Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 3 |
| Arg | 5 |
| Asn | 1 |
| Asp | 1 |
| Cys | 1 |
| Gln | 2 |
| Glu | 2 |
| Gly | 3 |
| His | 1 |
| Ile | 1 |
| Leu | 5 |
| Lys | 2 |
| Met | 3 |
| Phe | 1 |
| Pro | 6 |
| Pseudo | 1 |
| Ser | 4 |
| Thr | 3 |
| Trp | 1 |
| Tyr | 1 |
| Undet | 4 |
| Val | 4 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig28 | 49 | 668290 ..668215 | 0..0 | 84.51 | 67.80 |
| Ala | GGC | Contig28 | 1 | 188039 ..188114 | 0..0 | 87.23 | 69.29 |
| Ala | TGC | Contig28 | 6 | 725431 ..725506 | 0..0 | 86.35 | 74.13 |
| Arg | ACG | Contig28 | 25 | 4078903..4078979 | 0..0 | 90.81 | 69.56 |
| Arg | CCG | Contig28 | 27 | 4401473..4401397 | 0..0 | 86.37 | 55.76 |
| Arg | CCT | Contig28 | 3 | 566183 ..566259 | 0..0 | 86.67 | 61.83 |
| Arg | TCG | Contig28 | 16 | 2414309..2414385 | 0..0 | 87.99 | 64.26 |
| Arg | TCT | Contig28 | 14 | 2317498..2317574 | 0..0 | 81.57 | 60.25 |
| Asn | GTT | Contig28 | 45 | 1988773..1988699 | 0..0 | 88.68 | 63.28 |
| Asp | GTC | Contig28 | 41 | 2471687..2471611 | 0..0 | 97.73 | 81.51 |
| Cys | GCA | Contig28 | 44 | 2285734..2285661 | 0..0 | 68.65 | 38.69 |
| Gln | CTG | Contig28 | 48 | 1713546..1713473 | 0..0 | 70.05 | 39.59 |
| Gln | TTG | Contig28 | 8 | 865255 ..865329 | 0..0 | 69.86 | 41.15 |
| Glu | CTC | Contig28 | 34 | 3149095..3149021 | 0..0 | 68.86 | 42.27 |
| Glu | TTC | Contig28 | 15 | 2386826..2386900 | 0..0 | 60.15 | 31.71 |
| Gly | CCC | Contig28 | 53 | 236931 ..236858 | 0..0 | 80.62 | 58.67 |
| Gly | GCC | Contig28 | 55 | 95309 ..95235 | 0..0 | 86.85 | 67.18 |
| Gly | TCC | Contig28 | 38 | 2750528..2750455 | 0..0 | 82.78 | 66.02 |
| His | GTG | Contig28 | 10 | 1412851..1412927 | 0..0 | 90.83 | 66.86 |
| Ile | GAT | Contig28 | 5 | 725322 ..725398 | 0..0 | 93.43 | 73.71 |
| Leu | CAA | Contig28 | 23 | 3844879..3844963 | 0..0 | 77.17 | 51.28 |
| Leu | CAG | Contig28 | 54 | 202733 ..202647 | 0..0 | 73.71 | 48.71 |
| Leu | GAG | Contig28 | 42 | 2402450..2402366 | 0..0 | 67.55 | 39.24 |
| Leu | TAA | Contig28 | 36 | 2845629..2845541 | 0..0 | 80.23 | 49.22 |
| Leu | TAG | Contig28 | 39 | 2482912..2482828 | 0..0 | 77.53 | 51.95 |
| Lys | CTT | Contig28 | 35 | 2990028..2989953 | 0..0 | 98.50 | 76.17 |
| Lys | TTT | Contig28 | 46 | 1978669..1978594 | 0..0 | 90.38 | 68.53 |
| Met | CAT | Contig28 | 31 | 3786830..3786754 | 0..0 | 83.88 | 55.32 |
| Met | CAT | Contig28 | 32 | 3702698..3702623 | 0..0 | 82.55 | 63.79 |
| Met | CAT | Contig28 | 7 | 771213 ..771289 | 0..0 | 91.88 | 75.73 |
| Phe | GAA | Contig28 | 2 | 324825 ..324900 | 0..0 | 88.73 | 66.87 |
| Pro | CGG | Contig28 | 26 | 4391773..4391849 | 0..0 | 83.61 | 57.94 |
| Pro | CGG | Contig28 | 28 | 4377604..4377528 | 0..0 | 86.36 | 60.13 |
| Pro | CGG | Contig28 | 30 | 4137208..4137138 | 0..0 | 31.74 | 22.34 |
| Pro | CGG | Contig28 | 50 | 660171 ..660095 | 0..0 | 84.00 | 55.70 |
| Pro | GGG | Contig28 | 12 | 1792083..1792160 | 0..0 | 81.40 | 53.97 |
| Pro | TGG | Contig28 | 43 | 2382777..2382701 | 0..0 | 79.83 | 55.97 |
| Pseudo | TGC | Contig28 | 21 | 3696554..3696631 | 0..0 | 21.61 | -5.68 |
| Ser | CGA | Contig28 | 51 | 567975 ..567886 | 0..0 | 76.06 | 44.47 |
| Ser | GCT | Contig28 | 17 | 2521326..2521419 | 0..0 | 74.74 | 48.93 |
| Ser | GGA | Contig28 | 24 | 3982481..3982570 | 0..0 | 81.68 | 52.08 |
| Ser | TGA | Contig28 | 13 | 2240909..2240998 | 0..0 | 83.46 | 49.96 |
| Thr | CGT | Contig28 | 4 | 627348 ..627423 | 0..0 | 92.11 | 61.66 |
| Thr | GGT | Contig28 | 52 | 315739 ..315665 | 0..0 | 85.75 | 61.42 |
| Thr | TGT | Contig28 | 18 | 2765240..2765314 | 0..0 | 83.07 | 58.45 |
| Trp | CCA | Contig28 | 11 | 1731511..1731586 | 0..0 | 91.15 | 66.67 |
| Tyr | GTA | Contig28 | 37 | 2762225..2762140 | 0..0 | 74.36 | 42.73 |
| Undet | ??? | Contig28 | 19 | 3167952..3168026 | 0..0 | 38.71 | 13.28 |
| Undet | ??? | Contig28 | 20 | 3168513..3168587 | 0..0 | 32.76 | 13.16 |
| Undet | ??? | Contig28 | 33 | 3168408..3168336 | 0..0 | 40.59 | 15.11 |
| Undet | ??? | Contig28 | 47 | 1796694..1796622 | 0..0 | 47.51 | 18.97 |
| Val | CAC | Contig28 | 22 | 3722103..3722177 | 0..0 | 81.20 | 58.80 |
| Val | GAC | Contig28 | 29 | 4374005..4373936 | 0..0 | 35.86 | 20.45 |
| Val | GAC | Contig28 | 9 | 1295042..1295116 | 0..0 | 88.73 | 66.89 |
| Val | TAC | Contig28 | 40 | 2475681..2475605 | 0..0 | 88.53 | 62.05 |
tRNA Models
Contig28.trna1 (188039-188114) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (188072-188074) Score: 87.23
HMM Sc=69.29 Sec struct Sc=17.94
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna2 (324825-324900) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (324858-324860) Score: 88.73
HMM Sc=66.87 Sec struct Sc=21.86
* | * | * | * | * | * | * | *
Seq: GCCCAGGTAGCTCAGTTGGTAGAGCATGCGACTGAAAATCGCAGTGtCGGTGGTTCGATCCCGCCCCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna3 (566183-566259) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (566217-566219) Score: 86.67
HMM Sc=61.83 Sec struct Sc=24.84
* | * | * | * | * | * | * | *
Seq: GTCCCGGTAGCTCAGCTGGAtAGAGCACAGGTTTCCTAAACCTGGGGtCAGGGGTTCGACTCCCTTCCGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna4 (627348-627423) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (627381-627383) Score: 92.11
HMM Sc=61.66 Sec struct Sc=30.45
* | * | * | * | * | * | * | *
Seq: GCCGCTTTAGCTCAGTTGGTAGAGCACATCATTCGTAATGATGGGGtCAGGTGTTCGAGTCACCTAAGCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna5 (725322-725398) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (725356-725358) Score: 93.43
HMM Sc=73.71 Sec struct Sc=19.72
* | * | * | * | * | * | * | *
Seq: GGGCTTGTAGCTCAGTTGGTtAGAGCGCGCGCTTGATAAGCGTGAGGtCGGAAGTTCAAGTCTTCCCAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna6 (725431-725506) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (725464-725466) Score: 86.35
HMM Sc=74.13 Sec struct Sc=12.22
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTGCTTTGCAAGCATGAGGtCGTCGGTTCGATCCCGTCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig28.trna7 (771213-771289) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (771247-771249) Score: 91.88
HMM Sc=75.73 Sec struct Sc=16.15
* | * | * | * | * | * | * | *
Seq: GGCGAGGTAGCTCAGCTGGTtAGAGCACGGGAATCATAATCCTGGGGtCGGGGGTTCGAGTCCCTCCCTCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna8 (865255-865329) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (865287-865289) Score: 69.86
HMM Sc=41.15 Sec struct Sc=28.71
* | * | * | * | * | * | * |
Seq: TGGGGCGTAGCCAAGCGGTAAGGCAGGGGATTTTGATTCCCCCATgCGGAGGTTCGATCCCTCCCGCCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna9 (1295042-1295116) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (1295074-1295076) Score: 88.73
HMM Sc=66.89 Sec struct Sc=21.84
* | * | * | * | * | * | * |
Seq: GGGCGCGTAGCTCAGCGGGAGAGCACTACCTTGACATGGTAGGGGtCACAGGTTCGATCCCTGTCGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna10 (1412851-1412927) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (1412885-1412887) Score: 90.83
HMM Sc=66.86 Sec struct Sc=23.97
* | * | * | * | * | * | * | *
Seq: GCAGTTGTAGCTCAGTTGGTtAGAGCGCCTGTCTGTGGAACAGGAGGtCGGTGGTTCGAGCCCACCCAACTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna11 (1731511-1731586) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (1731544-1731546) Score: 91.15
HMM Sc=66.67 Sec struct Sc=24.48
* | * | * | * | * | * | * | *
Seq: AGGAGTGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAACCGGGGGtCGCAGGTTCGAGCCCTGCCACTCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna12 (1792083-1792160) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (1792118-1792120) Score: 81.40
HMM Sc=53.97 Sec struct Sc=27.43
* | * | * | * | * | * | * | *
Seq: CGGAGCGTAGCGCAGCCcGGTtAGCGCACTAGTCTGGGAGACTAGGGGtCGGAGGTTCAAATCCTCTCGCTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna13 (2240909-2240998) Length: 90 bp
Type: Ser Anticodon: TGA at 35-37 (2240943-2240945) Score: 83.46
HMM Sc=49.96 Sec struct Sc=33.50
* | * | * | * | * | * | * | * | *
Seq: GGAAGGGTGGCCGAGTGGTttAAGGCACCGGTCTTGAAAACCGGCGTGGGTGCAAGCCCACCGTGGGTTCGAATCCCACCCCTTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig28.trna14 (2317498-2317574) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2317532-2317534) Score: 81.57
HMM Sc=60.25 Sec struct Sc=21.32
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGCTCAACTGGAtAGAGTAGCGGATTTCTACTCCGCGGGtTGCAGGTTCGAATCCTGCCGGGATCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna15 (2386826-2386900) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (2386859-2386861) Score: 60.15
HMM Sc=31.71 Sec struct Sc=28.44
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTATCGGTtAGGACGCCACCCTTTCACGGTGGAGAGAGCGGTTCGATTCCGCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig28.trna16 (2414309-2414385) Length: 77 bp
Type: Arg Anticodon: TCG at 35-37 (2414343-2414345) Score: 87.99
HMM Sc=64.26 Sec struct Sc=23.73
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAGCTGGAtAGAGCATCGGATTTCGATTCCGAGGGtCGGGAGTTCGAATCTCTCCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna17 (2521326-2521419) Length: 94 bp
Type: Ser Anticodon: GCT at 35-37 (2521360-2521362) Score: 74.74
HMM Sc=48.93 Sec struct Sc=25.81
* | * | * | * | * | * | * | * | * |
Seq: GGAGCTGTGGCCGAGTGGCtgAAGGCGGCGGTTTGCTAAACCGTTATAGGGTTGTAAAGCCCTATCGAGGGTTCGAATCCCTCCGGCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>>>....<<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig28.trna18 (2765240-2765314) Length: 75 bp
Type: Thr Anticodon: TGT at 33-35 (2765272-2765274) Score: 83.07
HMM Sc=58.45 Sec struct Sc=24.62
* | * | * | * | * | * | * |
Seq: GCCGGCGTAGCACAGCGGTAGTGCAGCGGTTTTGTAAACCGAAGGtCGGGAGTTCGATCCTCTCCGCCGGCACCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig28.trna19 (3167952-3168026) Length: 75 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 38.71
HMM Sc=13.28 Sec struct Sc=25.43
* | * | * | * | * | * | * |
Seq: GGCCCGGTGGCGGAAGTtCGACGCGGGAGCTgTGCAAAGCTTTTTATCCTGGTTCAAGTCCAGGCCGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>........<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig28.trna20 (3168513-3168587) Length: 75 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 32.76
HMM Sc=13.16 Sec struct Sc=19.60
* | * | * | * | * | * | * |
Seq: GGCCCGGTGGCGGAAGTtCGACGCGGGAGCTgTGCAAAGCTTTTTATCCTGGTTCAAGTCCAGGCTGGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>........<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig28.trna21 (3696554-3696631) Length: 78 bp
Type: Ala Anticodon: TGC at 34-36 (3696587-3696589) Score: 21.61
Possible pseudogene: HMM Sc=-5.68 Sec struct Sc=27.29
* | * | * | * | * | * | * | *
Seq: GGGCCGATGGCAGAACAGCAATACGGAGgCCCTTGCACGGtCTCAAAtCCTGGGTGCGAGTCCCAGgTCGGTCCCCCA
Str: >>>>>>>..>.>.........<.<.>>>.>>.......<<.<<<.....>>>>>.......<<<<<.<<<<<<<....
Contig28.trna22 (3722103-3722177) Length: 75 bp
Type: Val Anticodon: CAC at 33-35 (3722135-3722137) Score: 81.20
HMM Sc=58.80 Sec struct Sc=22.40
* | * | * | * | * | * | * |
Seq: GGGCGCATAGCTCAGCGGGAGAGCGTTCCCTTCACACGGGAGAGGtCCAAGGTTCGATCCCTTGTGCGCCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna23 (3844879-3844963) Length: 85 bp
Type: Leu Anticodon: CAA at 35-37 (3844913-3844915) Score: 77.17
HMM Sc=51.28 Sec struct Sc=25.89
* | * | * | * | * | * | * | * |
Seq: GCCCCTGTGGCGGAACTGGTaGACGCGCTCGACTCAAAATCGAGTTCCGCAAGGAGTGCTGGTTCGATTCCGGCCAGGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig28.trna24 (3982481-3982570) Length: 90 bp
Type: Ser Anticodon: GGA at 35-37 (3982515-3982517) Score: 81.68
HMM Sc=52.08 Sec struct Sc=29.60
* | * | * | * | * | * | * | * | *
Seq: GGAGAGATGGCCGAGTGGCttAAGGCGCACGCTTGGAAAGCGTGTGTGCGGGAAACCGTACCGTGGGTTCGAATCCCACTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig28.trna25 (4078903-4078979) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (4078937-4078939) Score: 90.81
HMM Sc=69.56 Sec struct Sc=21.25
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCTGGAtAGAGCACCAGACTACGAATCTGGGGGtCAGGAGTTCGAATCTCTTCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna26 (4391773-4391849) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (4391807-4391809) Score: 83.61
HMM Sc=57.94 Sec struct Sc=25.67
* | * | * | * | * | * | * | *
Seq: CGGGGTATAGCGCAGTCtGGTAGCGCGGAAGTTTCGGGAACTTCAGGtCGCAGGTTCAAATCCTGCTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna27 (4401473-4401397) Length: 77 bp
Type: Arg Anticodon: CCG at 35-37 (4401439-4401437) Score: 86.37
HMM Sc=55.76 Sec struct Sc=30.61
* | * | * | * | * | * | * | *
Seq: GCACCCGTAGCTCAGCTGGAtAGAGCGTTGCCCTCCGAAGGCAAAGGtCACACGTTCGAATCGTGTCGGGTGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna28 (4377604-4377528) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (4377570-4377568) Score: 86.36
HMM Sc=60.13 Sec struct Sc=26.23
* | * | * | * | * | * | * | *
Seq: CGGAGTGTGGCTCAGCCcGGTAGAGCACTGCGTTCGGGACGCAGGGGtCGCAGGTTCGAATCCTGCCACTCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna29 (4374005-4373936) Length: 70 bp
Type: Val Anticodon: GAC at 28-30 (4373978-4373976) Score: 35.86
HMM Sc=20.45 Sec struct Sc=15.41
* | * | * | * | * | * | *
Seq: TACCGTGAAGCATTGGAACGTCAGGCTGACAACCTGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: >.>.>.>..>........<.>>>>>.......<<<<<.....>>>>>.......<<<<<<.<.<.<....
Contig28.trna30 (4137208-4137138) Length: 71 bp
Type: Pro Anticodon: CGG at 29-31 (4137180-4137178) Score: 31.74
HMM Sc=22.34 Sec struct Sc=9.40
* | * | * | * | * | * | * |
Seq: CGGGGAGTAGAGATCCGGCCGGTGCGTTCGGGACGCAGGGGtCGCAGGTTCGAATCCTGCCACTCCGACCA
Str: >>>>>.>..>.........<..>>>>.......<<<<......>>>>>.......<<<<<<.<<<<<....
Contig28.trna31 (3786830-3786754) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3786796-3786794) Score: 83.88
HMM Sc=55.32 Sec struct Sc=28.56
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGCCcGGTAGCTCGTCAGGCTCATAACCTGAAGGtCATAGGTTCAAATCCTATCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig28.trna32 (3702698-3702623) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (3702665-3702663) Score: 82.55
HMM Sc=63.79 Sec struct Sc=18.76
* | * | * | * | * | * | * | *
Seq: GGGCCTGTAGCTCAATGGTtAGAGCCGGCCGCTCATAACGGTCTGGtTGGGGGTTCGAGTCCCTCCGGGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna33 (3168408-3168336) Length: 73 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 40.59
HMM Sc=15.11 Sec struct Sc=25.48
* | * | * | * | * | * | * |
Seq: GCGGGTTTAGCTTAGTGGCAAAGCAGCGGCTTCCAGGTCGCAGACCGATCTTCAATTCATCGAATCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>......<<<<<....>>>>.........<<<<<<<<<<<....
Contig28.trna34 (3149095-3149021) Length: 75 bp
Type: Glu Anticodon: CTC at 34-36 (3149062-3149060) Score: 68.86
HMM Sc=42.27 Sec struct Sc=26.59
* | * | * | * | * | * | * |
Seq: GCTCCCTTCGTCTAGCGGTtAGGACGCGGCCCTCTCAAGGCTGAAACAGGGGTTCGATTCCCCTAGGGAGCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig28.trna35 (2990028-2989953) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2989995-2989993) Score: 98.50
HMM Sc=76.17 Sec struct Sc=22.33
* | * | * | * | * | * | * | *
Seq: GGGCGATTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGtCGTAGGTTCGAGCCCTACATCGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna36 (2845629-2845541) Length: 89 bp
Type: Leu Anticodon: TAA at 35-37 (2845595-2845593) Score: 80.23
HMM Sc=49.22 Sec struct Sc=31.01
* | * | * | * | * | * | * | * | *
Seq: GCGGGCATGGCGGAATCGGTaGACGCAAGGGACTTAAAATCCCTCGGCTCGTGAGAGCTgTGCCGGTTCGAGTCCGGCTGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>.><.<<<<...>>>>>.......<<<<<<<<<<<<....
Contig28.trna37 (2762225-2762140) Length: 86 bp
Type: Tyr Anticodon: GTA at 35-37 (2762191-2762189) Score: 74.36
HMM Sc=42.73 Sec struct Sc=31.63
* | * | * | * | * | * | * | * | *
Seq: GGGGGAGTGtCCCGAGTGGCaAAGGGAGCTGACTGTAAATCAGCCGCCTCATGGCTtCGCAGGTTCGAGTCCTGCCTCCCCCACCA
Str: >>>>>>>...>>>..........<<<.>>>>>.......<<<<<.>>>....<<<...>>>>>.......<<<<<<<<<<<<....
Contig28.trna38 (2750528-2750455) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (2750496-2750494) Score: 82.78
HMM Sc=66.02 Sec struct Sc=16.76
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAATGGTAGAGCAGCAGCCTTCCAAGCTGAATACGAGGGTTCGATTCCCTCCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna39 (2482912-2482828) Length: 85 bp
Type: Leu Anticodon: TAG at 35-37 (2482878-2482876) Score: 77.53
HMM Sc=51.95 Sec struct Sc=25.58
* | * | * | * | * | * | * | * |
Seq: GCGGGCGTGGCGGAATTGGTaGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCGAGTCCCTCCGCCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....
Contig28.trna40 (2475681-2475605) Length: 77 bp
Type: Val Anticodon: TAC at 35-37 (2475647-2475645) Score: 88.53
HMM Sc=62.05 Sec struct Sc=26.48
* | * | * | * | * | * | * | *
Seq: GGGCGGCTAGCTCAGCTGGTtAGAGCATCTCGTTTACACCGAGAGGGtCGGGAGTTCGAATCTCTCGCCGCCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna41 (2471687-2471611) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2471653-2471651) Score: 97.73
HMM Sc=81.51 Sec struct Sc=16.22
* | * | * | * | * | * | * | *
Seq: GCGGGAGTAGCTCAGTTGGTtAGAGCGCCGCCCTGTCACGGCGGAGGtCGCGGGTTCGAGTCCCGTCTCTCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna42 (2402450-2402366) Length: 85 bp
Type: Leu Anticodon: GAG at 35-37 (2402416-2402414) Score: 67.55
HMM Sc=39.24 Sec struct Sc=28.31
* | * | * | * | * | * | * | * |
Seq: GCGCTCGTGGCGGAATTGGTaGACGCGCTGCCTTGAGGTGGCAGTGAGTAACATCGTGGGGGTTCGAGTCCCTCCGAGCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>......<<..>>>>>.......<<<<<<<<<<<<....
Contig28.trna43 (2382777-2382701) Length: 77 bp
Type: Pro Anticodon: TGG at 35-37 (2382743-2382741) Score: 79.83
HMM Sc=55.97 Sec struct Sc=23.86
* | * | * | * | * | * | * | *
Seq: CGGGGTATAGCGCAGCCtGGTAGCGCGGCAGTTTTGGGTACTGCAGGtCGTTGGTTCGAATCCAGCTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna44 (2285734-2285661) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (2285702-2285700) Score: 68.65
HMM Sc=38.69 Sec struct Sc=29.96
* | * | * | * | * | * | * |
Seq: GGCCACGTGGCGGAGTGGTTACGCAACGGTCTGCAAAACCGTGTACTCCGGTTCAATTCCGGACGTGGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig28.trna45 (1988773-1988699) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (1988741-1988739) Score: 88.68
HMM Sc=63.28 Sec struct Sc=25.40
* | * | * | * | * | * | * |
Seq: TCCCTGGTAGCTCAGCGGTAGAGCATTCGACTGTTAATCGAATGGtCGCTGGTTCGAATCCAGCCCGGGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna46 (1978669-1978594) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (1978636-1978634) Score: 90.38
HMM Sc=68.53 Sec struct Sc=21.85
* | * | * | * | * | * | * | *
Seq: GAGCGCGTAGCTCAGGCGGTAGAGCACGTGACTTTTAATCATGGGGtCGTGGGTTCGAGTCCCACCGCGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna47 (1796694-1796622) Length: 73 bp
Type: Undet Anticodon: ??? at 0-0 (0-0) Score: 47.51
HMM Sc=18.97 Sec struct Sc=28.54
* | * | * | * | * | * | * |
Seq: GCGGATTTAGCTCAGCGGCAAAGCGGCGTGgTTCGCGACGCAGGTCCATGTTCGACTCATGGAATCCGCACCA
Str: >>>>>>>..>>>.........<<<.>>>..........<<<....>>>>>.......<<<<<<<<<<<<....
Contig28.trna48 (1713546-1713473) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (1713514-1713512) Score: 70.05
HMM Sc=39.59 Sec struct Sc=30.46
* | * | * | * | * | * | * |
Seq: TGGGGAATGGTGTAACGGTAGCACAACAGACTCTGACTCTGTTTGTCTAGGTTCGAATCCTAGTTCCCCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig28.trna49 (668290-668215) Length: 76 bp
Type: Ala Anticodon: CGC at 34-36 (668257-668255) Score: 84.51
HMM Sc=67.80 Sec struct Sc=16.71
* | * | * | * | * | * | * | *
Seq: GGGGCCATAGCTCAGCTGGGAGAGCGCGTCGTTCGCAATGACGAGGtCGGCGGTTCGATCCCGCCTGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna50 (660171-660095) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (660137-660135) Score: 84.00
HMM Sc=55.70 Sec struct Sc=28.30
* | * | * | * | * | * | * | *
Seq: CGGGGCATAGCGCAGTCtGGCAGCGCGGAAGTTTCGGGAACTTCAGGtCGCAGGTTCAAATCCTGCTGCCCCGACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna51 (567975-567886) Length: 90 bp
Type: Ser Anticodon: CGA at 35-37 (567941-567939) Score: 76.06
HMM Sc=44.47 Sec struct Sc=31.59
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTGGCAGAGTGGTcgAATGCACCGCACTCGAAATGCGGCATAGGTGCAAGCCTATCGGGGGTTCGAATCCCTCCCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig28.trna52 (315739-315665) Length: 75 bp
Type: Thr Anticodon: GGT at 33-35 (315707-315705) Score: 85.75
HMM Sc=61.42 Sec struct Sc=24.33
* | * | * | * | * | * | * |
Seq: GCTGCCGTAGCTCAGTGGTAGAGCACTCCATTGGTAATGGAGAGGtCGACAGTTCAATCCTGTCTGGCAGCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig28.trna53 (236931-236858) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (236899-236897) Score: 80.62
HMM Sc=58.67 Sec struct Sc=21.95
* | * | * | * | * | * | * |
Seq: GCGGGCGTAGTTCAATGGTAGAACGGCAGCTTCCCAAGCTGCATACGAGGGTTCGATTCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig28.trna54 (202733-202647) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (202699-202697) Score: 73.71
HMM Sc=48.71 Sec struct Sc=25.00
* | * | * | * | * | * | * | * | *
Seq: GCCCAGGTGGCGGAATTGGTaGACGCGCTGGCTTCAGGTGCCAGTGGCTGCAAGGTCGTGAAGGTTCGAGTCCTTTCCTGGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig28.trna55 (95309-95235) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (95277-95275) Score: 86.85
HMM Sc=67.18 Sec struct Sc=19.67
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGCTCAGGGGTAGAGCACGACCTTGCCAAGGTCGGGGtCGAGGGTTCGAATCCCTTCGCCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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