Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 4 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 1 |
| Glu | 1 |
| Gly | 3 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 0 |
| Val | 3 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig12 | 3 | 142086 ..142161 | 0..0 | 83.41 | 66.94 |
| Ala | GGC | Contig12 | 38 | 1838220..1838145 | 0..0 | 86.46 | 68.18 |
| Ala | TGC | Contig12 | 10 | 564366 ..564441 | 0..0 | 87.91 | 75.78 |
| Arg | ACG | Contig12 | 22 | 2261847..2261923 | 0..0 | 86.25 | 70.42 |
| Arg | CCG | Contig12 | 43 | 218980 ..218904 | 0..0 | 85.36 | 57.58 |
| Arg | CCT | Contig12 | 1 | 27371 ..27446 | 0..0 | 79.34 | 50.14 |
| Arg | TCT | Contig12 | 6 | 253241 ..253317 | 0..0 | 89.17 | 66.59 |
| Asn | GTT | Contig12 | 37 | 1935737..1935662 | 0..0 | 85.92 | 62.24 |
| Asp | GTC | Contig12 | 30 | 2662654..2662578 | 0..0 | 94.55 | 73.65 |
| Cys | GCA | Contig12 | 18 | 1464755..1464828 | 0..0 | 69.14 | 50.27 |
| Gln | TTG | Contig12 | 11 | 673637 ..673711 | 0..0 | 76.23 | 51.24 |
| Glu | TTC | Contig12 | 39 | 1838086..1838011 | 0..0 | 60.87 | 31.07 |
| Gly | CCC | Contig12 | 2 | 80715 ..80788 | 0..0 | 78.67 | 61.21 |
| Gly | GCC | Contig12 | 17 | 1464533..1464607 | 0..0 | 89.96 | 65.79 |
| Gly | TCC | Contig12 | 13 | 874898 ..874971 | 0..0 | 82.17 | 64.72 |
| His | GTG | Contig12 | 7 | 253378 ..253452 | 0..0 | 75.74 | 54.96 |
| Ile | GAT | Contig12 | 9 | 564282 ..564358 | 0..0 | 100.23 | 77.52 |
| Leu | CAA | Contig12 | 23 | 2769529..2769615 | 0..0 | 78.39 | 47.60 |
| Leu | CAG | Contig12 | 21 | 2244919..2245005 | 0..0 | 74.62 | 42.12 |
| Leu | GAG | Contig12 | 16 | 1257731..1257815 | 0..0 | 65.74 | 36.34 |
| Leu | TAA | Contig12 | 19 | 1488892..1488980 | 0..0 | 77.93 | 47.45 |
| Leu | TAG | Contig12 | 28 | 2669174..2669090 | 0..0 | 77.73 | 49.88 |
| Lys | CTT | Contig12 | 4 | 155336 ..155411 | 0..0 | 92.62 | 65.57 |
| Lys | TTT | Contig12 | 24 | 3123890..3123965 | 0..0 | 92.13 | 70.69 |
| Met | CAT | Contig12 | 27 | 2791848..2791773 | 0..0 | 85.90 | 61.22 |
| Met | CAT | Contig12 | 33 | 2348706..2348630 | 0..0 | 94.16 | 69.92 |
| Met | CAT | Contig12 | 35 | 2144669..2144593 | 0..0 | 85.01 | 60.51 |
| Phe | GAA | Contig12 | 26 | 3043333..3043258 | 0..0 | 89.38 | 71.20 |
| Pro | CGG | Contig12 | 36 | 2074832..2074756 | 0..0 | 84.29 | 61.16 |
| Pro | GGG | Contig12 | 8 | 553914 ..553990 | 0..0 | 80.07 | 58.41 |
| Pro | TGG | Contig12 | 5 | 253129 ..253205 | 0..0 | 83.20 | 60.50 |
| Ser | CGA | Contig12 | 31 | 2628764..2628672 | 0..0 | 71.81 | 39.83 |
| Ser | GCT | Contig12 | 34 | 2233075..2232983 | 0..0 | 73.41 | 43.52 |
| Ser | GGA | Contig12 | 41 | 1082485..1082394 | 0..0 | 80.91 | 53.26 |
| Ser | TGA | Contig12 | 32 | 2514801..2514714 | 0..0 | 79.21 | 43.74 |
| Thr | CGT | Contig12 | 25 | 3157579..3157654 | 0..0 | 94.63 | 71.27 |
| Thr | GGT | Contig12 | 14 | 875060 ..875134 | 0..0 | 86.92 | 60.99 |
| Thr | TGT | Contig12 | 40 | 1162761..1162686 | 0..0 | 88.64 | 71.67 |
| Trp | CCA | Contig12 | 15 | 876463 ..876538 | 0..0 | 80.36 | 57.49 |
| Tyr | GTA | Contig12 | 12 | 874636 ..874720 | 0..0 | 72.08 | 42.61 |
| Val | CAC | Contig12 | 20 | 1840080..1840154 | 0..0 | 78.01 | 50.87 |
| Val | GAC | Contig12 | 42 | 285189 ..285113 | 0..0 | 93.06 | 68.31 |
| Val | TAC | Contig12 | 29 | 2662742..2662667 | 0..0 | 91.62 | 69.33 |
tRNA Models
Contig12.trna1 (27371-27446) Length: 76 bp
Type: Arg Anticodon: CCT at 34-36 (27404-27406) Score: 79.34
HMM Sc=50.14 Sec struct Sc=29.20
* | * | * | * | * | * | * | *
Seq: GCCCTGGTAGCTCAGTGGAtAGAGCGACCCCCTCCTAAGGGGTAGGtCACACGTTCGATTCGTGTTCAGGGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna2 (80715-80788) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (80747-80749) Score: 78.67
HMM Sc=61.21 Sec struct Sc=17.46
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGCAGAGCAGAAGCTTCCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna3 (142086-142161) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (142119-142121) Score: 83.41
HMM Sc=66.94 Sec struct Sc=16.47
* | * | * | * | * | * | * | *
Seq: GGGGACGTAGCTCAGCTGGGAGAGCGTCGCGTTCGCAATGCGAAGGtCGGGAGTTCGATCCTCCTCGTCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna4 (155336-155411) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (155369-155371) Score: 92.62
HMM Sc=65.57 Sec struct Sc=27.05
* | * | * | * | * | * | * | *
Seq: GGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTCTTAATCCGTAGGtCGAGCGTTCGAATCGCTCACGACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna5 (253129-253205) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (253163-253165) Score: 83.20
HMM Sc=60.50 Sec struct Sc=22.70
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCGTAGCCtGGTAGCGCGCCTGGTTTGGGACCAGGATGtCGGGAGTTCAAATCTCTCCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna6 (253241-253317) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (253275-253277) Score: 89.17
HMM Sc=66.59 Sec struct Sc=22.58
* | * | * | * | * | * | * | *
Seq: GTGCCCGTAGCTCAACCGGAtAGAGCACCAGCCTTCTAAGCTGGGGGtTACAGGTTCGATTCCTGTCGGGCACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna7 (253378-253452) Length: 75 bp
Type: His Anticodon: GTG at 33-35 (253410-253412) Score: 75.74
HMM Sc=54.96 Sec struct Sc=20.78
* | * | * | * | * | * | * |
Seq: GTGGCTGTAGCTCAGCGGTAGAGTCCCGGATTGTGATTCCGGTTGtCGTGGGTTCGATCCCCATCAGCCACCCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna8 (553914-553990) Length: 77 bp
Type: Pro Anticodon: GGG at 35-37 (553948-553950) Score: 80.07
HMM Sc=58.41 Sec struct Sc=21.66
* | * | * | * | * | * | * | *
Seq: CGGGGCGTAGCGCAGCCtGGTAGCGTACTTGCATGGGGTGCAAGTGGtCGGAGGTTCAAATCCTCTCGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna9 (564282-564358) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (564316-564318) Score: 100.23
HMM Sc=77.52 Sec struct Sc=22.71
* | * | * | * | * | * | * | *
Seq: GGGTCTGTAGCTCAGTTGGTtAGAGCACACGCTTGATAAGCGTGGGGtCGGTGGTTCAAGTCCACCCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna10 (564366-564441) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (564399-564401) Score: 87.91
HMM Sc=75.78 Sec struct Sc=12.13
* | * | * | * | * | * | * | *
Seq: GGGGGTGTAGCTCAGATGGGAGAGCACCTGCTTTGCAAGCAGGGGGtCATCGGTTCGATCCCGTTCACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig12.trna11 (673637-673711) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (673669-673671) Score: 76.23
HMM Sc=51.24 Sec struct Sc=24.99
* | * | * | * | * | * | * |
Seq: TGGGGAGTCGCCAAGTGGTAAGGCACCGGATTTTGATTCCGGCATtCGTAGGTTCGATCCCTACCTCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna12 (874636-874720) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (874670-874672) Score: 72.08
HMM Sc=42.61 Sec struct Sc=29.47
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTTCCCGAGCGGTcaAAGGGATCAGACTGTAAATCTGACGGCTCTGCCTtCGAAGGTTCGAATCCTTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>.>..<.<...>>>>>.......<<<<<<<<<<<<....
Contig12.trna13 (874898-874971) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (874930-874932) Score: 82.17
HMM Sc=64.72 Sec struct Sc=17.45
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGAAGCCTTCCAAGCTTACGACGAGGGTTCGATTCCCTTCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna14 (875060-875134) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (875092-875094) Score: 86.92
HMM Sc=60.99 Sec struct Sc=25.93
* | * | * | * | * | * | * |
Seq: GCCCATGTAGCTCAGTGGCAGAGCACTCCCTTGGTAAGGGAGAGGtCGCCAGTTCAATCCTGGCCATGGGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna15 (876463-876538) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (876496-876498) Score: 80.36
HMM Sc=57.49 Sec struct Sc=22.87
* | * | * | * | * | * | * | *
Seq: AGGCCAGTAGCTCAATTGGCAGAGCGTCGGTCTCCAAAACCGAAGGtTGGGGGTTCGATGCCCTCCTGGCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna16 (1257731-1257815) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (1257765-1257767) Score: 65.74
HMM Sc=36.34 Sec struct Sc=29.40
* | * | * | * | * | * | * | * |
Seq: GCCGACGTGGTGGAATTGGTaGACACGCCGTCTTGAGGGGGCGGTGGCGAAAGCTGTGCGAGTTCGAGTCTCGCCGTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig12.trna17 (1464533-1464607) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (1464565-1464567) Score: 89.96
HMM Sc=65.79 Sec struct Sc=24.17
* | * | * | * | * | * | * |
Seq: GCGGGAATAGCTCAGTGGTAGAGCACAACCTTGCCAAGGTTGGGGtCGCGAGTTCGAGCCTCGTTTCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna18 (1464755-1464828) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (1464787-1464789) Score: 69.14
HMM Sc=50.27 Sec struct Sc=18.87
* | * | * | * | * | * | * |
Seq: GGCGGGGTGGCAGAGTGGTTATGCAGCGGCCTGCAAAGCCGTGGACGCCGGTTCGATTCCGACCCCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>.>>>.......<<<.<<<<<<<<....
Contig12.trna19 (1488892-1488980) Length: 89 bp
Type: Leu Anticodon: TAA at 35-37 (1488926-1488928) Score: 77.93
HMM Sc=47.45 Sec struct Sc=30.48
* | * | * | * | * | * | * | * | *
Seq: GCCCGGATGGTGAAATTGGTaGACACAAGGGACTTAAAATCCCTCGGGCTTAACCGCCCGTGCCGGTTCGATTCCGGCTCCGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....
Contig12.trna20 (1840080-1840154) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (1840112-1840114) Score: 78.01
HMM Sc=50.87 Sec struct Sc=27.14
* | * | * | * | * | * | * |
Seq: GGGCGGTTAACTCAGCGGTAGAGTGCCACCTTCACACGGTGGAAGcCACTGGTTCGATCCCAGTACCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna21 (2244919-2245005) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (2244953-2244955) Score: 74.62
HMM Sc=42.12 Sec struct Sc=32.50
* | * | * | * | * | * | * | * | *
Seq: GCCCAGATGGCGGAATTGGTaGACGCACTAGGTTCAGGTCCTAGCGGTGGCAACACTgTGGAGGTTCGAGTCCTCTTCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig12.trna22 (2261847-2261923) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (2261881-2261883) Score: 86.25
HMM Sc=70.42 Sec struct Sc=15.83
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGTTGGAtAGAGTACTTGGCTACGAACCAAGGGGtCGTGGGTTCGAATCCTGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna23 (2769529-2769615) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (2769563-2769565) Score: 78.39
HMM Sc=47.60 Sec struct Sc=30.79
* | * | * | * | * | * | * | * | *
Seq: GCCGGGATGGCGGAATTGGTaGACGCACGGGACTCAAAATCCCGCGACCGCGAGGTCATGGGGGTTCGATTCCCCCTCCCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<....
Contig12.trna24 (3123890-3123965) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (3123923-3123925) Score: 92.13
HMM Sc=70.69 Sec struct Sc=21.44
* | * | * | * | * | * | * | *
Seq: GGGCCGTTAGCTCAGCCGGTAGAGCAGCGGACTTTTAATCCGTTGGtCGGCAGTTCGAATCTGCCACGGCCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna25 (3157579-3157654) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (3157612-3157614) Score: 94.63
HMM Sc=71.27 Sec struct Sc=23.36
* | * | * | * | * | * | * | *
Seq: GCTGTTGTAGCTCAGTTGGTAGAGCAACTGATTCGTAATCAGTAGGtCGGAGGTTCGACTCCTCTCAACAGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna26 (3043333-3043258) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (3043300-3043298) Score: 89.38
HMM Sc=71.20 Sec struct Sc=18.18
* | * | * | * | * | * | * | *
Seq: GGCCAAGTAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTTGTGtCGGTGGTTCGATTCCGCCCTTGGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna27 (2791848-2791773) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (2791815-2791813) Score: 85.90
HMM Sc=61.22 Sec struct Sc=24.68
* | * | * | * | * | * | * | *
Seq: GGCGAATTAGCTCAGTGGTtAGAGCAGCGGAATCATAATCCGTTGGtCCCCAGTTCGAATCTGGGATTCGCTACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna28 (2669174-2669090) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (2669140-2669138) Score: 77.73
HMM Sc=49.88 Sec struct Sc=27.85
* | * | * | * | * | * | * | * |
Seq: GCGAAAGTGGCGGAATTGGTaGACGCACCAGATTTAGGTTCTGGCGCCGAAAGGTGTGGGGGTTCGAGTCCCCCCTTTCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig12.trna29 (2662742-2662667) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (2662709-2662707) Score: 91.62
HMM Sc=69.33 Sec struct Sc=22.29
* | * | * | * | * | * | * | *
Seq: GGGTGCTTAGCTCAGTTGGTAGAGCGTCGCCCTTACAAGGCGAATGtCGGCGGTTCGACCCCGTCAGCACCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna30 (2662654-2662578) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2662620-2662618) Score: 94.55
HMM Sc=73.65 Sec struct Sc=20.90
* | * | * | * | * | * | * | *
Seq: GGAGTGGTAGTTCAGTTGGTtAGAATACCGGCCTGTCACGCCGGGGGtCGCGGGTTCGAGTCCCGTCCACTCCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna31 (2628764-2628672) Length: 93 bp
Type: Ser Anticodon: CGA at 36-38 (2628729-2628727) Score: 71.81
HMM Sc=39.83 Sec struct Sc=31.98
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGGTACCGAAGTGGCcatAACGGCGCTGACTCGAAATCAGATGGTCAGGGTAACCTGGCACGTGGGTTCGAATCCCACCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<..>>>>.......<<<<...>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig12.trna32 (2514801-2514714) Length: 88 bp
Type: Ser Anticodon: TGA at 35-37 (2514767-2514765) Score: 79.21
HMM Sc=43.74 Sec struct Sc=35.47
* | * | * | * | * | * | * | * | *
Seq: GGAAGAGTGGCCGAGCGGTtgAAGGCACCGGTCTTGAAAACCGGCAATGGGCAACCATTCGTGGGTTCGAATCCCACCTCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig12.trna33 (2348706-2348630) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (2348672-2348670) Score: 94.16
HMM Sc=69.92 Sec struct Sc=24.24
* | * | * | * | * | * | * | *
Seq: GGGTCTGTAGCTCAGTCGGTtAGAGCAGGGGACTCATAATCCCTTGGtCGTTGGTTCGAGTCCAACCAGACCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna34 (2233075-2232983) Length: 93 bp
Type: Ser Anticodon: GCT at 35-37 (2233041-2233039) Score: 73.41
HMM Sc=43.52 Sec struct Sc=29.89
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGATGGCCGAGTGGTcgAAGGCGCTCCCCTGCTAAGGGAGTATAGGCTCAAAaAGCTTATCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>>.....<<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig12.trna35 (2144669-2144593) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (2144635-2144633) Score: 85.01
HMM Sc=60.51 Sec struct Sc=24.50
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTCtGGCAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig12.trna36 (2074832-2074756) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (2074798-2074796) Score: 84.29
HMM Sc=61.16 Sec struct Sc=23.13
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCTCAGCCtGGTAGAGTACTGCGTTCGGGACGCAGGAGtCGGAGGTTCGAATCCTCTCACCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna37 (1935737-1935662) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (1935704-1935702) Score: 85.92
HMM Sc=62.24 Sec struct Sc=23.68
* | * | * | * | * | * | * | *
Seq: TCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGtCCCAGGTTCGAGCCCTGGTCGGGGAGCCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig12.trna38 (1838220-1838145) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (1838187-1838185) Score: 86.46
HMM Sc=68.18 Sec struct Sc=18.28
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCAGCGGTTCGATCCCGCTTACCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna39 (1838086-1838011) Length: 76 bp
Type: Glu Anticodon: TTC at 35-37 (1838052-1838050) Score: 60.87
HMM Sc=31.07 Sec struct Sc=29.80
* | * | * | * | * | * | * | *
Seq: GTCCCCATCGTCTAGAGGCctAGGACATCACCCTTTCACGGTGAGTACGGGGGTTCGAATCCCCCTGGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig12.trna40 (1162761-1162686) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (1162728-1162726) Score: 88.64
HMM Sc=71.67 Sec struct Sc=16.97
* | * | * | * | * | * | * | *
Seq: GCCGGCATAGCTCAGTTGGTAGAGCAGCTGATTTGTAATCAGAAGGtCCCGAGTTCGAATCTTGGTGTCGGCACCA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig12.trna41 (1082485-1082394) Length: 92 bp
Type: Ser Anticodon: GGA at 35-37 (1082451-1082449) Score: 80.91
HMM Sc=53.26 Sec struct Sc=27.65
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGATGGCCGAGTGGTttAAGGTACACGCCTGGAAAGCGTGCGTACGGGTCAAACCGTACCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>......<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig12.trna42 (285189-285113) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (285155-285153) Score: 93.06
HMM Sc=68.31 Sec struct Sc=24.75
* | * | * | * | * | * | * | *
Seq: AGGCGCGTAGCTCAGCTGGTtAGAGCACCACCTTGACATGGTGGGGGtCGTTGGTTCGAGTCCAATCGCGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig12.trna43 (218980-218904) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (218946-218944) Score: 85.36
HMM Sc=57.58 Sec struct Sc=27.78
* | * | * | * | * | * | * | *
Seq: GCGCCCATAGCTCAGCTGGAtAGAGTACCGCCCTCCGAAGGCGGGGGtCACACGTTCGAATCGTGTTGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
SiteMap
Feedback
Life Sciences Division
ORNL
Disclaimer
Webmaster
![[space]](http://homer.ornl.gov/compbio/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}