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Intracellular trafficking and secretion

COG Name Group Contig Gene COG ID Score Evalue
Biopolymer transport protein U Contig28 Nham0728 COG0811 82 2e-17
Biopolymer transport protein U Contig28 Nham0729 COG0848 80 5e-17
Biopolymer transport protein U Contig28 Nham0747 COG0811 163 2e-41
Biopolymer transport protein U Contig28 Nham0748 COG0848 132 9e-33
Biopolymer transport protein U Contig28 Nham1495 COG0811 48 5e-07
Biopolymer transport protein U Contig28 Nham1515 COG0811 149 2e-37
Biopolymer transport protein U Contig28 Nham1516 COG0848 117 4e-28
Biopolymer transport protein U Contig28 Nham3514 COG0848 140 5e-35
Biopolymer transport protein U Contig28 Nham3515 COG0811 185 2e-48
Biopolymer transport protein U Contig28 Nham3639 COG0811 172 4e-44
Biopolymer transport protein U Contig28 Nham3640 COG0848 127 3e-31
Competence protein ComGC U Contig28 Nham0738 COG4537 35 0.003
Competence protein ComGC U Contig28 Nham0739 COG4537 46 1e-06
Conjugal transfer/entry exclusion protein U Contig25 Nham4565 COG5314 155 4e-39

FLAGELLUM STRUCTURE AND BIOGENESIS

COG Name Group Contig Gene COG ID Score Evalue
Flagellar biosynthesis pathway component FlhA U Contig28 Nham0331 COG1298 36 0.004
Flagellar biosynthesis pathway component FlhA U Contig28 Nham3367 COG1298 792 0.0
Flagellar biosynthesis pathway component FlhB U Contig28 Nham1397 COG1377 349 2e-97
Flagellar biosynthesis pathway component FlhB U Contig28 Nham1578 COG1377 87 3e-19
Flagellar biosynthesis pathway component FliP U Contig28 Nham1390 COG1338 272 2e-74
Flagellar biosynthesis pathway component FliQ U Contig28 Nham1395 COG1987 68 1e-13
Flagellar biosynthesis pathway component FliR U Contig28 Nham1396 COG1684 133 1e-32
Flagellar biosynthesis/type III secretory pathway ATPase U Contig28 Nham0108 COG1157 109 3e-25
Flagellar biosynthesis/type III secretory pathway ATPase U Contig28 Nham0529 COG1157 245 5e-66
Flagellar biosynthesis/type III secretory pathway ATPase U Contig28 Nham0532 COG1157 211 7e-56
Flagellar biosynthesis/type III secretory pathway ATPase U Contig28 Nham1207 COG1157 35 0.010
Flagellar biosynthesis/type III secretory pathway ATPase U Contig28 Nham3370 COG1157 549 1.0e-157
Flagellar biosynthesis/type III secretory pathway lipoprotein U Contig28 Nham0691 COG1766 364 1.0e-102
Flagellar biosynthesis/type III secretory pathway protein U Contig28 Nham0689 COG1317 48 6e-07
Flagellar hook-basal body protein U Contig28 Nham1394 COG1677 54 2e-09
Flagellar motor switch/type III secretory pathway protein U Contig28 Nham0688 COG1886 87 5e-19
Flagellar motor switch/type III secretory pathway protein U Contig28 Nham1386 COG1886 40 3e-04
Flagellar motor switch/type III secretory pathway protein U Contig28 Nham2162 COG1886 54 2e-09
Predicted ATPase involved in biogenesis of flagella U Contig28 Nham1616 COG2874 35 0.007
Predicted ATPase involved in biogenesis of flagella U Contig28 Nham2031 COG2874 43 7e-05
Predicted ATPase involved in biogenesis of flagella U Contig28 Nham2291 COG2874 42 9e-05
COG Name Group Contig Gene COG ID Score Evalue
Flp pilus assembly protein ATPase CpaE U Contig26 Nham4517 COG4963 48 1e-06
Flp pilus assembly protein ATPase CpaE U Contig27 Nham4281 COG4963 58 2e-09
Flp pilus assembly protein ATPase CpaE U Contig27 Nham4342 COG4963 43 2e-05
Flp pilus assembly protein ATPase CpaE U Contig28 Nham0103 COG4963 50 2e-07
Flp pilus assembly protein ATPase CpaE U Contig28 Nham0389 COG4963 249 3e-67
Flp pilus assembly protein ATPase CpaE U Contig28 Nham0572 COG4963 53 2e-08
Flp pilus assembly protein ATPase CpaE U Contig28 Nham1048 COG4963 35 0.004
Flp pilus assembly protein ATPase CpaE U Contig28 Nham1472 COG4963 43 5e-05
Flp pilus assembly protein ATPase CpaE U Contig28 Nham3056 COG4963 39 0.002
Flp pilus assembly protein ATPase CpaE U Contig28 Nham3861 COG4963 45 4e-06
Flp pilus assembly protein ATPase CpaF U Contig25 Nham4569 COG4962 284 5e-78
Flp pilus assembly protein ATPase CpaF U Contig26 Nham4437 COG4962 216 2e-57
Flp pilus assembly protein ATPase CpaF U Contig28 Nham0388 COG4962 476 1.0e-135
Flp pilus assembly protein ATPase CpaF U Contig28 Nham0741 COG4962 64 2e-11
Flp pilus assembly protein CpaB U Contig28 Nham0392 COG3745 195 3e-51
Flp pilus assembly protein pilin Flp U Contig28 Nham0394 COG3847 54 2e-09
Flp pilus assembly protein pilin Flp U Contig28 Nham1406 COG3847 46 6e-07
Flp pilus assembly protein protease CpaA U Contig28 Nham0393 COG4960 91 6e-20
Flp pilus assembly protein secretin CpaC U Contig28 Nham0391 COG4964 364 1.0e-102
Flp pilus assembly protein secretin CpaC U Contig28 Nham0395 COG4964 47 6e-07
Flp pilus assembly protein secretin CpaC U Contig28 Nham0742 COG4964 88 2e-18
Flp pilus assembly protein TadB U Contig28 Nham0386 COG4965 60 3e-10
Flp pilus assembly protein TadB U Contig28 Nham0387 COG4965 245 4e-66
Flp pilus assembly protein TadC U Contig28 Nham0386 COG2064 117 1e-27
Flp pilus assembly protein TadC U Contig28 Nham0387 COG2064 56 4e-09
Flp pilus assembly protein TadD contains TPR repeats U Contig28 Nham0385 COG5010 138 6e-34
Flp pilus assembly protein TadD contains TPR repeats U Contig28 Nham2170 COG5010 38 0.001
Flp pilus assembly protein TadD contains TPR repeats U Contig28 Nham2184 COG5010 42 8e-05
Flp pilus assembly protein TadD contains TPR repeats U Contig28 Nham3088 COG5010 40 4e-04
Flp pilus assembly protein TadD contains TPR repeats U Contig28 Nham3217 COG5010 50 6e-07
Flp pilus assembly protein TadG U Contig28 Nham0396 COG4961 64 5e-12
Flp pilus assembly protein TadG U Contig28 Nham0397 COG4961 59 2e-10
Flp pilus assembly protein TadG U Contig28 Nham2418 COG4961 55 1e-08
Flp pilus assembly protein TadG U Contig28 Nham3156 COG4961 57 6e-10
Hemolysin activation/secretion protein U Contig28 Nham0727 COG2831 228 1e-60
Hemolysin activation/secretion protein U Contig28 Nham1702 COG2831 57 6e-09
Lipoprotein signal peptidase U Contig28 Nham3163 COG0597 99 2e-22
Membrane protein implicated in regulation of membrane protease activity U Contig28 Nham0348 COG1585 50 3e-07
Multiple antibiotic transporter U Contig28 Nham1763 COG2095 123 8e-30
Outer membrane protein U Contig25 Nham4633 COG1538 119 7e-28
Outer membrane protein U Contig26 Nham4384 COG1538 121 1e-28
Outer membrane protein U Contig26 Nham4530 COG1538 116 3e-27
Outer membrane protein U Contig28 Nham0992 COG1538 37 0.003
Outer membrane protein U Contig28 Nham1081 COG1538 36 0.005
Outer membrane protein U Contig28 Nham1826 COG1538 173 3e-44
Outer membrane protein U Contig28 Nham1848 COG1538 117 2e-27
Outer membrane protein U Contig28 Nham2066 COG1538 233 3e-62
Outer membrane protein U Contig28 Nham3299 COG1538 193 2e-50
Outer membrane protein U Contig28 Nham3601 COG1538 211 6e-56
Periplasmic component of the Tol biopolymer transport system U Contig28 Nham3512 COG0823 369 1.0e-103
Periplasmic serine protease (ClpP class) U Contig28 Nham0067 COG0616 196 2e-51
Periplasmic serine protease (ClpP class) U Contig28 Nham0348 COG0616 47 3e-06
Periplasmic serine protease (ClpP class) U Contig28 Nham2229 COG0616 42 3e-05
Periplasmic serine protease (ClpP class) U Contig28 Nham2389 COG0616 54 1e-08
Periplasmic serine protease (ClpP class) U Contig28 Nham3213 COG0616 204 4e-54
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake U Contig28 Nham2285 COG0758 319 2e-88
Preprotein translocase subunit Sec63 U Contig28 Nham0156 COG5407 56 4e-09
Preprotein translocase subunit Sec63 U Contig28 Nham0767 COG5407 50 2e-07
Preprotein translocase subunit Sec63 U Contig28 Nham2421 COG5407 38 7e-04

PREPROTEIN TRANSLOCASE SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig28 Nham0485 COG0653 1044 0.0
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig28 Nham2091 COG0653 38 9e-04
Preprotein translocase subunit SecA (ATPase RNA helicase) U Contig28 Nham3642 COG0653 695 0.0
Preprotein translocase subunit SecB U Contig28 Nham0116 COG1952 158 1e-40
Preprotein translocase subunit SecD U Contig28 Nham0712 COG0342 62 2e-10
Preprotein translocase subunit SecD U Contig28 Nham0993 COG0342 51 6e-07
Preprotein translocase subunit SecD U Contig28 Nham1082 COG0342 39 0.002
Preprotein translocase subunit SecD U Contig28 Nham1509 COG0342 64 5e-11
Preprotein translocase subunit SecD U Contig28 Nham1799 COG0342 492 1.0e-140
Preprotein translocase subunit SecD U Contig28 Nham1800 COG0342 74 1e-14
Preprotein translocase subunit SecD U Contig28 Nham1850 COG0342 41 5e-04
Preprotein translocase subunit SecD U Contig28 Nham2063 COG0342 47 6e-06
Preprotein translocase subunit SecD U Contig28 Nham2064 COG0342 65 2e-11
Preprotein translocase subunit SecD U Contig28 Nham2699 COG0342 63 7e-11
Preprotein translocase subunit SecD U Contig28 Nham3538 COG0342 52 2e-07
Preprotein translocase subunit SecD U Contig28 Nham3602 COG0342 65 2e-11
Preprotein translocase subunit SecD U Contig28 Nham3603 COG0342 62 2e-10
Preprotein translocase subunit SecD U Contig28 Nham3610 COG0342 60 8e-10
Preprotein translocase subunit SecE U Contig28 Nham1525 COG0690 45 8e-07
Preprotein translocase subunit SecF U Contig28 Nham0993 COG0341 39 0.002
Preprotein translocase subunit SecF U Contig28 Nham1509 COG0341 39 0.001
Preprotein translocase subunit SecF U Contig28 Nham1799 COG0341 89 1e-18
Preprotein translocase subunit SecF U Contig28 Nham1800 COG0341 299 3e-82
Preprotein translocase subunit SecF U Contig28 Nham1854 COG0341 40 0.001
Preprotein translocase subunit SecF U Contig28 Nham2063 COG0341 46 1e-05
Preprotein translocase subunit SecF U Contig28 Nham2064 COG0341 38 0.003
Preprotein translocase subunit SecF U Contig28 Nham3538 COG0341 40 0.001
Preprotein translocase subunit SecF U Contig28 Nham3602 COG0341 45 2e-05
Preprotein translocase subunit SecF U Contig28 Nham3603 COG0341 48 3e-06
Preprotein translocase subunit SecG U Contig28 Nham1737 COG1314 66 1e-12
Preprotein translocase subunit SecY U Contig28 Nham1565 COG0201 443 1.0e-125
Preprotein translocase subunit YajC U Contig28 Nham1798 COG1862 95 2e-21
Preprotein translocase subunit YidC U Contig28 Nham3703 COG0706 249 3e-67
COG Name Group Contig Gene COG ID Score Evalue
Protease subunit of ATP-dependent Clp protease U Contig28 Nham0067 COG0740 38 0.001
Protease subunit of ATP-dependent Clp protease U Contig28 Nham0938 COG0740 36 0.003
Protease subunit of ATP-dependent Clp protease U Contig28 Nham2229 COG0740 289 1e-79
Protease subunit of ATP-dependent Clp protease U Contig28 Nham2389 COG0740 102 3e-23
Protease subunit of ATP-dependent Clp protease U Contig28 Nham3213 COG0740 35 0.006
Sec-independent protein secretion pathway components U Contig28 Nham1788 COG1826 60 4e-11
Sec-independent protein secretion pathway components U Contig28 Nham1789 COG1826 60 1e-10
Sec-independent protein secretion pathway component TatC U Contig28 Nham1790 COG0805 213 1e-56
Signal peptidase I U Contig28 Nham0252 COG0681 67 1e-12
Signal peptidase I U Contig28 Nham2252 COG0681 76 3e-15
Signal recognition particle GTPase U Contig26 Nham4517 COG0541 39 6e-04
Signal recognition particle GTPase U Contig26 Nham4525 COG0541 41 6e-05
Signal recognition particle GTPase U Contig27 Nham4271 COG0541 43 2e-05
Signal recognition particle GTPase U Contig27 Nham4281 COG0552 35 0.008
Signal recognition particle GTPase U Contig27 Nham4281 COG0541 40 2e-04
Signal recognition particle GTPase U Contig28 Nham0402 COG0552 344 6e-96
Signal recognition particle GTPase U Contig28 Nham0402 COG0541 221 7e-59
Signal recognition particle GTPase U Contig28 Nham0572 COG0541 37 0.002
Signal recognition particle GTPase U Contig28 Nham2640 COG0552 36 0.003
Signal recognition particle GTPase U Contig28 Nham2882 COG0541 34 0.009
Signal recognition particle GTPase U Contig28 Nham3578 COG0552 205 5e-54
Signal recognition particle GTPase U Contig28 Nham3578 COG0541 560 1.0e-161
Signal recognition particle GTPase U Contig28 Nham3861 COG0552 34 0.007
Tfp pilus assembly protein ATPase PilU U Contig25 Nham4569 COG5008 55 5e-09
Tfp pilus assembly protein ATPase PilU U Contig26 Nham4437 COG5008 50 3e-07
Tfp pilus assembly protein ATPase PilU U Contig26 Nham4523 COG5008 37 0.004
Tfp pilus assembly protein ATPase PilU U Contig28 Nham0388 COG5008 64 2e-11
Tfp pilus assembly protein ATPase PilU U Contig28 Nham0741 COG5008 113 4e-26
Tfp pilus assembly protein FimT U Contig28 Nham0738 COG4970 54 5e-09
Tfp pilus assembly protein FimV U Contig28 Nham0031 COG3170 38 0.003
Tfp pilus assembly protein FimV U Contig28 Nham0725 COG3170 39 0.005
Tfp pilus assembly protein FimV U Contig28 Nham1389 COG3170 41 7e-04
Tfp pilus assembly protein major pilin PilA U Contig28 Nham0738 COG4969 34 0.005
Tfp pilus assembly protein major pilin PilA U Contig28 Nham0739 COG4969 39 2e-04
Tfp pilus assembly protein PilE U Contig28 Nham0737 COG4968 36 0.001
Tfp pilus assembly protein PilE U Contig28 Nham0738 COG4968 34 0.005
Tfp pilus assembly protein PilE U Contig28 Nham0739 COG4968 41 5e-05
Tfp pilus assembly protein PilF U Contig28 Nham0385 COG3063 37 0.001
Tfp pilus assembly protein PilF U Contig28 Nham1215 COG3063 43 2e-05
Tfp pilus assembly protein PilF U Contig28 Nham1574 COG3063 50 2e-07
Tfp pilus assembly protein PilF U Contig28 Nham3088 COG3063 40 4e-04
Tfp pilus assembly protein PilF U Contig28 Nham3217 COG3063 42 1e-04
Tfp pilus assembly protein PilN U Contig28 Nham0734 COG3166 43 2e-05
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig25 Nham4569 COG2805 67 2e-12
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig26 Nham4437 COG2805 57 2e-09
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig28 Nham0388 COG2805 70 4e-13
Tfp pilus assembly protein pilus retraction ATPase PilT U Contig28 Nham0741 COG2805 184 2e-47
Tfp pilus assembly protein PilV U Contig28 Nham0737 COG4967 33 0.007
Tfp pilus assembly protein tip-associated adhesin PilY1 U Contig28 Nham0584 COG3419 34 0.006
Type III secretory pathway component EscR U Contig28 Nham1390 COG4790 178 3e-46
Type III secretory pathway component EscS U Contig28 Nham1395 COG4794 52 1e-08
Type III secretory pathway component EscT U Contig28 Nham1396 COG4791 78 6e-16
Type III secretory pathway component EscU U Contig28 Nham1397 COG4792 217 9e-58
Type III secretory pathway component EscU U Contig28 Nham1578 COG4792 56 4e-10
Type III secretory pathway component EscV U Contig28 Nham3367 COG4789 506 1.0e-144
Type III secretory pathway lipoprotein EscJ U Contig28 Nham0691 COG4669 62 1e-10
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig25 Nham4569 COG2804 83 2e-17
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig26 Nham4437 COG2804 73 2e-14
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig28 Nham0090 COG2804 38 0.004
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig28 Nham0388 COG2804 79 6e-16
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB U Contig28 Nham0741 COG2804 481 1.0e-137
Type II secretory pathway component ExeA (predicted ATPase) U Contig28 Nham0054 COG3267 36 0.005
Type II secretory pathway component HofQ U Contig28 Nham0391 COG4796 95 7e-21
Type II secretory pathway component HofQ U Contig28 Nham0742 COG4796 116 5e-27
Type II secretory pathway component PulC U Contig28 Nham1441 COG3031 35 0.009
Type II secretory pathway component PulD U Contig28 Nham0391 COG1450 137 2e-33
Type II secretory pathway component PulD U Contig28 Nham0742 COG1450 196 4e-51
Type II secretory pathway component PulF U Contig28 Nham0740 COG1459 262 4e-71
Type II secretory pathway component PulJ U Contig28 Nham0736 COG4795 40 1e-04
Type II secretory pathway component PulK U Contig28 Nham0735 COG3156 77 1e-15
Type II secretory pathway prepilin signal peptidase PulO and related peptidase U Contig28 Nham0731 COG1989 55 2e-09
Type II secretory pathway pseudopilin PulG U Contig28 Nham0736 COG2165 38 9e-04
Type II secretory pathway pseudopilin PulG U Contig28 Nham0737 COG2165 36 0.001
Type II secretory pathway pseudopilin PulG U Contig28 Nham0738 COG2165 45 2e-06
Type II secretory pathway pseudopilin PulG U Contig28 Nham0739 COG2165 72 3e-14
Type IV secretory pathway component VirB8 protein U Contig26 Nham4440 COG3736 200 8e-53
Type IV secretory pathway protease TraF U Contig25 Nham4541 COG4959 122 1e-29
Type IV secretory pathway TrbD protein U Contig25 Nham4567 COG5268 93 5e-21
Type IV secretory pathway TrbF protein U Contig25 Nham4562 COG3701 259 8e-71
Type IV secretory pathway TrbL protein U Contig25 Nham4563 COG3846 167 1e-42
Type IV secretory pathway TrbL protein U Contig28 Nham3191 COG3846 41 1e-04
Type IV secretory pathway VirB10 protein U Contig25 Nham4559 COG2948 201 7e-53
Type IV secretory pathway VirB10 protein U Contig26 Nham4438 COG2948 194 1e-50
Type IV secretory pathway VirB10 protein U Contig28 Nham3513 COG2948 36 0.004
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig25 Nham4569 COG0630 163 2e-41
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig26 Nham4437 COG0630 227 7e-61
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig28 Nham0388 COG0630 216 2e-57
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig28 Nham0741 COG0630 84 4e-17
Type IV secretory pathway VirB11 protein involved in flagella biosynthesis U Contig28 Nham1534 COG0630 41 3e-04
Type IV secretory pathway VirB2 protein (pilin) U Contig25 Nham4568 COG3838 58 2e-10
Type IV secretory pathway VirB2 protein (pilin) U Contig26 Nham4447 COG3838 52 8e-09
Type IV secretory pathway VirB3 protein U Contig26 Nham4446 COG3702 80 3e-17
Type IV secretory pathway VirB4 protein U Contig25 Nham4566 COG3451 599 1.0e-172
Type IV secretory pathway VirB4 protein U Contig26 Nham4445 COG3451 678 0.0
Type IV secretory pathway VirB4 protein U Contig26 Nham4523 COG3451 41 2e-04
Type IV secretory pathway VirB4 protein U Contig28 Nham0593 COG3451 39 0.001
Type IV secretory pathway VirB4 protein U Contig28 Nham1508 COG3451 36 0.007
Type IV secretory pathway VirB4 protein U Contig28 Nham1534 COG3451 39 0.001
Type IV secretory pathway VirB4 protein U Contig28 Nham2631 COG3451 41 2e-04
Type IV secretory pathway VirB6 protein U Contig26 Nham4441 COG3704 127 1e-30
Type IV secretory pathway VirB9 protein U Contig25 Nham4561 COG3504 183 1e-47
Type IV secretory pathway VirB9 protein U Contig26 Nham4439 COG3504 164 5e-42
Type IV secretory pathway VirD2 pilin (relaxase) U Contig26 Nham4527 COG3843 67 7e-12
Type IV secretory pathway VirD2 pilin (relaxase) U Contig27 Nham4269 COG3843 70 9e-13
Type IV secretory pathway VirD4 protein U Contig25 Nham4672 COG3505 360 1.0e-100
Type IV secretory pathway VirD4 protein U Contig26 Nham4436 COG3505 340 3e-94
Type IV secretory pathway VirD4 protein U Contig28 Nham0295 COG3505 50 2e-07
Type IV secretory pathway VirD4 protein U Contig28 Nham0593 COG3505 217 2e-57
Type V secretory pathway adhesin AidA U Contig28 Nham1341 COG3468 94 5e-20

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