Links to rRNA BLAST

• 16S rRNA
• 23S rRNA

Sequences found with RNAmmer 1.2

Lagesen K, Hallin PF, Rødland E, Stærfeldt HH, Rognes T Ussery DW, "RNammer: consistent annotation of rRNA genes in genomic sequences," Nucleic Acids Res. 2007 Apr 22

##gff-version2
 ##source-version RNAmmer-1.2
 ##date 2008-09-25
 ##Type DNA
 # seqname           source                      feature     start      end   score   +/-  frame  attribute
 # ---------------------------------------------------------------------------------------------------------
 Contig28	RNAmmer-1.2	rRNA	728861	728974	92.1	+	.	5s_rRNA	
 Contig28	RNAmmer-1.2	rRNA	725922	728775	3284.7	+	.	23s_rRNA	
 Contig28	RNAmmer-1.2	rRNA	723636	725112	1951.7	+	.	16s_rRNA	
 # ---------------------------------------------------------------------------------------------------------

>rRNA_Contig28_728861-728974_DIR+ /molecule=5s_rRNA /score=92.1
 TGGTGGTTCTAGCGAGGAGCTTGAACCCGATCCCATCCCGAACTCGGCCGTTAAACTCCT
 CAGCGCCAATGGTACTATGGCTTAAGCCCTGGGAGAGTAGGTCGCTGCCAGGCC
 >rRNA_Contig28_725922-728775_DIR+ /molecule=23s_rRNA /score=3284.7
 TCAAGTGCCTTAAGGGTGTTCGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTAC
 TACGCTGCGATAAGCCGTGGGGAGCTGCGAAGAAGCTTTGATCCACGGATTTCCGAATGG
 GGAAACCCACCTTCGATAGCCGGAACTCCAAGATCTTGTATCTTGGTGTTCAAGTTATTC
 TGCTTGCAGGATACTGGAAGCCAGACCGCGAGGTTTTGGATTTCCGGTTATCAAGCGAAG
 GTATGAAACCTCTGAATACATAGGAGGTTTTAAGCAAACCCAGGGAACTGAAACATCTAA
 GTACCTGGAGGAAAGGACATCAACAGAGACTCCGGTAGTAGTGGCGAGCGAATCCGGACC
 AGGCCAGTCATGAATGTGAGACAACCAGAACCTGTCAGGAAAGCAGGGCCTCAGAGGGTG
 ATAGCCCCGTATGGGTAATGCAAACATTCATGCTCGAGTAAGGCGGGACACGTGAAATCC
 TGTCTGAACATGGGGGGACCACCCTCCAAGCCTAAGTACTCCTCAGCGACCGATAGTGAA
 CCAGTACCGTGAGGGAAAGGTGAAAAGCACCCCGACGAGGGGAGTGAAATAGACCTGAAA
 CCGGACACTTACAAACAGACGGAGCCCAAGATTTGTTCTGGGTGACGTCGTACCTTTTGT
 ATTATGGGCCAGCGACTTAATTTAACGAGCAAGCTTAAACCGATAGGTGTAGGCGTAGCG
 AAAGCGAGTCTGAATAGGGCGTCAAGTTCGTTGGATTAGACCCGAAACCTAGTGATCTAG
 CCATGAGCAGGTTGAAGGTGAGGTAACACTCACTGGAGGACCGAACGGGTGTCTGTTGAA
 AAAGACTCCGATGACTTGTGGTTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGT
 TCTCCGCGAAAGATATTTAGGTATCGCCTCGCGTGAATGCTTGGGGGGGTAGAGCACTGG
 ATGGGCTAGGGGGACTTACCGTCTTACCAAACCCAACCAAACTCCGAATACCCCAAAGCA
 ATGCGCGGGAGTCACACGGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCGGAC
 CTACAGCTAAGGCCCCTAATTCGTGGCTAAGTGGGAAAGGATGTGGAAATCCCAAAACAA
 CCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTA
 AATAAGGGTTTCTGCGCCGAAGATGTAACGGGGCTCAAGCCACGAGCCGAAGCTTAGGAT
 GCATATCGCAAGATATGCGTGGTAGCGGAGCGTTCTGTAAGCCTGCGAAGGGCGACCCGT
 GAGGGCGCCTGGAGGTATCAGAAGTGCGAATGCTGGCATGAGTAACGACAAACACTGTGA
 AAGACAGTGTCGCCGAAAGTCCAAGGGTTCCTGCGTAAAGTTAATCTCCGCAGGGTTAGC
 CGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAATCACGTGAATATTCGTGAGC
 CAGTGGATGGTGACGAATCCCGTATGTTGTTCGACCTTATTGGATTGGTCGGGCCTCGAA
 GGGGTTCCAGGAAATAGCCTCCACATCAGATCGTACCCGAAACCGACACAGGTGGACTGG
 TAGAGTATACCAAGGCGCTTGAGAGAACGATGTTGAAGGAACTCGGCAATTTACCTCCGT
 AACTTCGGAATAAGGAGGACCTCTGTCCGCGCAAGCGGTCAGGGGTGGCACAGACCAGGG
 GGTGGCAACTGTTTAACAAAAACACAGGGCTCTGCGAAATCGCAAGATGACGTATAGGGT
 CTGACGCCTGCCCGGTGCCGGAAGGTTAAAAGGAGAGGTGCAAGCCTTGAATTGAAGCCC
 CGGTAAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAG
 TTCCGACCTGCACGAATGGCGTAATGACTTCCCCGCTGTCTCCAACATCGACTCAGTGAA
 ATTGAATTCCCCGTGAAGATGCGGGGTTCCTGCGGTCAGACGGAAAGACCCCGTGCACCT
 TTACTGTAGCTTTGCGCTGGTATTCGTGACTGTTTGTGTAGAATAGGTGGTAGACTTTGA
 AGCTCGGGCGCCAGCTCGGGTGGAGTCGCAATGTGAAATACCACCCTAATGGTTATGGGT
 ATCTAACCGCATCCCCTTAGCGGGGATCGGGACAGCGCATGGTGGGCAGTTTGACTGGGG
 CGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCGAAGGTAGGCTCAGAACGGTCGGAAATC
 GTTCGTCGAGTATAATGGCAAAAGCCTGCCTGACTGCGAGACCAACAAGTCGAGCAGAGA
 CGAAAGTCGGTCATAGTGATCCGGTGGTCCCGTGTGGATGGGCCATCGCTCAACGGATAA
 AAGGTACGCCGGGGATAACAGGCTGATGACCCCCAAGAGTCCATATCGACGGGGTCGTTT
 GGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGAAGGTCCCAAGGGTTCGGCTG
 TTCGCCGATTAAAGTGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCCT
 ATCTGCCGTGGGTGTCGGAATATTGAGAGGATTTGTCCCTAGTACGAGAGGACCGGGATG
 AACGTACCTCTGGTGGAGCTGTTGTCGCGCCAGCGGCAGTGCAGCATAGCTATGTACGGA
 CGGGATAACCGCTGAAAGCATCTAAGCGGGAAACCTACCTCAAAACGAGTATTCCCTTGA
 GAACCGTGGAAGACGACCACGTTGATAGGCCGGGTGTGGAAGTGCGGCAACGCATGTAGC
 TTACCGGTACTAATCGTTCGATTGGCTTGATTGC
 >rRNA_Contig28_723636-725112_DIR+ /molecule=16s_rRNA /score=1951.7
 AGAGTTTGATCCTGGCTCAGAGCGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAAC
 GGGCGTAGCAATACGTCAGTGGCAGACGGGTGAGTAACACGTGGGAACGTACCTTTTGGT
 TCGGAACAACTGAGGGAAACTTCAGCTAATACCGGATAAGCCCTTACGGGGAAAGATTTA
 TCGCCGAAAGATCGGCCCGCGTCTGATTAGCTTGTTGGTGAGGTAATGGCTCACCAAGGC
 GACGATCAGTAGCTGGTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAA
 ACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCA
 TGCCGCGTGAGTGATGAAGGCCCTAGGGTTGTAAAGCTCTTTTGTGCGGGAAGATAATGA
 CGGTACCGCAAGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGG
 GGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGATCTTTAAGTCAGG
 GGTGAAATCCTGGAGCTCAACTCCAGAACTGCCTTTGATACTGAAGGTCTTGAGTTCGGG
 AGAGGTGAGTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCAG
 TGGCGAAGGCGGCTCACTGGCCCGATACTGACGCTGAGGCACGAAAGCGTGGGGAGCAAA
 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTAGTGGGTT
 TACTCACTAGTGGCGCAGCTAACGCTTTAAGCATTCCGCCTGGGGAGTACGGTCGCAAGA
 TTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCG
 ACGCAACGCGCAGAACCTTACCAGCCCTTGACATGTCCATGACCGGTCGCAGAGATGTGA
 CCTTCTCTTCGGAGCATGGAGCACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAG
 ATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCCGTCCTTAGTTGCTACCATTTAGTTG
 AGCACTCTAAGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGATGACGTCAAGTCC
 TCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGACAATGGGAAGCAA
 AGGGGCAACCCCTAGCAAATCTCAAAAAACCGTCTCAGTTCGGATTGGGCTCTGCAACTC
 GAGCCCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCACGGTGAATACGTTC
 CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTTTTACCTGAAGGCGGTGC
 GCTAACCCGCAAGGGAGGCAGCCGACCACGGTAGGGTCAGCGACTGGGGTGAAGTCGTAA
 CAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCT