| Kingdom |
Category |
Genus/Species |
Count |
|
|
|
51 |
| Archaea |
|
|
748 |
| |
|
|
51 |
| |
Crenarchaeota |
|
241 |
| |
|
Aeropyrum pernix (ape) |
10 |
| |
|
Caldivirga maquilingensis (cma) |
14 |
| |
|
Hyperthermus butylicus (hbu) |
24 |
| |
|
Ignicoccus hospitalis (iho) |
22 |
| |
|
Metallosphaera sedula (mse) |
19 |
| |
|
Pyrobaculum aerophilum (pai) |
5 |
| |
|
Pyrobaculum arsenaticum (pas) |
5 |
| |
|
Pyrobaculum calidifontis (pcl) |
5 |
| |
|
Pyrobaculum islandicum (pis) |
7 |
| |
|
Sulfolobus acidocaldarius (sai) |
14 |
| |
|
Staphylothermus marinus (smr) |
23 |
| |
|
Sulfolobus solfataricus (sso) |
25 |
| |
|
Sulfolobus tokodaii (sto) |
27 |
| |
|
Thermofilum pendens (tpe) |
41 |
| |
Euryarchaeota |
|
505 |
| |
|
Archaeoglobus fulgidus (afu) |
30 |
| |
|
Halobacterium sp. NRC-1 (hal) |
4 |
| |
|
Haloarcula marismortui (hma) |
12 |
| |
|
Haloquadratum walsbyi (hwa) |
9 |
| |
|
Methanosarcina acetivorans (mac) |
17 |
| |
|
Methanococcus aeolicus (mae) |
10 |
| |
|
Methanosarcina barkeri (mba) |
27 |
| |
|
Candidatus Methanoregula boonei (mbn) |
11 |
| |
|
Methanococcoides burtonii (mbu) |
23 |
| |
|
Methanoculleus marisnigri (mem) |
8 |
| |
|
Methanospirillum hungatei (mhu) |
4 |
| |
|
Methanococcus jannaschii (mja) |
33 |
| |
|
Methanopyrus kandleri (mka) |
29 |
| |
|
Methanocorpusculum labreanum (mla) |
5 |
| |
|
Methanosarcina mazei (mma) |
14 |
| |
|
Methanococcus maripaludis S2 (mmp) |
10 |
| |
|
Methanococcus maripaludis C5 (mmq) |
3 |
| |
|
Methanococcus maripaludis C6 (mmx) |
7 |
| |
|
Methanococcus maripaludis C7 (mmz) |
3 |
| |
|
Methanobrevibacter smithii ATCC 35061 (msi) |
15 |
| |
|
Methanosphaera stadtmanae (mst) |
16 |
| |
|
Methanobacterium thermoautotrophicum (mth) |
31 |
| |
|
Methanosaeta thermophila (mtp) |
12 |
| |
|
Methanococcus vannielii (mvn) |
11 |
| |
|
Natronomonas pharaonis (nph) |
7 |
| |
|
Pyrococcus abyssi (pab) |
22 |
| |
|
Pyrococcus furiosus (pfu) |
27 |
| |
|
Pyrococcus horikoshii (pho) |
17 |
| |
|
Picrophilus torridus (pto) |
12 |
| |
|
Uncultured methanogenic archaeon RC-I (rci) |
30 |
| |
|
Thermoplasma acidophilum (tac) |
13 |
| |
|
Thermococcus kodakaraensis (tko) |
20 |
| |
|
Thermoplasma volcanium (tvo) |
13 |
| |
Nanoarchaeota |
|
2 |
| |
|
Nanoarchaeum equitans (neq) |
2 |
| Bacteria |
|
|
499 |
| |
Acidobacteria |
|
20 |
| |
|
Acidobacteria bacterium (aba) |
9 |
| |
|
Solibacter usitatus (sus) |
11 |
| |
Actinobacteria |
|
48 |
| |
|
Arthrobacter aurescens (aau) |
1 |
| |
|
Corynebacterium efficiens (cef) |
1 |
| |
|
Corynebacterium jeikeium (cjk) |
1 |
| |
|
Frankia alni (fal) |
1 |
| |
|
Frankia sp. CcI3 (fra) |
1 |
| |
|
Mycobacterium gilvum (mgi) |
2 |
| |
|
Mycobacterium sp. KMS (mkm) |
1 |
| |
|
Mycobacterium smegmatis (msm) |
2 |
| |
|
Nocardioides sp. JS614 (nca) |
2 |
| |
|
Nocardia farcinica (nfa) |
2 |
| |
|
Rhodococcus sp. RHA1 (rha) |
3 |
| |
|
Rubrobacter xylanophilus (rxy) |
21 |
| |
|
Salinispora arenicola (saq) |
1 |
| |
|
Streptomyces coelicolor (sco) |
3 |
| |
|
Saccharopolyspora erythraea (sen) |
1 |
| |
|
Streptomyces avermitilis (sma) |
2 |
| |
|
Salinispora tropica (stp) |
1 |
| |
|
Thermobifida fusca (tfu) |
2 |
| |
Bacteroides |
|
13 |
| |
|
Bacteroides fragilis YCH46 (bfr) |
1 |
| |
|
Bacteroides vulgatus (bvu) |
1 |
| |
|
Cytophaga hutchinsonii (chu) |
4 |
| |
|
Flavobacterium johnsoniae (fjo) |
2 |
| |
|
Gramella forsetii (gfo) |
4 |
| |
|
Porphyromonas gingivalis (pgi) |
1 |
| |
Chlamydia |
|
2 |
| |
|
Chlamydophila abortus (cab) |
1 |
| |
|
Chlamydophila felis (cfe) |
1 |
| |
Cyanobacteria |
|
31 |
| |
|
Acaryochloris marina (amr) |
6 |
| |
|
Anabaena sp. PCC7120 (ana) |
3 |
| |
|
Anabaena variabilis (ava) |
4 |
| |
|
Cyanobacteria Yellowstone A-Prime (cya) |
1 |
| |
|
Prochlorococcus marinus SS120 (pma) |
1 |
| |
|
Prochlorococcus marinus AS9601 (pmb) |
1 |
| |
|
Prochlorococcus marinus NATL1A (pme) |
1 |
| |
|
Prochlorococcus marinus MIT 9301 (pmg) |
1 |
| |
|
Prochlorococcus marinus MIT 9215 (pmh) |
1 |
| |
|
Prochlorococcus marinus MIT9312 (pmi) |
1 |
| |
|
Prochlorococcus marinus MED4 (pmm) |
1 |
| |
|
Synechocystis sp. PCC6803 (syn) |
4 |
| |
|
Trichodesmium erythraeum (ter) |
6 |
| |
Deinococcus-Thermus |
|
5 |
| |
|
Deinococcus geothermalis (dge) |
1 |
| |
|
Deinococcus radiodurans (dra) |
1 |
| |
|
Thermus thermophilus HB27 (tth) |
2 |
| |
|
Thermus thermophilus HB8 (ttj) |
1 |
| |
Firmicutes |
|
147 |
| |
|
Alkaliphilus metalliredigens (amt) |
5 |
| |
|
Alkaliphilus oremlandii (aoe) |
3 |
| |
|
Bacillus anthracis Sterne (bat) |
1 |
| |
|
Bacillus amyloliquefaciens (bay) |
3 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
4 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
3 |
| |
|
Bacillus clausii (bcl) |
1 |
| |
|
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
2 |
| |
|
Bacillus cereus ZK (bcz) |
1 |
| |
|
Bacillus halodurans (bha) |
4 |
| |
|
Bacillus licheniformis DSM13 (bld) |
4 |
| |
|
Bacillus subtilis (bsu) |
4 |
| |
|
Bacillus thuringiensis 97-27 (btk) |
2 |
| |
|
Bacillus thuringiensis Al Hakam (btl) |
1 |
| |
|
Bacillus weihenstephanensis (bwe) |
4 |
| |
|
Clostridium acetobutylicum (cac) |
4 |
| |
|
Clostridium beijerinckii (cbe) |
6 |
| |
|
Clostridium botulinum F (cbf) |
1 |
| |
|
Clostridium botulinum A Hall (cbh) |
1 |
| |
|
Clostridium difficile (cdf) |
5 |
| |
|
Carboxydothermus hydrogenoformans (chy) |
12 |
| |
|
Clostridium kluyveri (ckl) |
3 |
| |
|
Clostridium novyi (cno) |
1 |
| |
|
Clostridium phytofermentans (cpy) |
1 |
| |
|
Caldicellulosiruptor saccharolyticus (csc) |
10 |
| |
|
Clostridium tetani E88 (ctc) |
1 |
| |
|
Clostridium thermocellum (cth) |
5 |
| |
|
Desulfotomaculum reducens (drm) |
6 |
| |
|
Desulfitobacterium hafniense (dsy) |
4 |
| |
|
Geobacillus thermodenitrificans (gtn) |
3 |
| |
|
Listeria innocua (lin) |
2 |
| |
|
Listeria welshimeri SLCC5334 (lwe) |
1 |
| |
|
Mycoplasma gallisepticum (mga) |
1 |
| |
|
Mycoplasma mobile (mmo) |
1 |
| |
|
Moorella thermoacetica (mta) |
4 |
| |
|
Oceanobacillus iheyensis (oih) |
1 |
| |
|
Pediococcus pentosaceus (ppe) |
2 |
| |
|
Pelotomaculum thermopropionicum (pth) |
11 |
| |
|
Staphylococcus aureus Newman (sae) |
2 |
| |
|
Symbiobacterium thermophilum (sth) |
6 |
| |
|
Syntrophomonas wolfei (swo) |
2 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
9 |
| |
Green nonsulfur bacteria |
|
42 |
| |
|
Chloroflexus aurantiacus (cau) |
6 |
| |
|
Dehalococcoides sp. BAV1 (deb) |
5 |
| |
|
Dehalococcoides ethenogenes (det) |
3 |
| |
|
Herpetosiphon aurantiacus (hau) |
10 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
10 |
| |
|
Roseiflexus sp. RS-1 (rrs) |
8 |
| |
Green sulfur bacteria |
|
2 |
| |
|
Chlorobaculum tepidum (cte) |
1 |
| |
|
Prosthecochloris vibrioformis (pvi) |
1 |
| |
Hyperthermophilic bacteria |
|
20 |
| |
|
Aquifex aeolicus (aae) |
5 |
| |
|
Fervidobacterium nodosum (fno) |
3 |
| |
|
Petrotoga mobilis (pmo) |
5 |
| |
|
Thermotoga lettingae (tle) |
3 |
| |
|
Thermotoga maritima (tma) |
1 |
| |
|
Thermosipho melanesiensis (tme) |
1 |
| |
|
Thermotoga petrophila (tpt) |
2 |
| |
Planctomyces |
|
1 |
| |
|
Rhodopirellula baltica (rba) |
1 |
| |
Proteobacteria |
|
160 |
| |
|
Arcobacter butzleri (abu) |
1 |
| |
|
Anaeromyxobacter dehalogenans (ade) |
1 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
1 |
| |
|
Anaeromyxobacter sp. Fw109-5 (afw) |
9 |
| |
|
Agrobacterium tumefaciens C58 (Cereon) (atc) |
1 |
| |
|
Azoarcus sp. BH72 (azo) |
2 |
| |
|
Burkholderia cepacia (bam) |
1 |
| |
|
Bdellovibrio bacteriovorus (bba) |
1 |
| |
|
Bradyrhizobium japonicum (bja) |
2 |
| |
|
Burkholderia thailandensis (bte) |
1 |
| |
|
Burkholderia vietnamiensis (bvi) |
1 |
| |
|
Campylobacter jejuni 81-176 (cjj) |
1 |
| |
|
Colwellia psychrerythraea (cps) |
2 |
| |
|
Chromohalobacter salexigens (csa) |
1 |
| |
|
Chromobacterium violaceum (cvi) |
1 |
| |
|
Delftia acidovorans (dac) |
1 |
| |
|
Dechloromonas aromatica (dar) |
1 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
4 |
| |
|
Dinoroseobacter shibae (dsh) |
3 |
| |
|
Escherichia coli APEC O1 (ecv) |
1 |
| |
|
Francisella tularensis subsp. holarctica FTA (fta) |
1 |
| |
|
Geobacter metallireducens (gme) |
1 |
| |
|
Geobacter sulfurreducens (gsu) |
2 |
| |
|
Geobacter uraniumreducens (gur) |
10 |
| |
|
Herminiimonas arsenicoxydans (har) |
1 |
| |
|
Hahella chejuensis (hch) |
2 |
| |
|
Halorhodospira halophila (hha) |
1 |
| |
|
Hyphomonas neptunium (hne) |
1 |
| |
|
Jannaschia sp. CCS1 (jan) |
2 |
| |
|
Legionella pneumophila Philadelphia 1 (lpn) |
1 |
| |
|
Magnetospirillum magneticum (mag) |
2 |
| |
|
Methylococcus capsulatus (mca) |
2 |
| |
|
Mesorhizobium sp. BNC1 (mes) |
1 |
| |
|
Methylobacterium extorquens (mex) |
3 |
| |
|
Methylobacillus flagellatus (mfa) |
2 |
| |
|
Magnetococcus sp. MC-1 (mgm) |
3 |
| |
|
Minibacterium massiliensis (mms) |
1 |
| |
|
Marinomonas sp. MWYL1 (mmw) |
1 |
| |
|
Myxococcus xanthus (mxa) |
2 |
| |
|
Nitrosomonas eutropha (net) |
2 |
| |
|
Nitrosomonas europaea (neu) |
4 |
| |
|
Nitrobacter hamburgensis (nha) |
1 |
| |
|
Nitratiruptor sp. SB155-2 (nis) |
1 |
| |
|
Nitrosospira multiformis (nmu) |
5 |
| |
|
Nitrosococcus oceani (noc) |
4 |
| |
|
Nitrobacter winogradskyi (nwi) |
1 |
| |
|
Ochrobactrum anthropi (oan) |
2 |
| |
|
Pseudoalteromonas atlantica (pat) |
2 |
| |
|
Pelobacter carbinolicus (pca) |
2 |
| |
|
Psychromonas ingrahamii (pin) |
1 |
| |
|
Parvibaculum lavamentivorans (pla) |
1 |
| |
|
Pseudomonas mendocina (pmy) |
1 |
| |
|
Pelobacter propionicus (ppd) |
3 |
| |
|
Pseudomonas putida KT2440 (ppu) |
1 |
| |
|
Pseudomonas stutzeri (psa) |
1 |
| |
|
Candidatus Pelagibacter ubique (pub) |
1 |
| |
|
Roseobacter denitrificans (rde) |
1 |
| |
|
Ralstonia eutropha JMP134 (reu) |
1 |
| |
|
Rickettsia felis (rfe) |
1 |
| |
|
Rhodoferax ferrireducens (rfr) |
3 |
| |
|
Rhodopseudomonas palustris HaA2 (rpb) |
1 |
| |
|
Syntrophus aciditrophicus (sat) |
4 |
| |
|
Shewanella amazonensis (saz) |
1 |
| |
|
Shewanella baltica OS155 (sbl) |
1 |
| |
|
Sorangium cellulosum (scl) |
6 |
| |
|
Saccharophagus degradans (sde) |
1 |
| |
|
Shewanella denitrificans (sdn) |
1 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
6 |
| |
|
Shewanella sp. ANA-3 (shn) |
2 |
| |
|
Sinorhizobium medicae (smd) |
1 |
| |
|
Serratia proteamaculans (spe) |
2 |
| |
|
Shewanella pealeana (spl) |
4 |
| |
|
Salmonella enterica serovar Paratyphi B (spq) |
1 |
| |
|
Shewanella sediminis (sse) |
1 |
| |
|
Sulfurovum sp. NBC37-1 (sun) |
2 |
| |
|
Thiomicrospira crunogena (tcx) |
2 |
| |
|
Thiomicrospira denitrificans (tdn) |
3 |
| |
|
Vibrio fischeri (vfi) |
1 |
| |
|
Vibrio parahaemolyticus (vpa) |
1 |
| |
|
Vibrio vulnificus CMCP6 (vvu) |
1 |
| |
|
Wigglesworthia glossinidia (wbr) |
1 |
| |
|
Wolinella succinogenes (wsu) |
1 |
| |
|
Xanthomonas campestris pv. campestris 8004 (xcb) |
1 |
| |
|
Xylella fastidiosa 9a5c (xfa) |
1 |
| |
Spirochete |
|
8 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
2 |
| |
|
Leptospira interrogans serovar Copenhageni (lic) |
4 |
| |
|
Leptospira interrogans serovar lai (lil) |
1 |
| |
|
Treponema denticola (tde) |
1 |
| Eukaryotes |
|
|
53 |
| |
Animals |
|
16 |
| |
|
Bos taurus (cow) (bta) |
1 |
| |
|
Canis familiaris (dog) (cfa) |
2 |
| |
|
Danio rerio (zebrafish) (dre) |
1 |
| |
|
Macaca mulatta (rhesus monkey) (mcc) |
1 |
| |
|
Monodelphis domestica (opossum) (mdo) |
2 |
| |
|
Mus musculus (mouse) (mmu) |
1 |
| |
|
Nematostella vectensis (sea anemone) (nve) |
2 |
| |
|
Rattus norvegicus (rat) (rno) |
2 |
| |
|
Strongylocentrotus purpuratus (purple sea urchin) (spu) |
4 |
| |
Fungi |
|
6 |
| |
|
Aspergillus fumigatus (afm) |
1 |
| |
|
Aspergillus oryzae (aor) |
1 |
| |
|
Candida albicans (cal) |
1 |
| |
|
Cryptococcus neoformans JEC21 (cne) |
1 |
| |
|
Encephalitozoon cuniculi (ecu) |
1 |
| |
|
Schizosaccharomyces pombe (spo) |
1 |
| |
Plants |
|
5 |
| |
|
Arabidopsis thaliana (thale cress) (ath) |
1 |
| |
|
Cyanidioschyzon merolae (cme) |
2 |
| |
|
Ostreococcus lucimarinus (olu) |
1 |
| |
|
Oryza sativa japonica (Japanese rice) (osa) |
1 |
| |
Protists |
|
26 |
| |
|
Cryptosporidium hominis (cho) |
2 |
| |
|
Dictyostelium discoideum (ddi) |
2 |
| |
|
Entamoeba histolytica (ehi) |
2 |
| |
|
Plasmodium falciparum (pfa) |
2 |
| |
|
Plasmodium yoelii (pyo) |
1 |
| |
|
Trypanosoma cruzi (tcr) |
2 |
| |
|
Tetrahymena thermophila (tet) |
2 |
| |
|
Theileria parva (tpv) |
1 |
| |
|
Trichomonas vaginalis (tva) |
12 |
| NULL |
|
|
448 |
| TOTAL |
|
|
1799 |
![[space]](http://homer.ornl.gov/compbio/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}