Genome Channel Computational Biosciences
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[space] Gene Channel • Generation Microbial Gene Prediction System • Grail (Microbial Gene Prediction System Internet Link) • GrailEXP • Genome Analysis Pipeline • DomainParser • PROSPECT (PROtein Structure Prediction and Evaluation Computer Toolkit) [space]
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Simple Repetitives

>Contig12.1.start28716.end28868
aaacctgaaaccccgaaatccgaaaccccgaagcctgaagcttcaaaatc
tgaaaccccgaaatccgaagctcctaagcctgaaacttcaaaacccgaaa
cttcaaaacccgaaaccccaaagtccgaagcttcaaaatctaaaaagtga
taa

>Contig12.10.start2547389.end2547500
acctgcgccaagcgccggcgtccccgttgcagacgataagcgaaattggc
gagctccttgcccaccgtggtcggcgtggcagcctgcccgtgcgtgcgtg
caagcatgggca

>Contig12.3.start678363.end678470
aggcgccggtcccagctgttcccccggcgccccctgtcccagttgttcct
ccggccccacctgtcccggttgttcctccggcgccactcgtgccagctgt
tcccccgg

>Contig12.5.start1111293.end1111415
attttggaaaattaattatcaattgtaatagttagagataaaagagcagt
aaacagatttatgacaaatatttaaaaatgtaatagtaataagaagcgga
gaagttggtgaagatcactgaaa

>Contig12.9.start2413702.end2413848
catctaccatctccctgaggcaccgccgccaccgaagccacccccgcctc
caccgaaacccccaccgccaccgaagccgccgggaccgcccctgccaccc
catcctccataaccaccgaagccacccggccagccgcgcccccctct

>Contig12.8.start2348580.end2348600
gaaaaaaaaaaggagttacag

>Contig9.1.start12307.end12411
GAAGGATTCAATTCTTATATTTCCTTTTAAATTCATACCCTGATAGTCTT
ATTTATAGGTTTTTTGGCTTTATTTTGCTTGTTATTTATCGTTTCGTTTA
TAGTA

>Contig12.7.start1281038.end1281204
gcccgcccccgcgccccctgtcatgcctgcaccccggtcgccggcgctgc
cgccggccactgcacccggtccaaccgtgcccggaccggcaacgggacgg
gtacccggcttgctggctcctgccgcaccgggtccgaccatgccaacgcc
aacgacgccaccttccc

>Contig12.2.start179464.end179587
gccgctgccaataatgacgattggtggtgtgctcatgcttgagtttttgc
cctgttgacgttgctgctcgtactgcgatgtgttgctgaggctgctccgg
tttcgattcgcgctgcgttcaatg

>Contig12.4.start973892.end973992
gggcgcggactcaggggcgggtgaaacgggcggggcaggggagggagggg
gagctgccggaacttgcggaaccgcaggagaaggcgcgggggcgatattg
g

>Contig12.12.start3173455.end3173564
gtctcctccgagacagcgttaccgccgctgcccgccagcaacgcatccag
ccctctccccaatcctcttattttcattttcctttcgtccggcttcatat
cttctaggct

>Contig12.6.start1277522.end1277545
tatttattttattgcatttttttt

>Contig12.11.start3117060.end3117218
tttctctttgttcttcttccttgcgctccttttctttccgctccttctcg
gctttttccttccgttctttttccctctgctcctgttcctttttctcctg
cagttctttttccttacgctctttctccttacgctctttctccagttgca
ccttgtttt

Complex Repetitives

>Contig12.1.f.start874639.end874720.ACCN_M25496.1/P80TGY
gggttcccgagcggtcaaagggatcagactgtaaatctgacggctctgcc
ttcgaaggttcgaatccttccccctccaccag

>Contig12.2.f.start1574858.end1574893.ACCN_K02503.1/M10574.1/M25453.1/M30710.1/X01280.1/X01283.1/X61367.1/Z00027.1/Z50120.1/Z50121.1/Z50122.*
cgcagaatccggaaaaaatcgtacgctaaggttttg

>Contig12.3.f.start2338721.end2338967.ACCN_L20693.1
cgcccaagtccaacaacgtggccccgggaagcgcatcgaccagcagatcg
aggtcgctgccgtcccggtcggtgccatgcagcaccgaaccgaagacgcg
cgggttcgcggtgcggaagcggcctaccgcttcacgcactgcgcttcgct
tcatgtcaagcgcaacggacggtcgcatagcattcttccttatcgaaacg
cgttgagatgatagcaagaatagattttcaagaattattttcgagag

>Contig12.4.r.start60306.end60355.ACCN_BHU24159/BPHS1ADNA
cgaaggttgaaccggttaattccaatggctggccggcgaatatcggctga

>Contig12.5.r.start1609351.end1609386.ACCN_M25454.1/X02803.1/Z00027.1/AH002795.1/M10598.1/M10599.1/M24522.1/X01282.1/X01284.1/X01285.*
tcttcgcgcgcaatagccatgtacattcgcggcatg

>Contig12.6.r.start3028833.end3028908.ACCN_BHU24159/BPHS1ADNA
cctcaatgcggcctgctcggggctcaaggtgaacatcattctcaacatta
agaatcttttccagaaaatctccgtg

>Contig9.1.f.start10201.end10280.ACCN_INSIS407A/INSIS407AA
CTAGTAAAGTTCGTTTTTCGAGAGGAGAACGGACGTGAAGAAGCGATTTA
CGGATGAACAAATTATTGGATTTCTGAAGC

>Contig9.2.f.start10817.end10867.ACCN_INSIS407A/INSIS407AA
AGCAATTGGCATTGCCAAGCCAGCCCAACGAGGTATGGTCAATGGATTTC
A

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