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DNA Replication, Recombination and Repair

COG Name Group Contig Gene COG ID Score Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig12 NmulA1213 COG0122 116 2e-27
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig12 NmulA2704 COG0122 57 1e-09
3-methyladenine DNA glycosylase L Contig12 NmulA1264 COG2094 213 6e-57
5'-3' exonuclease (including N-terminal domain of PolI) L Contig12 NmulA0568 COG0258 273 5e-74
Adenine-specific DNA methylase containing a Zn-ribbon L Contig12 NmulA2226 COG1743 50 4e-07
Adenine specific DNA methylase Mod L Contig12 NmulA2179 COG2189 69 1e-12
A/G-specific DNA glycosylase L Contig12 NmulA0078 COG1194 360 1.0e-100
A/G-specific DNA glycosylase L Contig12 NmulA1007 COG1194 39 4e-04
A/G-specific DNA glycosylase L Contig12 NmulA2704 COG1194 101 4e-23
ATPase involved in DNA repair L Contig12 NmulA0085 COG0419 38 8e-04
ATPase involved in DNA repair L Contig12 NmulA0120 COG0497 37 0.002
ATPase involved in DNA repair L Contig12 NmulA0120 COG0419 44 2e-05
ATPase involved in DNA repair L Contig12 NmulA0204 COG0419 187 3e-48
ATPase involved in DNA repair L Contig12 NmulA0367 COG0419 36 0.003
ATPase involved in DNA repair L Contig12 NmulA0503 COG0419 43 4e-05
ATPase involved in DNA repair L Contig12 NmulA0645 COG0497 51 6e-07
ATPase involved in DNA repair L Contig12 NmulA0645 COG0419 68 5e-12
ATPase involved in DNA repair L Contig12 NmulA0730 COG0419 51 2e-07
ATPase involved in DNA repair L Contig12 NmulA0883 COG0419 37 0.001
ATPase involved in DNA repair L Contig12 NmulA0889 COG0419 45 9e-06
ATPase involved in DNA repair L Contig12 NmulA0895 COG0419 50 1e-07
ATPase involved in DNA repair L Contig12 NmulA0951 COG0419 51 9e-08
ATPase involved in DNA repair L Contig12 NmulA0982 COG0419 40 3e-04
ATPase involved in DNA repair L Contig12 NmulA1088 COG0419 38 6e-04
ATPase involved in DNA repair L Contig12 NmulA1120 COG0419 38 0.001
ATPase involved in DNA repair L Contig12 NmulA1174 COG0419 54 4e-08
ATPase involved in DNA repair L Contig12 NmulA1217 COG0419 41 8e-05
ATPase involved in DNA repair L Contig12 NmulA1280 COG0419 50 5e-07
ATPase involved in DNA repair L Contig12 NmulA1421 COG0419 42 1e-04
ATPase involved in DNA repair L Contig12 NmulA1487 COG0419 39 0.001
ATPase involved in DNA repair L Contig12 NmulA1504 COG0419 59 3e-10
ATPase involved in DNA repair L Contig12 NmulA1611 COG0419 45 6e-06
ATPase involved in DNA repair L Contig12 NmulA1702 COG0419 57 4e-09
ATPase involved in DNA repair L Contig12 NmulA1740 COG0497 37 0.003
ATPase involved in DNA repair L Contig12 NmulA1740 COG0419 48 2e-06
ATPase involved in DNA repair L Contig12 NmulA1811 COG0419 42 1e-04
ATPase involved in DNA repair L Contig12 NmulA1823 COG0419 37 0.004
ATPase involved in DNA repair L Contig12 NmulA1972 COG0419 47 1e-06
ATPase involved in DNA repair L Contig12 NmulA1982 COG0419 48 7e-07
ATPase involved in DNA repair L Contig12 NmulA2200 COG0419 41 2e-04
ATPase involved in DNA repair L Contig12 NmulA2229 COG0419 50 8e-07
ATPase involved in DNA repair L Contig12 NmulA2254 COG0419 40 7e-04
ATPase involved in DNA repair L Contig12 NmulA2331 COG0419 38 0.002
ATPase involved in DNA repair L Contig12 NmulA2421 COG0497 521 1.0e-149
ATPase involved in DNA repair L Contig12 NmulA2421 COG0419 51 3e-07
ATPase involved in DNA repair L Contig12 NmulA2508 COG0419 40 1e-04
ATPase involved in DNA repair L Contig12 NmulA2700 COG0419 44 4e-05
ATPase involved in DNA repair L Contig12 NmulA2715 COG0419 47 2e-06
ATPase involved in DNA repair L Contig12 NmulA2739 COG0419 47 1e-06
ATPase involved in DNA repair L Contig12 NmulA2744 COG0419 35 0.008
ATPase involved in DNA repair L Contig12 NmulA2749 COG0419 45 6e-06
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA0179 COG2256 552 1.0e-158
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA0483 COG2256 52 1e-07
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA0684 COG2256 38 0.001
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA1541 COG2256 43 1e-04
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA1798 COG2256 56 9e-09
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA1858 COG2256 98 2e-21
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA2097 COG2256 46 1e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA2248 COG2256 51 2e-07
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA2338 COG2256 47 5e-06
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA2339 COG2256 44 3e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA2350 COG2256 39 7e-04
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA2546 COG2256 37 0.003
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig12 NmulA2719 COG2256 85 1e-17
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig12 NmulA0563 COG1074 183 4e-47
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig12 NmulA0723 COG1074 289 7e-79
ATP-dependent nuclease subunit B L Contig12 NmulA0500 COG3857 37 0.002
ATP-dependent nuclease subunit B L Contig12 NmulA0722 COG3857 61 4e-10
Bacterial nucleoid DNA-binding protein L Contig12 NmulA0493 COG0776 110 2e-26
Bacterial nucleoid DNA-binding protein L Contig12 NmulA2068 COG0776 108 8e-26
Bacterial nucleoid DNA-binding protein L Contig12 NmulA2337 COG0776 102 6e-24

BASAL REPLICATION MACHINERY

COG Name Group Contig Gene COG ID Score Evalue
ATPase involved in DNA replication L Contig12 NmulA1386 COG0470 59 8e-10
ATPase involved in DNA replication L Contig12 NmulA1858 COG0470 47 3e-06
ATPase involved in DNA replication initiation L Contig12 NmulA0001 COG0593 433 1.0e-122
ATPase involved in DNA replication initiation L Contig12 NmulA0179 COG0593 46 4e-06
ATPase involved in DNA replication initiation L Contig12 NmulA0215 COG0593 40 6e-04
ATPase involved in DNA replication initiation L Contig12 NmulA0483 COG0593 43 1e-04
ATPase involved in DNA replication initiation L Contig12 NmulA1798 COG0593 38 0.003
ATPase involved in DNA replication initiation L Contig12 NmulA1858 COG0593 36 0.007
ATPase involved in DNA replication initiation L Contig12 NmulA2616 COG0593 145 2e-36
ATPase involved in DNA replication initiation L Contig12 NmulA2719 COG0593 43 3e-05
ATP-dependent DNA ligase L Contig12 NmulA1177 COG1793 282 7e-77
DNA polymerase elongation subunit (family B) L Contig12 NmulA2217 COG0417 47 1e-06
DNA polymerase I - 3'-5' exonuclease and polymerase domains L Contig12 NmulA0568 COG0749 771 0.0
DNA primase L Contig12 NmulA2058 COG0358 437 1.0e-123
DNA replication protein L Contig12 NmulA0001 COG1484 51 2e-07
DNA replication protein L Contig12 NmulA1161 COG1484 35 0.009
DNA replication protein L Contig12 NmulA2616 COG1484 34 0.009
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig12 NmulA0647 COG0272 889 0.0
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig12 NmulA2222 COG0272 34 0.002
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig12 NmulA0639 COG1198 83 8e-17
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig12 NmulA0884 COG1198 53 5e-08
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig12 NmulA1361 COG1198 54 4e-08
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig12 NmulA2327 COG1198 739 0.0
Replicative DNA helicase L Contig12 NmulA1803 COG0305 49 1e-06
Replicative DNA helicase L Contig12 NmulA1947 COG0305 546 1.0e-157
Ribonuclease HI L Contig12 NmulA1619 COG0328 180 4e-47
Ribonuclease HII L Contig12 NmulA0668 COG0164 220 8e-59
Ribonuclease HIII L Contig12 NmulA0668 COG1039 52 4e-08
Single-stranded DNA-binding protein L Contig12 NmulA2227 COG0629 141 3e-35
Topoisomerase IA L Contig12 NmulA0396 COG0550 464 1.0e-131
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit L Contig12 NmulA2189 COG0188 1056 0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit L Contig12 NmulA0003 COG0187 865 0.0
COG Name Group Contig Gene COG ID Score Evalue
Cdc6-related protein AAA superfamily ATPase L Contig12 NmulA0179 COG1474 41 2e-04
Cdc6-related protein AAA superfamily ATPase L Contig12 NmulA0483 COG1474 43 9e-05
Cdc6-related protein AAA superfamily ATPase L Contig12 NmulA0684 COG1474 36 0.004
Cdc6-related protein AAA superfamily ATPase L Contig12 NmulA1798 COG1474 37 0.005
Cdc6-related protein AAA superfamily ATPase L Contig12 NmulA2339 COG1474 35 0.008
Cdc6-related protein AAA superfamily ATPase L Contig12 NmulA2350 COG1474 38 0.001
Cdc6-related protein AAA superfamily ATPase L Contig12 NmulA2525 COG1474 45 8e-06
DNA-damage-inducible protein J L Contig12 NmulA0983 COG3077 46 6e-07
DNA-damage-inducible protein J L Contig12 NmulA2034 COG3077 71 2e-14
DNA mismatch repair enzyme (predicted ATPase) L Contig12 NmulA1109 COG0323 38 0.003
DNA mismatch repair enzyme (predicted ATPase) L Contig12 NmulA1144 COG0323 620 1.0e-179
DNA modification methylase L Contig12 NmulA2179 COG0863 60 7e-10
DNA or RNA helicase of superfamily II L Contig12 NmulA0639 COG1061 64 7e-11
DNA or RNA helicase of superfamily II L Contig12 NmulA0884 COG1061 57 3e-09
DNA or RNA helicase of superfamily II L Contig12 NmulA1361 COG1061 60 7e-10
DNA or RNA helicase of superfamily II L Contig12 NmulA1799 COG1061 74 3e-14
DNA or RNA helicase of superfamily II L Contig12 NmulA2178 COG1061 69 1e-12
DNA or RNA helicase of superfamily II L Contig12 NmulA2304 COG1061 77 3e-15
DNA or RNA helicase of superfamily II L Contig12 NmulA2327 COG1061 44 6e-05
DNA or RNA helicase of superfamily II L Contig12 NmulA2657 COG1061 71 2e-13

DNA POLYMERASE III SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
DNA polymerase III alpha subunit L Contig12 NmulA2314 COG0587 55 8e-09
DNA polymerase III alpha subunit L Contig12 NmulA2599 COG0587 994 0.0
DNA polymerase III alpha subunit L Contig12 NmulA2731 COG0587 1252 0.0
DNA polymerase III alpha subunit (gram-positive type) L Contig12 NmulA1618 COG2176 108 4e-25
DNA polymerase III alpha subunit (gram-positive type) L Contig12 NmulA2002 COG2176 136 4e-33
DNA polymerase III alpha subunit (gram-positive type) L Contig12 NmulA2222 COG2176 35 0.001
DNA polymerase III alpha subunit (gram-positive type) L Contig12 NmulA2314 COG2176 51 1e-07
DNA polymerase III alpha subunit (gram-positive type) L Contig12 NmulA2599 COG2176 63 9e-11
DNA polymerase III alpha subunit (gram-positive type) L Contig12 NmulA2731 COG2176 182 1e-46
DNA polymerase III chi subunit L Contig12 NmulA0745 COG2927 113 7e-27
DNA polymerase III delta subunit L Contig12 NmulA0513 COG1466 201 5e-53
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L Contig12 NmulA0714 COG0847 36 0.002
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L Contig12 NmulA1618 COG0847 166 2e-42
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L Contig12 NmulA2002 COG0847 134 9e-33
DNA polymerase III gamma/tau subunits L Contig12 NmulA0179 COG2812 90 3e-19
DNA polymerase III gamma/tau subunits L Contig12 NmulA0215 COG2812 37 0.004
DNA polymerase III gamma/tau subunits L Contig12 NmulA1386 COG2812 106 3e-24
DNA polymerase III gamma/tau subunits L Contig12 NmulA1858 COG2812 442 1.0e-125
DNA polymerase III gamma/tau subunits L Contig12 NmulA2719 COG2812 49 4e-07
DNA polymerase sliding clamp subunit (PCNA homolog) L Contig12 NmulA0002 COG0592 312 3e-86
COG Name Group Contig Gene COG ID Score Evalue
DNA polymerase IV (family X) L Contig12 NmulA0901 COG1796 301 9e-83
DNA repair exonuclease L Contig12 NmulA0203 COG0420 154 1e-38
DNA repair exonuclease L Contig12 NmulA1131 COG0420 35 0.006
DNA repair photolyase L Contig12 NmulA1617 COG1533 284 8e-78
DNA repair photolyase L Contig12 NmulA1979 COG1533 40 4e-04
DNA repair protein L Contig12 NmulA2138 COG2003 279 1e-76
DNA topoisomerase VI subunit B L Contig12 NmulA1144 COG1389 36 0.006
DNA topoisomerase VI subunit B L Contig12 NmulA1490 COG1389 36 0.009
DNA topoisomerase VI subunit B L Contig12 NmulA1492 COG1389 37 0.005
DNA topoisomerase VI subunit B L Contig12 NmulA2207 COG1389 38 0.002
DNA topoisomerase VI subunit B L Contig12 NmulA2410 COG1389 36 0.005
DNA uptake protein and related DNA-binding protein L Contig12 NmulA1585 COG1555 56 1e-08
DNA uptake protein and related DNA-binding protein L Contig12 NmulA1771 COG1555 66 5e-13
DNA uptake protein and related DNA-binding protein L Contig12 NmulA2222 COG1555 84 3e-18
ERCC4-like helicase L Contig12 NmulA0639 COG1111 46 1e-05
ERCC4-like helicase L Contig12 NmulA0884 COG1111 50 6e-07
ERCC4-like helicase L Contig12 NmulA1361 COG1111 52 2e-07
ERCC4-like helicase L Contig12 NmulA1799 COG1111 60 6e-10
ERCC4-like helicase L Contig12 NmulA2304 COG1111 46 8e-06
ERCC4-like helicase L Contig12 NmulA2657 COG1111 74 3e-14
ERCC4-type nuclease L Contig12 NmulA0647 COG1948 39 0.001
ERCC4-type nuclease L Contig12 NmulA1271 COG1948 46 7e-06
Excinuclease ATPase subunit L Contig12 NmulA0085 COG0178 59 3e-10
Excinuclease ATPase subunit L Contig12 NmulA0120 COG0178 36 0.005
Excinuclease ATPase subunit L Contig12 NmulA0367 COG0178 51 7e-08
Excinuclease ATPase subunit L Contig12 NmulA0503 COG0178 54 1e-08
Excinuclease ATPase subunit L Contig12 NmulA0682 COG0178 49 8e-07
Excinuclease ATPase subunit L Contig12 NmulA0730 COG0178 38 9e-04
Excinuclease ATPase subunit L Contig12 NmulA0883 COG0178 39 5e-04
Excinuclease ATPase subunit L Contig12 NmulA0889 COG0178 42 1e-04
Excinuclease ATPase subunit L Contig12 NmulA0895 COG0178 42 4e-05
Excinuclease ATPase subunit L Contig12 NmulA0951 COG0178 45 5e-06
Excinuclease ATPase subunit L Contig12 NmulA0982 COG0178 40 3e-04
Excinuclease ATPase subunit L Contig12 NmulA1088 COG0178 47 1e-06
Excinuclease ATPase subunit L Contig12 NmulA1174 COG0178 51 2e-07
Excinuclease ATPase subunit L Contig12 NmulA1217 COG0178 42 2e-05
Excinuclease ATPase subunit L Contig12 NmulA1231 COG0178 53 2e-08
Excinuclease ATPase subunit L Contig12 NmulA1280 COG0178 47 4e-06
Excinuclease ATPase subunit L Contig12 NmulA1421 COG0178 49 1e-06
Excinuclease ATPase subunit L Contig12 NmulA1487 COG0178 58 2e-09
Excinuclease ATPase subunit L Contig12 NmulA1504 COG0178 47 1e-06
Excinuclease ATPase subunit L Contig12 NmulA1611 COG0178 52 6e-08
Excinuclease ATPase subunit L Contig12 NmulA1740 COG0178 56 7e-09
Excinuclease ATPase subunit L Contig12 NmulA1972 COG0178 47 1e-06
Excinuclease ATPase subunit L Contig12 NmulA1982 COG0178 54 2e-08
Excinuclease ATPase subunit L Contig12 NmulA2229 COG0178 1538 0.0
Excinuclease ATPase subunit L Contig12 NmulA2254 COG0178 52 2e-07
Excinuclease ATPase subunit L Contig12 NmulA2331 COG0178 52 2e-07
Excinuclease ATPase subunit L Contig12 NmulA2508 COG0178 49 4e-07
Excinuclease ATPase subunit L Contig12 NmulA2700 COG0178 40 6e-04
Excinuclease ATPase subunit L Contig12 NmulA2739 COG0178 48 4e-07
Excinuclease ATPase subunit L Contig12 NmulA2744 COG0178 37 0.002
Excinuclease ATPase subunit L Contig12 NmulA2749 COG0178 61 1e-10
Exonuclease III L Contig12 NmulA0224 COG0708 279 1e-76
Exonuclease III L Contig12 NmulA0606 COG0708 39 5e-04
Exonuclease III L Contig12 NmulA1524 COG0708 40 1e-04
Exonuclease III L Contig12 NmulA2418 COG0708 319 1e-88
Exonuclease VII large subunit L Contig12 NmulA1030 COG1570 467 1.0e-133
Exonuclease VII small subunit L Contig12 NmulA0234 COG1722 52 7e-09
Factor for inversion stimulation Fis transcriptional activator L Contig12 NmulA0132 COG2901 84 2e-18
Factor for inversion stimulation Fis transcriptional activator L Contig12 NmulA2128 COG2901 41 1e-04
Formamidopyrimidine-DNA glycosylase L Contig12 NmulA0582 COG0266 331 4e-92
Helicase subunit of the DNA excision repair complex L Contig12 NmulA0639 COG0556 71 5e-13
Helicase subunit of the DNA excision repair complex L Contig12 NmulA1271 COG0556 44 3e-05
Helicase subunit of the DNA excision repair complex L Contig12 NmulA1361 COG0556 1067 0.0
Helicase subunit of the DNA excision repair complex L Contig12 NmulA1799 COG0556 45 1e-05
Helicase subunit of the DNA excision repair complex L Contig12 NmulA2327 COG0556 48 3e-06
Helicase subunit of the DNA excision repair complex L Contig12 NmulA2657 COG0556 39 0.001
Holliday junction resolvasome DNA-binding subunit L Contig12 NmulA2720 COG0632 208 2e-55
Holliday junction resolvasome endonuclease subunit L Contig12 NmulA2721 COG0817 146 5e-37
Holliday junction resolvasome helicase subunit L Contig12 NmulA0001 COG2255 36 0.009
Holliday junction resolvasome helicase subunit L Contig12 NmulA0179 COG2255 72 7e-14
Holliday junction resolvasome helicase subunit L Contig12 NmulA0483 COG2255 43 8e-05
Holliday junction resolvasome helicase subunit L Contig12 NmulA1798 COG2255 48 2e-06
Holliday junction resolvasome helicase subunit L Contig12 NmulA1858 COG2255 50 4e-07
Holliday junction resolvasome helicase subunit L Contig12 NmulA2097 COG2255 36 0.009
Holliday junction resolvasome helicase subunit L Contig12 NmulA2248 COG2255 46 8e-06
Holliday junction resolvasome helicase subunit L Contig12 NmulA2338 COG2255 41 4e-04
Holliday junction resolvasome helicase subunit L Contig12 NmulA2339 COG2255 42 6e-05
Holliday junction resolvasome helicase subunit L Contig12 NmulA2719 COG2255 529 1.0e-151
HrpA-like helicase L Contig12 NmulA0884 COG1643 36 0.008
HrpA-like helicase L Contig12 NmulA1393 COG1643 671 0.0
HrpA-like helicase L Contig12 NmulA1799 COG1643 48 2e-06
HrpA-like helicase L Contig12 NmulA2657 COG1643 43 7e-05
Inactivated superfamily I helicase L Contig12 NmulA0722 COG3893 52 2e-07
Integrase L Contig10 NmulB2807 COG0582 51 1e-07
Integrase L Contig12 NmulA0064 COG0582 46 3e-06
Integrase L Contig12 NmulA0748 COG0582 67 2e-12
Integrase L Contig12 NmulA0922 COG0582 54 2e-08
Integrase L Contig12 NmulA2012 COG0582 46 5e-06
Integrase L Contig12 NmulA2184 COG0582 57 3e-09
Integrase L Contig12 NmulA2544 COG0582 64 1e-11
Methylated DNA-protein cysteine methyltransferase L Contig12 NmulA0747 COG0350 114 3e-27
Mg-dependent DNase L Contig12 NmulA1381 COG0084 307 4e-85
Micrococcal nuclease (thermonuclease) homologs L Contig12 NmulA0156 COG1525 91 6e-20
Micrococcal nuclease (thermonuclease) homologs L Contig12 NmulA0952 COG1525 86 1e-18
Micrococcal nuclease (thermonuclease) homologs L Contig12 NmulA1302 COG1525 46 3e-07
Micrococcal nuclease (thermonuclease) homologs L Contig12 NmulA2003 COG1525 95 5e-21
Mismatch repair ATPase (MutS family) L Contig12 NmulA0024 COG1193 45 3e-06
Mismatch repair ATPase (MutS family) L Contig12 NmulA0670 COG1193 125 2e-29
Mismatch repair ATPase (MutS family) L Contig12 NmulA0670 COG0249 913 0.0
Mismatch repair ATPase (MutS family) L Contig12 NmulA2282 COG1193 111 1e-25
Mismatch repair ATPase (MutS family) L Contig12 NmulA2282 COG0249 168 7e-43
N6-adenine-specific methylase L Contig12 NmulA0392 COG0742 39 6e-04
N6-adenine-specific methylase L Contig12 NmulA1854 COG0742 41 7e-05
N6-adenine-specific methylase L Contig12 NmulA2216 COG0742 48 1e-06
N6-adenine-specific methylase L Contig12 NmulA2640 COG0742 46 4e-06
N6-adenine-specific methylase L Contig12 NmulA2735 COG0742 172 1e-44
N6-adenine-specific methylase L Contig12 NmulA2751 COG0742 42 6e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig12 NmulA0604 COG2816 39 2e-04
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig12 NmulA1007 COG2816 45 7e-06
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig12 NmulA2233 COG2816 39 2e-04
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig12 NmulA2244 COG2816 41 5e-05
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig12 NmulA2533 COG2816 68 4e-13
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig12 NmulA0449 COG0494 54 8e-09
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig12 NmulA0604 COG0494 53 7e-09
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig12 NmulA1007 COG0494 53 3e-08
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig12 NmulA2233 COG0494 50 1e-07
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig12 NmulA2244 COG0494 48 3e-07
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig12 NmulA2533 COG0494 39 2e-04
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig12 NmulA2646 COG0494 40 1e-04
Nuclease subunit of the excinuclease complex L Contig12 NmulA0395 COG0322 37 0.002
Nuclease subunit of the excinuclease complex L Contig12 NmulA0647 COG0322 38 0.003
Nuclease subunit of the excinuclease complex L Contig12 NmulA1271 COG0322 635 0.0
Nuclease subunit of the excinuclease complex L Contig12 NmulA1361 COG0322 44 4e-05
Nuclease subunit of the excinuclease complex L Contig12 NmulA2002 COG0322 101 1e-22
Nucleosome binding factor SPN SPT16 subunit L Contig12 NmulA2632 COG5406 42 3e-05
Nucleotidyltransferase/DNA polymerase involved in DNA repair L Contig12 NmulA0949 COG0389 266 2e-72
Nucleotidyltransferase/DNA polymerase involved in DNA repair L Contig12 NmulA2598 COG0389 44 2e-05
Plasmid replication initiator protein L Contig11 NmulC2789 COG5534 75 7e-15
Plasmid replication initiator protein L Contig9 NmulD2817 COG5534 71 2e-13
Predicted 3'-5' exonuclease related to the exonuclease domain of PolB L Contig12 NmulA2217 COG3298 76 2e-15
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig12 NmulA0106 COG1241 55 5e-09
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig12 NmulA0684 COG1241 36 0.004
Predicted ATP-dependent endonuclease of the OLD family L Contig12 NmulA0120 COG3593 65 9e-12
Predicted ATP-dependent endonuclease of the OLD family L Contig12 NmulA0143 COG3593 63 5e-11
Predicted ATP-dependent endonuclease of the OLD family L Contig12 NmulA0645 COG3593 38 0.005
Predicted ATP-dependent endonuclease of the OLD family L Contig12 NmulA2421 COG3593 40 5e-04
Predicted DNA modification methylase L Contig12 NmulA1032 COG1041 46 4e-06
Predicted DNA modification methylase L Contig12 NmulA2216 COG1041 48 1e-06
Predicted DNA modification methylase L Contig12 NmulA2226 COG1041 35 0.009
Predicted DNA modification methylase L Contig12 NmulA2269 COG1041 37 0.002
Predicted DNA modification methylase L Contig12 NmulA2735 COG1041 36 0.001
Predicted DNA modification methylase L Contig12 NmulA2751 COG1041 37 0.002
Predicted EndoIII-related endonuclease L Contig12 NmulA0078 COG0177 104 8e-24
Predicted EndoIII-related endonuclease L Contig12 NmulA1213 COG0177 47 2e-06
Predicted EndoIII-related endonuclease L Contig12 NmulA2704 COG0177 300 5e-83
Predicted endonuclease distantly related to Holliday junction resolvase L Contig12 NmulA0195 COG0792 113 5e-27
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) L Contig12 NmulA2479 COG0816 137 4e-34
Predicted eukaryotic-type DNA primase L Contig12 NmulA1177 COG3285 309 4e-85
Predicted methylated DNA-protein cysteine methyltransferase L Contig12 NmulA0747 COG3695 37 7e-04
Predicted N6-adenine-specific DNA methylase L Contig12 NmulA1032 COG0116 365 1.0e-102
Predicted N6-adenine-specific DNA methylase L Contig12 NmulA1854 COG0116 41 2e-04
Predicted N6-adenine-specific DNA methylase L Contig12 NmulA2226 COG0116 38 0.002
Predicted NTP pyrophosphohydrolase L Contig12 NmulA0449 COG4119 34 0.007
Predicted NTP pyrophosphohydrolase L Contig12 NmulA2233 COG4119 37 8e-04
Predicted NTP pyrophosphohydrolase L Contig12 NmulA2646 COG4119 167 3e-43
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake L Contig12 NmulA0395 COG0758 330 2e-91
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake L Contig12 NmulA0567 COG0758 35 0.007
Predicted site-specific integrase-resolvase L Contig9 NmulD2813 COG2452 35 0.004
Primosomal replication protein N L Contig12 NmulA1950 COG2965 65 9e-13
Rad3-related DNA helicase L Contig12 NmulA1412 COG1199 466 1.0e-132
Rad3-related DNA helicase L Contig12 NmulA1799 COG1199 43 6e-05
Rad3-related DNA helicase L Contig12 NmulA2304 COG1199 37 0.003
RecA-family ATPase L Contig12 NmulA1803 COG3598 51 1e-07
RecA/RadA recombinase L Contig12 NmulA0019 COG0468 320 1e-88
RecA/RadA recombinase L Contig12 NmulA1803 COG0468 63 3e-11
RecB family exonuclease L Contig12 NmulA0722 COG2887 50 8e-07
RecG-like helicase L Contig12 NmulA0639 COG1200 372 1.0e-104
RecG-like helicase L Contig12 NmulA0884 COG1200 805 0.0
RecG-like helicase L Contig12 NmulA1361 COG1200 46 9e-06
RecG-like helicase L Contig12 NmulA1799 COG1200 51 3e-07
RecG-like helicase L Contig12 NmulA2304 COG1200 60 4e-10
RecG-like helicase L Contig12 NmulA2327 COG1200 59 1e-09
RecG-like helicase L Contig12 NmulA2657 COG1200 39 6e-04
RecJ-like exonuclease contains DnaJ-type Zn finger domain L Contig12 NmulA2238 COG1107 46 5e-06
Recombinational DNA repair ATPase (RecF pathway) L Contig12 NmulA0120 COG1195 47 3e-06
Recombinational DNA repair ATPase (RecF pathway) L Contig12 NmulA0143 COG1195 39 7e-04
Recombinational DNA repair ATPase (RecF pathway) L Contig12 NmulA0645 COG1195 42 3e-04
Recombinational DNA repair ATPase (RecF pathway) L Contig12 NmulA2421 COG1195 49 1e-06
Recombinational DNA repair protein (RecF pathway) L Contig12 NmulA1757 COG1381 160 8e-41
Recombinational DNA repair protein (RecF pathway) L Contig12 NmulA1856 COG0353 276 7e-76
Retron-type reverse transcriptase L Contig12 NmulA0934 COG3344 47 2e-06
Reverse gyrase L Contig12 NmulA0396 COG1110 106 7e-24
Reverse gyrase L Contig12 NmulA0639 COG1110 42 3e-04
Reverse gyrase L Contig12 NmulA0884 COG1110 37 0.005
Reverse gyrase L Contig12 NmulA1361 COG1110 40 6e-04
Reverse gyrase L Contig12 NmulA1799 COG1110 41 1e-04
Reverse gyrase L Contig12 NmulA2304 COG1110 50 6e-07
Reverse gyrase L Contig12 NmulA2657 COG1110 60 6e-10
Single-stranded DNA-specific exonuclease L Contig12 NmulA0640 COG0608 375 1.0e-105
Single-stranded DNA-specific exonuclease L Contig12 NmulA0913 COG0608 44 1e-05
Site-specific DNA methylase L Contig12 NmulA2735 COG0270 37 7e-04
Site-specific recombinase DNA invertase Pin homologs L Contig11 NmulC2795 COG1961 45 1e-06
Site-specific recombinase DNA invertase Pin homologs L Contig12 NmulA0107 COG1961 67 3e-12
Site-specific recombinase DNA invertase Pin homologs L Contig12 NmulA0986 COG1961 71 2e-14
Site-specific recombinase DNA invertase Pin homologs L Contig12 NmulA2023 COG1961 50 4e-08
Site-specific recombinase DNA invertase Pin homologs L Contig9 NmulD2813 COG1961 130 6e-32
Site-specific recombinase XerC L Contig10 NmulB2807 COG4973 118 5e-28
Site-specific recombinase XerC L Contig12 NmulA0748 COG4973 229 1e-61
Site-specific recombinase XerC L Contig12 NmulA1382 COG4973 51 1e-07
Site-specific recombinase XerC L Contig12 NmulA2012 COG4973 120 2e-28
Site-specific recombinase XerC L Contig12 NmulA2184 COG4973 40 4e-04
Site-specific recombinase XerC L Contig12 NmulA2544 COG4973 328 3e-91
Site-specific recombinase XerD L Contig10 NmulB2807 COG4974 150 1e-37
Site-specific recombinase XerD L Contig12 NmulA0064 COG4974 46 6e-06
Site-specific recombinase XerD L Contig12 NmulA0123 COG4974 43 5e-06
Site-specific recombinase XerD L Contig12 NmulA0748 COG4974 383 1.0e-107
Site-specific recombinase XerD L Contig12 NmulA0922 COG4974 37 0.002
Site-specific recombinase XerD L Contig12 NmulA1382 COG4974 57 2e-09
Site-specific recombinase XerD L Contig12 NmulA2012 COG4974 137 9e-34
Site-specific recombinase XerD L Contig12 NmulA2184 COG4974 37 0.002
Site-specific recombinase XerD L Contig12 NmulA2544 COG4974 271 5e-74
Superfamily I DNA and RNA helicase L Contig12 NmulA0563 COG0210 572 1.0e-164
Superfamily I DNA and RNA helicase L Contig12 NmulA0723 COG0210 141 3e-34
Superfamily II DNA and RNA helicase L Contig12 NmulA0639 COG0513 73 9e-14
Superfamily II DNA and RNA helicase L Contig12 NmulA0884 COG0513 64 4e-11
Superfamily II DNA and RNA helicase L Contig12 NmulA0924 COG0513 43 6e-05
Superfamily II DNA and RNA helicase L Contig12 NmulA1361 COG0513 68 2e-12
Superfamily II DNA and RNA helicase L Contig12 NmulA1412 COG0513 36 0.007
Superfamily II DNA and RNA helicase L Contig12 NmulA1799 COG0513 426 1.0e-120
Superfamily II DNA and RNA helicase L Contig12 NmulA2304 COG0513 123 3e-29
Superfamily II DNA and RNA helicase L Contig12 NmulA2327 COG0513 40 8e-04
Superfamily II DNA and RNA helicase L Contig12 NmulA2657 COG0513 423 1.0e-119
Superfamily II DNA helicase L Contig12 NmulA0639 COG0514 47 7e-06
Superfamily II DNA helicase L Contig12 NmulA0884 COG0514 67 4e-12
Superfamily II DNA helicase L Contig12 NmulA1361 COG0514 52 2e-07
Superfamily II DNA helicase L Contig12 NmulA1799 COG0514 115 1e-26
Superfamily II DNA helicase L Contig12 NmulA2304 COG0514 437 1.0e-123
Superfamily II DNA helicase L Contig12 NmulA2327 COG0514 42 1e-04
Superfamily II DNA helicase L Contig12 NmulA2657 COG0514 104 1e-23
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig12 NmulA0639 COG4098 70 1e-12
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig12 NmulA0884 COG4098 52 1e-07
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig12 NmulA1361 COG4098 55 2e-08
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig12 NmulA2304 COG4098 38 0.002
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig12 NmulA2327 COG4098 75 2e-14
Superfamily II DNA/RNA helicase SNF2 family L Contig12 NmulA1799 COG0553 52 8e-08
Superfamily II DNA/RNA helicase SNF2 family L Contig12 NmulA2657 COG0553 42 1e-04
Superfamily II helicase and inactivated derivatives L Contig12 NmulA2180 COG5519 120 1e-28
Superfamily II helicase and inactivated derivatives L Contig12 NmulA2181 COG5519 132 3e-32
Superfamily II RNA helicase L Contig12 NmulA0639 COG4581 40 0.001
Superfamily II RNA helicase L Contig12 NmulA0884 COG4581 42 2e-04
Superfamily II RNA helicase L Contig12 NmulA1799 COG4581 41 2e-04
Superfamily II RNA helicase L Contig12 NmulA2657 COG4581 36 0.008
Topoisomerase IB L Contig12 NmulA0039 COG3569 288 6e-79
Transcription-repair coupling factor (superfamily II helicase) L Contig12 NmulA0639 COG1197 1345 0.0
Transcription-repair coupling factor (superfamily II helicase) L Contig12 NmulA0884 COG1197 329 4e-91
Transcription-repair coupling factor (superfamily II helicase) L Contig12 NmulA1361 COG1197 136 4e-33
Transcription-repair coupling factor (superfamily II helicase) L Contig12 NmulA1799 COG1197 40 4e-04
Transcription-repair coupling factor (superfamily II helicase) L Contig12 NmulA2304 COG1197 48 2e-06
Transcription-repair coupling factor (superfamily II helicase) L Contig12 NmulA2327 COG1197 60 6e-10
Transposase and inactivated derivatives L Contig11 NmulC2783 COG2801 60 2e-10
Transposase and inactivated derivatives L Contig12 NmulA0046 COG3293 49 9e-08
Transposase and inactivated derivatives L Contig12 NmulA0047 COG3293 66 1e-12
Transposase and inactivated derivatives L Contig12 NmulA0054 COG2963 46 8e-07
Transposase and inactivated derivatives L Contig12 NmulA0055 COG2801 66 4e-12
Transposase and inactivated derivatives L Contig12 NmulA0109 COG2801 60 2e-10
Transposase and inactivated derivatives L Contig12 NmulA0138 COG2801 71 8e-14
Transposase and inactivated derivatives L Contig12 NmulA0168 COG2801 66 4e-12
Transposase and inactivated derivatives L Contig12 NmulA0169 COG2963 46 1e-06
Transposase and inactivated derivatives L Contig12 NmulA0419 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA0420 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA0545 COG2801 67 1e-12
Transposase and inactivated derivatives L Contig12 NmulA0546 COG2963 39 5e-05
Transposase and inactivated derivatives L Contig12 NmulA0597 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA0598 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA0621 COG3293 66 1e-12
Transposase and inactivated derivatives L Contig12 NmulA0623 COG3293 32 0.008
Transposase and inactivated derivatives L Contig12 NmulA0830 COG3293 66 1e-12
Transposase and inactivated derivatives L Contig12 NmulA0836 COG3293 42 7e-06
Transposase and inactivated derivatives L Contig12 NmulA0837 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA0838 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA1248 COG2801 35 0.006
Transposase and inactivated derivatives L Contig12 NmulA1295 COG2801 67 2e-12
Transposase and inactivated derivatives L Contig12 NmulA1296 COG2963 39 5e-05
Transposase and inactivated derivatives L Contig12 NmulA1298 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA1299 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA1301 COG2801 71 7e-14
Transposase and inactivated derivatives L Contig12 NmulA1319 COG3293 49 1e-07
Transposase and inactivated derivatives L Contig12 NmulA1320 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA1428 COG2801 35 0.006
Transposase and inactivated derivatives L Contig12 NmulA1431 COG2963 39 5e-05
Transposase and inactivated derivatives L Contig12 NmulA1432 COG2801 64 1e-11
Transposase and inactivated derivatives L Contig12 NmulA1434 COG2801 35 0.006
Transposase and inactivated derivatives L Contig12 NmulA1441 COG2801 42 7e-06
Transposase and inactivated derivatives L Contig12 NmulA1484 COG2801 71 8e-14
Transposase and inactivated derivatives L Contig12 NmulA1525 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA1526 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA1569 COG2801 43 4e-06
Transposase and inactivated derivatives L Contig12 NmulA1642 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA1643 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA1645 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA1646 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA1687 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA1688 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA1693 COG2801 63 9e-12
Transposase and inactivated derivatives L Contig12 NmulA1696 COG2801 43 4e-06
Transposase and inactivated derivatives L Contig12 NmulA1725 COG3316 37 3e-04
Transposase and inactivated derivatives L Contig12 NmulA1735 COG3464 38 0.003
Transposase and inactivated derivatives L Contig12 NmulA2009 COG2801 43 3e-06
Transposase and inactivated derivatives L Contig12 NmulA2018 COG3293 50 7e-08
Transposase and inactivated derivatives L Contig12 NmulA2019 COG3293 66 1e-12
Transposase and inactivated derivatives L Contig12 NmulA2021 COG2801 60 2e-10
Transposase and inactivated derivatives L Contig12 NmulA2023 COG3677 33 0.006
Transposase and inactivated derivatives L Contig12 NmulA2024 COG2801 65 5e-12
Transposase and inactivated derivatives L Contig12 NmulA2025 COG2963 45 2e-06
Transposase and inactivated derivatives L Contig12 NmulA2027 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA2028 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA2054 COG2801 42 7e-06
Transposase and inactivated derivatives L Contig12 NmulA2096 COG2801 35 0.006
Transposase and inactivated derivatives L Contig12 NmulA2098 COG2801 35 0.006
Transposase and inactivated derivatives L Contig12 NmulA2173 COG2963 46 8e-07
Transposase and inactivated derivatives L Contig12 NmulA2174 COG2801 66 4e-12
Transposase and inactivated derivatives L Contig12 NmulA2208 COG2801 35 0.006
Transposase and inactivated derivatives L Contig12 NmulA2291 COG3293 44 7e-06
Transposase and inactivated derivatives L Contig12 NmulA2347 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA2348 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA2405 COG2801 70 2e-13
Transposase and inactivated derivatives L Contig12 NmulA2406 COG2963 47 7e-07
Transposase and inactivated derivatives L Contig12 NmulA2458 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA2459 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA2606 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA2607 COG3293 59 9e-11
Transposase and inactivated derivatives L Contig12 NmulA2649 COG3293 50 8e-08
Transposase and inactivated derivatives L Contig12 NmulA2650 COG3293 66 1e-12
Transposase and inactivated derivatives L Contig12 NmulA2771 COG3293 50 4e-08
Transposase and inactivated derivatives L Contig12 NmulA2772 COG3293 41 2e-05
Transposase and inactivated derivatives L Contig9 NmulD2821 COG2801 71 8e-14
Transposase and inactivated derivatives IS30 family L Contig11 NmulC2783 COG2826 42 5e-05
Transposase and inactivated derivatives IS30 family L Contig12 NmulA0109 COG2826 42 5e-05
Transposase and inactivated derivatives IS30 family L Contig12 NmulA1692 COG2826 276 2e-75
Transposase and inactivated derivatives IS30 family L Contig12 NmulA1836 COG2826 273 1e-74
Transposase and inactivated derivatives IS30 family L Contig12 NmulA2021 COG2826 42 5e-05
Uncharacterized protein related to Endonuclease III L Contig12 NmulA0078 COG2231 61 1e-10
Uncharacterized protein related to Endonuclease III L Contig12 NmulA1213 COG2231 37 0.002
Uncharacterized protein related to Endonuclease III L Contig12 NmulA2704 COG2231 90 1e-19
Uracil-DNA glycosylase L Contig12 NmulA1269 COG1573 102 2e-23
Uracil-DNA glycosylase L Contig12 NmulA1286 COG1573 148 3e-37
Uracil-DNA glycosylase L Contig12 NmulA2121 COG1573 165 3e-42

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