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| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| Biopolymer transport protein | U | Contig28 | Nham0728 | COG0811 | 82 | 2e-17 |
| Biopolymer transport protein | U | Contig28 | Nham0729 | COG0848 | 80 | 5e-17 |
| Biopolymer transport protein | U | Contig28 | Nham0747 | COG0811 | 163 | 2e-41 |
| Biopolymer transport protein | U | Contig28 | Nham0748 | COG0848 | 132 | 9e-33 |
| Biopolymer transport protein | U | Contig28 | Nham1495 | COG0811 | 48 | 5e-07 |
| Biopolymer transport protein | U | Contig28 | Nham1515 | COG0811 | 149 | 2e-37 |
| Biopolymer transport protein | U | Contig28 | Nham1516 | COG0848 | 117 | 4e-28 |
| Biopolymer transport protein | U | Contig28 | Nham3514 | COG0848 | 140 | 5e-35 |
| Biopolymer transport protein | U | Contig28 | Nham3515 | COG0811 | 185 | 2e-48 |
| Biopolymer transport protein | U | Contig28 | Nham3639 | COG0811 | 172 | 4e-44 |
| Biopolymer transport protein | U | Contig28 | Nham3640 | COG0848 | 127 | 3e-31 |
| Competence protein ComGC | U | Contig28 | Nham0738 | COG4537 | 35 | 0.003 |
| Competence protein ComGC | U | Contig28 | Nham0739 | COG4537 | 46 | 1e-06 |
| Conjugal transfer/entry exclusion protein | U | Contig25 | Nham4565 | COG5314 | 155 | 4e-39 |
| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| Flagellar biosynthesis pathway component FlhA | U | Contig28 | Nham0331 | COG1298 | 36 | 0.004 |
| Flagellar biosynthesis pathway component FlhA | U | Contig28 | Nham3367 | COG1298 | 792 | 0.0 |
| Flagellar biosynthesis pathway component FlhB | U | Contig28 | Nham1397 | COG1377 | 349 | 2e-97 |
| Flagellar biosynthesis pathway component FlhB | U | Contig28 | Nham1578 | COG1377 | 87 | 3e-19 |
| Flagellar biosynthesis pathway component FliP | U | Contig28 | Nham1390 | COG1338 | 272 | 2e-74 |
| Flagellar biosynthesis pathway component FliQ | U | Contig28 | Nham1395 | COG1987 | 68 | 1e-13 |
| Flagellar biosynthesis pathway component FliR | U | Contig28 | Nham1396 | COG1684 | 133 | 1e-32 |
| Flagellar biosynthesis/type III secretory pathway ATPase | U | Contig28 | Nham0108 | COG1157 | 109 | 3e-25 |
| Flagellar biosynthesis/type III secretory pathway ATPase | U | Contig28 | Nham0529 | COG1157 | 245 | 5e-66 |
| Flagellar biosynthesis/type III secretory pathway ATPase | U | Contig28 | Nham0532 | COG1157 | 211 | 7e-56 |
| Flagellar biosynthesis/type III secretory pathway ATPase | U | Contig28 | Nham1207 | COG1157 | 35 | 0.010 |
| Flagellar biosynthesis/type III secretory pathway ATPase | U | Contig28 | Nham3370 | COG1157 | 549 | 1.0e-157 |
| Flagellar biosynthesis/type III secretory pathway lipoprotein | U | Contig28 | Nham0691 | COG1766 | 364 | 1.0e-102 |
| Flagellar biosynthesis/type III secretory pathway protein | U | Contig28 | Nham0689 | COG1317 | 48 | 6e-07 |
| Flagellar hook-basal body protein | U | Contig28 | Nham1394 | COG1677 | 54 | 2e-09 |
| Flagellar motor switch/type III secretory pathway protein | U | Contig28 | Nham0688 | COG1886 | 87 | 5e-19 |
| Flagellar motor switch/type III secretory pathway protein | U | Contig28 | Nham1386 | COG1886 | 40 | 3e-04 |
| Flagellar motor switch/type III secretory pathway protein | U | Contig28 | Nham2162 | COG1886 | 54 | 2e-09 |
| Predicted ATPase involved in biogenesis of flagella | U | Contig28 | Nham1616 | COG2874 | 35 | 0.007 |
| Predicted ATPase involved in biogenesis of flagella | U | Contig28 | Nham2031 | COG2874 | 43 | 7e-05 |
| Predicted ATPase involved in biogenesis of flagella | U | Contig28 | Nham2291 | COG2874 | 42 | 9e-05 |
| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| Flp pilus assembly protein ATPase CpaE | U | Contig26 | Nham4517 | COG4963 | 48 | 1e-06 |
| Flp pilus assembly protein ATPase CpaE | U | Contig27 | Nham4281 | COG4963 | 58 | 2e-09 |
| Flp pilus assembly protein ATPase CpaE | U | Contig27 | Nham4342 | COG4963 | 43 | 2e-05 |
| Flp pilus assembly protein ATPase CpaE | U | Contig28 | Nham0103 | COG4963 | 50 | 2e-07 |
| Flp pilus assembly protein ATPase CpaE | U | Contig28 | Nham0389 | COG4963 | 249 | 3e-67 |
| Flp pilus assembly protein ATPase CpaE | U | Contig28 | Nham0572 | COG4963 | 53 | 2e-08 |
| Flp pilus assembly protein ATPase CpaE | U | Contig28 | Nham1048 | COG4963 | 35 | 0.004 |
| Flp pilus assembly protein ATPase CpaE | U | Contig28 | Nham1472 | COG4963 | 43 | 5e-05 |
| Flp pilus assembly protein ATPase CpaE | U | Contig28 | Nham3056 | COG4963 | 39 | 0.002 |
| Flp pilus assembly protein ATPase CpaE | U | Contig28 | Nham3861 | COG4963 | 45 | 4e-06 |
| Flp pilus assembly protein ATPase CpaF | U | Contig25 | Nham4569 | COG4962 | 284 | 5e-78 |
| Flp pilus assembly protein ATPase CpaF | U | Contig26 | Nham4437 | COG4962 | 216 | 2e-57 |
| Flp pilus assembly protein ATPase CpaF | U | Contig28 | Nham0388 | COG4962 | 476 | 1.0e-135 |
| Flp pilus assembly protein ATPase CpaF | U | Contig28 | Nham0741 | COG4962 | 64 | 2e-11 |
| Flp pilus assembly protein CpaB | U | Contig28 | Nham0392 | COG3745 | 195 | 3e-51 |
| Flp pilus assembly protein pilin Flp | U | Contig28 | Nham0394 | COG3847 | 54 | 2e-09 |
| Flp pilus assembly protein pilin Flp | U | Contig28 | Nham1406 | COG3847 | 46 | 6e-07 |
| Flp pilus assembly protein protease CpaA | U | Contig28 | Nham0393 | COG4960 | 91 | 6e-20 |
| Flp pilus assembly protein secretin CpaC | U | Contig28 | Nham0391 | COG4964 | 364 | 1.0e-102 |
| Flp pilus assembly protein secretin CpaC | U | Contig28 | Nham0395 | COG4964 | 47 | 6e-07 |
| Flp pilus assembly protein secretin CpaC | U | Contig28 | Nham0742 | COG4964 | 88 | 2e-18 |
| Flp pilus assembly protein TadB | U | Contig28 | Nham0386 | COG4965 | 60 | 3e-10 |
| Flp pilus assembly protein TadB | U | Contig28 | Nham0387 | COG4965 | 245 | 4e-66 |
| Flp pilus assembly protein TadC | U | Contig28 | Nham0386 | COG2064 | 117 | 1e-27 |
| Flp pilus assembly protein TadC | U | Contig28 | Nham0387 | COG2064 | 56 | 4e-09 |
| Flp pilus assembly protein TadD contains TPR repeats | U | Contig28 | Nham0385 | COG5010 | 138 | 6e-34 |
| Flp pilus assembly protein TadD contains TPR repeats | U | Contig28 | Nham2170 | COG5010 | 38 | 0.001 |
| Flp pilus assembly protein TadD contains TPR repeats | U | Contig28 | Nham2184 | COG5010 | 42 | 8e-05 |
| Flp pilus assembly protein TadD contains TPR repeats | U | Contig28 | Nham3088 | COG5010 | 40 | 4e-04 |
| Flp pilus assembly protein TadD contains TPR repeats | U | Contig28 | Nham3217 | COG5010 | 50 | 6e-07 |
| Flp pilus assembly protein TadG | U | Contig28 | Nham0396 | COG4961 | 64 | 5e-12 |
| Flp pilus assembly protein TadG | U | Contig28 | Nham0397 | COG4961 | 59 | 2e-10 |
| Flp pilus assembly protein TadG | U | Contig28 | Nham2418 | COG4961 | 55 | 1e-08 |
| Flp pilus assembly protein TadG | U | Contig28 | Nham3156 | COG4961 | 57 | 6e-10 |
| Hemolysin activation/secretion protein | U | Contig28 | Nham0727 | COG2831 | 228 | 1e-60 |
| Hemolysin activation/secretion protein | U | Contig28 | Nham1702 | COG2831 | 57 | 6e-09 |
| Lipoprotein signal peptidase | U | Contig28 | Nham3163 | COG0597 | 99 | 2e-22 |
| Membrane protein implicated in regulation of membrane protease activity | U | Contig28 | Nham0348 | COG1585 | 50 | 3e-07 |
| Multiple antibiotic transporter | U | Contig28 | Nham1763 | COG2095 | 123 | 8e-30 |
| Outer membrane protein | U | Contig25 | Nham4633 | COG1538 | 119 | 7e-28 |
| Outer membrane protein | U | Contig26 | Nham4384 | COG1538 | 121 | 1e-28 |
| Outer membrane protein | U | Contig26 | Nham4530 | COG1538 | 116 | 3e-27 |
| Outer membrane protein | U | Contig28 | Nham0992 | COG1538 | 37 | 0.003 |
| Outer membrane protein | U | Contig28 | Nham1081 | COG1538 | 36 | 0.005 |
| Outer membrane protein | U | Contig28 | Nham1826 | COG1538 | 173 | 3e-44 |
| Outer membrane protein | U | Contig28 | Nham1848 | COG1538 | 117 | 2e-27 |
| Outer membrane protein | U | Contig28 | Nham2066 | COG1538 | 233 | 3e-62 |
| Outer membrane protein | U | Contig28 | Nham3299 | COG1538 | 193 | 2e-50 |
| Outer membrane protein | U | Contig28 | Nham3601 | COG1538 | 211 | 6e-56 |
| Periplasmic component of the Tol biopolymer transport system | U | Contig28 | Nham3512 | COG0823 | 369 | 1.0e-103 |
| Periplasmic serine protease (ClpP class) | U | Contig28 | Nham0067 | COG0616 | 196 | 2e-51 |
| Periplasmic serine protease (ClpP class) | U | Contig28 | Nham0348 | COG0616 | 47 | 3e-06 |
| Periplasmic serine protease (ClpP class) | U | Contig28 | Nham2229 | COG0616 | 42 | 3e-05 |
| Periplasmic serine protease (ClpP class) | U | Contig28 | Nham2389 | COG0616 | 54 | 1e-08 |
| Periplasmic serine protease (ClpP class) | U | Contig28 | Nham3213 | COG0616 | 204 | 4e-54 |
| Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake | U | Contig28 | Nham2285 | COG0758 | 319 | 2e-88 |
| Preprotein translocase subunit Sec63 | U | Contig28 | Nham0156 | COG5407 | 56 | 4e-09 |
| Preprotein translocase subunit Sec63 | U | Contig28 | Nham0767 | COG5407 | 50 | 2e-07 |
| Preprotein translocase subunit Sec63 | U | Contig28 | Nham2421 | COG5407 | 38 | 7e-04 |
| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| Preprotein translocase subunit SecA (ATPase RNA helicase) | U | Contig28 | Nham0485 | COG0653 | 1044 | 0.0 |
| Preprotein translocase subunit SecA (ATPase RNA helicase) | U | Contig28 | Nham2091 | COG0653 | 38 | 9e-04 |
| Preprotein translocase subunit SecA (ATPase RNA helicase) | U | Contig28 | Nham3642 | COG0653 | 695 | 0.0 |
| Preprotein translocase subunit SecB | U | Contig28 | Nham0116 | COG1952 | 158 | 1e-40 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham0712 | COG0342 | 62 | 2e-10 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham0993 | COG0342 | 51 | 6e-07 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham1082 | COG0342 | 39 | 0.002 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham1509 | COG0342 | 64 | 5e-11 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham1799 | COG0342 | 492 | 1.0e-140 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham1800 | COG0342 | 74 | 1e-14 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham1850 | COG0342 | 41 | 5e-04 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham2063 | COG0342 | 47 | 6e-06 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham2064 | COG0342 | 65 | 2e-11 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham2699 | COG0342 | 63 | 7e-11 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham3538 | COG0342 | 52 | 2e-07 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham3602 | COG0342 | 65 | 2e-11 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham3603 | COG0342 | 62 | 2e-10 |
| Preprotein translocase subunit SecD | U | Contig28 | Nham3610 | COG0342 | 60 | 8e-10 |
| Preprotein translocase subunit SecE | U | Contig28 | Nham1525 | COG0690 | 45 | 8e-07 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham0993 | COG0341 | 39 | 0.002 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham1509 | COG0341 | 39 | 0.001 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham1799 | COG0341 | 89 | 1e-18 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham1800 | COG0341 | 299 | 3e-82 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham1854 | COG0341 | 40 | 0.001 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham2063 | COG0341 | 46 | 1e-05 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham2064 | COG0341 | 38 | 0.003 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham3538 | COG0341 | 40 | 0.001 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham3602 | COG0341 | 45 | 2e-05 |
| Preprotein translocase subunit SecF | U | Contig28 | Nham3603 | COG0341 | 48 | 3e-06 |
| Preprotein translocase subunit SecG | U | Contig28 | Nham1737 | COG1314 | 66 | 1e-12 |
| Preprotein translocase subunit SecY | U | Contig28 | Nham1565 | COG0201 | 443 | 1.0e-125 |
| Preprotein translocase subunit YajC | U | Contig28 | Nham1798 | COG1862 | 95 | 2e-21 |
| Preprotein translocase subunit YidC | U | Contig28 | Nham3703 | COG0706 | 249 | 3e-67 |
| COG Name | Group | Contig | Gene | COG ID | Score | Evalue |
|---|---|---|---|---|---|---|
| Protease subunit of ATP-dependent Clp protease | U | Contig28 | Nham0067 | COG0740 | 38 | 0.001 |
| Protease subunit of ATP-dependent Clp protease | U | Contig28 | Nham0938 | COG0740 | 36 | 0.003 |
| Protease subunit of ATP-dependent Clp protease | U | Contig28 | Nham2229 | COG0740 | 289 | 1e-79 |
| Protease subunit of ATP-dependent Clp protease | U | Contig28 | Nham2389 | COG0740 | 102 | 3e-23 |
| Protease subunit of ATP-dependent Clp protease | U | Contig28 | Nham3213 | COG0740 | 35 | 0.006 |
| Sec-independent protein secretion pathway components | U | Contig28 | Nham1788 | COG1826 | 60 | 4e-11 |
| Sec-independent protein secretion pathway components | U | Contig28 | Nham1789 | COG1826 | 60 | 1e-10 |
| Sec-independent protein secretion pathway component TatC | U | Contig28 | Nham1790 | COG0805 | 213 | 1e-56 |
| Signal peptidase I | U | Contig28 | Nham0252 | COG0681 | 67 | 1e-12 |
| Signal peptidase I | U | Contig28 | Nham2252 | COG0681 | 76 | 3e-15 |
| Signal recognition particle GTPase | U | Contig26 | Nham4517 | COG0541 | 39 | 6e-04 |
| Signal recognition particle GTPase | U | Contig26 | Nham4525 | COG0541 | 41 | 6e-05 |
| Signal recognition particle GTPase | U | Contig27 | Nham4271 | COG0541 | 43 | 2e-05 |
| Signal recognition particle GTPase | U | Contig27 | Nham4281 | COG0552 | 35 | 0.008 |
| Signal recognition particle GTPase | U | Contig27 | Nham4281 | COG0541 | 40 | 2e-04 |
| Signal recognition particle GTPase | U | Contig28 | Nham0402 | COG0552 | 344 | 6e-96 |
| Signal recognition particle GTPase | U | Contig28 | Nham0402 | COG0541 | 221 | 7e-59 |
| Signal recognition particle GTPase | U | Contig28 | Nham0572 | COG0541 | 37 | 0.002 |
| Signal recognition particle GTPase | U | Contig28 | Nham2640 | COG0552 | 36 | 0.003 |
| Signal recognition particle GTPase | U | Contig28 | Nham2882 | COG0541 | 34 | 0.009 |
| Signal recognition particle GTPase | U | Contig28 | Nham3578 | COG0552 | 205 | 5e-54 |
| Signal recognition particle GTPase | U | Contig28 | Nham3578 | COG0541 | 560 | 1.0e-161 |
| Signal recognition particle GTPase | U | Contig28 | Nham3861 | COG0552 | 34 | 0.007 |
| Tfp pilus assembly protein ATPase PilU | U | Contig25 | Nham4569 | COG5008 | 55 | 5e-09 |
| Tfp pilus assembly protein ATPase PilU | U | Contig26 | Nham4437 | COG5008 | 50 | 3e-07 |
| Tfp pilus assembly protein ATPase PilU | U | Contig26 | Nham4523 | COG5008 | 37 | 0.004 |
| Tfp pilus assembly protein ATPase PilU | U | Contig28 | Nham0388 | COG5008 | 64 | 2e-11 |
| Tfp pilus assembly protein ATPase PilU | U | Contig28 | Nham0741 | COG5008 | 113 | 4e-26 |
| Tfp pilus assembly protein FimT | U | Contig28 | Nham0738 | COG4970 | 54 | 5e-09 |
| Tfp pilus assembly protein FimV | U | Contig28 | Nham0031 | COG3170 | 38 | 0.003 |
| Tfp pilus assembly protein FimV | U | Contig28 | Nham0725 | COG3170 | 39 | 0.005 |
| Tfp pilus assembly protein FimV | U | Contig28 | Nham1389 | COG3170 | 41 | 7e-04 |
| Tfp pilus assembly protein major pilin PilA | U | Contig28 | Nham0738 | COG4969 | 34 | 0.005 |
| Tfp pilus assembly protein major pilin PilA | U | Contig28 | Nham0739 | COG4969 | 39 | 2e-04 |
| Tfp pilus assembly protein PilE | U | Contig28 | Nham0737 | COG4968 | 36 | 0.001 |
| Tfp pilus assembly protein PilE | U | Contig28 | Nham0738 | COG4968 | 34 | 0.005 |
| Tfp pilus assembly protein PilE | U | Contig28 | Nham0739 | COG4968 | 41 | 5e-05 |
| Tfp pilus assembly protein PilF | U | Contig28 | Nham0385 | COG3063 | 37 | 0.001 |
| Tfp pilus assembly protein PilF | U | Contig28 | Nham1215 | COG3063 | 43 | 2e-05 |
| Tfp pilus assembly protein PilF | U | Contig28 | Nham1574 | COG3063 | 50 | 2e-07 |
| Tfp pilus assembly protein PilF | U | Contig28 | Nham3088 | COG3063 | 40 | 4e-04 |
| Tfp pilus assembly protein PilF | U | Contig28 | Nham3217 | COG3063 | 42 | 1e-04 |
| Tfp pilus assembly protein PilN | U | Contig28 | Nham0734 | COG3166 | 43 | 2e-05 |
| Tfp pilus assembly protein pilus retraction ATPase PilT | U | Contig25 | Nham4569 | COG2805 | 67 | 2e-12 |
| Tfp pilus assembly protein pilus retraction ATPase PilT | U | Contig26 | Nham4437 | COG2805 | 57 | 2e-09 |
| Tfp pilus assembly protein pilus retraction ATPase PilT | U | Contig28 | Nham0388 | COG2805 | 70 | 4e-13 |
| Tfp pilus assembly protein pilus retraction ATPase PilT | U | Contig28 | Nham0741 | COG2805 | 184 | 2e-47 |
| Tfp pilus assembly protein PilV | U | Contig28 | Nham0737 | COG4967 | 33 | 0.007 |
| Tfp pilus assembly protein tip-associated adhesin PilY1 | U | Contig28 | Nham0584 | COG3419 | 34 | 0.006 |
| Type III secretory pathway component EscR | U | Contig28 | Nham1390 | COG4790 | 178 | 3e-46 |
| Type III secretory pathway component EscS | U | Contig28 | Nham1395 | COG4794 | 52 | 1e-08 |
| Type III secretory pathway component EscT | U | Contig28 | Nham1396 | COG4791 | 78 | 6e-16 |
| Type III secretory pathway component EscU | U | Contig28 | Nham1397 | COG4792 | 217 | 9e-58 |
| Type III secretory pathway component EscU | U | Contig28 | Nham1578 | COG4792 | 56 | 4e-10 |
| Type III secretory pathway component EscV | U | Contig28 | Nham3367 | COG4789 | 506 | 1.0e-144 |
| Type III secretory pathway lipoprotein EscJ | U | Contig28 | Nham0691 | COG4669 | 62 | 1e-10 |
| Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB | U | Contig25 | Nham4569 | COG2804 | 83 | 2e-17 |
| Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB | U | Contig26 | Nham4437 | COG2804 | 73 | 2e-14 |
| Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB | U | Contig28 | Nham0090 | COG2804 | 38 | 0.004 |
| Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB | U | Contig28 | Nham0388 | COG2804 | 79 | 6e-16 |
| Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB | U | Contig28 | Nham0741 | COG2804 | 481 | 1.0e-137 |
| Type II secretory pathway component ExeA (predicted ATPase) | U | Contig28 | Nham0054 | COG3267 | 36 | 0.005 |
| Type II secretory pathway component HofQ | U | Contig28 | Nham0391 | COG4796 | 95 | 7e-21 |
| Type II secretory pathway component HofQ | U | Contig28 | Nham0742 | COG4796 | 116 | 5e-27 |
| Type II secretory pathway component PulC | U | Contig28 | Nham1441 | COG3031 | 35 | 0.009 |
| Type II secretory pathway component PulD | U | Contig28 | Nham0391 | COG1450 | 137 | 2e-33 |
| Type II secretory pathway component PulD | U | Contig28 | Nham0742 | COG1450 | 196 | 4e-51 |
| Type II secretory pathway component PulF | U | Contig28 | Nham0740 | COG1459 | 262 | 4e-71 |
| Type II secretory pathway component PulJ | U | Contig28 | Nham0736 | COG4795 | 40 | 1e-04 |
| Type II secretory pathway component PulK | U | Contig28 | Nham0735 | COG3156 | 77 | 1e-15 |
| Type II secretory pathway prepilin signal peptidase PulO and related peptidase | U | Contig28 | Nham0731 | COG1989 | 55 | 2e-09 |
| Type II secretory pathway pseudopilin PulG | U | Contig28 | Nham0736 | COG2165 | 38 | 9e-04 |
| Type II secretory pathway pseudopilin PulG | U | Contig28 | Nham0737 | COG2165 | 36 | 0.001 |
| Type II secretory pathway pseudopilin PulG | U | Contig28 | Nham0738 | COG2165 | 45 | 2e-06 |
| Type II secretory pathway pseudopilin PulG | U | Contig28 | Nham0739 | COG2165 | 72 | 3e-14 |
| Type IV secretory pathway component VirB8 protein | U | Contig26 | Nham4440 | COG3736 | 200 | 8e-53 |
| Type IV secretory pathway protease TraF | U | Contig25 | Nham4541 | COG4959 | 122 | 1e-29 |
| Type IV secretory pathway TrbD protein | U | Contig25 | Nham4567 | COG5268 | 93 | 5e-21 |
| Type IV secretory pathway TrbF protein | U | Contig25 | Nham4562 | COG3701 | 259 | 8e-71 |
| Type IV secretory pathway TrbL protein | U | Contig25 | Nham4563 | COG3846 | 167 | 1e-42 |
| Type IV secretory pathway TrbL protein | U | Contig28 | Nham3191 | COG3846 | 41 | 1e-04 |
| Type IV secretory pathway VirB10 protein | U | Contig25 | Nham4559 | COG2948 | 201 | 7e-53 |
| Type IV secretory pathway VirB10 protein | U | Contig26 | Nham4438 | COG2948 | 194 | 1e-50 |
| Type IV secretory pathway VirB10 protein | U | Contig28 | Nham3513 | COG2948 | 36 | 0.004 |
| Type IV secretory pathway VirB11 protein involved in flagella biosynthesis | U | Contig25 | Nham4569 | COG0630 | 163 | 2e-41 |
| Type IV secretory pathway VirB11 protein involved in flagella biosynthesis | U | Contig26 | Nham4437 | COG0630 | 227 | 7e-61 |
| Type IV secretory pathway VirB11 protein involved in flagella biosynthesis | U | Contig28 | Nham0388 | COG0630 | 216 | 2e-57 |
| Type IV secretory pathway VirB11 protein involved in flagella biosynthesis | U | Contig28 | Nham0741 | COG0630 | 84 | 4e-17 |
| Type IV secretory pathway VirB11 protein involved in flagella biosynthesis | U | Contig28 | Nham1534 | COG0630 | 41 | 3e-04 |
| Type IV secretory pathway VirB2 protein (pilin) | U | Contig25 | Nham4568 | COG3838 | 58 | 2e-10 |
| Type IV secretory pathway VirB2 protein (pilin) | U | Contig26 | Nham4447 | COG3838 | 52 | 8e-09 |
| Type IV secretory pathway VirB3 protein | U | Contig26 | Nham4446 | COG3702 | 80 | 3e-17 |
| Type IV secretory pathway VirB4 protein | U | Contig25 | Nham4566 | COG3451 | 599 | 1.0e-172 |
| Type IV secretory pathway VirB4 protein | U | Contig26 | Nham4445 | COG3451 | 678 | 0.0 |
| Type IV secretory pathway VirB4 protein | U | Contig26 | Nham4523 | COG3451 | 41 | 2e-04 |
| Type IV secretory pathway VirB4 protein | U | Contig28 | Nham0593 | COG3451 | 39 | 0.001 |
| Type IV secretory pathway VirB4 protein | U | Contig28 | Nham1508 | COG3451 | 36 | 0.007 |
| Type IV secretory pathway VirB4 protein | U | Contig28 | Nham1534 | COG3451 | 39 | 0.001 |
| Type IV secretory pathway VirB4 protein | U | Contig28 | Nham2631 | COG3451 | 41 | 2e-04 |
| Type IV secretory pathway VirB6 protein | U | Contig26 | Nham4441 | COG3704 | 127 | 1e-30 |
| Type IV secretory pathway VirB9 protein | U | Contig25 | Nham4561 | COG3504 | 183 | 1e-47 |
| Type IV secretory pathway VirB9 protein | U | Contig26 | Nham4439 | COG3504 | 164 | 5e-42 |
| Type IV secretory pathway VirD2 pilin (relaxase) | U | Contig26 | Nham4527 | COG3843 | 67 | 7e-12 |
| Type IV secretory pathway VirD2 pilin (relaxase) | U | Contig27 | Nham4269 | COG3843 | 70 | 9e-13 |
| Type IV secretory pathway VirD4 protein | U | Contig25 | Nham4672 | COG3505 | 360 | 1.0e-100 |
| Type IV secretory pathway VirD4 protein | U | Contig26 | Nham4436 | COG3505 | 340 | 3e-94 |
| Type IV secretory pathway VirD4 protein | U | Contig28 | Nham0295 | COG3505 | 50 | 2e-07 |
| Type IV secretory pathway VirD4 protein | U | Contig28 | Nham0593 | COG3505 | 217 | 2e-57 |
| Type V secretory pathway adhesin AidA | U | Contig28 | Nham1341 | COG3468 | 94 | 5e-20 |
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