Intracellular trafficking and secretion

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flagellar biosynthesis pathway component FlhA	U	Contig54	Nmar1652	COG1298	41	5e-04
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig54	Nmar1690	COG1157	246	2e-66
Flagellar biosynthesis/type III secretory pathway ATPase	U	Contig54	Nmar1691	COG1157	150	2e-37
Predicted ATPase involved in biogenesis of flagella	U	Contig54	Nmar0087	COG2874	47	1e-06

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Flp pilus assembly protein ATPase CpaE	U	Contig54	Nmar1234	COG4963	41	2e-04
Flp pilus assembly protein ATPase CpaF	U	Contig54	Nmar1054	COG4962	53	7e-08
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar0069	COG5010	45	6e-06
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar0351	COG5010	43	6e-05
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar0438	COG5010	41	6e-05
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar0681	COG5010	48	1e-06
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar0739	COG5010	47	2e-07
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar0740	COG5010	38	4e-04
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar0986	COG5010	50	3e-07
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar1019	COG5010	48	6e-07
Flp pilus assembly protein TadD contains TPR repeats	U	Contig54	Nmar1618	COG5010	45	4e-06
Periplasmic component of the Tol biopolymer transport system	U	Contig54	Nmar1436	COG0823	45	1e-05
Phox homology (PX) domain protein	U	Contig54	Nmar0096	COG5391	38	0.001
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake	U	Contig54	Nmar1030	COG0758	35	0.003
Preprotein translocase subunit Sec63	U	Contig54	Nmar0097	COG5407	71	1e-13
Preprotein translocase subunit Sec63	U	Contig54	Nmar0737	COG5407	55	4e-09
Preprotein translocase subunit Sec63	U	Contig54	Nmar1024	COG5407	37	9e-04
Preprotein translocase subunit Sec63	U	Contig54	Nmar1767	COG5407	42	7e-05

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Preprotein translocase subunit SecY	U	Contig54	Nmar0402	COG0201	199	3e-52

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Sec-independent protein secretion pathway components	U	Contig54	Nmar0773	COG1826	38	1e-04
Sec-independent protein secretion pathway components	U	Contig54	Nmar1318	COG1826	41	2e-05
Sec-independent protein secretion pathway component TatC	U	Contig54	Nmar0774	COG0805	152	2e-38
Signal peptidase I	U	Contig54	Nmar0208	COG0681	38	8e-04
Signal recognition particle 19 kDa protein	U	Contig54	Nmar0519	COG1400	66	4e-13
Signal recognition particle GTPase	U	Contig54	Nmar0078	COG0541	34	0.009
Signal recognition particle GTPase	U	Contig54	Nmar0396	COG0552	307	1e-84
Signal recognition particle GTPase	U	Contig54	Nmar0396	COG0541	247	2e-66
Signal recognition particle GTPase	U	Contig54	Nmar0403	COG0541	36	0.002
Signal recognition particle GTPase	U	Contig54	Nmar0531	COG0552	213	2e-56
Signal recognition particle GTPase	U	Contig54	Nmar0531	COG0541	475	1.0e-135
Tfp pilus assembly protein ATPase PilU	U	Contig54	Nmar1054	COG5008	39	0.001
Tfp pilus assembly protein PilF	U	Contig54	Nmar0069	COG3063	35	0.007
Tfp pilus assembly protein PilF	U	Contig54	Nmar0438	COG3063	36	0.001
Tfp pilus assembly protein PilF	U	Contig54	Nmar0681	COG3063	48	8e-07
Tfp pilus assembly protein PilF	U	Contig54	Nmar0740	COG3063	57	7e-10
Tfp pilus assembly protein PilF	U	Contig54	Nmar0986	COG3063	46	8e-06
Tfp pilus assembly protein PilF	U	Contig54	Nmar1019	COG3063	49	5e-07
Tfp pilus assembly protein PilF	U	Contig54	Nmar1564	COG3063	41	4e-05
Tfp pilus assembly protein PilF	U	Contig54	Nmar1618	COG3063	39	3e-04
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig54	Nmar0243	COG2805	37	0.004
Tfp pilus assembly protein pilus retraction ATPase PilT	U	Contig54	Nmar1054	COG2805	38	0.002
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB	U	Contig54	Nmar1054	COG2804	58	2e-09
Type IV secretory pathway TrbL protein	U	Contig54	Nmar0683	COG3846	33	0.007
Type IV secretory pathway VirB10 protein	U	Contig54	Nmar0396	COG2948	44	2e-05
Type IV secretory pathway VirB10 protein	U	Contig54	Nmar0556	COG2948	47	4e-06
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis	U	Contig54	Nmar1054	COG0630	62	2e-10
Vesicle coat complex various subunits	U	Contig54	Nmar0254	COG5096	33	0.009
Vesicle coat complex various subunits	U	Contig54	Nmar1251	COG5096	36	0.001

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