| Kingdom |
Category |
Genus/Species |
Count |
|
|
|
45 |
| Archaea |
|
|
39 |
| |
|
|
45 |
| |
Crenarchaeota |
|
4 |
| |
|
Ignicoccus hospitalis (iho) |
1 |
| |
|
Metallosphaera sedula (mse) |
1 |
| |
|
Nitrosopumilus maritimus (nmr) |
1 |
| |
|
Thermofilum pendens (tpe) |
1 |
| |
Euryarchaeota |
|
35 |
| |
|
Archaeoglobus fulgidus (afu) |
1 |
| |
|
Halobacterium sp. NRC-1 (hal) |
1 |
| |
|
Haloarcula marismortui (hma) |
1 |
| |
|
Methanosarcina acetivorans (mac) |
7 |
| |
|
Methanosarcina barkeri (mba) |
7 |
| |
|
Methanoculleus marisnigri (mem) |
2 |
| |
|
Methanospirillum hungatei (mhu) |
2 |
| |
|
Methanococcus jannaschii (mja) |
1 |
| |
|
Methanopyrus kandleri (mka) |
2 |
| |
|
Methanosarcina mazei (mma) |
4 |
| |
|
Methanosphaera stadtmanae (mst) |
1 |
| |
|
Natronomonas pharaonis (nph) |
1 |
| |
|
Pyrococcus furiosus (pfu) |
2 |
| |
|
Pyrococcus horikoshii (pho) |
1 |
| |
|
Uncultured methanogenic archaeon RC-I (rci) |
1 |
| |
|
Thermococcus kodakaraensis (tko) |
1 |
| Bacteria |
|
|
2747 |
| |
Acidobacteria |
|
23 |
| |
|
Acidobacteria bacterium (aba) |
11 |
| |
|
Solibacter usitatus (sus) |
12 |
| |
Actinobacteria |
|
46 |
| |
|
Arthrobacter aurescens (aau) |
2 |
| |
|
Arthrobacter sp. FB24 (art) |
1 |
| |
|
Corynebacterium diphtheriae (cdi) |
1 |
| |
|
Corynebacterium jeikeium (cjk) |
1 |
| |
|
Clavibacter michiganensis (cmi) |
1 |
| |
|
Frankia sp. CcI3 (fra) |
2 |
| |
|
Frankia sp. EAN1pec (fre) |
5 |
| |
|
Mycobacterium bovis BCG Pasteur 1173P2 (mbb) |
2 |
| |
|
Mycobacterium sp. JLS (mjl) |
1 |
| |
|
Mycobacterium sp. KMS (mkm) |
1 |
| |
|
Mycobacterium leprae (mle) |
1 |
| |
|
Mycobacterium tuberculosis H37Ra (mra) |
1 |
| |
|
Mycobacterium smegmatis (msm) |
1 |
| |
|
Mycobacterium ulcerans (mul) |
1 |
| |
|
Nocardia farcinica (nfa) |
1 |
| |
|
Rhodococcus sp. RHA1 (rha) |
1 |
| |
|
Rubrobacter xylanophilus (rxy) |
14 |
| |
|
Salinispora arenicola (saq) |
2 |
| |
|
Streptomyces coelicolor (sco) |
3 |
| |
|
Saccharopolyspora erythraea (sen) |
1 |
| |
|
Salinispora tropica (stp) |
1 |
| |
|
Thermobifida fusca (tfu) |
2 |
| |
Bacteroides |
|
30 |
| |
|
Bacteroides fragilis YCH46 (bfr) |
1 |
| |
|
Bacteroides fragilis NCTC9343 (bfs) |
1 |
| |
|
Cytophaga hutchinsonii (chu) |
6 |
| |
|
Flavobacterium johnsoniae (fjo) |
2 |
| |
|
Gramella forsetii (gfo) |
5 |
| |
|
Parabacteroides distasonis (pdi) |
1 |
| |
|
Salinibacter ruber (sru) |
14 |
| |
Chlamydia |
|
4 |
| |
|
Chlamydia trachomatis serovar A (cta) |
1 |
| |
|
Candidatus Protochlamydia amoebophila (pcu) |
3 |
| |
Cyanobacteria |
|
140 |
| |
|
Acaryochloris marina (amr) |
43 |
| |
|
Anabaena sp. PCC7120 (ana) |
17 |
| |
|
Anabaena variabilis (ava) |
9 |
| |
|
Cyanobacteria Yellowstone A-Prime (cya) |
5 |
| |
|
Cyanobacteria Yellowstone B-Prime (cyb) |
9 |
| |
|
Gloeobacter violaceus (gvi) |
12 |
| |
|
Prochlorococcus marinus NATL1A (pme) |
1 |
| |
|
Synechococcus sp. CC9605 (syd) |
1 |
| |
|
Synechococcus sp. CC9902 (sye) |
1 |
| |
|
Synechococcus elongatus PCC7942 (syf) |
8 |
| |
|
Synechocystis sp. PCC6803 (syn) |
8 |
| |
|
Synechococcus sp. WH7803 (syx) |
1 |
| |
|
Thermosynechococcus elongatus (tel) |
5 |
| |
|
Trichodesmium erythraeum (ter) |
20 |
| |
Deinococcus-Thermus |
|
7 |
| |
|
Deinococcus geothermalis (dge) |
3 |
| |
|
Deinococcus radiodurans (dra) |
1 |
| |
|
Thermus thermophilus HB27 (tth) |
1 |
| |
|
Thermus thermophilus HB8 (ttj) |
2 |
| |
Firmicutes |
|
69 |
| |
|
Bacillus amyloliquefaciens (bay) |
2 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
1 |
| |
|
Bacillus clausii (bcl) |
1 |
| |
|
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
2 |
| |
|
Bacillus halodurans (bha) |
8 |
| |
|
Bacillus subtilis (bsu) |
2 |
| |
|
Clostridium kluyveri (ckl) |
1 |
| |
|
Caldicellulosiruptor saccharolyticus (csc) |
2 |
| |
|
Clostridium tetani E88 (ctc) |
4 |
| |
|
Clostridium thermocellum (cth) |
6 |
| |
|
Desulfotomaculum reducens (drm) |
6 |
| |
|
Desulfitobacterium hafniense (dsy) |
4 |
| |
|
Enterococcus faecalis (efa) |
1 |
| |
|
Geobacillus kaustophilus (gka) |
1 |
| |
|
Geobacillus thermodenitrificans (gtn) |
3 |
| |
|
Lactobacillus helveticus (lhe) |
1 |
| |
|
Moorella thermoacetica (mta) |
8 |
| |
|
Oceanobacillus iheyensis (oih) |
2 |
| |
|
Pelotomaculum thermopropionicum (pth) |
3 |
| |
|
Symbiobacterium thermophilum (sth) |
1 |
| |
|
Syntrophomonas wolfei (swo) |
8 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
2 |
| |
Fusobacteria |
|
2 |
| |
|
Fusobacterium nucleatum (fnu) |
2 |
| |
Green nonsulfur bacteria |
|
29 |
| |
|
Chloroflexus aurantiacus (cau) |
6 |
| |
|
Dehalococcoides sp. BAV1 (deb) |
1 |
| |
|
Dehalococcoides sp. CBDB1 (deh) |
1 |
| |
|
Dehalococcoides ethenogenes (det) |
2 |
| |
|
Herpetosiphon aurantiacus (hau) |
4 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
4 |
| |
|
Roseiflexus sp. RS-1 (rrs) |
11 |
| |
Green sulfur bacteria |
|
10 |
| |
|
Chlorobium chlorochromatii (cch) |
1 |
| |
|
Chlorobium phaeobacteroides (cph) |
4 |
| |
|
Chlorobaculum tepidum (cte) |
4 |
| |
|
Pelodictyon luteolum (plt) |
1 |
| |
Hyperthermophilic bacteria |
|
2 |
| |
|
Aquifex aeolicus (aae) |
2 |
| |
Planctomyces |
|
20 |
| |
|
Rhodopirellula baltica (rba) |
20 |
| |
Proteobacteria |
|
2362 |
| |
|
Acidovorax avenae (aav) |
10 |
| |
|
Alcanivorax borkumensis (abo) |
40 |
| |
|
Arcobacter butzleri (abu) |
1 |
| |
|
Acinetobacter baumannii (acb) |
1 |
| |
|
Acinetobacter sp. ADP1 (aci) |
3 |
| |
|
Acidiphilium cryptum JF-5 (acr) |
4 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
228 |
| |
|
Anaeromyxobacter sp. Fw109-5 (afw) |
9 |
| |
|
Aeromonas hydrophila (aha) |
10 |
| |
|
Acidovorax sp. JS42 (ajs) |
6 |
| |
|
Actinobacillus pleuropneumoniae (apl) |
1 |
| |
|
Aeromonas salmonicida (asa) |
17 |
| |
|
Agrobacterium tumefaciens C58 (Cereon) (atc) |
2 |
| |
|
Azoarcus sp. BH72 (azo) |
17 |
| |
|
Burkholderia cepacia (bam) |
3 |
| |
|
Bdellovibrio bacteriovorus (bba) |
5 |
| |
|
Bordetella bronchiseptica (bbr) |
2 |
| |
|
Bradyrhizobium sp. BTAi1 (bbt) |
1 |
| |
|
Burkholderia cenocepacia HI2424 (bch) |
2 |
| |
|
Burkholderia cenocepacia AU1054 (bcn) |
1 |
| |
|
Brucella canis (bcs) |
1 |
| |
|
Bradyrhizobium japonicum (bja) |
4 |
| |
|
Brucella abortus (bmb) |
1 |
| |
|
Burkholderia mallei NCTC 10247 (bmn) |
2 |
| |
|
Burkholderia multivorans (bmu) |
6 |
| |
|
Burkholderia pseudomallei 668 (bpd) |
2 |
| |
|
Burkholderia pseudomallei 1106a (bpl) |
1 |
| |
|
Bordetella petrii (bpt) |
4 |
| |
|
Bradyrhizobium sp. ORS278 (bra) |
1 |
| |
|
Burkholderia thailandensis (bte) |
4 |
| |
|
Burkholderia sp. 383 (bur) |
3 |
| |
|
Burkholderia vietnamiensis (bvi) |
5 |
| |
|
Burkholderia xenovorans (bxe) |
10 |
| |
|
Coxiella burnetii Dugway 7E9-12 (cbd) |
14 |
| |
|
Coxiella burnetii RSA 331 (cbs) |
9 |
| |
|
Coxiella burnetii RSA 493 (cbu) |
2 |
| |
|
Campylobacter curvus (ccv) |
1 |
| |
|
Citrobacter koseri ATCC BAA-895 (cko) |
2 |
| |
|
Colwellia psychrerythraea (cps) |
7 |
| |
|
Chromohalobacter salexigens (csa) |
26 |
| |
|
Chromobacterium violaceum (cvi) |
12 |
| |
|
Delftia acidovorans (dac) |
2 |
| |
|
Dechloromonas aromatica (dar) |
10 |
| |
|
Desulfovibrio desulfuricans (dde) |
7 |
| |
|
Dichelobacter nodosus (dno) |
8 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
11 |
| |
|
Desulfotalea psychrophila (dps) |
7 |
| |
|
Dinoroseobacter shibae (dsh) |
2 |
| |
|
Desulfovibrio vulgaris DP4 (dvl) |
3 |
| |
|
Desulfovibrio vulgaris Hildenborough (dvu) |
2 |
| |
|
Azoarcus sp. EbN1 (eba) |
53 |
| |
|
Erwinia carotovora (eca) |
4 |
| |
|
Escherichia coli CFT073 (UPEC) (ecc) |
1 |
| |
|
Escherichia coli 536 (UPEC) (ecp) |
1 |
| |
|
Escherichia coli APEC O1 (ecv) |
1 |
| |
|
Escherichia coli E24377A (ecw) |
1 |
| |
|
Erythrobacter litoralis (eli) |
4 |
| |
|
Enterobacter sp. 638 (ent) |
2 |
| |
|
Enterobacter sakazakii (esa) |
6 |
| |
|
Granulobacter bethesdensis (gbe) |
1 |
| |
|
Gluconacetobacter diazotrophicus (gdi) |
2 |
| |
|
Geobacter metallireducens (gme) |
24 |
| |
|
Gluconobacter oxydans (gox) |
2 |
| |
|
Geobacter sulfurreducens (gsu) |
21 |
| |
|
Geobacter uraniumreducens (gur) |
14 |
| |
|
Herminiimonas arsenicoxydans (har) |
8 |
| |
|
Hahella chejuensis (hch) |
70 |
| |
|
Haemophilus ducreyi (hdu) |
1 |
| |
|
Halorhodospira halophila (hha) |
62 |
| |
|
Helicobacter hepaticus (hhe) |
1 |
| |
|
Hyphomonas neptunium (hne) |
3 |
| |
|
Helicobacter pylori HPAG1 (hpa) |
1 |
| |
|
Haemophilus somnus (hso) |
1 |
| |
|
Idiomarina loihiensis (ilo) |
18 |
| |
|
Jannaschia sp. CCS1 (jan) |
2 |
| |
|
Klebsiella pneumoniae (kpn) |
3 |
| |
|
Legionella pneumophila Corby (lpc) |
10 |
| |
|
Legionella pneumophila Lens (lpf) |
2 |
| |
|
Legionella pneumophila Philadelphia 1 (lpn) |
6 |
| |
|
Legionella pneumophila Paris (lpp) |
3 |
| |
|
Magnetospirillum magneticum (mag) |
11 |
| |
|
Marinobacter aquaeolei (maq) |
79 |
| |
|
Methylococcus capsulatus (mca) |
322 |
| |
|
Mesorhizobium sp. BNC1 (mes) |
5 |
| |
|
Methylobacterium extorquens (mex) |
4 |
| |
|
Methylobacillus flagellatus (mfa) |
40 |
| |
|
Magnetococcus sp. MC-1 (mgm) |
19 |
| |
|
Maricaulis maris (mmr) |
5 |
| |
|
Minibacterium massiliensis (mms) |
4 |
| |
|
Marinomonas sp. MWYL1 (mmw) |
12 |
| |
|
Methylibium petroleiphilum (mpt) |
7 |
| |
|
Mannheimia succiniciproducens (msu) |
1 |
| |
|
Myxococcus xanthus (mxa) |
14 |
| |
|
Novosphingobium aromaticivorans (nar) |
1 |
| |
|
Nitrosomonas eutropha (net) |
55 |
| |
|
Nitrosomonas europaea (neu) |
68 |
| |
|
Nitrobacter hamburgensis (nha) |
4 |
| |
|
Neisseria meningitidis Z2491 (serogroup A) (nma) |
1 |
| |
|
Neisseria meningitidis FAM18 (nmc) |
2 |
| |
|
Neisseria meningitidis 053442 (nmn) |
4 |
| |
|
Nitrosospira multiformis (nmu) |
129 |
| |
|
Nitrobacter winogradskyi (nwi) |
1 |
| |
|
Ochrobactrum anthropi (oan) |
4 |
| |
|
Pseudomonas aeruginosa PAO1 (pae) |
4 |
| |
|
Pseudomonas aeruginosa PA7 (pap) |
31 |
| |
|
Psychrobacter arcticum (par) |
1 |
| |
|
Pseudoalteromonas atlantica (pat) |
10 |
| |
|
Pseudomonas aeruginosa UCBPP-PA14 (pau) |
16 |
| |
|
Pelobacter carbinolicus (pca) |
30 |
| |
|
Psychrobacter cryohalolentis (pcr) |
1 |
| |
|
Paracoccus denitrificans (pde) |
3 |
| |
|
Pseudomonas entomophila (pen) |
10 |
| |
|
Pseudomonas fluorescens Pf-5 (pfl) |
17 |
| |
|
Pseudomonas fluorescens PfO-1 (pfo) |
11 |
| |
|
Pseudoalteromonas haloplanktis (pha) |
6 |
| |
|
Psychromonas ingrahamii (pin) |
11 |
| |
|
Parvibaculum lavamentivorans (pla) |
12 |
| |
|
Photorhabdus luminescens (plu) |
7 |
| |
|
Pasteurella multocida (pmu) |
1 |
| |
|
Pseudomonas mendocina (pmy) |
36 |
| |
|
Polaromonas naphthalenivorans (pna) |
20 |
| |
|
Polaromonas sp. JS666 (pol) |
9 |
| |
|
Pelobacter propionicus (ppd) |
10 |
| |
|
Pseudomonas putida F1 (ppf) |
10 |
| |
|
Photobacterium profundum (ppr) |
6 |
| |
|
Pseudomonas putida KT2440 (ppu) |
4 |
| |
|
Psychrobacter sp. PRwf-1 (prw) |
1 |
| |
|
Pseudomonas stutzeri (psa) |
36 |
| |
|
Pseudomonas syringae pv. syringae B728a (psb) |
4 |
| |
|
Pseudomonas syringae pv. phaseolicola 1448A (psp) |
12 |
| |
|
Pseudomonas syringae pv. tomato DC3000 (pst) |
7 |
| |
|
Roseobacter denitrificans (rde) |
1 |
| |
|
Ralstonia eutropha H16 (reh) |
6 |
| |
|
Rhizobium etli (ret) |
5 |
| |
|
Ralstonia eutropha JMP134 (reu) |
6 |
| |
|
Rickettsia felis (rfe) |
1 |
| |
|
Rhodoferax ferrireducens (rfr) |
6 |
| |
|
Rhizobium leguminosarum (rle) |
3 |
| |
|
Candidatus Ruthia magnifica (rma) |
2 |
| |
|
Ralstonia metallidurans (rme) |
8 |
| |
|
Rhodopseudomonas palustris CGA009 (rpa) |
1 |
| |
|
Rhodopseudomonas palustris HaA2 (rpb) |
5 |
| |
|
Rhodopseudomonas palustris BisB18 (rpc) |
3 |
| |
|
Rhodopseudomonas palustris BisB5 (rpd) |
2 |
| |
|
Rhodopseudomonas palustris BisA53 (rpe) |
4 |
| |
|
Rhodospirillum rubrum (rru) |
10 |
| |
|
Ralstonia solanacearum (rso) |
1 |
| |
|
Rhodobacter sphaeroides 2.4.1 (rsp) |
2 |
| |
|
Syntrophus aciditrophicus (sat) |
5 |
| |
|
Shewanella amazonensis (saz) |
4 |
| |
|
Shewanella baltica OS155 (sbl) |
1 |
| |
|
Shewanella baltica OS185 (sbm) |
2 |
| |
|
Shewanella baltica OS195 (sbn) |
4 |
| |
|
Sorangium cellulosum (scl) |
22 |
| |
|
Saccharophagus degradans (sde) |
27 |
| |
|
Shewanella denitrificans (sdn) |
4 |
| |
|
Shigella dysenteriae (sdy) |
1 |
| |
|
Salmonella enterica serovar Choleraesuis (sec) |
1 |
| |
|
Salmonella enterica subsp. arizonae (ses) |
4 |
| |
|
Shewanella frigidimarina (sfr) |
10 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
18 |
| |
|
Shigella flexneri 2457T (serotype 2a) (sfx) |
2 |
| |
|
Shewanella sp. ANA-3 (shn) |
13 |
| |
|
Shewanella sp. W3-18-1 (shw) |
2 |
| |
|
Silicibacter pomeroyi (sil) |
3 |
| |
|
Shewanella loihica (slo) |
8 |
| |
|
Sinorhizobium medicae (smd) |
3 |
| |
|
Sinorhizobium meliloti (sme) |
3 |
| |
|
Shewanella oneidensis (son) |
3 |
| |
|
Shewanella putrefaciens (spc) |
1 |
| |
|
Serratia proteamaculans (spe) |
2 |
| |
|
Shewanella pealeana (spl) |
1 |
| |
|
Salmonella enterica serovar Paratyphi B (spq) |
1 |
| |
|
Salmonella enterica serovar Paratyphi A (spt) |
1 |
| |
|
Shewanella sediminis (sse) |
7 |
| |
|
Sulfurovum sp. NBC37-1 (sun) |
5 |
| |
|
Sphingomonas wittichii (swi) |
2 |
| |
|
Thiobacillus denitrificans (tbd) |
63 |
| |
|
Thiomicrospira crunogena (tcx) |
34 |
| |
|
Thiomicrospira denitrificans (tdn) |
1 |
| |
|
Verminephrobacter eiseniae (vei) |
4 |
| |
|
Vibrio fischeri (vfi) |
3 |
| |
|
Vibrio harveyi (vha) |
2 |
| |
|
Candidatus Vesicomyosocius okutanii (vok) |
1 |
| |
|
Vibrio parahaemolyticus (vpa) |
4 |
| |
|
Vibrio vulnificus CMCP6 (vvu) |
2 |
| |
|
Vibrio vulnificus YJ016 (vvy) |
4 |
| |
|
Xanthomonas axonopodis (xac) |
6 |
| |
|
Xanthobacter autotrophicus (xau) |
3 |
| |
|
Xanthomonas campestris pv. campestris 8004 (xcb) |
10 |
| |
|
Xanthomonas campestris pv. campestris ATCC 33913 (xcc) |
1 |
| |
|
Xanthomonas campestris pv. vesicatoria (xcv) |
5 |
| |
|
Xylella fastidiosa 9a5c (xfa) |
1 |
| |
|
Xylella fastidiosa Temecula1 (xft) |
3 |
| |
|
Xanthomonas oryzae MAFF311018 (xom) |
3 |
| |
|
Xanthomonas oryzae KACC10331 (xoo) |
3 |
| |
|
Yersinia enterocolitica (yen) |
3 |
| |
|
Yersinia pseudotuberculosis IP31758 (ypi) |
1 |
| |
|
Yersinia pestis Nepal516 (ypn) |
1 |
| |
Spirochete |
|
3 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
1 |
| |
|
Leptospira interrogans serovar Copenhageni (lic) |
2 |
| Eukaryotes |
|
|
18 |
| |
Animals |
|
10 |
| |
|
Homo sapiens (human) (hsa) |
1 |
| |
|
Mus musculus (mouse) (mmu) |
1 |
| |
|
Nematostella vectensis (sea anemone) (nve) |
5 |
| |
|
Rattus norvegicus (rat) (rno) |
1 |
| |
|
Strongylocentrotus purpuratus (purple sea urchin) (spu) |
1 |
| |
|
Xenopus laevis (African clawed frog) (xla) |
1 |
| |
Fungi |
|
4 |
| |
|
Aspergillus fumigatus (afm) |
1 |
| |
|
Aspergillus niger (ang) |
2 |
| |
|
Yarrowia lipolytica (yli) |
1 |
| |
Plants |
|
2 |
| |
|
Arabidopsis thaliana (thale cress) (ath) |
1 |
| |
|
Ostreococcus lucimarinus (olu) |
1 |
| |
Protists |
|
2 |
| |
|
Cryptosporidium parvum (cpv) |
1 |
| |
|
Plasmodium falciparum (pfa) |
1 |
| NULL |
|
|
170 |
| TOTAL |
|
|
3019 |
![[space]](http://homer.ornl.gov/compbio/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}