Transcription

BASAL TRANSCRIPTION FACTORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase subunit M/Transcription elongation factor TFIIS	K	Contig54	Nmar1756	COG1594	83	4e-18
Predicted transcription factor homolog of eukaryotic MBF1	K	Contig54	Nmar0952	COG1813	46	2e-06
TATA-box binding protein (TBP) component of TFIID and TFIIIB	K	Contig54	Nmar0598	COG2101	212	1e-56
TATA-box binding protein (TBP) component of TFIID and TFIIIB	K	Contig54	Nmar1519	COG2101	207	3e-55
Transcription antiterminator	K	Contig54	Nmar0386	COG0250	72	2e-14
Transcription elongation factor	K	Contig54	Nmar0353	COG0195	102	1e-23
Transcription elongation factor	K	Contig54	Nmar1065	COG0195	37	0.001
Transcription factor homologous to NACalpha-BTF3	K	Contig54	Nmar1602	COG1308	80	5e-17
Transcription initiation factor IIE alpha subunit	K	Contig54	Nmar1607	COG1675	104	4e-24
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar0013	COG1405	216	2e-57
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar0020	COG1405	262	3e-71
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar0517	COG1405	205	4e-54
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar0624	COG1405	275	4e-75
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar0979	COG1405	220	1e-58
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar0987	COG1405	261	5e-71
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar1287	COG1405	33	0.006
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar1340	COG1405	247	6e-67
Transcription initiation factor TFIIIB Brf1 subunit/Transcription initiation factor TFIIB	K	Contig54	Nmar1341	COG1405	197	9e-52
Transcription termination factor	K	Contig54	Nmar1691	COG1158	43	5e-05

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Biotin operon repressor	K	Contig54	Nmar0984	COG1654	66	2e-12
Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK cyclin H subunit	K	Contig54	Nmar0987	COG5333	47	2e-06
Cold shock protein	K	Contig54	Nmar0527	COG1278	71	1e-14
DNA-binding protein	K	Contig54	Nmar0255	COG1581	74	2e-15
DNA-binding protein	K	Contig54	Nmar0644	COG1581	54	2e-09
DNA-binding protein	K	Contig54	Nmar0933	COG1581	46	5e-07

DNA-DEPENDENT RNA POLYMERASE SUBUNITS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase alpha subunit/40 kD subunit	K	Contig54	Nmar0428	COG0202	88	5e-19
DNA-directed RNA polymerase beta subunit/140 kD subunit	K	Contig54	Nmar0347	COG0085	1004	0.0
DNA-directed RNA polymerase beta' subunit/160 kD subunit	K	Contig54	Nmar0348	COG0086	720	0.0
DNA-directed RNA polymerase subunit E'	K	Contig54	Nmar0077	COG1095	38	0.001
DNA-directed RNA polymerase subunit E'	K	Contig54	Nmar1235	COG1095	178	3e-46
DNA-directed RNA polymerase subunit E''	K	Contig54	Nmar1236	COG2093	69	6e-14
DNA-directed RNA polymerase subunit H RpoH/RPB5	K	Contig54	Nmar0346	COG2012	91	1e-20
DNA-directed RNA polymerase subunit K/omega	K	Contig54	Nmar0932	COG1758	46	2e-06
DNA-directed RNA polymerase subunit L	K	Contig54	Nmar1757	COG1761	40	4e-05
DNA-directed RNA polymerase subunit N (RpoN/RPB10)	K	Contig54	Nmar0318	COG1644	91	2e-20
DNA-directed RNA polymerase subunit RPC10 (contains C4-type Zn-finger)	K	Contig54	Nmar1032	COG1996	42	8e-06

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
DNA-directed RNA polymerase III subunit C34	K	Contig54	Nmar0033	COG5111	32	0.007
DNA helicase TIP49 TBP-interacting protein	K	Contig54	Nmar0001	COG1224	36	0.005
DNA helicase TIP49 TBP-interacting protein	K	Contig54	Nmar0011	COG1224	43	1e-04
DNA helicase TIP49 TBP-interacting protein	K	Contig54	Nmar0101	COG1224	49	1e-06
DNA helicase TIP49 TBP-interacting protein	K	Contig54	Nmar0270	COG1224	45	7e-06
DNA helicase TIP49 TBP-interacting protein	K	Contig54	Nmar1088	COG1224	38	0.001
DNA helicase TIP49 TBP-interacting protein	K	Contig54	Nmar1223	COG1224	39	0.002
DNA or RNA helicase of superfamily II	K	Contig54	Nmar0088	COG1061	55	3e-08
DNA or RNA helicase of superfamily II	K	Contig54	Nmar0243	COG1061	79	1e-15
DNA or RNA helicase of superfamily II	K	Contig54	Nmar0608	COG1061	49	2e-06
DNA or RNA helicase of superfamily II	K	Contig54	Nmar0726	COG1061	60	3e-10
DNA or RNA helicase of superfamily II	K	Contig54	Nmar0944	COG1061	77	2e-15
DNA or RNA helicase of superfamily II	K	Contig54	Nmar1105	COG1061	55	1e-08
DNA or RNA helicase of superfamily II	K	Contig54	Nmar1182	COG1061	71	1e-13
DNA or RNA helicase of superfamily II	K	Contig54	Nmar1320	COG1061	45	2e-05
Exoribonuclease R	K	Contig54	Nmar1235	COG0557	38	3e-04
Guanosine polyphosphate pyrophosphohydrolase/synthetase	K	Contig54	Nmar1534	COG0317	39	5e-04
Histone acetyltransferase	K	Contig54	Nmar0201	COG1243	36	0.004
Histone acetyltransferase	K	Contig54	Nmar0579	COG1243	576	1.0e-165
Histone acetyltransferase	K	Contig54	Nmar0821	COG1243	41	1e-04
Histone acetyltransferase	K	Contig54	Nmar1261	COG1243	40	4e-04
NAD-dependent protein deacetylase SIR2 family	K	Contig54	Nmar1629	COG0846	33	0.006
NAD-dependent protein deacetylase SIR2 family	K	Contig54	Nmar1777	COG0846	271	5e-74
Nucleosome binding factor SPN SPT16 subunit	K	Contig54	Nmar1724	COG5406	55	5e-09
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	K	Contig54	Nmar1074	COG1842	36	0.006
Predicted RNA-binding protein homologous to eukaryotic snRNP	K	Contig54	Nmar0055	COG1293	224	1e-59
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar0568	COG4109	38	3e-04
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar0673	COG4109	41	6e-05
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar0764	COG4109	46	6e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar0778	COG4109	33	0.007
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar0832	COG4109	46	4e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar1007	COG4109	46	3e-06
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar1271	COG4109	43	3e-05
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar1304	COG4109	42	2e-05
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar1481	COG4109	40	2e-04
Predicted transcriptional regulator protein containing CBS domains	K	Contig54	Nmar1569	COG4109	63	5e-11
Predicted transcriptional regulator protein	K	Contig54	Nmar0113	COG4742	39	2e-04
Predicted transcriptional regulator protein	K	Contig54	Nmar0202	COG4742	43	4e-06
Predicted transcriptional regulator protein	K	Contig54	Nmar0202	COG4189	43	6e-06
Predicted transcriptional regulator protein	K	Contig54	Nmar0487	COG4189	41	2e-05
Predicted transcriptional regulator protein	K	Contig54	Nmar1014	COG4742	76	2e-15
Predicted transcriptional regulator protein	K	Contig54	Nmar1147	COG4189	34	0.006
Predicted transcriptional regulator protein	K	Contig54	Nmar1152	COG4742	32	0.006
Predicted transcriptional regulator protein	K	Contig54	Nmar1155	COG4190	35	0.001
Predicted transcriptional regulator protein	K	Contig54	Nmar1155	COG4189	35	0.001
Predicted transcriptional regulator protein	K	Contig54	Nmar1313	COG4742	35	0.002
Predicted transcriptional regulator protein	K	Contig54	Nmar1338	COG4190	36	0.003
Predicted transcriptional regulator protein	K	Contig54	Nmar1338	COG4742	87	1e-18
Predicted transcriptional regulator protein	K	Contig54	Nmar1352	COG4742	74	1e-14
Predicted transcriptional regulator protein	K	Contig54	Nmar1628	COG4742	37	0.004
Rad3-related DNA helicase	K	Contig54	Nmar0243	COG1199	44	4e-05
Rad3-related DNA helicase	K	Contig54	Nmar0888	COG1199	119	3e-28
Rad3-related DNA helicase	K	Contig54	Nmar1105	COG1199	39	0.002
Rad3-related DNA helicase	K	Contig54	Nmar1182	COG1199	37	0.002
Rad3-related DNA helicase	K	Contig54	Nmar1320	COG1199	39	0.002
RecG-like helicase	K	Contig54	Nmar0088	COG1200	38	0.003
RecG-like helicase	K	Contig54	Nmar0243	COG1200	43	6e-05
RecG-like helicase	K	Contig54	Nmar0944	COG1200	45	1e-05
RecG-like helicase	K	Contig54	Nmar1105	COG1200	50	5e-07
RecG-like helicase	K	Contig54	Nmar1182	COG1200	70	3e-13
RecG-like helicase	K	Contig54	Nmar1320	COG1200	43	7e-05
Regulators of stationary/sporulation gene expression	K	Contig54	Nmar0993	COG2002	39	1e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar0251	COG4567	35	0.003
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar0376	COG4567	33	0.005
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar0452	COG4567	50	7e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar0465	COG4567	43	5e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar0707	COG4567	35	0.006
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar1045	COG4567	38	2e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar1202	COG4567	55	2e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar1206	COG4567	73	8e-15
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar1248	COG4567	43	5e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	K	Contig54	Nmar1619	COG4567	48	2e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar0251	COG3437	51	3e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar0376	COG3437	52	1e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar0452	COG3437	58	3e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar0465	COG3437	46	9e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar0707	COG3437	50	2e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar1045	COG3437	48	2e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar1202	COG3437	66	8e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar1206	COG3437	69	1e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar1248	COG3437	49	6e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	K	Contig54	Nmar1619	COG3437	50	5e-08
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar0251	COG2197	58	1e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar0376	COG2197	74	3e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar0452	COG2197	68	1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar0465	COG2197	63	5e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar0707	COG2197	55	5e-09
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar1045	COG2197	53	7e-09
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar1202	COG2197	67	3e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar1206	COG2197	64	4e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar1248	COG2197	56	7e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	K	Contig54	Nmar1619	COG2197	56	8e-10
Response regulator of citrate/malate metabolism	K	Contig54	Nmar0251	COG4565	49	1e-07
Response regulator of citrate/malate metabolism	K	Contig54	Nmar0376	COG4565	58	3e-10
Response regulator of citrate/malate metabolism	K	Contig54	Nmar0452	COG4565	55	1e-09
Response regulator of citrate/malate metabolism	K	Contig54	Nmar0465	COG4565	51	4e-08
Response regulator of citrate/malate metabolism	K	Contig54	Nmar0707	COG4565	48	6e-07
Response regulator of citrate/malate metabolism	K	Contig54	Nmar1045	COG4565	40	6e-05
Response regulator of citrate/malate metabolism	K	Contig54	Nmar1202	COG4565	58	2e-10
Response regulator of citrate/malate metabolism	K	Contig54	Nmar1206	COG4565	59	1e-10
Response regulator of citrate/malate metabolism	K	Contig54	Nmar1248	COG4565	40	4e-05
Response regulator of citrate/malate metabolism	K	Contig54	Nmar1619	COG4565	47	3e-07
Response regulator of the LytR/AlgR family	K	Contig54	Nmar0251	COG3279	55	1e-09
Response regulator of the LytR/AlgR family	K	Contig54	Nmar0376	COG3279	56	1e-09
Response regulator of the LytR/AlgR family	K	Contig54	Nmar0452	COG3279	49	1e-07
Response regulator of the LytR/AlgR family	K	Contig54	Nmar0465	COG3279	49	1e-07
Response regulator of the LytR/AlgR family	K	Contig54	Nmar0707	COG3279	44	7e-06
Response regulator of the LytR/AlgR family	K	Contig54	Nmar1202	COG3279	50	4e-08
Response regulator of the LytR/AlgR family	K	Contig54	Nmar1206	COG3279	58	2e-10
Response regulator of the LytR/AlgR family	K	Contig54	Nmar1248	COG3279	56	4e-10
Response regulator of the LytR/AlgR family	K	Contig54	Nmar1619	COG3279	49	9e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar0251	COG0745	51	2e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar0376	COG0745	66	7e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar0452	COG0745	64	3e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar0465	COG0745	46	9e-07
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar0707	COG0745	52	4e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar1045	COG0745	66	7e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar1202	COG0745	65	1e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar1206	COG0745	67	5e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar1248	COG0745	50	5e-08
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	K	Contig54	Nmar1619	COG0745	53	4e-09
Serine/threonine protein kinase	K	Contig54	Nmar1531	COG0515	41	5e-05
Small nuclear ribonucleoprotein (snRNP) homolog	K	Contig54	Nmar0086	COG1958	55	1e-09
Small nuclear ribonucleoprotein (snRNP) homolog	K	Contig54	Nmar0221	COG1958	65	8e-13
Small nuclear ribonucleoprotein (snRNP) homolog	K	Contig54	Nmar0349	COG1958	52	6e-09
Superfamily II DNA and RNA helicase	K	Contig54	Nmar0088	COG0513	151	3e-37
Superfamily II DNA and RNA helicase	K	Contig54	Nmar0243	COG0513	89	1e-18
Superfamily II DNA and RNA helicase	K	Contig54	Nmar0726	COG0513	38	0.002
Superfamily II DNA and RNA helicase	K	Contig54	Nmar0944	COG0513	76	5e-15
Superfamily II DNA and RNA helicase	K	Contig54	Nmar1105	COG0513	64	4e-11
Superfamily II DNA and RNA helicase	K	Contig54	Nmar1182	COG0513	387	1.0e-109
Superfamily II DNA and RNA helicase	K	Contig54	Nmar1320	COG0513	134	2e-32
Superfamily II DNA/RNA helicase SNF2 family	K	Contig54	Nmar0726	COG0553	154	1e-38
Superfamily II DNA/RNA helicase SNF2 family	K	Contig54	Nmar0944	COG0553	60	4e-10
Superfamily II DNA/RNA helicase SNF2 family	K	Contig54	Nmar1182	COG0553	36	0.007
TATA-binding protein-associated factor	K	Contig54	Nmar1009	COG5414	36	0.003
Transcriptional accessory protein	K	Contig54	Nmar0077	COG2183	38	7e-04
Transcriptional accessory protein	K	Contig54	Nmar1235	COG2183	40	1e-04
Transcriptional activator adenine-specific DNA methyltransferase	K	Contig54	Nmar1165	COG4725	100	3e-22
Transcriptional activator of acetoin/glycerol metabolism	K	Contig54	Nmar0101	COG3284	39	0.001

TRANSCRIPTIONAL REGULATORS

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Mn-dependent transcriptional regulator protein	K	Contig54	Nmar0113	COG1321	103	8e-24
Mn-dependent transcriptional regulator protein	K	Contig54	Nmar1053	COG1321	110	5e-26
Mn-dependent transcriptional regulator protein	K	Contig54	Nmar1132	COG1321	115	1e-27
Mn-dependent transcriptional regulator protein	K	Contig54	Nmar1155	COG1321	35	0.002
Mn-dependent transcriptional regulator protein	K	Contig54	Nmar1338	COG1321	36	0.003
Mn-dependent transcriptional regulator protein	K	Contig54	Nmar1664	COG1321	117	4e-28
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain	K	Contig54	Nmar1656	COG0864	78	1e-16
Predicted transcriptional regulator protein containing the CopG/Arc/MetJ DNA-binding domain	K	Contig54	Nmar1656	COG3609	36	7e-04
Predicted transcriptional regulator protein containing the HTH domain	K	Contig54	Nmar0521	COG1386	97	9e-22
Predicted transcriptional regulator protein	K	Contig54	Nmar0033	COG3432	44	2e-06
Predicted transcriptional regulator protein	K	Contig54	Nmar0114	COG1378	106	1e-24
Predicted transcriptional regulator protein	K	Contig54	Nmar0164	COG3620	41	1e-04
Predicted transcriptional regulator protein	K	Contig54	Nmar0164	COG2524	55	4e-09
Predicted transcriptional regulator protein	K	Contig54	Nmar0202	COG0640	34	0.003
Predicted transcriptional regulator protein	K	Contig54	Nmar0202	COG1777	33	0.005
Predicted transcriptional regulator protein	K	Contig54	Nmar0202	COG2345	33	0.005
Predicted transcriptional regulator protein	K	Contig54	Nmar0202	COG1497	34	0.002
Predicted transcriptional regulator protein	K	Contig54	Nmar0257	COG1695	56	2e-09
Predicted transcriptional regulator protein	K	Contig54	Nmar0472	COG1777	37	0.001
Predicted transcriptional regulator protein	K	Contig54	Nmar0472	COG2345	36	0.003
Predicted transcriptional regulator protein	K	Contig54	Nmar0487	COG0640	61	2e-11
Predicted transcriptional regulator protein	K	Contig54	Nmar0487	COG3355	33	0.005
Predicted transcriptional regulator protein	K	Contig54	Nmar0487	COG1777	32	0.009
Predicted transcriptional regulator protein	K	Contig54	Nmar0568	COG3620	53	7e-09
Predicted transcriptional regulator protein	K	Contig54	Nmar0568	COG2524	79	1e-16
Predicted transcriptional regulator protein	K	Contig54	Nmar0673	COG3620	50	8e-08
Predicted transcriptional regulator protein	K	Contig54	Nmar0673	COG2524	66	1e-12
Predicted transcriptional regulator protein	K	Contig54	Nmar0705	COG1378	76	3e-15
Predicted transcriptional regulator protein	K	Contig54	Nmar0764	COG3620	40	4e-04
Predicted transcriptional regulator protein	K	Contig54	Nmar0764	COG2524	70	6e-13
Predicted transcriptional regulator protein	K	Contig54	Nmar0778	COG3620	67	6e-13
Predicted transcriptional regulator protein	K	Contig54	Nmar0778	COG2524	68	3e-13
Predicted transcriptional regulator protein	K	Contig54	Nmar0832	COG2524	40	2e-04
Predicted transcriptional regulator protein	K	Contig54	Nmar0877	COG2345	36	9e-04
Predicted transcriptional regulator protein	K	Contig54	Nmar0952	COG2944	39	2e-04
Predicted transcriptional regulator protein	K	Contig54	Nmar0952	COG1396	42	4e-05
Predicted transcriptional regulator protein	K	Contig54	Nmar0952	COG3620	122	1e-29
Predicted transcriptional regulator protein	K	Contig54	Nmar0952	COG1709	41	4e-05
Predicted transcriptional regulator protein	K	Contig54	Nmar0952	COG2524	46	1e-06
Predicted transcriptional regulator protein	K	Contig54	Nmar0952	COG1395	36	0.002
Predicted transcriptional regulator protein	K	Contig54	Nmar0952	COG1476	46	1e-06
Predicted transcriptional regulator protein	K	Contig54	Nmar0983	COG1733	36	0.002
Predicted transcriptional regulator protein	K	Contig54	Nmar1007	COG2524	38	0.001
Predicted transcriptional regulator protein	K	Contig54	Nmar1091	COG1378	96	3e-21
Predicted transcriptional regulator protein	K	Contig54	Nmar1155	COG0640	65	2e-12
Predicted transcriptional regulator protein	K	Contig54	Nmar1155	COG2345	35	0.002
Predicted transcriptional regulator protein	K	Contig54	Nmar1155	COG1497	33	0.005
Predicted transcriptional regulator protein	K	Contig54	Nmar1166	COG1475	40	5e-05
Predicted transcriptional regulator protein	K	Contig54	Nmar1271	COG3620	44	1e-05
Predicted transcriptional regulator protein	K	Contig54	Nmar1271	COG2524	56	4e-09
Predicted transcriptional regulator protein	K	Contig54	Nmar1276	COG1497	34	0.006
Predicted transcriptional regulator protein	K	Contig54	Nmar1292	COG2345	33	0.009
Predicted transcriptional regulator protein	K	Contig54	Nmar1304	COG3620	58	3e-10
Predicted transcriptional regulator protein	K	Contig54	Nmar1304	COG2524	66	1e-12
Predicted transcriptional regulator protein	K	Contig54	Nmar1313	COG1777	33	0.009
Predicted transcriptional regulator protein	K	Contig54	Nmar1326	COG0640	43	1e-05
Predicted transcriptional regulator protein	K	Contig54	Nmar1326	COG3355	36	0.001
Predicted transcriptional regulator protein	K	Contig54	Nmar1326	COG2345	44	7e-06
Predicted transcriptional regulator protein	K	Contig54	Nmar1326	COG1497	38	3e-04
Predicted transcriptional regulator protein	K	Contig54	Nmar1331	COG1475	57	1e-09
Predicted transcriptional regulator protein	K	Contig54	Nmar1359	COG1777	35	0.006
Predicted transcriptional regulator protein	K	Contig54	Nmar1372	COG0640	58	2e-10
Predicted transcriptional regulator protein	K	Contig54	Nmar1426	COG3432	57	3e-10
Predicted transcriptional regulator protein	K	Contig54	Nmar1446	COG3432	52	9e-09
Predicted transcriptional regulator protein	K	Contig54	Nmar1481	COG3620	40	3e-04
Predicted transcriptional regulator protein	K	Contig54	Nmar1481	COG2524	63	3e-11
Predicted transcriptional regulator protein	K	Contig54	Nmar1497	COG2345	42	7e-05
Predicted transcriptional regulator protein	K	Contig54	Nmar1569	COG3620	52	1e-07
Predicted transcriptional regulator protein	K	Contig54	Nmar1569	COG2524	63	4e-11
Predicted transcriptional regulator protein	K	Contig54	Nmar1624	COG1725	33	0.009
Predicted transcriptional regulator protein	K	Contig54	Nmar1645	COG0640	34	0.005
Predicted transcriptional regulator protein	K	Contig54	Nmar1661	COG1733	103	6e-24
Predicted transcriptional regulator protein	K	Contig54	Nmar1661	COG1695	34	0.003
Predicted transcriptional regulator protein	K	Contig54	Nmar1664	COG1497	38	3e-04
Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains	K	Contig54	Nmar1643	COG3604	36	0.006
Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains	K	Contig54	Nmar0101	COG3829	43	8e-05
Transcriptional regulator contains sigma factor-related N-terminal domain	K	Contig54	Nmar0472	COG2390	36	0.003
Transcriptional regulator	K	Contig54	Nmar0114	COG1414	36	0.004
Transcriptional regulator	K	Contig54	Nmar1155	COG1414	44	4e-06
Transcriptional regulator	K	Contig54	Nmar1372	COG1414	39	5e-05
Transcriptional regulator	K	Contig54	Nmar1426	COG1414	38	2e-04
Transcriptional regulator	K	Contig54	Nmar1674	COG1414	37	0.001
Transcriptional regulator of a riboflavin/FAD biosynthetic operon	K	Contig54	Nmar1301	COG1339	167	8e-43
Transcriptional regulator of heat shock gene	K	Contig54	Nmar1624	COG1420	35	0.002
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar0177	COG1167	146	2e-36
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar0341	COG1167	40	3e-04
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar0497	COG1167	47	4e-06
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar0546	COG1167	140	3e-34
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar0819	COG1167	51	2e-07
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar0865	COG1167	93	4e-20
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar1557	COG1167	100	3e-22
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar1585	COG1167	84	1e-17
Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs	K	Contig54	Nmar1748	COG1167	52	8e-08
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain	K	Contig54	Nmar1643	COG1221	38	0.001
Transcriptional regulators	K	Contig54	Nmar0167	COG1737	61	1e-10
Transcriptional regulators	K	Contig54	Nmar0323	COG1737	76	8e-15
Transcriptional regulators	K	Contig54	Nmar0383	COG1522	84	3e-18
Transcriptional regulators	K	Contig54	Nmar0487	COG1522	32	0.010
Transcriptional regulators	K	Contig54	Nmar0512	COG1522	63	2e-11
Transcriptional regulators	K	Contig54	Nmar0738	COG1522	98	3e-22
Transcriptional regulators	K	Contig54	Nmar0747	COG1737	37	0.002
Transcriptional regulators	K	Contig54	Nmar0854	COG1522	32	0.010
Transcriptional regulators	K	Contig54	Nmar0921	COG1846	39	7e-04
Transcriptional regulators	K	Contig54	Nmar1001	COG1522	38	1e-04
Transcriptional regulators	K	Contig54	Nmar1147	COG1522	59	1e-10
Transcriptional regulators	K	Contig54	Nmar1155	COG1846	35	0.002
Transcriptional regulators	K	Contig54	Nmar1197	COG1522	33	0.006
Transcriptional regulators	K	Contig54	Nmar1292	COG1522	80	4e-17
Transcriptional regulators	K	Contig54	Nmar1456	COG1609	35	0.007
Transcriptional regulators	K	Contig54	Nmar1485	COG1522	36	5e-04
Transcriptional regulators	K	Contig54	Nmar1524	COG1522	41	2e-05
Transcriptional regulators	K	Contig54	Nmar1587	COG1522	64	4e-12
Transcriptional regulators	K	Contig54	Nmar1695	COG1522	55	7e-09
Transcriptional regulators	K	Contig54	Nmar1715	COG1522	66	3e-12
Transcriptional regulators	K	Contig54	Nmar1762	COG1522	34	0.002
Transcriptional regulators of sugar metabolism	K	Contig54	Nmar0930	COG1349	34	0.003
Transcriptional regulator/sugar kinase	K	Contig54	Nmar1576	COG1940	198	5e-52

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
Transcriptional repressor	K	Contig54	Nmar0998	COG5175	36	0.008
Transcription-repair coupling factor (superfamily II helicase)	K	Contig54	Nmar0088	COG1197	38	0.003
Transcription-repair coupling factor (superfamily II helicase)	K	Contig54	Nmar0944	COG1197	44	2e-05
Transcription-repair coupling factor (superfamily II helicase)	K	Contig54	Nmar1105	COG1197	130	3e-31
Transcription-repair coupling factor (superfamily II helicase)	K	Contig54	Nmar1182	COG1197	42	1e-04

SiteMap Feedback Life Sciences Division ORNL Disclaimer Webmaster