68	2e-13
Predicted transcriptional regulator protein	K	Contig10	Noc1027	COG4189	36	0.001
Predicted transcriptional regulator protein	K	Contig9	NocA0025	COG5340	52	4e-08
Predicted transcriptional regulator/sugar kinase	K	Contig10	Noc0256	COG1548	207	8e-55
Predicted transcription regulator containing HTH domain	K	Contig10	Noc0415	COG5499	32	0.008
Predicted transcription regulator containing HTH domain	K	Contig10	Noc0571	COG5499	38	2e-04
Predicted transcription regulator containing HTH domain	K	Contig10	Noc1291	COG5499	32	0.008
Predicted transcription regulator containing HTH domain	K	Contig10	Noc2944	COG5499	77	4e-16
Rad3-related DNA helicase	K	Contig10	Noc1364	COG1199	452	1.0e-128
Rad3-related DNA helicase	K	Contig10	Noc3028	COG1199	37	0.006
RecG-like helicase	K	Contig10	Noc0028	COG1200	64	3e-11
RecG-like helicase	K	Contig10	Noc0656	COG1200	40	7e-04
RecG-like helicase	K	Contig10	Noc1139	COG1200	43	6e-05
RecG-like helicase	K	Contig10	Noc1216	COG1200	853	0.0
RecG-like helicase	K	Contig10	Noc1642	COG1200	356	4e-99
RecG-like helicase	K	Contig10	Noc2611	COG1200	38	0.002
Regulators of stationary/sporulation gene expression	K	Contig10	Noc2044	COG2002	38	1e-04
Regulators of stationary/sporulation gene expression	K	Contig10	Noc2206	COG2002	40	5e-05
Regulators of stationary/sporulation gene expression	K	Contig10	Noc2538	COG2002	46	5e-07
Regulators of stationary/sporulation gene expression	K	Contig10	Noc2545	COG2002	41	2e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0126	COG4567	47	1e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0130	COG4567	50	6e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0131	COG4567	40	6e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0276	COG4567	45	3e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0319	COG4567	46	1e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0392	COG4567	50	2e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0537	COG4567	41	1e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0676	COG4567	72	4e-14
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0723	COG4567	73	4e-14
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0785	COG4567	76	4e-15
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc0847	COG4567	43	3e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1271	COG4567	47	9e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1354	COG4567	54	1e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1400	COG4567	46	2e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1494	COG4567	51	8e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1601	COG4567	46	2e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1623	COG4567	71	1e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1632	COG4567	39	3e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1700	COG4567	63	4e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1701	COG4567	58	4e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1717	COG4567	68	6e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1757	COG4567	43	7e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1758	COG4567	40	0.001
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc1997	COG4567	63	5e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc2361	COG4567	37	0.002
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc2401	COG4567	50	1e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc2445	COG4567	57	8e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc2451	COG4567	35	0.002
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc2452	COG4567	72	9e-14
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig10	Noc3019	COG4567	63	3e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0126	COG3437	76	2e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0130	COG3437	84	3e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0131	COG3437	87	5e-19
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0276	COG3437	43	2e-05
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0319	COG3437	70	5e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0350	COG3437	156	2e-39
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0392	COG3437	82	7e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0676	COG3437	85	6e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0723	COG3437	76	4e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0785	COG3437	83	5e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc0847	COG3437	85	6e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1271	COG3437	89	2e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1329	COG3437	35	0.002
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1330	COG3437	44	4e-05
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1354	COG3437	67	1e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1400	COG3437	78	3e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1494	COG3437	85	3e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1601	COG3437	66	1e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1623	COG3437	55	1e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1632	COG3437	44	9e-06
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1700	COG3437	52	1e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1701	COG3437	72	3e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1704	COG3437	60	5e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1717	COG3437	81	8e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1757	COG3437	62	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1758	COG3437	59	1e-09
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc1997	COG3437	45	1e-05
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc2361	COG3437	61	2e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc2401	COG3437	104	5e-24
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc2445	COG3437	66	1e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc2451	COG3437	61	4e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc2452	COG3437	55	1e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig10	Noc3019	COG3437	90	2e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0126	COG2197	68	5e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0130	COG2197	80	6e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0131	COG2197	70	5e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0276	COG2197	95	3e-21
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0319	COG2197	45	3e-05
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0376	COG2197	36	0.007
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0392	COG2197	73	3e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0676	COG2197	87	1e-18
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0723	COG2197	72	1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0785	COG2197	72	7e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc0847	COG2197	75	5e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1271	COG2197	85	5e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1329	COG2197	37	4e-04
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1354	COG2197	84	8e-18
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1400	COG2197	55	3e-08
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1494	COG2197	76	2e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1601	COG2197	68	3e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1623	COG2197	63	6e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1632	COG2197	100	1e-22
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1700	COG2197	67	3e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1701	COG2197	122	2e-29
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1704	COG2197	58	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1717	COG2197	119	2e-28
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1757	COG2197	64	4e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1758	COG2197	49	1e-06
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc1997	COG2197	63	3e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc2361	COG2197	57	4e-09
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc2401	COG2197	92	2e-20
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc2445	COG2197	114	5e-27
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc2451	COG2197	60	6e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc2452	COG2197	71	2e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig10	Noc3019	COG2197	75	1e-14
Response regulator of citrate/malate metabolism	K	Contig10	Noc0126	COG4565	58	8e-09
Response regulator of citrate/malate metabolism	K	Contig10	Noc0130	COG4565	61	3e-11
Response regulator of citrate/malate metabolism	K	Contig10	Noc0131	COG4565	44	4e-06
Response regulator of citrate/malate metabolism	K	Contig10	Noc0276	COG4565	43	1e-05
Response regulator of citrate/malate metabolism	K	Contig10	Noc0319	COG4565	44	3e-05
Response regulator of citrate/malate metabolism	K	Contig10	Noc0392	COG4565	49	4e-07
Response regulator of citrate/malate metabolism	K	Contig10	Noc0676	COG4565	64	6e-12
Response regulator of citrate/malate metabolism	K	Contig10	Noc0723	COG4565	68	1e-12
Response regulator of citrate/malate metabolism	K	Contig10	Noc0785	COG4565	48	1e-06
Response regulator of citrate/malate metabolism	K	Contig10	Noc0847	COG4565	70	3e-13
Response regulator of citrate/malate metabolism	K	Contig10	Noc1271	COG4565	62	3e-10
Response regulator of citrate/malate metabolism	K	Contig10	Noc1354	COG4565	68	7e-13
Response regulator of citrate/malate metabolism	K	Contig10	Noc1400	COG4565	39	0.001
Response regulator of citrate/malate metabolism	K	Contig10	Noc1494	COG4565	64	5e-12
Response regulator of citrate/malate metabolism	K	Contig10	Noc1601	COG4565	51	4e-07
Response regulator of citrate/malate metabolism	K	Contig10	Noc1623	COG4565	66	8e-12
Response regulator of citrate/malate metabolism	K	Contig10	Noc1632	COG4565	40	2e-04
Response regulator of citrate/malate metabolism	K	Contig10	Noc1700	COG4565	53	7e-08
Response regulator of citrate/malate metabolism	K	Contig10	Noc1701	COG4565	55	3e-09
Response regulator of citrate/malate metabolism	K	Contig10	Noc1704	COG4565	39	1e-04
Response regulator of citrate/malate metabolism	K	Contig10	Noc1717	COG4565	72	3e-14
Response regulator of citrate/malate metabolism	K	Contig10	Noc1757	COG4565	59	1e-10
Response regulator of citrate/malate metabolism	K	Contig10	Noc1758	COG4565	38	0.002
Response regulator of citrate/malate metabolism	K	Contig10	Noc1997	COG4565	49	9e-07
Response regulator of citrate/malate metabolism	K	Contig10	Noc2361	COG4565	61	2e-10
Response regulator of citrate/malate metabolism	K	Contig10	Noc2401	COG4565	62	3e-11
Response regulator of citrate/malate metabolism	K	Contig10	Noc2445	COG4565	61	6e-11
Response regulator of citrate/malate metabolism	K	Contig10	Noc2451	COG4565	54	5e-09
Response regulator of citrate/malate metabolism	K	Contig10	Noc2452	COG4565	76	9e-15
Response regulator of citrate/malate metabolism	K	Contig10	Noc3019	COG4565	76	4e-15
Response regulator of the LytR/AlgR family	K	Contig10	Noc0126	COG3279	60	2e-09
Response regulator of the LytR/AlgR family	K	Contig10	Noc0130	COG3279	45	2e-06
Response regulator of the LytR/AlgR family	K	Contig10	Noc0131	COG3279	51	2e-08
Response regulator of the LytR/AlgR family	K	Contig10	Noc0319	COG3279	39	0.001
Response regulator of the LytR/AlgR family	K	Contig10	Noc0392	COG3279	63	3e-11
Response regulator of the LytR/AlgR family	K	Contig10	Noc0676	COG3279	60	1e-10
Response regulator of the LytR/AlgR family	K	Contig10	Noc0723	COG3279	62	1e-10
Response regulator of the LytR/AlgR family	K	Contig10	Noc0785	COG3279	57	3e-09
Response regulator of the LytR/AlgR family	K	Contig10	Noc0847	COG3279	62	4e-11
Response regulator of the LytR/AlgR family	K	Contig10	Noc1271	COG3279	56	2e-08
Response regulator of the LytR/AlgR family	K	Contig10	Noc1354	COG3279	43	2e-05
Response regulator of the LytR/AlgR family	K	Contig10	Noc1400	COG3279	41	4e-04
Response regulator of the LytR/AlgR family	K	Contig10	Noc1494	COG3279	44	9e-06
Response regulator of the LytR/AlgR family	K	Contig10	Noc1601	COG3279	53	1e-07
Response regulator of the LytR/AlgR family	K	Contig10	Noc1700	COG3279	48	1e-06
Response regulator of the LytR/AlgR family	K	Contig10	Noc1701	COG3279	53	2e-08
Response regulator of the LytR/AlgR family	K	Contig10	Noc1704	COG3279	46	9e-07
Response regulator of the LytR/AlgR family	K	Contig10	Noc1717	COG3279	53	1e-08
Response regulator of the LytR/AlgR family	K	Contig10	Noc1757	COG3279	35	0.003
Response regulator of the LytR/AlgR family	K	Contig10	Noc1997	COG3279	46	6e-06
Response regulator of the LytR/AlgR family	K	Contig10	Noc2361	COG3279	52	7e-08
Response regulator of the LytR/AlgR family	K	Contig10	Noc2401	COG3279	57	9e-10
Response regulator of the LytR/AlgR family	K	Contig10	Noc2445	COG3279	55	5e-09
Response regulator of the LytR/AlgR family	K	Contig10	Noc2451	COG3279	43	1e-05
Response regulator of the LytR/AlgR family	K	Contig10	Noc2452	COG3279	44	2e-05
Response regulator of the LytR/AlgR family	K	Contig10	Noc3019	COG3279	59	7e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0126	COG0745	85	5e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0130	COG0745	98	1e-22
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0131	COG0745	103	3e-24
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0276	COG0745	60	1e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0319	COG0745	81	3e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0376	COG0745	40	6e-04
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0392	COG0745	84	2e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0676	COG0745	211	3e-56
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0723	COG0745	83	3e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0785	COG0745	90	4e-19
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc0847	COG0745	103	3e-23
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1271	COG0745	96	2e-20
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1329	COG0745	43	9e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1354	COG0745	203	9e-54
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1400	COG0745	75	2e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1494	COG0745	85	3e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1601	COG0745	83	1e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1623	COG0745	67	3e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1632	COG0745	62	5e-11
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1700	COG0745	66	7e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1701	COG0745	80	1e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1704	COG0745	73	1e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1717	COG0745	78	5e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1757	COG0745	79	1e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1758	COG0745	58	2e-09
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc1997	COG0745	57	3e-09
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc2361	COG0745	78	9e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc2401	COG0745	244	3e-66
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc2445	COG0745	85	3e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc2451	COG0745	67	8e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc2452	COG0745	75	1e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig10	Noc3019	COG0745	105	8e-24
Serine phosphatase RsbU regulator of sigma subunit	K	Contig10	Noc0206	COG2208	168	9e-43
Serine phosphatase RsbU regulator of sigma subunit	K	Contig10	Noc0207	COG2208	186	6e-48
Serine phosphatase RsbU regulator of sigma subunit	K	Contig10	Noc0964	COG2208	113	1e-26
Serine phosphatase RsbU regulator of sigma subunit	K	Contig10	Noc2979	COG2208	184	2e-47
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0273	COG4650	123	2e-29
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0537	COG4650	137	1e-33
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0723	COG4650	156	2e-39
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0785	COG4650	157	1e-39
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1623	COG4650	152	6e-38
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1848	COG4650	39	4e-04
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1881	COG4650	129	4e-31
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1911	COG4650	151	9e-38
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1997	COG4650	142	5e-35
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc2361	COG4650	164	1e-41
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc2362	COG4650	155	6e-39
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc3019	COG4650	88	1e-18
Small nuclear ribonucleoprotein (snRNP) homolog	K	Contig10	Noc2590	COG1958	32	0.008
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig10	Noc0617	COG1974	88	5e-19
Superfamily II DNA and RNA helicase	K	Contig10	Noc0028	COG0513	36	0.008
Superfamily II DNA and RNA helicase	K	Contig10	Noc0063	COG0513	73	1e-13
Superfamily II DNA and RNA helicase	K	Contig10	Noc0545	COG0513	51	5e-07
Superfamily II DNA and RNA helicase	K	Contig10	Noc0656	COG0513	73	1e-13
Superfamily II DNA and RNA helicase	K	Contig10	Noc1139	COG0513	75	1e-14
Superfamily II DNA and RNA helicase	K	Contig10	Noc1216	COG0513	73	6e-14
Superfamily II DNA and RNA helicase	K	Contig10	Noc1301	COG0513	45	4e-05
Superfamily II DNA and RNA helicase	K	Contig10	Noc1364	COG0513	41	3e-04
Superfamily II DNA and RNA helicase	K	Contig10	Noc1642	COG0513	70	8e-13
Superfamily II DNA and RNA helicase	K	Contig10	Noc2582	COG0513	381	1.0e-107
Superfamily II DNA and RNA helicase	K	Contig10	Noc2611	COG0513	405	1.0e-114
Superfamily II DNA/RNA helicase SNF2 family	K	Contig10	Noc0063	COG0553	111	2e-25
Superfamily II DNA/RNA helicase SNF2 family	K	Contig10	Noc0545	COG0553	59	2e-09
Superfamily II DNA/RNA helicase SNF2 family	K	Contig10	Noc0656	COG0553	61	3e-10
Superfamily II DNA/RNA helicase SNF2 family	K	Contig10	Noc0659	COG0553	58	1e-09
Transcriptional accessory protein	K	Contig10	Noc0180	COG2183	75	1e-14
Transcriptional accessory protein	K	Contig10	Noc1303	COG2183	952	0.0
Transcriptional accessory protein	K	Contig10	Noc2116	COG2183	72	1e-13
Transcriptional accessory protein	K	Contig10	Noc2897	COG2183	46	8e-06
Transcriptional activator	K	Contig10	Noc1473	COG3806	48	5e-07
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc0273	COG3284	218	4e-58
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc0537	COG3284	240	7e-65
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc0723	COG3284	264	1e-71
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc0785	COG3284	261	9e-71
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc1049	COG3284	45	1e-06
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc1623	COG3284	234	1e-62
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc1703	COG3284	35	0.009
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc1848	COG3284	40	2e-04
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc1881	COG3284	229	4e-61
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc1903	COG3284	36	0.008
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc1911	COG3284	276	2e-75
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc1997	COG3284	271	8e-74
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc2361	COG3284	264	7e-72
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc2362	COG3284	277	1e-75
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc2381	COG3284	37	0.007
Transcriptional activator of acetoin/glycerol metabolism	K	Contig10	Noc3019	COG3284	170	1e-43
Transcriptional antiterminator	K	Contig10	Noc2798	COG3933	45	2e-06
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	K	Contig10	Noc0029	COG4977	75	4e-15

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATP-dependent transcriptional regulator protein	K	Contig10	Noc0276	COG2909	45	3e-06
ATP-dependent transcriptional regulator protein	K	Contig10	Noc0511	COG2909	38	0.002
ATP-dependent transcriptional regulator protein	K	Contig10	Noc0901	COG2909	43	2e-05
ATP-dependent transcriptional regulator protein	K	Contig10	Noc1474	COG2909	34	0.008
ATP-dependent transcriptional regulator protein	K	Contig10	Noc1632	COG2909	43	2e-05
ATP-dependent transcriptional regulator protein	K	Contig10	Noc1701	COG2909	58	4e-10
ATP-dependent transcriptional regulator protein	K	Contig10	Noc1717	COG2909	41	6e-05
ATP-dependent transcriptional regulator protein	K	Contig10	Noc2445	COG2909	42	3e-05
Predicted transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains	K	Contig10	Noc2026	COG1327	198	2e-52
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	K	Contig10	Noc1157	COG0864	33	0.006
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	K	Contig10	Noc1567	COG0864	37	2e-04
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain	K	Contig10	Noc2541	COG3609	34	0.003
Predicted transcriptional regulator protein containing the HTH domain	K	Contig10	Noc1040	COG1386	171	3e-44
Predicted transcriptional regulator protein	K	Contig10	Noc0057	COG2865	192	4e-50
Predicted transcriptional regulator protein	K	Contig10	Noc0102	COG2524	41	5e-05
Predicted transcriptional regulator protein	K	Contig10	Noc0118	COG2524	44	1e-05
Predicted transcriptional regulator protein	K	Contig10	Noc0167	COG1476	32	0.006
Predicted transcriptional regulator protein	K	Contig10	Noc0203	COG0789	95	2e-21
Predicted transcriptional regulator protein	K	Contig10	Noc0283	COG2944	63	4e-12
Predicted transcriptional regulator protein	K	Contig10	Noc0283	COG1709	33	0.005
Predicted transcriptional regulator protein	K	Contig10	Noc0283	COG1395	35	0.001
Predicted transcriptional regulator protein	K	Contig10	Noc0283	COG1476	39	6e-05
Predicted transcriptional regulator protein	K	Contig10	Noc0290	COG3682	68	2e-13
Predicted transcriptional regulator protein	K	Contig10	Noc0415	COG1395	43	4e-06
Predicted transcriptional regulator protein	K	Contig10	Noc0449	COG3636	116	3e-28
Predicted transcriptional regulator protein	K	Contig10	Noc0569	COG3636	103	3e-24
Predicted transcriptional regulator protein	K	Contig10	Noc0571	COG1396	33	0.003
Predicted transcriptional regulator protein	K	Contig10	Noc0571	COG1395	41	1e-05
Predicted transcriptional regulator protein	K	Contig10	Noc0571	COG1476	40	4e-05
Predicted transcriptional regulator protein	K	Contig10	Noc0613	COG3620	47	2e-06
Predicted transcriptional regulator protein	K	Contig10	Noc0613	COG2524	67	3e-12
Predicted transcriptional regulator protein	K	Contig10	Noc0616	COG3311	45	2e-06
Predicted transcriptional regulator protein	K	Contig10	Noc0617	COG2932	70	1e-13
Predicted transcriptional regulator protein	K	Contig10	Noc0660	COG2378	72	4e-14
Predicted transcriptional regulator protein	K	Contig10	Noc0665	COG3311	37	2e-04
Predicted transcriptional regulator protein	K	Contig10	Noc0674	COG3636	32	0.008
Predicted transcriptional regulator protein	K	Contig10	Noc0686	COG1475	38	1e-04
Predicted transcriptional regulator protein	K	Contig10	Noc0697	COG1395	37	3e-04
Predicted transcriptional regulator protein	K	Contig10	Noc0891	COG1725	66	4e-12
Predicted transcriptional regulator protein	K	Contig10	Noc1011	COG3620	37	0.002
Predicted transcriptional regulator protein	K	Contig10	Noc1011	COG2524	53	3e-08
Predicted transcriptional regulator protein	K	Contig10	Noc1027	COG2345	33	0.009
Predicted transcriptional regulator protein	K	Contig10	Noc1147	COG0789	58	1e-10
Predicted transcriptional regulator protein	K	Contig10	Noc1291	COG1396	33	0.005
Predicted transcriptional regulator protein	K	Contig10	Noc1291	COG1395	50	3e-08
Predicted transcriptional regulator protein	K	Contig10	Noc1291	COG1476	34	0.003
Predicted transcriptional regulator protein	K	Contig10	Noc1636	COG1959	49	7e-07
Predicted transcriptional regulator protein	K	Contig10	Noc1648	COG1959	147	3e-37
Predicted transcriptional regulator protein	K	Contig10	Noc1652	COG1396	35	9e-04
Predicted transcriptional regulator protein	K	Contig10	Noc1652	COG1476	35	0.001
Predicted transcriptional regulator protein	K	Contig10	Noc1652	COG3655	40	3e-05
Predicted transcriptional regulator protein	K	Contig10	Noc1716	COG1959	109	7e-26
Predicted transcriptional regulator protein	K	Contig10	Noc1716	COG2524	38	4e-04
Predicted transcriptional regulator protein	K	Contig10	Noc1785	COG3620	35	0.009
Predicted transcriptional regulator protein	K	Contig10	Noc1785	COG2524	55	1e-08
Predicted transcriptional regulator protein	K	Contig10	Noc1840	COG2524	44	2e-05
Predicted transcriptional regulator protein	K	Contig10	Noc2011	COG3620	38	7e-04
Predicted transcriptional regulator protein	K	Contig10	Noc2011	COG2524	53	2e-08
Predicted transcriptional regulator protein	K	Contig10	Noc2060	COG2345	115	3e-27
Predicted transcriptional regulator protein	K	Contig10	Noc2060	COG2865	36	0.002
Predicted transcriptional regulator protein	K	Contig10	Noc2263	COG2524	36	0.005
Predicted transcriptional regulator protein	K	Contig10	Noc2491	COG1959	113	8e-27
Predicted transcriptional regulator protein	K	Contig10	Noc2542	COG1396	39	2e-04
Predicted transcriptional regulator protein	K	Contig10	Noc2542	COG3620	35	0.002
Predicted transcriptional regulator protein	K	Contig10	Noc2542	COG1476	42	2e-05
Predicted transcriptional regulator protein	K	Contig10	Noc2738	COG2944	73	4e-15
Predicted transcriptional regulator protein	K	Contig10	Noc2738	COG1396	35	0.001
Predicted transcriptional regulator protein	K	Contig10	Noc2760	COG0789	88	2e-19
Predicted transcriptional regulator protein	K	Contig10	Noc2788	COG2524	46	4e-06
Predicted transcriptional regulator protein	K	Contig10	Noc2801	COG2524	38	0.002
Predicted transcriptional regulator protein	K	Contig10	Noc2813	COG2524	43	2e-05
Predicted transcriptional regulator protein	K	Contig10	Noc2930	COG3620	35	0.002
Predicted transcriptional regulator protein	K	Contig10	Noc2967	COG1959	126	7e-31
Predicted transcriptional regulator protein	K	Contig10	Noc3082	COG1475	131	4e-32
Predicted transcriptional regulator protein	K	Contig9	NocA0014	COG1475	104	7e-24
Predicted transcriptional regulator protein	K	Contig9	NocA0038	COG1396	36	7e-04
Predicted transcriptional regulator protein	K	Contig9	NocA0041	COG1396	37	2e-04
Predicted transcriptional regulator protein	K	Contig9	NocA0041	COG1476	36	7e-04
Predicted transcriptional regulator protein	K	Contig9	NocA0041	COG3655	42	1e-05
Putative transcriptional regulator protein	K	Contig10	Noc0189	COG1521	152	3e-38
Putative transcriptional regulator protein	K	Contig10	Noc0368	COG1678	220	7e-59
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc0044	COG3604	37	0.003
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc0206	COG3604	44	2e-05
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc0273	COG3604	307	9e-85
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc0537	COG3604	328	4e-91
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc0723	COG3604	328	5e-91
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc0785	COG3604	333	2e-92
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc1049	COG3604	44	2e-06
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc1552	COG3604	42	1e-04
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc1623	COG3604	313	2e-86
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc1881	COG3604	304	6e-84
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc1911	COG3604	333	2e-92
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc1997	COG3604	344	5e-96
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc2361	COG3604	326	3e-90
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc2362	COG3604	373	1.0e-104
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig10	Noc3019	COG3604	175	5e-45
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc0207	COG3829	54	5e-08
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc0226	COG3829	50	6e-07
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc0273	COG3829	303	1e-83
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc0335	COG3829	40	6e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc0537	COG3829	341	3e-95
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc0723	COG3829	351	7e-98
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc0785	COG3829	346	2e-96
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1049	COG3829	43	3e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1331	COG3829	32	0.009
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1400	COG3829	48	4e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1609	COG3829	38	0.004
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1623	COG3829	327	1e-90
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1700	COG3829	43	4e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1703	COG3829	44	2e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1756	COG3829	54	4e-08
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1881	COG3829	317	9e-88
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1911	COG3829	356	2e-99
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc1997	COG3829	364	1.0e-102
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2003	COG3829	41	3e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2021	COG3829	46	8e-06
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2361	COG3829	366	1.0e-102
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2362	COG3829	368	1.0e-103
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2450	COG3829	60	4e-10
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2569	COG3829	38	0.002
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2682	COG3829	40	5e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2979	COG3829	65	2e-11
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc2986	COG3829	43	1e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig10	Noc3019	COG3829	215	4e-57
Transcriptional regulator	K	Contig10	Noc0199	COG1309	64	8e-12
Transcriptional regulator	K	Contig10	Noc0334	COG0583	164	1e-41
Transcriptional regulator	K	Contig10	Noc1837	COG0583	142	4e-35
Transcriptional regulator	K	Contig10	Noc1919	COG0583	162	2e-41
Transcriptional regulator	K	Contig10	Noc2060	COG1414	36	0.003
Transcriptional regulator	K	Contig10	Noc2292	COG0583	147	1e-36
Transcriptional regulator	K	Contig10	Noc2410	COG0583	121	7e-29
Transcriptional regulator	K	Contig10	Noc2820	COG1309	39	2e-04
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc0273	COG3283	224	8e-60
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc0537	COG3283	241	6e-65
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc0723	COG3283	254	1e-68
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc0785	COG3283	231	1e-61
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc1623	COG3283	225	4e-60
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc1848	COG3283	35	0.009
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc1881	COG3283	230	1e-61
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc1911	COG3283	261	9e-71
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc1997	COG3283	246	2e-66
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc2361	COG3283	240	1e-64
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc2362	COG3283	240	1e-64
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc2979	COG3283	46	1e-05
Transcriptional regulator of aromatic amino acids metabolism	K	Contig10	Noc3019	COG3283	164	1e-41
Transcriptional regulator of heat shock gene	K	Contig10	Noc2813	COG1420	309	2e-85
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc0175	COG1167	85	6e-18
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc0881	COG1167	145	4e-36
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc0891	COG1167	348	7e-97
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc1138	COG1167	130	2e-31
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc1151	COG1167	37	0.002
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc1561	COG1167	39	7e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc1649	COG1167	42	7e-05
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc2100	COG1167	47	3e-06
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc2124	COG1167	136	3e-33
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc2455	COG1167	159	5e-40
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc2487	COG1167	43	4e-05
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig10	Noc2777	COG1167	96	3e-21
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0140	COG1221	38	0.001
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0273	COG1221	248	7e-67
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0537	COG1221	273	2e-74
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0723	COG1221	271	7e-74
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc0785	COG1221	254	1e-68
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1049	COG1221	40	4e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1623	COG1221	246	3e-66
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1675	COG1221	36	0.005
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1848	COG1221	35	0.005
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1881	COG1221	265	5e-72
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1911	COG1221	263	2e-71
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc1997	COG1221	258	7e-70
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc2361	COG1221	246	2e-66
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc2362	COG1221	277	1e-75
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc2381	COG1221	38	0.003
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc2425	COG1221	42	2e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig10	Noc3019	COG1221	178	6e-46
Transcriptional regulators	K	Contig10	Noc0354	COG1737	45	5e-06
Transcriptional regulators	K	Contig10	Noc0437	COG1737	34	0.002
Transcriptional regulators	K	Contig10	Noc0891	COG1802	52	1e-07
Transcriptional regulators	K	Contig10	Noc0891	COG2188	66	5e-12
Transcriptional regulators	K	Contig10	Noc0891	COG2186	67	3e-12
Transcriptional regulators	K	Contig10	Noc1027	COG1846	61	4e-11
Transcriptional regulators	K	Contig10	Noc1027	COG1522	39	2e-04
Transcriptional regulators	K	Contig10	Noc1088	COG1846	46	2e-06
Transcriptional regulators	K	Contig10	Noc1270	COG1609	48	7e-07
Transcriptional regulators	K	Contig10	Noc2060	COG1846	41	6e-05
Transcriptional regulators	K	Contig10	Noc2060	COG1522	39	4e-04
Transcriptional regulators	K	Contig10	Noc2788	COG1737	79	4e-16
Transcriptional regulators	K	Contig10	Noc2967	COG2188	33	0.010
Transcriptional regulators	K	Contig10	Noc3071	COG1737	55	2e-08
Transcriptional regulators of sugar metabolism	K	Contig10	Noc1027	COG1349	34	0.007
Transcriptional regulators of sugar metabolism	K	Contig10	Noc2060	COG1349	43	2e-05
Transcriptional regulator/sugar kinase	K	Contig10	Noc1347	COG1940	37	0.002

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcription regulator of the Arc/MetJ class	K	Contig10	Noc0414	COG5450	45	1e-06
Transcription regulator of the Arc/MetJ class	K	Contig10	Noc1521	COG5450	32	0.008
Transcription-repair coupling factor (superfamily II helicase)	K	Contig10	Noc0028	COG1197	63	9e-11
Transcription-repair coupling factor (superfamily II helicase)	K	Contig10	Noc1139	COG1197	146	5e-36
Transcription-repair coupling factor (superfamily II helicase)	K	Contig10	Noc1216	COG1197	356	3e-99
Transcription-repair coupling factor (superfamily II helicase)	K	Contig10	Noc1642	COG1197	1402	0.0

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