Transcription

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
AraC-type DNA-binding domain-containing protein	K	Contig12	NmulA0916	COG2207	76	4e-15

BASAL TRANSCRIPTION FACTORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase subunit M/Transcription elongation factor TFIIS	K	Contig12	NmulA1910	COG1594	37	0.002
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig12	NmulA1531	COG1813	41	4e-05
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig9	NmulD2824	COG1813	33	0.004
Transcription antiterminator	K	Contig12	NmulA0754	COG0250	207	4e-55
Transcription elongation factor	K	Contig12	NmulA0480	COG0782	152	1e-38
Transcription elongation factor	K	Contig12	NmulA0938	COG0782	86	1e-18
Transcription elongation factor	K	Contig12	NmulA1865	COG0195	193	2e-50
Transcription elongation factor	K	Contig12	NmulA1871	COG0782	137	5e-34
Transcription elongation factor	K	Contig12	NmulA2553	COG0195	36	0.008
Transcription termination factor	K	Contig12	NmulA0012	COG0781	122	1e-29
Transcription termination factor	K	Contig12	NmulA0308	COG1158	41	2e-04
Transcription termination factor	K	Contig12	NmulA0310	COG1158	55	1e-08
Transcription termination factor	K	Contig12	NmulA1348	COG1158	88	2e-18
Transcription termination factor	K	Contig12	NmulA1350	COG1158	36	0.007
Transcription termination factor	K	Contig12	NmulA1654	COG1158	53	6e-08
Transcription termination factor	K	Contig12	NmulA1661	COG1158	50	4e-07
Transcription termination factor	K	Contig12	NmulA2085	COG1158	708	0.0

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Biotin operon repressor	K	Contig12	NmulA2082	COG1654	51	1e-07
Cold shock protein	K	Contig12	NmulA0840	COG1278	94	2e-21
Cold shock protein	K	Contig12	NmulA0905	COG1278	35	0.003
Cold shock protein	K	Contig12	NmulA1135	COG1278	96	5e-22
Cold shock protein	K	Contig12	NmulA1291	COG1278	105	4e-25
Cold shock protein	K	Contig12	NmulA2246	COG1278	109	6e-26
DNA-binding HTH domain-containing protein	K	Contig12	NmulA0165	COG2771	58	1e-10
DNA-binding HTH domain-containing protein	K	Contig12	NmulA0238	COG2771	65	8e-12
DNA-binding HTH domain-containing protein	K	Contig12	NmulA0728	COG2771	51	8e-08
DNA-binding HTH domain-containing protein	K	Contig12	NmulA1235	COG2771	51	6e-08
DNA-binding HTH domain-containing protein	K	Contig12	NmulA1336	COG2771	47	9e-07
DNA-binding HTH domain-containing protein	K	Contig12	NmulA2265	COG2771	43	1e-05
DNA-binding HTH domain-containing protein	K	Contig12	NmulA2417	COG2771	67	1e-12
DNA-binding HTH domain-containing protein	K	Contig12	NmulA2579	COG2771	63	3e-11
DNA-binding HTH domain-containing protein	K	Contig12	NmulA2674	COG2771	51	7e-08
DNA-binding winged-HTH domains	K	Contig12	NmulA0706	COG3710	65	4e-12
DNA-binding winged-HTH domains	K	Contig12	NmulA1246	COG3710	107	4e-24
DNA-binding winged-HTH domains	K	Contig12	NmulA2231	COG3710	67	1e-12

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit	K	Contig12	NmulA0792	COG0202	355	3e-99
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	Contig12	NmulA0759	COG0085	748	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	Contig12	NmulA0760	COG0086	883	0.0
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig12	NmulA0498	COG0568	253	1e-68
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig12	NmulA1313	COG0568	82	3e-17
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig12	NmulA2057	COG0568	332	6e-92
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)	K	Contig12	NmulA2741	COG0568	224	6e-60
DNA-directed RNA polymerase specialized sigma subunit	K	Contig12	NmulA0498	COG1191	111	6e-26
DNA-directed RNA polymerase specialized sigma subunit	K	Contig12	NmulA1051	COG1191	46	2e-06
DNA-directed RNA polymerase specialized sigma subunit	K	Contig12	NmulA1313	COG1191	197	7e-52
DNA-directed RNA polymerase specialized sigma subunit	K	Contig12	NmulA1746	COG1191	36	0.002
DNA-directed RNA polymerase specialized sigma subunit	K	Contig12	NmulA1839	COG1191	43	1e-05
DNA-directed RNA polymerase specialized sigma subunit	K	Contig12	NmulA2057	COG1191	108	2e-24
DNA-directed RNA polymerase specialized sigma subunit	K	Contig12	NmulA2741	COG1191	108	5e-25
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig12	NmulA1051	COG1595	81	6e-17
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig12	NmulA1313	COG1595	44	1e-05
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig12	NmulA1746	COG1595	133	9e-33
DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog	K	Contig12	NmulA1839	COG1595	98	4e-22
DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog	K	Contig12	NmulA0084	COG1508	441	1.0e-125
DNA-directed RNA polymerase subunit E'	K	Contig12	NmulA1585	COG1095	42	2e-04
DNA-directed RNA polymerase subunit E'	K	Contig12	NmulA1953	COG1095	62	1e-10
DNA-directed RNA polymerase subunit E'	K	Contig12	NmulA2069	COG1095	41	3e-04
DNA-directed RNA polymerase subunit E'	K	Contig12	NmulA2553	COG1095	44	5e-05
DNA-directed RNA polymerase subunit K/omega	K	Contig12	NmulA0051	COG1758	66	3e-13

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA helicase TIP49 TBP-interacting protein	K	Contig12	NmulA0483	COG1224	53	8e-08
DNA helicase TIP49 TBP-interacting protein	K	Contig12	NmulA1798	COG1224	51	3e-07
DNA helicase TIP49 TBP-interacting protein	K	Contig12	NmulA1858	COG1224	37	0.003
DNA helicase TIP49 TBP-interacting protein	K	Contig12	NmulA2339	COG1224	37	0.003
DNA helicase TIP49 TBP-interacting protein	K	Contig12	NmulA2719	COG1224	41	2e-04
DNA or RNA helicase of superfamily II	K	Contig12	NmulA0639	COG1061	64	7e-11
DNA or RNA helicase of superfamily II	K	Contig12	NmulA0884	COG1061	57	3e-09
DNA or RNA helicase of superfamily II	K	Contig12	NmulA1361	COG1061	60	7e-10
DNA or RNA helicase of superfamily II	K	Contig12	NmulA1799	COG1061	74	3e-14
DNA or RNA helicase of superfamily II	K	Contig12	NmulA2178	COG1061	69	1e-12
DNA or RNA helicase of superfamily II	K	Contig12	NmulA2304	COG1061	77	3e-15
DNA or RNA helicase of superfamily II	K	Contig12	NmulA2327	COG1061	44	6e-05
DNA or RNA helicase of superfamily II	K	Contig12	NmulA2657	COG1061	71	2e-13
dsRNA-specific ribonuclease	K	Contig12	NmulA1753	COG0571	242	1e-65
Exoribonuclease II	K	Contig12	NmulA0536	COG4776	99	1e-21
Exoribonuclease II	K	Contig12	NmulA1953	COG4776	257	2e-69
Exoribonuclease R	K	Contig12	NmulA0536	COG0557	164	1e-41
Exoribonuclease R	K	Contig12	NmulA1585	COG0557	50	8e-07
Exoribonuclease R	K	Contig12	NmulA1953	COG0557	737	0.0
Exoribonuclease R	K	Contig12	NmulA2069	COG0557	42	1e-04
Exoribonuclease R	K	Contig12	NmulA2553	COG0557	39	0.001
Factor for inversion stimulation Fis transcriptional activator	K	Contig12	NmulA0132	COG2901	84	2e-18
Factor for inversion stimulation Fis transcriptional activator	K	Contig12	NmulA2128	COG2901	41	1e-04
Glycerol-3-phosphate responsive antiterminator (mRNA-binding)	K	Contig12	NmulA0814	COG1954	35	0.005
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig12	NmulA0050	COG0317	828	0.0
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig12	NmulA1551	COG0317	43	7e-05
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig12	NmulA2505	COG0317	779	0.0
Histone acetyltransferase	K	Contig12	NmulA0068	COG1243	41	2e-04
IkappaB kinase complex IKAP component	K	Contig12	NmulA1121	COG5290	35	0.007
Negative regulator of flagellin synthesis (anti-sigma28 factor)	K	Contig12	NmulA1317	COG2747	36	0.001
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig12	NmulA1244	COG0378	242	1e-65
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig12	NmulA1666	COG0378	205	2e-54
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase	K	Contig12	NmulA2525	COG0378	40	2e-04
Nucleosome binding factor SPN SPT16 subunit	K	Contig12	NmulA2632	COG5406	42	3e-05
Phenylacetic acid-responsive transcriptional repressor	K	Contig12	NmulA1683	COG3327	34	0.003
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig12	NmulA2715	COG1293	39	5e-04
Predicted RNA polymerase sigma factor containing a TPR repeat domain	K	Contig12	NmulA1746	COG4941	52	2e-08
Predicted transcriptional regulator BolA superfamily protein	K	Contig12	NmulA2113	COG5007	52	8e-09
Predicted transcriptional regulator BolA superfamily protein	K	Contig12	NmulA2742	COG5007	79	5e-17
Predicted transcriptional regulator protein containing CBS domains	K	Contig12	NmulA1169	COG4109	39	1e-04
Predicted transcriptional regulator protein containing CBS domains	K	Contig12	NmulA1198	COG4109	45	2e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig12	NmulA1200	COG4109	47	3e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig12	NmulA2132	COG4109	38	0.002
Predicted transcriptional regulator protein containing CBS domains	K	Contig12	NmulA2698	COG4109	36	0.003
Predicted transcriptional regulator protein	K	Contig12	NmulA1683	COG4742	38	1e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA1683	COG4189	39	8e-05
Rad3-related DNA helicase	K	Contig12	NmulA1412	COG1199	466	1.0e-132
Rad3-related DNA helicase	K	Contig12	NmulA1799	COG1199	43	6e-05
Rad3-related DNA helicase	K	Contig12	NmulA2304	COG1199	37	0.003
RecG-like helicase	K	Contig12	NmulA0639	COG1200	372	1.0e-104
RecG-like helicase	K	Contig12	NmulA0884	COG1200	805	0.0
RecG-like helicase	K	Contig12	NmulA1361	COG1200	46	9e-06
RecG-like helicase	K	Contig12	NmulA1799	COG1200	51	3e-07
RecG-like helicase	K	Contig12	NmulA2304	COG1200	60	4e-10
RecG-like helicase	K	Contig12	NmulA2327	COG1200	59	1e-09
RecG-like helicase	K	Contig12	NmulA2657	COG1200	39	6e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0007	COG4567	213	8e-57
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0163	COG4567	45	3e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0333	COG4567	45	2e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0334	COG4567	41	9e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0335	COG4567	58	4e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0389	COG4567	64	3e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0706	COG4567	58	6e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0823	COG4567	37	5e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA0829	COG4567	39	2e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1161	COG4567	78	9e-16
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1191	COG4567	43	6e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1235	COG4567	47	1e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1287	COG4567	66	6e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1288	COG4567	38	2e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1336	COG4567	56	3e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1490	COG4567	40	8e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1491	COG4567	40	8e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1492	COG4567	55	1e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1555	COG4567	43	4e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1556	COG4567	40	0.001
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1860	COG4567	48	7e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA1861	COG4567	40	2e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2207	COG4567	53	7e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2231	COG4567	48	5e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2297	COG4567	37	0.006
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2298	COG4567	46	1e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2385	COG4567	42	1e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2411	COG4567	37	5e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2671	COG4567	71	1e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2693	COG4567	41	1e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig12	NmulA2694	COG4567	42	2e-04
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0007	COG3437	69	2e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0163	COG3437	70	6e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0333	COG3437	73	7e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0334	COG3437	54	2e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0335	COG3437	103	9e-23
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0389	COG3437	75	1e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0543	COG3437	35	0.003
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0706	COG3437	80	2e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0728	COG3437	47	9e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0823	COG3437	49	2e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0826	COG3437	40	3e-05
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA0829	COG3437	81	4e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1138	COG3437	70	7e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1161	COG3437	83	5e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1191	COG3437	88	2e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1235	COG3437	52	4e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1287	COG3437	71	2e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1288	COG3437	63	8e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1336	COG3437	61	6e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1490	COG3437	86	9e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1491	COG3437	78	2e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1492	COG3437	81	3e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1555	COG3437	62	7e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1556	COG3437	67	8e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1663	COG3437	194	7e-51
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1860	COG3437	83	3e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA1861	COG3437	88	8e-19
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2037	COG3437	83	1e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2207	COG3437	75	2e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2231	COG3437	99	1e-22
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2297	COG3437	49	2e-06
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2298	COG3437	50	6e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2385	COG3437	71	4e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2411	COG3437	43	7e-06
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2671	COG3437	48	1e-06
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2693	COG3437	75	9e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig12	NmulA2694	COG3437	76	9e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0007	COG2197	72	3e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0163	COG2197	77	5e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0165	COG2197	65	1e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0238	COG2197	70	1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0333	COG2197	64	5e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0334	COG2197	93	2e-20
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0335	COG2197	75	3e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0389	COG2197	74	2e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0543	COG2197	40	1e-04
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0706	COG2197	73	2e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0728	COG2197	172	2e-44
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0823	COG2197	54	5e-09
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0826	COG2197	43	4e-06
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA0829	COG2197	68	3e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1138	COG2197	64	4e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1161	COG2197	76	6e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1191	COG2197	68	2e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1235	COG2197	178	3e-46
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1279	COG2197	64	7e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1287	COG2197	84	2e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1288	COG2197	68	2e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1336	COG2197	186	1e-48
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1490	COG2197	64	4e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1491	COG2197	74	4e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1492	COG2197	63	7e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1555	COG2197	60	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1556	COG2197	49	2e-06
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1860	COG2197	66	4e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA1861	COG2197	76	3e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2037	COG2197	63	1e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2207	COG2197	55	3e-08
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2231	COG2197	84	9e-18
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2265	COG2197	46	2e-06
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2297	COG2197	65	4e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2298	COG2197	73	8e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2355	COG2197	36	0.007
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2385	COG2197	78	2e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2411	COG2197	38	3e-04
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2417	COG2197	70	1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2579	COG2197	75	6e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2671	COG2197	72	1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2674	COG2197	111	4e-26
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2675	COG2197	52	2e-08
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2693	COG2197	63	2e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig12	NmulA2694	COG2197	70	1e-12
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0007	COG4565	53	2e-08
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0163	COG4565	53	9e-09
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0333	COG4565	36	0.009
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0334	COG4565	71	2e-13
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0335	COG4565	61	5e-10
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0389	COG4565	79	8e-16
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0542	COG4565	38	0.001
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0706	COG4565	69	4e-13
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0728	COG4565	59	2e-10
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0823	COG4565	50	9e-08
Response regulator of citrate/malate metabolism	K	Contig12	NmulA0829	COG4565	47	5e-07
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1138	COG4565	49	2e-06
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1161	COG4565	60	4e-10
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1191	COG4565	55	2e-08
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1235	COG4565	47	1e-06
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1287	COG4565	68	1e-12
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1288	COG4565	46	9e-07
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1336	COG4565	73	2e-14
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1490	COG4565	46	1e-05
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1491	COG4565	49	1e-06
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1492	COG4565	54	3e-08
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1555	COG4565	63	6e-11
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1556	COG4565	44	5e-05
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1860	COG4565	45	8e-06
Response regulator of citrate/malate metabolism	K	Contig12	NmulA1861	COG4565	60	2e-10
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2037	COG4565	48	4e-07
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2207	COG4565	46	2e-05
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2231	COG4565	70	1e-13
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2297	COG4565	58	5e-09
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2298	COG4565	69	9e-14
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2355	COG4565	38	0.001
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2385	COG4565	52	2e-08
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2671	COG4565	48	2e-06
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2693	COG4565	49	6e-07
Response regulator of citrate/malate metabolism	K	Contig12	NmulA2694	COG4565	57	7e-09
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0007	COG3279	48	5e-07
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0163	COG3279	45	3e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0333	COG3279	49	2e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0334	COG3279	70	3e-13
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0335	COG3279	52	2e-07
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0389	COG3279	63	6e-11
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0706	COG3279	59	3e-10
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0728	COG3279	48	3e-07
Response regulator of the LytR/AlgR family	K	Contig12	NmulA0829	COG3279	40	1e-04
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1138	COG3279	40	6e-04
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1161	COG3279	52	1e-07
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1191	COG3279	47	6e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1235	COG3279	60	1e-10
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1287	COG3279	58	2e-09
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1288	COG3279	43	6e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1336	COG3279	72	3e-14
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1490	COG3279	50	1e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1491	COG3279	47	5e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1492	COG3279	40	5e-04
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1555	COG3279	50	2e-07
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1556	COG3279	43	2e-04
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1860	COG3279	50	2e-07
Response regulator of the LytR/AlgR family	K	Contig12	NmulA1861	COG3279	57	1e-09
Response regulator of the LytR/AlgR family	K	Contig12	NmulA2037	COG3279	40	9e-05
Response regulator of the LytR/AlgR family	K	Contig12	NmulA2207	COG3279	52	2e-07
Response regulator of the LytR/AlgR family	K	Contig12	NmulA2231	COG3279	58	6e-10
Response regulator of the LytR/AlgR family	K	Contig12	NmulA2298	COG3279	46	1e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA2385	COG3279	46	1e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA2671	COG3279	46	5e-06
Response regulator of the LytR/AlgR family	K	Contig12	NmulA2693	COG3279	55	7e-09
Response regulator of the LytR/AlgR family	K	Contig12	NmulA2694	COG3279	50	1e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0007	COG0745	82	2e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0163	COG0745	72	2e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0333	COG0745	86	1e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0334	COG0745	59	4e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0335	COG0745	109	9e-25
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0389	COG0745	103	4e-23
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0542	COG0745	49	7e-07
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0543	COG0745	40	8e-05
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0706	COG0745	190	1e-49
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0728	COG0745	65	4e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0823	COG0745	58	3e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0826	COG0745	43	5e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA0829	COG0745	80	5e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1138	COG0745	75	1e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1161	COG0745	95	9e-21
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1191	COG0745	78	2e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1235	COG0745	53	1e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1246	COG0745	72	3e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1287	COG0745	69	8e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1288	COG0745	67	4e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1336	COG0745	91	5e-20
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1490	COG0745	82	1e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1491	COG0745	89	1e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1492	COG0745	74	3e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1555	COG0745	62	9e-11
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1556	COG0745	68	6e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1860	COG0745	85	6e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA1861	COG0745	85	4e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2037	COG0745	82	2e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2207	COG0745	87	4e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2231	COG0745	237	8e-64
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2297	COG0745	67	8e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2298	COG0745	70	7e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2385	COG0745	67	6e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2411	COG0745	50	6e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2671	COG0745	57	2e-09
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2693	COG0745	109	2e-25
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig12	NmulA2694	COG0745	83	1e-16
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA0179	COG4650	37	0.002
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA0389	COG4650	50	3e-07
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA1161	COG4650	160	3e-40
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA2128	COG4650	108	7e-25
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA2671	COG4650	137	1e-33
SOS-response transcriptional repressors (RecA-mediated autopeptidase)	K	Contig12	NmulA2596	COG1974	87	1e-18
Superfamily II DNA and RNA helicase	K	Contig12	NmulA0639	COG0513	73	9e-14
Superfamily II DNA and RNA helicase	K	Contig12	NmulA0884	COG0513	64	4e-11
Superfamily II DNA and RNA helicase	K	Contig12	NmulA0924	COG0513	43	6e-05
Superfamily II DNA and RNA helicase	K	Contig12	NmulA1361	COG0513	68	2e-12
Superfamily II DNA and RNA helicase	K	Contig12	NmulA1412	COG0513	36	0.007
Superfamily II DNA and RNA helicase	K	Contig12	NmulA1799	COG0513	426	1.0e-120
Superfamily II DNA and RNA helicase	K	Contig12	NmulA2304	COG0513	123	3e-29
Superfamily II DNA and RNA helicase	K	Contig12	NmulA2327	COG0513	40	8e-04
Superfamily II DNA and RNA helicase	K	Contig12	NmulA2657	COG0513	423	1.0e-119
Superfamily II DNA/RNA helicase SNF2 family	K	Contig12	NmulA1799	COG0553	52	8e-08
Superfamily II DNA/RNA helicase SNF2 family	K	Contig12	NmulA2657	COG0553	42	1e-04
Transcriptional accessory protein	K	Contig12	NmulA1585	COG2183	969	0.0
Transcriptional accessory protein	K	Contig12	NmulA1771	COG2183	43	4e-06
Transcriptional accessory protein	K	Contig12	NmulA1953	COG2183	36	0.007
Transcriptional accessory protein	K	Contig12	NmulA2069	COG2183	80	6e-16
Transcriptional accessory protein	K	Contig12	NmulA2222	COG2183	47	3e-07
Transcriptional accessory protein	K	Contig12	NmulA2553	COG2183	58	3e-09
Transcriptional activator adenine-specific DNA methyltransferase	K	Contig12	NmulA2608	COG4725	126	1e-30
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA0132	COG3284	40	3e-05
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA0179	COG3284	35	0.009
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA0389	COG3284	136	3e-33
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA0483	COG3284	38	0.003
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA1161	COG3284	280	2e-76
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA1798	COG3284	36	0.007
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA2128	COG3284	202	4e-53
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA2339	COG3284	36	0.004
Transcriptional activator of acetoin/glycerol metabolism	K	Contig12	NmulA2671	COG3284	292	3e-80
Transcriptional antiterminator	K	Contig12	NmulA0218	COG3933	39	9e-05
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	K	Contig12	NmulA0916	COG4977	155	5e-39
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain	K	Contig12	NmulA1188	COG4977	61	3e-11

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA0165	COG2909	54	2e-09
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA0238	COG2909	58	8e-10
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA0728	COG2909	45	6e-06
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA1235	COG2909	45	5e-06
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA1246	COG2909	38	0.004
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA1336	COG2909	38	5e-04
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA2265	COG2909	36	0.002
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA2417	COG2909	59	3e-10
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA2579	COG2909	58	9e-10
ATP-dependent transcriptional regulator protein	K	Contig12	NmulA2674	COG2909	50	1e-07
Mn-dependent transcriptional regulator protein	K	Contig12	NmulA1683	COG1321	35	0.002
Mn-dependent transcriptional regulator protein	K	Contig12	NmulA2082	COG1321	39	5e-04
Predicted transcriptional regulator protein consists of a Zn-ribbon and ATP-cone domains	K	Contig12	NmulA0005	COG1327	203	4e-54
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	K	Contig12	NmulA1234	COG0864	115	1e-27
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	K	Contig12	NmulA2013	COG0864	36	4e-04
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain	K	Contig12	NmulA1234	COG3609	35	0.003
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain	K	Contig12	NmulA2013	COG3609	33	0.004
Predicted transcriptional regulator protein containing the HTH domain	K	Contig12	NmulA2319	COG1386	165	2e-42
Predicted transcriptional regulator protein	K	Contig10	NmulB2804	COG1396	35	0.002
Predicted transcriptional regulator protein	K	Contig10	NmulB2805	COG3620	36	0.001
Predicted transcriptional regulator protein	K	Contig11	NmulC2782	COG1396	40	3e-05
Predicted transcriptional regulator protein	K	Contig11	NmulC2782	COG3620	36	8e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA0062	COG3311	35	0.001
Predicted transcriptional regulator protein	K	Contig12	NmulA0338	COG3620	53	9e-09
Predicted transcriptional regulator protein	K	Contig12	NmulA0338	COG2524	51	4e-08
Predicted transcriptional regulator protein	K	Contig12	NmulA0452	COG1959	41	2e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA0494	COG0789	63	6e-12
Predicted transcriptional regulator protein	K	Contig12	NmulA0540	COG2524	43	5e-05
Predicted transcriptional regulator protein	K	Contig12	NmulA0674	COG1959	149	1e-37
Predicted transcriptional regulator protein	K	Contig12	NmulA0694	COG1959	138	1e-34
Predicted transcriptional regulator protein	K	Contig12	NmulA0694	COG2524	39	1e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA0801	COG1725	67	3e-12
Predicted transcriptional regulator protein	K	Contig12	NmulA0841	COG2944	65	9e-13
Predicted transcriptional regulator protein	K	Contig12	NmulA0932	COG3311	56	7e-10
Predicted transcriptional regulator protein	K	Contig12	NmulA0947	COG1733	113	5e-27
Predicted transcriptional regulator protein	K	Contig12	NmulA1169	COG3620	52	2e-08
Predicted transcriptional regulator protein	K	Contig12	NmulA1169	COG2524	65	2e-12
Predicted transcriptional regulator protein	K	Contig12	NmulA1198	COG3620	49	1e-07
Predicted transcriptional regulator protein	K	Contig12	NmulA1198	COG2524	75	2e-15
Predicted transcriptional regulator protein	K	Contig12	NmulA1200	COG3620	51	3e-07
Predicted transcriptional regulator protein	K	Contig12	NmulA1200	COG2524	73	5e-14
Predicted transcriptional regulator protein	K	Contig12	NmulA1397	COG1733	105	2e-24
Predicted transcriptional regulator protein	K	Contig12	NmulA1531	COG2944	42	3e-05
Predicted transcriptional regulator protein	K	Contig12	NmulA1531	COG1396	45	4e-06
Predicted transcriptional regulator protein	K	Contig12	NmulA1531	COG3620	40	2e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA1531	COG1709	34	0.005
Predicted transcriptional regulator protein	K	Contig12	NmulA1531	COG1476	46	2e-06
Predicted transcriptional regulator protein	K	Contig12	NmulA1629	COG3355	40	1e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA1629	COG2345	115	3e-27
Predicted transcriptional regulator protein	K	Contig12	NmulA1683	COG0640	60	5e-11
Predicted transcriptional regulator protein	K	Contig12	NmulA1683	COG1733	42	1e-05
Predicted transcriptional regulator protein	K	Contig12	NmulA1683	COG1959	33	0.007
Predicted transcriptional regulator protein	K	Contig12	NmulA1683	COG1777	35	0.002
Predicted transcriptional regulator protein	K	Contig12	NmulA1683	COG2345	38	2e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA1774	COG1959	109	1e-25
Predicted transcriptional regulator protein	K	Contig12	NmulA1942	COG3620	36	4e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA2160	COG3655	48	1e-07
Predicted transcriptional regulator protein	K	Contig12	NmulA2182	COG3311	56	4e-10
Predicted transcriptional regulator protein	K	Contig12	NmulA2210	COG2944	36	0.001
Predicted transcriptional regulator protein	K	Contig12	NmulA2307	COG2345	36	0.007
Predicted transcriptional regulator protein	K	Contig12	NmulA2423	COG2524	39	4e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA2465	COG1475	58	2e-09
Predicted transcriptional regulator protein	K	Contig12	NmulA2596	COG2932	40	9e-05
Predicted transcriptional regulator protein	K	Contig12	NmulA2698	COG2524	39	5e-04
Predicted transcriptional regulator protein	K	Contig12	NmulA2767	COG1475	149	2e-37
Predicted transcriptional regulator protein	K	Contig9	NmulD2824	COG1396	34	0.002
Putative transcriptional regulator protein	K	Contig12	NmulA2081	COG1521	145	4e-36
Putative transcriptional regulator protein	K	Contig12	NmulA2478	COG1678	215	2e-57
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig12	NmulA0007	COG3604	35	0.004
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig12	NmulA0132	COG3604	41	1e-05
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig12	NmulA0335	COG3604	45	2e-05
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig12	NmulA0389	COG3604	123	3e-29
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig12	NmulA1161	COG3604	352	2e-98
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig12	NmulA2128	COG3604	252	3e-68
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig12	NmulA2207	COG3604	51	2e-07
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig12	NmulA2671	COG3604	357	1.0e-100
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0007	COG3829	43	2e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0106	COG3829	38	0.001
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0132	COG3829	46	6e-07
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0202	COG3829	45	4e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0328	COG3829	60	1e-09
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0389	COG3829	145	6e-36
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0483	COG3829	39	0.001
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0630	COG3829	61	3e-10
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA0828	COG3829	50	6e-07
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA1161	COG3829	376	1.0e-105
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA1289	COG3829	40	4e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA1490	COG3829	39	0.001
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA1556	COG3829	42	3e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA1605	COG3829	60	6e-10
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA1709	COG3829	40	0.001
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA1787	COG3829	39	1e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA1798	COG3829	36	0.009
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2015	COG3829	43	8e-05
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2039	COG3829	50	3e-07
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2097	COG3829	39	0.001
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2128	COG3829	272	2e-74
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2207	COG3829	54	6e-08
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2232	COG3829	36	0.005
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2299	COG3829	40	8e-04
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2671	COG3829	371	1.0e-104
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig12	NmulA2725	COG3829	36	0.005
Transcriptional regulator	K	Contig12	NmulA0041	COG1309	51	7e-08
Transcriptional regulator	K	Contig12	NmulA0687	COG0583	169	2e-43
Transcriptional regulator	K	Contig12	NmulA0693	COG1309	59	2e-10
Transcriptional regulator	K	Contig12	NmulA1110	COG0583	106	2e-24
Transcriptional regulator	K	Contig12	NmulA1117	COG1309	50	1e-07
Transcriptional regulator	K	Contig12	NmulA1145	COG0583	148	6e-37
Transcriptional regulator	K	Contig12	NmulA1472	COG0583	133	2e-32
Transcriptional regulator	K	Contig12	NmulA1629	COG1414	34	0.009
Transcriptional regulator	K	Contig12	NmulA1739	COG0583	132	5e-32
Transcriptional regulator	K	Contig12	NmulA1779	COG1309	40	2e-04
Transcriptional regulator	K	Contig12	NmulA1932	COG1309	53	1e-08
Transcriptional regulator	K	Contig12	NmulA1967	COG1309	74	6e-15
Transcriptional regulator	K	Contig12	NmulA2635	COG0583	131	6e-32
Transcriptional regulator of aromatic amino acids metabolism	K	Contig12	NmulA0389	COG3283	117	2e-27
Transcriptional regulator of aromatic amino acids metabolism	K	Contig12	NmulA0630	COG3283	38	0.003
Transcriptional regulator of aromatic amino acids metabolism	K	Contig12	NmulA1161	COG3283	230	1e-61
Transcriptional regulator of aromatic amino acids metabolism	K	Contig12	NmulA1289	COG3283	40	7e-04
Transcriptional regulator of aromatic amino acids metabolism	K	Contig12	NmulA1605	COG3283	40	6e-04
Transcriptional regulator of aromatic amino acids metabolism	K	Contig12	NmulA2128	COG3283	196	2e-51
Transcriptional regulator of aromatic amino acids metabolism	K	Contig12	NmulA2671	COG3283	258	7e-70
Transcriptional regulator of heat shock gene	K	Contig12	NmulA2423	COG1420	308	4e-85
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA0288	COG1167	55	7e-09
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA0675	COG1167	42	7e-05
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA0699	COG1167	42	7e-05
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA0801	COG1167	359	1.0e-100
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA0818	COG1167	87	2e-18
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA1130	COG1167	62	9e-11
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA1360	COG1167	111	1e-25
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA1497	COG1167	38	0.001
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA1552	COG1167	116	3e-27
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA1850	COG1167	137	2e-33
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA2193	COG1167	87	2e-18
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig12	NmulA2256	COG1167	117	2e-27
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA0007	COG1221	34	0.007
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA0106	COG1221	35	0.006
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA0132	COG1221	42	1e-05
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA0179	COG1221	46	5e-06
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA0389	COG1221	117	2e-27
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA0684	COG1221	35	0.006
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA1161	COG1221	268	8e-73
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA2128	COG1221	204	6e-54
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA2248	COG1221	40	9e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA2339	COG1221	41	2e-04
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA2546	COG1221	35	0.009
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA2671	COG1221	266	2e-72
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig12	NmulA2719	COG1221	40	3e-04
Transcriptional regulators	K	Contig12	NmulA0313	COG1737	46	5e-06
Transcriptional regulators	K	Contig12	NmulA0801	COG1802	48	2e-06
Transcriptional regulators	K	Contig12	NmulA0801	COG2188	68	2e-12
Transcriptional regulators	K	Contig12	NmulA0801	COG2186	68	2e-12
Transcriptional regulators	K	Contig12	NmulA1397	COG1846	39	1e-04
Transcriptional regulators	K	Contig12	NmulA1795	COG1737	66	9e-12
Transcriptional regulators of sugar metabolism	K	Contig12	NmulA1629	COG1349	37	0.001
Transcriptional regulator/sugar kinase	K	Contig12	NmulA1872	COG1940	41	2e-04

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcription factor involved in TATA site selection and in elongation by RNA polymerase II	K	Contig12	NmulA2715	COG5296	37	0.003
Transcription-repair coupling factor (superfamily II helicase)	K	Contig12	NmulA0639	COG1197	1345	0.0
Transcription-repair coupling factor (superfamily II helicase)	K	Contig12	NmulA0884	COG1197	329	4e-91
Transcription-repair coupling factor (superfamily II helicase)	K	Contig12	NmulA1361	COG1197	136	4e-33
Transcription-repair coupling factor (superfamily II helicase)	K	Contig12	NmulA1799	COG1197	40	4e-04
Transcription-repair coupling factor (superfamily II helicase)	K	Contig12	NmulA2304	COG1197	48	2e-06
Transcription-repair coupling factor (superfamily II helicase)	K	Contig12	NmulA2327	COG1197	60	6e-10

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