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Intracellular trafficking and secretion

COG Name Group Contig Gene COG ID Score Evalue
Biopolymer transport protein U Contig12 NmulA1028 COG0848 106 7e-25
Biopolymer transport protein U Contig12 NmulA1029 COG0811 135 3e-33
Biopolymer transport protein U Contig12 NmulA1047 COG0848 128 2e-31
Biopolymer transport protein U Contig12 NmulA1048 COG0811 147 1e-36
Biopolymer transport protein U Contig12 NmulA1314 COG0811 43 2e-05
Biopolymer transport protein U Contig12 NmulA2300 COG0811 106 1e-24
Biopolymer transport protein U Contig12 NmulA2301 COG0848 81 2e-17
Biopolymer transport protein U Contig12 NmulA2569 COG0848 105 1e-24
Biopolymer transport protein U Contig12 NmulA2570 COG0811 117 2e-27
Biopolymer transport protein U Contig12 NmulA2716 COG0848 111 2e-26
Biopolymer transport protein U Contig12 NmulA2717 COG0811 187 4e-49
Competence protein ComGC U Contig12 NmulA1898 COG4537 40 8e-05
Competence protein ComGC U Contig12 NmulA2475 COG4537 37 7e-04
Competence protein ComGC U Contig12 NmulA2581 COG4537 40 5e-05
Competence protein ComGC U Contig12 NmulA2590 COG4537 38 4e-04
Flagellar biosynthesis/type III secretory pathway chaperone U Contig12 NmulA1316 COG3418 40 6e-05

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name Group Contig Gene COG ID Score Evalue
flagella assembly protein J U Contig12 NmulA1406 COG1955 42 3e-04
Flagellar biosynthesis chaperone U Contig12 NmulA1349 COG2882 71 4e-14
Flagellar biosynthesis pathway component FlhA U Contig12 NmulA1310 COG1298 850 0.0
Flagellar biosynthesis pathway component FlhB U Contig12 NmulA1309 COG1377 397 1.0e-112
Flagellar biosynthesis pathway component FlhB U Contig12 NmulA1343 COG1377 79 5e-17
Flagellar biosynthesis pathway component FliP U Contig12 NmulA1355 COG1338 287 5e-79
Flagellar biosynthesis pathway component FliQ U Contig12 NmulA1356 COG1987 82 5e-18
Flagellar biosynthesis pathway component FliR U Contig12 NmulA1357 COG1684 169 2e-43
Flagellar biosynthesis/type III secretory pathway ATPase U Contig12 NmulA0308 COG1157 200 2e-52
Flagellar biosynthesis/type III secretory pathway ATPase U Contig12 NmulA0310 COG1157 247 9e-67
Flagellar biosynthesis/type III secretory pathway ATPase U Contig12 NmulA0951 COG1157 35 0.006
Flagellar biosynthesis/type III secretory pathway ATPase U Contig12 NmulA1348 COG1157 588 1.0e-169
Flagellar biosynthesis/type III secretory pathway ATPase U Contig12 NmulA1487 COG1157 43 6e-05
Flagellar biosynthesis/type III secretory pathway ATPase U Contig12 NmulA1654 COG1157 223 2e-59
Flagellar biosynthesis/type III secretory pathway ATPase U Contig12 NmulA1661 COG1157 227 2e-60
Flagellar biosynthesis/type III secretory pathway ATPase U Contig12 NmulA2085 COG1157 111 7e-26
Flagellar biosynthesis/type III secretory pathway lipoprotein U Contig12 NmulA1345 COG1766 414 1.0e-117
Flagellar biosynthesis/type III secretory pathway protein U Contig12 NmulA1347 COG1317 96 2e-21
Flagellar hook-basal body protein U Contig12 NmulA1344 COG1677 74 3e-15
Flagellar motor switch/type III secretory pathway protein U Contig12 NmulA1353 COG1886 97 7e-22
Flagellin-specific chaperone FliS U Contig12 NmulA1340 COG1516 110 7e-26
Muramidase (flagellum-specific) U Contig12 NmulA1329 COG1705 149 3e-37
Predicted ATPase involved in biogenesis of flagella U Contig12 NmulA0019 COG2874 41 1e-04
Predicted ATPase involved in biogenesis of flagella U Contig12 NmulA1803 COG2874 47 3e-06
COG Name Group Contig Gene COG ID Score Evalue
Flp pilus assembly protein ATPase CpaE U Contig11 NmulC2788 COG4963 38 8e-04
Flp pilus assembly protein ATPase CpaE U Contig12 NmulA0244 COG4963 38 7e-04
Flp pilus assembly protein ATPase CpaE U Contig12 NmulA1312 COG4963 55 6e-09
Flp pilus assembly protein ATPase CpaE U Contig12 NmulA1966 COG4963 45 9e-06
Flp pilus assembly protein ATPase CpaE U Contig12 NmulA2355 COG4963 170 2e-43
Flp pilus assembly protein ATPase CpaE U Contig12 NmulA2768 COG4963 45 7e-06
Flp pilus assembly protein ATPase CpaE U Contig9 NmulD2816 COG4963 38 7e-04
Flp pilus assembly protein ATPase CpaF U Contig12 NmulA1903 COG4962 66 5e-12
Flp pilus assembly protein ATPase CpaF U Contig12 NmulA2354 COG4962 415 1.0e-117
Flp pilus assembly protein ATPase CpaF U Contig12 NmulA2588 COG4962 70 5e-13
Flp pilus assembly protein CpaB U Contig12 NmulA2361 COG3745 135 4e-33
Flp pilus assembly protein pilin Flp U Contig12 NmulA2363 COG3847 46 4e-07
Flp pilus assembly protein protease CpaA U Contig12 NmulA2131 COG4960 38 0.001
Flp pilus assembly protein protease CpaA U Contig12 NmulA2362 COG4960 51 6e-08
Flp pilus assembly protein secretin CpaC U Contig12 NmulA1902 COG4964 88 3e-18
Flp pilus assembly protein secretin CpaC U Contig12 NmulA2360 COG4964 283 2e-77
Flp pilus assembly protein secretin CpaC U Contig12 NmulA2583 COG4964 110 6e-25
Flp pilus assembly protein TadB U Contig12 NmulA2352 COG4965 58 7e-10
Flp pilus assembly protein TadB U Contig12 NmulA2353 COG4965 185 3e-48
Flp pilus assembly protein TadC U Contig12 NmulA2352 COG2064 83 3e-17
Flp pilus assembly protein TadC U Contig12 NmulA2353 COG2064 49 5e-07
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA0017 COG5010 37 0.002
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA0018 COG5010 35 0.001
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA0272 COG5010 53 1e-08
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA0376 COG5010 53 6e-08
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA0586 COG5010 44 3e-05
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA0911 COG5010 75 2e-14
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA1882 COG5010 41 2e-04
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA2351 COG5010 58 9e-10
Flp pilus assembly protein TadD contains TPR repeats U Contig12 NmulA2707 COG5010 42 7e-05
Flp pilus assembly protein TadG U Contig12 NmulA2356 COG4961 50 6e-08
Flp pilus assembly protein TadG U Contig12 NmulA2357 COG4961 52 4e-08
Flp pilus assembly protein TadG U Contig12 NmulA2358 COG4961 40 4e-04
Heme exporter protein D U Contig12 NmulA1211 COG3114 51 2e-08
Hemolysin activation/secretion protein U Contig12 NmulA0665 COG2831 104 2e-23
Hemolysin activation/secretion protein U Contig12 NmulA1797 COG2831 38 0.002
Hemolysin activation/secretion protein U Contig12 NmulA2576 COG2831 194 2e-50
Lipoprotein signal peptidase U Contig12 NmulA2655 COG0597 122 2e-29
Membrane protein implicated in regulation of membrane protease activity U Contig12 NmulA1039 COG1585 60 4e-10
Negative regulator of flagellin synthesis (anti-sigma28 factor) U Contig12 NmulA1317 COG2747 36 0.001
Outer membrane protein U Contig12 NmulA0690 COG1538 238 6e-64
Outer membrane protein U Contig12 NmulA0851 COG1538 259 4e-70
Outer membrane protein U Contig12 NmulA1111 COG1538 131 1e-31
Outer membrane protein U Contig12 NmulA1282 COG1538 166 4e-42
Outer membrane protein U Contig12 NmulA1408 COG1538 134 2e-32
Outer membrane protein U Contig12 NmulA1502 COG1538 227 2e-60
Outer membrane protein U Contig12 NmulA1640 COG1538 35 0.009
Outer membrane protein U Contig12 NmulA1641 COG1538 126 4e-30
Outer membrane protein U Contig12 NmulA1726 COG1538 184 2e-47
Outer membrane protein U Contig12 NmulA1840 COG1538 199 3e-52
Outer membrane protein U Contig12 NmulA2106 COG1538 142 4e-35
Outer membrane protein U Contig12 NmulA2283 COG1538 170 2e-43
Periplasmic component of the Tol biopolymer transport system U Contig12 NmulA2303 COG0823 42 1e-04
Periplasmic component of the Tol biopolymer transport system U Contig12 NmulA2714 COG0823 309 3e-85
Periplasmic serine protease (ClpP class) U Contig12 NmulA0057 COG0616 120 1e-28
Periplasmic serine protease (ClpP class) U Contig12 NmulA1039 COG0616 37 0.004
Periplasmic serine protease (ClpP class) U Contig12 NmulA1066 COG0616 217 1e-57
Periplasmic serine protease (ClpP class) U Contig12 NmulA2340 COG0616 37 0.001
P pilus assembly protein porin PapC U Contig11 NmulC2793 COG3188 38 0.003
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake U Contig12 NmulA0395 COG0758 330 2e-91
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake U Contig12 NmulA0567 COG0758 35 0.007
Preprotein translocase subunit Sec63 U Contig12 NmulA0892 COG5407 48 6e-07
Preprotein translocase subunit Sec63 U Contig12 NmulA1520 COG5407 55 5e-09
Preprotein translocase subunit Sec63 U Contig12 NmulA2238 COG5407 79 7e-16

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig12 NmulA0911 COG0653 38 0.002
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig12 NmulA0924 COG0653 522 1.0e-149
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig12 NmulA2485 COG0653 1096 0.0
Preprotein translocase subunit SecB U Contig12 NmulA1124 COG1952 166 9e-43
Preprotein translocase subunit SecD U Contig12 NmulA0043 COG0342 67 8e-12
Preprotein translocase subunit SecD U Contig12 NmulA0688 COG0342 70 6e-13
Preprotein translocase subunit SecD U Contig12 NmulA0691 COG0342 55 4e-08
Preprotein translocase subunit SecD U Contig12 NmulA0850 COG0342 60 6e-10
Preprotein translocase subunit SecD U Contig12 NmulA1113 COG0342 39 0.002
Preprotein translocase subunit SecD U Contig12 NmulA1727 COG0342 56 2e-08
Preprotein translocase subunit SecD U Contig12 NmulA1842 COG0342 44 6e-05
Preprotein translocase subunit SecD U Contig12 NmulA1970 COG0342 62 2e-10
Preprotein translocase subunit SecD U Contig12 NmulA2426 COG0342 87 2e-18
Preprotein translocase subunit SecD U Contig12 NmulA2427 COG0342 481 1.0e-137
Preprotein translocase subunit SecD U Contig12 NmulA2558 COG0342 53 8e-08
Preprotein translocase subunit SecE U Contig12 NmulA0753 COG0690 52 1e-08
Preprotein translocase subunit SecF U Contig12 NmulA0043 COG0341 41 6e-04
Preprotein translocase subunit SecF U Contig12 NmulA0688 COG0341 47 6e-06
Preprotein translocase subunit SecF U Contig12 NmulA0691 COG0341 41 3e-04
Preprotein translocase subunit SecF U Contig12 NmulA0850 COG0341 42 3e-04
Preprotein translocase subunit SecF U Contig12 NmulA1639 COG0341 38 0.003
Preprotein translocase subunit SecF U Contig12 NmulA1727 COG0341 51 6e-07
Preprotein translocase subunit SecF U Contig12 NmulA1970 COG0341 46 1e-05
Preprotein translocase subunit SecF U Contig12 NmulA2426 COG0341 300 1e-82
Preprotein translocase subunit SecF U Contig12 NmulA2427 COG0341 97 4e-21
Preprotein translocase subunit SecF U Contig12 NmulA2558 COG0341 46 1e-05
Preprotein translocase subunit SecG U Contig12 NmulA1090 COG1314 75 1e-15
Preprotein translocase subunit SecY U Contig12 NmulA0787 COG0201 461 1.0e-131
Preprotein translocase subunit YajC U Contig12 NmulA2428 COG1862 49 6e-08
Preprotein translocase subunit YidC U Contig12 NmulA2776 COG0706 256 2e-69
COG Name Group Contig Gene COG ID Score Evalue
Protease subunit of ATP-dependent Clp protease U Contig12 NmulA0057 COG0740 46 5e-06
Protease subunit of ATP-dependent Clp protease U Contig12 NmulA2340 COG0740 307 4e-85
Sec-independent protein secretion pathway components U Contig12 NmulA0809 COG1826 63 6e-12
Sec-independent protein secretion pathway components U Contig12 NmulA0810 COG1826 67 3e-13
Sec-independent protein secretion pathway component TatC U Contig12 NmulA0808 COG0805 221 3e-59
Signal peptidase I U Contig12 NmulA1752 COG0681 65 7e-12
Signal recognition particle GTPase U Contig11 NmulC2788 COG0552 34 0.007
Signal recognition particle GTPase U Contig11 NmulC2788 COG0541 36 0.002
Signal recognition particle GTPase U Contig12 NmulA1311 COG0552 89 8e-19
Signal recognition particle GTPase U Contig12 NmulA1311 COG0541 79 8e-16
Signal recognition particle GTPase U Contig12 NmulA2134 COG0552 208 7e-55
Signal recognition particle GTPase U Contig12 NmulA2134 COG0541 585 1.0e-168
Signal recognition particle GTPase U Contig12 NmulA2738 COG0552 370 1.0e-104
Signal recognition particle GTPase U Contig12 NmulA2738 COG0541 233 2e-62
Tfp pilus assembly protein ATPase PilM U Contig12 NmulA0320 COG4972 38 0.001
Tfp pilus assembly protein ATPase PilM U Contig12 NmulA2489 COG4972 69 7e-13
Tfp pilus assembly protein ATPase PilU U Contig12 NmulA1903 COG5008 105 7e-24
Tfp pilus assembly protein ATPase PilU U Contig12 NmulA2354 COG5008 70 4e-13
Tfp pilus assembly protein ATPase PilU U Contig12 NmulA2588 COG5008 105 1e-23
Tfp pilus assembly protein FimT U Contig12 NmulA1895 COG4970 36 0.002
Tfp pilus assembly protein FimT U Contig12 NmulA1896 COG4970 33 0.010
Tfp pilus assembly protein FimT U Contig12 NmulA1897 COG4970 43 1e-05
Tfp pilus assembly protein FimT U Contig12 NmulA1898 COG4970 45 3e-06
Tfp pilus assembly protein FimT U Contig12 NmulA2475 COG4970 35 0.002
Tfp pilus assembly protein FimT U Contig12 NmulA2581 COG4970 45 3e-06
Tfp pilus assembly protein FimT U Contig12 NmulA2582 COG4970 41 6e-05
Tfp pilus assembly protein FimT U Contig12 NmulA2590 COG4970 41 4e-05
Tfp pilus assembly protein FimV U Contig12 NmulA1915 COG3170 140 1e-34
Tfp pilus assembly protein major pilin PilA U Contig12 NmulA1898 COG4969 40 1e-04
Tfp pilus assembly protein major pilin PilA U Contig12 NmulA2475 COG4969 54 6e-09
Tfp pilus assembly protein major pilin PilA U Contig12 NmulA2581 COG4969 45 2e-06
Tfp pilus assembly protein major pilin PilA U Contig12 NmulA2582 COG4969 44 6e-06
Tfp pilus assembly protein major pilin PilA U Contig12 NmulA2590 COG4969 41 3e-05
Tfp pilus assembly protein PilE U Contig12 NmulA1895 COG4968 36 0.002
Tfp pilus assembly protein PilE U Contig12 NmulA1898 COG4968 55 3e-09
Tfp pilus assembly protein PilE U Contig12 NmulA2475 COG4968 48 5e-07
Tfp pilus assembly protein PilE U Contig12 NmulA2581 COG4968 58 2e-10
Tfp pilus assembly protein PilE U Contig12 NmulA2582 COG4968 50 9e-08
Tfp pilus assembly protein PilE U Contig12 NmulA2590 COG4968 50 1e-07
Tfp pilus assembly protein PilF U Contig12 NmulA0017 COG3063 46 5e-06
Tfp pilus assembly protein PilF U Contig12 NmulA0272 COG3063 42 3e-05
Tfp pilus assembly protein PilF U Contig12 NmulA0330 COG3063 43 4e-05
Tfp pilus assembly protein PilF U Contig12 NmulA0376 COG3063 70 8e-13
Tfp pilus assembly protein PilF U Contig12 NmulA0586 COG3063 45 2e-05
Tfp pilus assembly protein PilF U Contig12 NmulA0911 COG3063 78 4e-15
Tfp pilus assembly protein PilF U Contig12 NmulA1206 COG3063 44 2e-05
Tfp pilus assembly protein PilF U Contig12 NmulA1583 COG3063 37 0.002
Tfp pilus assembly protein PilF U Contig12 NmulA1735 COG3063 41 4e-04
Tfp pilus assembly protein PilF U Contig12 NmulA1882 COG3063 38 0.001
Tfp pilus assembly protein PilF U Contig12 NmulA1975 COG3063 43 2e-05
Tfp pilus assembly protein PilF U Contig12 NmulA2351 COG3063 63 5e-11
Tfp pilus assembly protein PilF U Contig12 NmulA2583 COG3063 38 0.002
Tfp pilus assembly protein PilF U Contig12 NmulA2707 COG3063 51 1e-07
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig12 NmulA1903 COG2805 172 4e-44
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig12 NmulA2354 COG2805 57 3e-09
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig12 NmulA2588 COG2805 160 4e-40
Tfp pilus assembly protein PilV U Contig12 NmulA1896 COG4967 41 3e-05
Tfp pilus assembly protein PilV U Contig12 NmulA1897 COG4967 36 0.001
Tfp pilus assembly protein PilV U Contig12 NmulA1898 COG4967 38 3e-04
Type III secretory pathway component EscR U Contig12 NmulA1355 COG4790 160 8e-41
Type III secretory pathway component EscS U Contig12 NmulA1356 COG4794 53 4e-09
Type III secretory pathway component EscT U Contig12 NmulA1357 COG4791 95 4e-21
Type III secretory pathway component EscU U Contig12 NmulA1309 COG4792 209 2e-55
Type III secretory pathway component EscU U Contig12 NmulA1343 COG4792 48 2e-07
Type III secretory pathway component EscV U Contig12 NmulA1310 COG4789 488 1.0e-139
Type III secretory pathway lipoprotein EscJ U Contig12 NmulA1345 COG4669 63 6e-11
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig12 NmulA1541 COG2804 36 0.008
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig12 NmulA1903 COG2804 553 1.0e-159
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig12 NmulA2354 COG2804 72 1e-13
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig12 NmulA2588 COG2804 478 1.0e-136
Type II secretory pathway component ExeA (predicted ATPase) U Contig12 NmulA0215 COG3267 128 9e-31
Type II secretory pathway component ExeA (predicted ATPase) U Contig12 NmulA1903 COG3267 36 0.008
Type II secretory pathway component ExeA (predicted ATPase) U Contig12 NmulA2525 COG3267 145 5e-36
Type II secretory pathway component HofQ U Contig12 NmulA1902 COG4796 120 3e-28
Type II secretory pathway component HofQ U Contig12 NmulA2360 COG4796 96 5e-21
Type II secretory pathway component HofQ U Contig12 NmulA2583 COG4796 187 3e-48
Type II secretory pathway component PulD U Contig12 NmulA1902 COG1450 307 2e-84
Type II secretory pathway component PulD U Contig12 NmulA2360 COG1450 140 2e-34
Type II secretory pathway component PulD U Contig12 NmulA2583 COG1450 145 9e-36
Type II secretory pathway component PulF U Contig12 NmulA1904 COG1459 332 3e-92
Type II secretory pathway component PulF U Contig12 NmulA2589 COG1459 287 7e-79
Type II secretory pathway component PulJ U Contig12 NmulA1895 COG4795 52 3e-08
Type II secretory pathway component PulJ U Contig12 NmulA1896 COG4795 33 0.006
Type II secretory pathway component PulJ U Contig12 NmulA1897 COG4795 34 0.005
Type II secretory pathway component PulJ U Contig12 NmulA2581 COG4795 39 1e-04
Type II secretory pathway component PulK U Contig12 NmulA1894 COG3156 170 9e-44
Type II secretory pathway component PulL U Contig12 NmulA1893 COG3297 64 1e-11
Type II secretory pathway component PulM U Contig12 NmulA1892 COG3149 58 3e-10
Type II secretory pathway prepilin signal peptidase PulO and related peptidase U Contig12 NmulA2131 COG1989 147 1e-36
Type II secretory pathway prepilin signal peptidase PulO and related peptidase U Contig12 NmulA2362 COG1989 40 1e-04
Type II secretory pathway pseudopilin PulG U Contig12 NmulA1895 COG2165 38 5e-04
Type II secretory pathway pseudopilin PulG U Contig12 NmulA1896 COG2165 48 2e-07
Type II secretory pathway pseudopilin PulG U Contig12 NmulA1897 COG2165 43 1e-05
Type II secretory pathway pseudopilin PulG U Contig12 NmulA1898 COG2165 94 4e-21
Type II secretory pathway pseudopilin PulG U Contig12 NmulA2475 COG2165 49 2e-07
Type II secretory pathway pseudopilin PulG U Contig12 NmulA2580 COG2165 49 5e-07
Type II secretory pathway pseudopilin PulG U Contig12 NmulA2581 COG2165 57 7e-10
Type II secretory pathway pseudopilin PulG U Contig12 NmulA2582 COG2165 62 2e-11
Type II secretory pathway pseudopilin PulG U Contig12 NmulA2590 COG2165 89 2e-19
Type IV secretory pathway protease TraF U Contig12 NmulA1752 COG4959 37 0.002
Type IV secretory pathway TrbL protein U Contig12 NmulA0215 COG3846 37 0.004
Type IV secretory pathway VirB10 protein U Contig12 NmulA0476 COG2948 35 0.007
Type IV secretory pathway VirB10 protein U Contig12 NmulA1049 COG2948 39 3e-04
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig12 NmulA1903 COG0630 77 3e-15
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig12 NmulA2354 COG0630 214 1e-56
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig12 NmulA2588 COG0630 95 1e-20
Type IV secretory pathway VirD4 protein U Contig11 NmulC2793 COG3505 222 5e-59

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