Signal Transduction Mechanisms

COG Name	Group	Contig	Gene	COG ID	Score	Evalue
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	Contig28	Nham0202	COG0834	134	9e-33
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	Contig28	Nham2071	COG0834	120	1e-28
ABC-type amino acid transport/signal transduction systems periplasmic component/domain	T	Contig28	Nham3679	COG0834	97	2e-21
Adenylate cyclase family 3 (some protein contain HAMP domain)	T	Contig28	Nham2169	COG2114	104	3e-23
Adenylate cyclase family 3 (some protein contain HAMP domain)	T	Contig28	Nham2973	COG2114	98	3e-21
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)	T	Contig28	Nham0875	COG1366	40	7e-04
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)	T	Contig28	Nham1108	COG1366	40	7e-04
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig28	Nham0442	COG2172	38	0.003
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig28	Nham0997	COG2172	40	4e-04
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig28	Nham1886	COG2172	36	0.008
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig28	Nham2190	COG2172	37	0.005
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig28	Nham2192	COG2172	47	2e-06
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig28	Nham2534	COG2172	40	3e-04
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig28	Nham3294	COG2172	39	7e-04
Anti-sigma regulatory factor (Ser/Thr protein kinase)	T	Contig28	Nham3684	COG2172	43	4e-05
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0053	COG4251	102	1e-22
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0129	COG4251	117	3e-27
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0230	COG4251	55	1e-08
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0235	COG4251	74	4e-14
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0274	COG4251	100	6e-22
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0349	COG4251	83	9e-17
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0442	COG4251	91	2e-19
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0634	COG4251	108	7e-25
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0884	COG4251	85	2e-17
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham0997	COG4251	94	2e-20
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1165	COG4251	37	0.002
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1249	COG4251	81	5e-16
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1398	COG4251	80	5e-16
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1434	COG4251	46	7e-06
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1447	COG4251	75	1e-14
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1449	COG4251	101	2e-22
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1469	COG4251	81	2e-16
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1836	COG4251	77	2e-15
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1838	COG4251	68	2e-12
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1886	COG4251	60	3e-10
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham1907	COG4251	90	3e-19
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham2177	COG4251	62	2e-10
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham2190	COG4251	118	1e-27
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham2192	COG4251	43	2e-05
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham2534	COG4251	35	0.007
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham2623	COG4251	103	6e-23
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham2991	COG4251	105	2e-23
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3136	COG4251	68	1e-12
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3294	COG4251	72	1e-13
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3295	COG4251	87	4e-18
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3485	COG4251	88	1e-18
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3488	COG4251	60	3e-10
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3684	COG4251	105	9e-24
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3685	COG4251	69	8e-13
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3706	COG4251	79	6e-16
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3783	COG4251	39	0.002
Bacteriophytochrome (light-regulated signal transduction histidine kinase)	T	Contig28	Nham3818	COG4251	38	7e-04
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig26	Nham4375	COG0664	121	6e-29
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham0093	COG0664	74	4e-15
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham0645	COG0664	60	1e-10
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham0652	COG0664	50	2e-07
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham0870	COG0664	118	4e-28
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham1258	COG0664	122	3e-29
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham1374	COG0664	86	8e-18
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham1537	COG0664	84	8e-18
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham1951	COG0664	125	3e-30
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham2535	COG0664	116	2e-27
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham2537	COG0664	82	4e-17
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	T	Contig28	Nham2812	COG0664	133	1e-32
CBS-domain-containing membrane protein	T	Contig26	Nham4373	COG3448	54	5e-09
CBS-domain-containing membrane protein	T	Contig28	Nham0859	COG3448	52	3e-08
CBS-domain-containing membrane protein	T	Contig28	Nham1649	COG3448	48	3e-07
CBS-domain-containing membrane protein	T	Contig28	Nham1897	COG3448	55	4e-09
CBS-domain-containing membrane protein	T	Contig28	Nham1902	COG3448	76	2e-15
CBS-domain-containing membrane protein	T	Contig28	Nham1912	COG3448	68	4e-13
CBS-domain-containing membrane protein	T	Contig28	Nham1918	COG3448	70	7e-14
CBS-domain-containing membrane protein	T	Contig28	Nham1933	COG3448	77	1e-15
CBS-domain-containing membrane protein	T	Contig28	Nham1947	COG3448	65	6e-12
CBS-domain-containing membrane protein	T	Contig28	Nham2540	COG3448	41	4e-05
CBS-domain-containing membrane protein	T	Contig28	Nham2546	COG3448	48	2e-06
CBS-domain-containing membrane protein	T	Contig28	Nham3413	COG3448	42	8e-05
CBS-domain-containing membrane protein	T	Contig28	Nham3524	COG3448	41	2e-04
Chemotaxis protein	T	Contig28	Nham3193	COG3143	42	4e-05
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham0129	COG0643	44	5e-05
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham0235	COG0643	38	0.003
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham0349	COG0643	46	8e-06
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham0442	COG0643	40	7e-04
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham0634	COG0643	38	0.002
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham0884	COG0643	42	1e-04
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham1398	COG0643	49	1e-06
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham1449	COG0643	37	0.005
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham1661	COG0643	37	0.001
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham1838	COG0643	40	6e-04
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham1907	COG0643	41	1e-04
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham2177	COG0643	39	0.001
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham2190	COG0643	47	4e-06
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham2623	COG0643	54	4e-08
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham3295	COG0643	44	2e-05
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham3375	COG0643	43	1e-05
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham3376	COG0643	506	1.0e-144
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham3485	COG0643	44	2e-05
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham3488	COG0643	44	2e-05
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham3684	COG0643	46	5e-06
Chemotaxis protein histidine kinase and related kinase	T	Contig28	Nham3685	COG0643	54	4e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig25	Nham4605	COG2201	154	4e-38
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham0094	COG2201	53	2e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham0235	COG2201	49	1e-06
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham0273	COG2201	40	1e-04
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham0443	COG2201	76	1e-15
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham0640	COG2201	52	3e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham0665	COG2201	43	6e-06
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham0872	COG2201	40	1e-04
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham0998	COG2201	46	3e-06
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1143	COG2201	38	2e-04
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1224	COG2201	51	1e-07
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1398	COG2201	46	1e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1433	COG2201	53	3e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1442	COG2201	39	2e-04
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1662	COG2201	58	6e-10
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1837	COG2201	50	4e-07
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1839	COG2201	63	4e-11
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1885	COG2201	51	6e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham1906	COG2201	48	4e-07
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham2191	COG2201	42	1e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham2192	COG2201	53	4e-08
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham2442	COG2201	72	1e-13
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham2443	COG2201	60	7e-11
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham2990	COG2201	60	1e-10
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3137	COG2201	60	2e-10
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3160	COG2201	45	2e-06
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3293	COG2201	43	3e-05
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3296	COG2201	45	5e-06
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3371	COG2201	56	2e-09
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3373	COG2201	274	7e-75
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3374	COG2201	76	5e-16
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3376	COG2201	53	1e-07
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3570	COG2201	34	0.009
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3683	COG2201	65	4e-12
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain	T	Contig28	Nham3990	COG2201	155	7e-39
Chemotaxis signal transduction protein	T	Contig28	Nham3375	COG0835	95	2e-21
Chemotaxis signal transduction protein	T	Contig28	Nham3376	COG0835	41	3e-04
DNA-binding transcriptional activator of the SARP family	T	Contig28	Nham2973	COG3629	90	7e-19
DnaK suppressor protein	T	Contig28	Nham1346	COG1734	112	1e-26
FOG: CheY-like receiver	T	Contig27	Nham4155	COG0784	50	6e-08
FOG: CheY-like receiver	T	Contig28	Nham0094	COG0784	87	1e-18
FOG: CheY-like receiver	T	Contig28	Nham0129	COG0784	85	3e-17
FOG: CheY-like receiver	T	Contig28	Nham0231	COG0784	64	5e-12
FOG: CheY-like receiver	T	Contig28	Nham0235	COG0784	83	8e-17
FOG: CheY-like receiver	T	Contig28	Nham0273	COG0784	61	6e-11
FOG: CheY-like receiver	T	Contig28	Nham0274	COG0784	53	1e-07
FOG: CheY-like receiver	T	Contig28	Nham0349	COG0784	71	3e-13
FOG: CheY-like receiver	T	Contig28	Nham0443	COG0784	81	5e-17
FOG: CheY-like receiver	T	Contig28	Nham0640	COG0784	93	2e-20
FOG: CheY-like receiver	T	Contig28	Nham0646	COG0784	49	2e-07
FOG: CheY-like receiver	T	Contig28	Nham0665	COG0784	61	2e-11
FOG: CheY-like receiver	T	Contig28	Nham0687	COG0784	43	5e-05
FOG: CheY-like receiver	T	Contig28	Nham0872	COG0784	78	5e-16
FOG: CheY-like receiver	T	Contig28	Nham0873	COG0784	69	1e-13
FOG: CheY-like receiver	T	Contig28	Nham0998	COG0784	81	6e-17
FOG: CheY-like receiver	T	Contig28	Nham1143	COG0784	65	2e-12
FOG: CheY-like receiver	T	Contig28	Nham1224	COG0784	80	5e-16
FOG: CheY-like receiver	T	Contig28	Nham1398	COG0784	78	3e-15
FOG: CheY-like receiver	T	Contig28	Nham1433	COG0784	91	4e-20
FOG: CheY-like receiver	T	Contig28	Nham1442	COG0784	74	6e-15
FOG: CheY-like receiver	T	Contig28	Nham1662	COG0784	85	4e-18
FOG: CheY-like receiver	T	Contig28	Nham1793	COG0784	54	2e-09
FOG: CheY-like receiver	T	Contig28	Nham1837	COG0784	80	4e-16
FOG: CheY-like receiver	T	Contig28	Nham1839	COG0784	78	1e-15
FOG: CheY-like receiver	T	Contig28	Nham1885	COG0784	92	3e-20
FOG: CheY-like receiver	T	Contig28	Nham1905	COG0784	70	6e-14
FOG: CheY-like receiver	T	Contig28	Nham1906	COG0784	74	5e-15
FOG: CheY-like receiver	T	Contig28	Nham2191	COG0784	65	2e-12
FOG: CheY-like receiver	T	Contig28	Nham2192	COG0784	69	5e-13
FOG: CheY-like receiver	T	Contig28	Nham2442	COG0784	88	1e-18
FOG: CheY-like receiver	T	Contig28	Nham2443	COG0784	86	8e-19
FOG: CheY-like receiver	T	Contig28	Nham2933	COG0784	35	0.008
FOG: CheY-like receiver	T	Contig28	Nham2990	COG0784	69	4e-13
FOG: CheY-like receiver	T	Contig28	Nham3137	COG0784	83	1e-17
FOG: CheY-like receiver	T	Contig28	Nham3160	COG0784	74	4e-15
FOG: CheY-like receiver	T	Contig28	Nham3293	COG0784	76	2e-15
FOG: CheY-like receiver	T	Contig28	Nham3296	COG0784	76	2e-15
FOG: CheY-like receiver	T	Contig28	Nham3371	COG0784	85	6e-18
FOG: CheY-like receiver	T	Contig28	Nham3373	COG0784	71	2e-13
FOG: CheY-like receiver	T	Contig28	Nham3374	COG0784	81	2e-17
FOG: CheY-like receiver	T	Contig28	Nham3376	COG0784	80	9e-16
FOG: CheY-like receiver	T	Contig28	Nham3485	COG0784	68	2e-12
FOG: CheY-like receiver	T	Contig28	Nham3488	COG0784	69	5e-13
FOG: CheY-like receiver	T	Contig28	Nham3660	COG0784	37	0.003
FOG: CheY-like receiver	T	Contig28	Nham3683	COG0784	80	1e-16
FOG: EAL domain	T	Contig28	Nham0628	COG2200	201	1e-52
FOG: EAL domain	T	Contig28	Nham1241	COG2200	299	5e-82
FOG: EAL domain	T	Contig28	Nham2933	COG2200	173	2e-44
FOG: EAL domain	T	Contig28	Nham3158	COG2200	121	1e-28
FOG: EAL domain	T	Contig28	Nham3276	COG2200	210	2e-55
FOG: EAL domain	T	Contig28	Nham3511	COG2200	266	7e-72
FOG: EAL domain	T	Contig28	Nham3549	COG2200	261	2e-70
FOG: EAL domain	T	Contig28	Nham3660	COG2200	145	5e-36
FOG: GAF domain	T	Contig27	Nham4144	COG2203	45	3e-05
FOG: GAF domain	T	Contig28	Nham0471	COG2203	45	2e-05
FOG: GAF domain	T	Contig28	Nham2991	COG2203	37	0.005
FOG: GAF domain	T	Contig28	Nham3882	COG2203	42	2e-04
FOG: GGDEF domain	T	Contig25	Nham4588	COG2199	146	4e-36
FOG: GGDEF domain	T	Contig28	Nham0628	COG2199	121	1e-28
FOG: GGDEF domain	T	Contig28	Nham1237	COG2199	119	1e-28
FOG: GGDEF domain	T	Contig28	Nham1241	COG2199	143	6e-35
FOG: GGDEF domain	T	Contig28	Nham2052	COG2199	43	4e-05
FOG: GGDEF domain	T	Contig28	Nham2322	COG2199	162	3e-41
FOG: GGDEF domain	T	Contig28	Nham2442	COG2199	154	1e-38
FOG: GGDEF domain	T	Contig28	Nham2861	COG2199	162	4e-41
FOG: GGDEF domain	T	Contig28	Nham3276	COG2199	147	2e-36
FOG: GGDEF domain	T	Contig28	Nham3511	COG2199	166	6e-42
FOG: GGDEF domain	T	Contig28	Nham3549	COG2199	138	2e-33
FOG: HAMP domain	T	Contig25	Nham4588	COG2770	45	2e-05
FOG: HAMP domain	T	Contig28	Nham0442	COG2770	36	0.009
FOG: HAMP domain	T	Contig28	Nham1447	COG2770	36	0.007
FOG: HPt domain	T	Contig28	Nham1319	COG2198	39	8e-05
FOG: HPt domain	T	Contig28	Nham3376	COG2198	40	7e-04
FOG: PAS/PAC domain	T	Contig28	Nham0080	COG2202	77	5e-15
FOG: PAS/PAC domain	T	Contig28	Nham0235	COG2202	62	2e-10
FOG: PAS/PAC domain	T	Contig28	Nham0362	COG2202	44	4e-06
FOG: PAS/PAC domain	T	Contig28	Nham1213	COG2202	66	8e-12
FOG: PAS/PAC domain	T	Contig28	Nham1241	COG2202	66	1e-11
FOG: PAS/PAC domain	T	Contig28	Nham1249	COG2202	47	5e-06
FOG: PAS/PAC domain	T	Contig28	Nham1398	COG2202	43	7e-05
FOG: PAS/PAC domain	T	Contig28	Nham1449	COG2202	44	3e-05
FOG: PAS/PAC domain	T	Contig28	Nham1907	COG2202	66	7e-12
FOG: PAS/PAC domain	T	Contig28	Nham2177	COG2202	60	6e-10
FOG: PAS/PAC domain	T	Contig28	Nham2623	COG2202	43	8e-05
FOG: PAS/PAC domain	T	Contig28	Nham3488	COG2202	60	3e-10
FOG: PAS/PAC domain	T	Contig28	Nham3549	COG2202	47	9e-06
FOG: PAS/PAC domain	T	Contig28	Nham3818	COG2202	38	0.001
Glutamine synthetase adenylyltransferase	T	Contig28	Nham1448	COG1391	757	0.0
Glycosyl transferase related to UDP-glucuronosyltransferase	T	Contig28	Nham1279	COG1819	55	9e-09
Guanosine polyphosphate pyrophosphohydrolase/synthetase	T	Contig28	Nham2255	COG0317	771	0.0
HD-GYP domain	T	Contig28	Nham1757	COG2206	37	0.003
HD-GYP domain	T	Contig28	Nham4035	COG2206	170	2e-43
Methyl-accepting chemotaxis protein	T	Contig28	Nham0354	COG0840	82	5e-17
Methyl-accepting chemotaxis protein	T	Contig28	Nham0772	COG0840	105	1e-23
Methyl-accepting chemotaxis protein	T	Contig28	Nham1045	COG0840	132	1e-31
Methyl-accepting chemotaxis protein	T	Contig28	Nham1080	COG0840	125	2e-29
Methyl-accepting chemotaxis protein	T	Contig28	Nham1447	COG0840	48	2e-06
Methylase of chemotaxis methyl-accepting protein	T	Contig25	Nham4605	COG1352	233	4e-62
Methylase of chemotaxis methyl-accepting protein	T	Contig28	Nham3372	COG1352	256	1e-69
Methylase of chemotaxis methyl-accepting protein	T	Contig28	Nham3990	COG1352	175	5e-45
Mn2+-dependent serine/threonine protein kinase	T	Contig28	Nham1803	COG3642	35	0.010
N-acyl-L-homoserine lactone synthetase	T	Contig25	Nham4570	COG3916	187	5e-49
N-acyl-L-homoserine lactone synthetase	T	Contig26	Nham4466	COG3916	129	2e-31
N-acyl-L-homoserine lactone synthetase	T	Contig28	Nham0959	COG3916	148	3e-37
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0053	COG2205	160	4e-40
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0129	COG2205	136	6e-33
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0230	COG2205	86	5e-18
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0235	COG2205	78	2e-15
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0274	COG2205	109	1e-24
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0349	COG2205	90	5e-19
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0442	COG2205	138	1e-33
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0634	COG2205	129	3e-31
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0884	COG2205	112	7e-26
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham0997	COG2205	119	4e-28
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1249	COG2205	100	5e-22
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1398	COG2205	98	2e-21
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1434	COG2205	58	1e-09
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1447	COG2205	106	5e-24
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1449	COG2205	140	4e-34
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1469	COG2205	118	1e-27
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1836	COG2205	81	1e-16
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1838	COG2205	81	2e-16
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1886	COG2205	82	9e-17
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham1907	COG2205	117	1e-27
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham2177	COG2205	75	3e-14
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham2190	COG2205	109	6e-25
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham2192	COG2205	39	6e-04
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham2534	COG2205	38	0.002
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham2623	COG2205	165	7e-42
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham2991	COG2205	909	0.0
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3136	COG2205	108	7e-25
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3294	COG2205	101	8e-23
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3295	COG2205	129	4e-31
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3376	COG2205	56	1e-08
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3485	COG2205	98	1e-21
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3488	COG2205	90	3e-19
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3684	COG2205	143	4e-35
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3685	COG2205	73	1e-13
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3706	COG2205	81	2e-16
Osmosensitive K+ channel histidine kinase	T	Contig28	Nham3783	COG2205	89	2e-18
Phage shock protein A (IM30) suppresses sigma54-dependent transcription	T	Contig28	Nham3542	COG1842	35	0.008
Phosphate starvation-inducible protein PhoH predicted ATPase	T	Contig28	Nham0022	COG1702	349	2e-97
Phosphohistidine phosphatase SixA	T	Contig28	Nham0159	COG2062	51	7e-08
Phosphohistidine phosphatase SixA	T	Contig28	Nham0769	COG2062	46	3e-06
Phosphohistidine phosphatase SixA	T	Contig28	Nham1328	COG2062	122	2e-29
Phosphohistidine swiveling domain	T	Contig28	Nham0471	COG3848	45	3e-05
Phosphohistidine swiveling domain	T	Contig28	Nham3505	COG3848	50	7e-07
Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	T	Contig28	Nham0171	COG1762	126	1e-30
Predicted ATPase related to phosphate starvation-inducible protein PhoH	T	Contig28	Nham0022	COG1875	152	4e-38
Predicted ATPase related to phosphate starvation-inducible protein PhoH	T	Contig28	Nham0426	COG1875	36	0.003
Predicted integral membrane sensor domain	T	Contig27	Nham4209	COG3447	62	1e-10
Predicted integral membrane sensor domain	T	Contig28	Nham3802	COG3447	56	7e-09
Predicted membrane GTPase involved in stress response	T	Contig28	Nham0031	COG1217	87	5e-18
Predicted membrane GTPase involved in stress response	T	Contig28	Nham0438	COG1217	208	7e-55
Predicted membrane GTPase involved in stress response	T	Contig28	Nham0644	COG1217	959	0.0
Predicted membrane GTPase involved in stress response	T	Contig28	Nham1106	COG1217	51	2e-07
Predicted membrane GTPase involved in stress response	T	Contig28	Nham1542	COG1217	127	2e-30
Predicted membrane GTPase involved in stress response	T	Contig28	Nham1543	COG1217	126	2e-30
Predicted membrane GTPase involved in stress response	T	Contig28	Nham1680	COG1217	91	2e-19
Predicted membrane GTPase involved in stress response	T	Contig28	Nham2250	COG1217	36	0.003
Predicted membrane GTPase involved in stress response	T	Contig28	Nham3564	COG1217	85	1e-17
Predicted periplasmic ligand-binding sensor domain	T	Contig25	Nham4588	COG5278	43	4e-05
Predicted periplasmic ligand-binding sensor domain	T	Contig28	Nham2190	COG5278	94	2e-20
Predicted periplasmic ligand-binding sensor domain	T	Contig28	Nham2378	COG3292	36	0.007
Predicted periplasmic ligand-binding sensor domain	T	Contig28	Nham3573	COG3614	61	3e-10
Predicted secreted protein containing a PDZ domain	T	Contig28	Nham1701	COG3480	36	0.006
Predicted secreted protein containing a PDZ domain	T	Contig28	Nham2227	COG3480	59	2e-09
Predicted secreted protein containing a PDZ domain	T	Contig28	Nham2725	COG3480	42	1e-04
Predicted Ser/Thr protein kinase	T	Contig28	Nham1803	COG2112	53	3e-08
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain	T	Contig28	Nham2251	COG3887	37	0.001
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig25	Nham4588	COG5001	85	2e-17
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham0628	COG5001	190	3e-49
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham1237	COG5001	87	1e-18
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham1241	COG5001	353	3e-98
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham2322	COG5001	99	6e-22
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham2442	COG5001	89	5e-19
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham2861	COG5001	103	2e-23
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham2933	COG5001	95	9e-21
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham3158	COG5001	50	3e-07
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham3276	COG5001	285	6e-78
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham3511	COG5001	335	6e-93
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham3549	COG5001	299	5e-82
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain	T	Contig28	Nham3660	COG5001	81	1e-16
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig26	Nham4373	COG2905	37	6e-04
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham0093	COG2905	43	7e-06
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham0652	COG2905	34	0.008
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham0859	COG2905	60	1e-10
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham1649	COG2905	59	1e-10
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham1897	COG2905	61	5e-11
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham1902	COG2905	73	2e-14
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham1912	COG2905	78	6e-16
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham1918	COG2905	42	2e-05
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham1933	COG2905	76	2e-15
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham1947	COG2905	65	3e-12
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham1951	COG2905	37	0.001
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham2540	COG2905	58	3e-10
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham2546	COG2905	63	5e-11
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham3413	COG2905	60	3e-10
Predicted signal-transduction protein containing cAMP-binding and CBS domains	T	Contig28	Nham3524	COG2905	36	0.006
Predicted signal transduction protein containing EAL and modified HD-GYP domains	T	Contig28	Nham0628	COG3434	37	0.004
Predicted signal transduction protein containing EAL and modified HD-GYP domains	T	Contig28	Nham1241	COG3434	43	8e-05
Predicted signal transduction protein containing EAL and modified HD-GYP domains	T	Contig28	Nham2933	COG3434	38	9e-04
Predicted signal transduction protein containing EAL and modified HD-GYP domains	T	Contig28	Nham3276	COG3434	37	0.004
Predicted signal transduction protein containing EAL and modified HD-GYP domains	T	Contig28	Nham3511	COG3434	39	0.001
Predicted signal transduction protein containing EAL and modified HD-GYP domains	T	Contig28	Nham3549	COG3434	39	0.001
Predicted signal transduction protein containing EAL and modified HD-GYP domains	T	Contig28	Nham3660	COG3434	39	8e-04
Predicted signal transduction protein containing sensor and EAL domains	T	Contig28	Nham0628	COG4943	126	5e-30
Predicted signal transduction protein containing sensor and EAL domains	T	Contig28	Nham1241	COG4943	187	4e-48
Predicted signal transduction protein containing sensor and EAL domains	T	Contig28	Nham2933	COG4943	123	3e-29
Predicted signal transduction protein containing sensor and EAL domains	T	Contig28	Nham3158	COG4943	73	4e-14
Predicted signal transduction protein containing sensor and EAL domains	T	Contig28	Nham3276	COG4943	150	3e-37
Predicted signal transduction protein containing sensor and EAL domains	T	Contig28	Nham3511	COG4943	158	2e-39
Predicted signal transduction protein containing sensor and EAL domains	T	Contig28	Nham3549	COG4943	202	1e-52
Predicted signal transduction protein containing sensor and EAL domains	T	Contig28	Nham3660	COG4943	111	1e-25
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham0053	COG2972	52	2e-07
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham0230	COG2972	39	7e-04
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham0274	COG2972	42	3e-04
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham0349	COG2972	45	2e-05
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham0442	COG2972	46	9e-06
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham0634	COG2972	50	2e-07
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham1434	COG2972	42	1e-04
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham1447	COG2972	49	1e-06
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham1449	COG2972	48	3e-06
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham1838	COG2972	42	2e-04
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham1886	COG2972	44	3e-05
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham1907	COG2972	40	3e-04
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham2177	COG2972	41	4e-04
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham2190	COG2972	47	2e-06
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham2192	COG2972	43	4e-05
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham2534	COG2972	35	0.010
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham2623	COG2972	58	2e-09
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham2991	COG2972	45	3e-05
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham3136	COG2972	40	4e-04
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham3295	COG2972	41	2e-04
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham3376	COG2972	39	0.002
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham3488	COG2972	52	1e-07
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham3684	COG2972	45	1e-05
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham3685	COG2972	44	5e-05
Predicted signal transduction protein with a C-terminal ATPase domain	T	Contig28	Nham3706	COG2972	42	1e-04
Predicted transmembrane sensor domain	T	Contig28	Nham2169	COG4252	138	1e-33
Protein-tyrosine-phosphatase	T	Contig26	Nham4431	COG0394	105	3e-24
Protein-tyrosine-phosphatase	T	Contig28	Nham0288	COG0394	112	1e-26
Putative regulator of cell autolysis	T	Contig28	Nham0053	COG3275	42	2e-04
Putative regulator of cell autolysis	T	Contig28	Nham0634	COG3275	37	0.003
Putative regulator of cell autolysis	T	Contig28	Nham0884	COG3275	36	0.009
Putative regulator of cell autolysis	T	Contig28	Nham1838	COG3275	43	1e-04
Putative regulator of cell autolysis	T	Contig28	Nham2190	COG3275	38	0.002
Putative regulator of cell autolysis	T	Contig28	Nham2192	COG3275	37	0.002
Putative regulator of cell autolysis	T	Contig28	Nham2534	COG3275	39	6e-04
Putative regulator of cell autolysis	T	Contig28	Nham2623	COG3275	47	5e-06
Putative Ser protein kinase	T	Contig28	Nham0976	COG2766	888	0.0
RecA-superfamily ATPase implicated in signal transduction	T	Contig28	Nham0346	COG0467	34	0.007
RecA-superfamily ATPase implicated in signal transduction	T	Contig28	Nham0402	COG0467	36	0.005
RecA-superfamily ATPase implicated in signal transduction	T	Contig28	Nham1616	COG0467	51	1e-07
RecA-superfamily ATPase implicated in signal transduction	T	Contig28	Nham2031	COG0467	41	3e-04
RecA-superfamily ATPase implicated in signal transduction	T	Contig28	Nham2289	COG0467	39	0.001
RecA-superfamily ATPase implicated in signal transduction	T	Contig28	Nham2291	COG0467	80	4e-16
RecA-superfamily ATPase implicated in signal transduction	T	Contig28	Nham3347	COG0467	39	6e-04
Regulator of polyketide synthase expression	T	Contig28	Nham0231	COG2508	35	0.004
Regulator of polyketide synthase expression	T	Contig28	Nham3644	COG2508	35	0.009
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0094	COG4567	56	2e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0231	COG4567	240	4e-65
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0235	COG4567	45	2e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0273	COG4567	36	0.002
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0349	COG4567	50	7e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0443	COG4567	58	5e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0640	COG4567	60	2e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0646	COG4567	38	3e-04
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0665	COG4567	40	8e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0872	COG4567	63	1e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0873	COG4567	53	5e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham0998	COG4567	60	1e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1143	COG4567	47	3e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1224	COG4567	51	2e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1398	COG4567	46	1e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1433	COG4567	66	2e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1442	COG4567	57	9e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1662	COG4567	41	6e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1793	COG4567	33	0.009
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1837	COG4567	63	3e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1839	COG4567	73	4e-14
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1885	COG4567	67	8e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1905	COG4567	50	4e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham1906	COG4567	58	4e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham2192	COG4567	61	1e-10
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham2442	COG4567	42	9e-05
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham2443	COG4567	49	9e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham2990	COG4567	65	4e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3137	COG4567	55	4e-09
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3160	COG4567	48	2e-07
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3293	COG4567	62	5e-11
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3296	COG4567	69	3e-13
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3371	COG4567	65	5e-12
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3373	COG4567	38	0.001
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3374	COG4567	50	6e-08
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3376	COG4567	49	1e-06
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3488	COG4567	37	0.003
Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain	T	Contig28	Nham3683	COG4567	63	2e-11
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig25	Nham4588	COG3706	140	2e-34
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig27	Nham4155	COG3706	34	0.003
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0094	COG3706	76	3e-15
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0129	COG3706	69	1e-12
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0231	COG3706	53	9e-09
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0235	COG3706	71	4e-13
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0273	COG3706	50	2e-07
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0349	COG3706	52	2e-07
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0443	COG3706	87	9e-19
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0628	COG3706	111	1e-25
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0640	COG3706	99	3e-22
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0646	COG3706	36	8e-04
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0665	COG3706	55	1e-09
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0687	COG3706	40	4e-04
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0872	COG3706	75	5e-15
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0873	COG3706	51	3e-08
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham0998	COG3706	83	2e-17
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1143	COG3706	58	2e-10
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1224	COG3706	66	5e-12
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1237	COG3706	103	1e-23
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1241	COG3706	91	4e-19
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1398	COG3706	53	7e-08
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1433	COG3706	90	1e-19
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1442	COG3706	68	4e-13
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1662	COG3706	83	1e-17
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1793	COG3706	35	0.002
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1837	COG3706	66	7e-12
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1839	COG3706	73	4e-14
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1885	COG3706	79	3e-16
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1905	COG3706	63	8e-12
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham1906	COG3706	65	4e-12
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham2191	COG3706	52	2e-08
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham2192	COG3706	62	8e-11
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham2322	COG3706	165	4e-42
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham2442	COG3706	428	1.0e-121
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham2443	COG3706	69	1e-13
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham2861	COG3706	146	2e-36
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham2990	COG3706	82	5e-17
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3137	COG3706	93	2e-20
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3160	COG3706	77	4e-16
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3276	COG3706	111	2e-25
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3293	COG3706	77	1e-15
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3296	COG3706	74	7e-15
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3371	COG3706	81	7e-17
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3373	COG3706	65	1e-11
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3374	COG3706	91	2e-20
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3376	COG3706	76	7e-15
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3485	COG3706	61	1e-10
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3488	COG3706	61	2e-10
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3511	COG3706	141	2e-34
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3549	COG3706	107	3e-24
Response regulator containing a CheY-like receiver domain and a GGDEF domain	T	Contig28	Nham3683	COG3706	82	4e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0094	COG3437	78	7e-16
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0129	COG3437	68	2e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0231	COG3437	65	5e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0235	COG3437	65	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0273	COG3437	49	3e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0349	COG3437	55	1e-08
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0443	COG3437	86	3e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0640	COG3437	100	2e-22
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0646	COG3437	40	6e-05
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0665	COG3437	67	4e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0872	COG3437	76	1e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0873	COG3437	62	1e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham0998	COG3437	83	2e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1143	COG3437	62	9e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1224	COG3437	66	7e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1398	COG3437	75	2e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1433	COG3437	88	5e-19
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1442	COG3437	63	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1662	COG3437	67	7e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1793	COG3437	47	4e-07
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1837	COG3437	68	1e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1839	COG3437	70	2e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1885	COG3437	84	7e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1905	COG3437	73	7e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham1906	COG3437	72	3e-14
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham2191	COG3437	60	7e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham2192	COG3437	57	2e-09
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham2442	COG3437	111	1e-25
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham2443	COG3437	72	9e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham2990	COG3437	75	5e-15
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3137	COG3437	83	2e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3160	COG3437	66	9e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3293	COG3437	68	4e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3296	COG3437	67	1e-12
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3371	COG3437	82	3e-17
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3373	COG3437	59	5e-10
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3374	COG3437	85	2e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3376	COG3437	66	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3485	COG3437	64	2e-11
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3488	COG3437	69	9e-13
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3570	COG3437	36	0.003
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham3683	COG3437	87	1e-18
Response regulator containing a CheY-like receiver domain and an HD-GYP domain	T	Contig28	Nham4035	COG3437	131	8e-32
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig25	Nham4558	COG2197	49	3e-07
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig26	Nham4396	COG2197	51	5e-08
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig26	Nham4435	COG2197	54	8e-09
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig27	Nham4155	COG2197	38	1e-04
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0094	COG2197	90	2e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0129	COG2197	63	8e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0231	COG2197	69	2e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0235	COG2197	67	6e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0273	COG2197	170	6e-44
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0274	COG2197	37	0.007
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0349	COG2197	50	8e-07
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0443	COG2197	89	3e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0640	COG2197	80	2e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0646	COG2197	38	3e-04
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0665	COG2197	58	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0687	COG2197	42	7e-05
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0872	COG2197	122	2e-29
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0873	COG2197	61	2e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham0998	COG2197	82	3e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1032	COG2197	88	4e-19
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1143	COG2197	57	3e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1224	COG2197	71	2e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1398	COG2197	62	2e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1433	COG2197	79	3e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1442	COG2197	70	2e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1662	COG2197	70	1e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1793	COG2197	40	6e-05
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1837	COG2197	70	4e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1839	COG2197	63	3e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1881	COG2197	73	1e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1885	COG2197	79	3e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1905	COG2197	53	8e-09
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham1906	COG2197	118	3e-28
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham2191	COG2197	62	3e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham2192	COG2197	65	8e-12
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham2442	COG2197	79	8e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham2443	COG2197	71	3e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham2943	COG2197	126	2e-30
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham2990	COG2197	74	8e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3000	COG2197	113	2e-26
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3137	COG2197	83	1e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3160	COG2197	68	2e-13
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3293	COG2197	77	9e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3296	COG2197	71	7e-14
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3371	COG2197	82	5e-17
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3373	COG2197	80	2e-16
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3374	COG2197	75	1e-15
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3376	COG2197	63	8e-11
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3485	COG2197	60	5e-10
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3488	COG2197	53	6e-08
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3570	COG2197	34	0.010
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain	T	Contig28	Nham3683	COG2197	72	5e-14
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig27	Nham4155	COG2204	50	7e-08
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig27	Nham4288	COG2204	36	0.005
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0094	COG2204	92	5e-20
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0129	COG2204	70	5e-13
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0231	COG2204	101	3e-23
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0235	COG2204	80	6e-16
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0273	COG2204	69	2e-13
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0274	COG2204	51	3e-07
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0349	COG2204	87	4e-18
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0443	COG2204	93	1e-20
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0640	COG2204	94	8e-21
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0646	COG2204	62	2e-11
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0665	COG2204	85	2e-18
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0681	COG2204	38	0.004
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0687	COG2204	412	1.0e-116
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0872	COG2204	112	2e-26
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0873	COG2204	83	7e-18
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham0998	COG2204	91	6e-20
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1143	COG2204	90	3e-20
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1224	COG2204	484	1.0e-138
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1398	COG2204	90	5e-19
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1433	COG2204	98	4e-22
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1442	COG2204	83	2e-17
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1573	COG2204	38	0.001
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1662	COG2204	76	2e-15
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1793	COG2204	52	1e-08
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1837	COG2204	510	1.0e-146
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1839	COG2204	499	1.0e-142
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1885	COG2204	103	1e-23
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1905	COG2204	80	6e-17
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham1906	COG2204	127	5e-31
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham2191	COG2204	62	1e-11
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham2192	COG2204	90	2e-19
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham2442	COG2204	87	2e-18
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham2443	COG2204	74	4e-15
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham2901	COG2204	54	2e-09
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham2933	COG2204	46	5e-06
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham2990	COG2204	95	4e-21
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3137	COG2204	89	2e-19
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3160	COG2204	77	5e-16
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3293	COG2204	82	3e-17
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3296	COG2204	93	2e-20
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3371	COG2204	93	2e-20
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3373	COG2204	68	8e-13
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3374	COG2204	81	3e-17
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3376	COG2204	74	6e-14
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3485	COG2204	70	3e-13
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3488	COG2204	87	4e-18
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3570	COG2204	40	2e-04
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3683	COG2204	95	6e-21
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham3684	COG2204	38	0.002
Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains	T	Contig28	Nham4035	COG2204	35	0.009
Response regulator containing CheY-like receiver and SARP domains	T	Contig27	Nham4155	COG3947	46	1e-06
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0094	COG3947	65	7e-12
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0129	COG3947	48	2e-06
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0231	COG3947	47	1e-06
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0235	COG3947	63	8e-11
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0273	COG3947	45	5e-06
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0349	COG3947	51	2e-07
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0443	COG3947	70	2e-13
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0640	COG3947	77	9e-16
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0665	COG3947	50	6e-08
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0872	COG3947	72	5e-14
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0873	COG3947	46	1e-06
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham0998	COG3947	57	1e-09
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1143	COG3947	52	1e-08
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1224	COG3947	52	1e-07
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1398	COG3947	54	4e-08
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1433	COG3947	73	1e-14
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1442	COG3947	60	2e-10
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1662	COG3947	55	3e-09
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1793	COG3947	41	2e-05
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1837	COG3947	66	5e-12
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1839	COG3947	65	1e-11
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1885	COG3947	67	1e-12
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1905	COG3947	56	1e-09
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham1906	COG3947	53	1e-08
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham2191	COG3947	44	4e-06
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham2192	COG3947	54	2e-08
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham2442	COG3947	56	7e-09
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham2443	COG3947	51	2e-08
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham2973	COG3947	79	1e-15
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham2990	COG3947	70	2e-13
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3137	COG3947	75	5e-15
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3160	COG3947	53	5e-09
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3293	COG3947	57	1e-09
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3296	COG3947	60	2e-10
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3371	COG3947	72	4e-14
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3373	COG3947	52	9e-08
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3374	COG3947	48	2e-07
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3376	COG3947	54	4e-08
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3485	COG3947	55	8e-09
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3488	COG3947	57	4e-09
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3570	COG3947	37	0.001
Response regulator containing CheY-like receiver and SARP domains	T	Contig28	Nham3683	COG3947	55	4e-09
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig27	Nham4155	COG4753	40	4e-05
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0094	COG4753	67	9e-13
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0129	COG4753	58	2e-09
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0160	COG4753	41	1e-04
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0231	COG4753	71	4e-14
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0235	COG4753	73	8e-14
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0273	COG4753	58	7e-10
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0349	COG4753	53	1e-07
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0443	COG4753	68	4e-13
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0640	COG4753	67	8e-13
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0646	COG4753	43	6e-06
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0665	COG4753	80	4e-17
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0872	COG4753	68	5e-13
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0873	COG4753	43	7e-06
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham0998	COG4753	65	6e-12
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1143	COG4753	67	4e-13
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1224	COG4753	60	4e-10
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1398	COG4753	83	1e-16
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1433	COG4753	64	7e-12
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1442	COG4753	55	4e-09
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1662	COG4753	87	1e-18
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1793	COG4753	44	4e-06
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1837	COG4753	75	8e-15
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1839	COG4753	79	6e-16
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1885	COG4753	63	2e-11
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1905	COG4753	54	4e-09
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham1906	COG4753	68	4e-13
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham2191	COG4753	43	8e-06
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham2192	COG4753	64	2e-11
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham2442	COG4753	78	2e-15
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham2443	COG4753	70	5e-14
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham2823	COG4753	71	1e-13
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham2990	COG4753	61	5e-11
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3137	COG4753	73	2e-14
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3160	COG4753	77	4e-16
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3293	COG4753	66	2e-12
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3296	COG4753	46	2e-06
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3371	COG4753	68	7e-13
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3373	COG4753	67	3e-12
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3374	COG4753	75	1e-15
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3376	COG4753	60	9e-10
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3485	COG4753	61	1e-10
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3488	COG4753	65	9e-12
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3570	COG4753	36	0.002
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain	T	Contig28	Nham3683	COG4753	57	2e-09
Response regulator	T	Contig25	Nham4558	COG4566	35	0.004
Response regulator	T	Contig26	Nham4435	COG4566	39	2e-04
Response regulator	T	Contig28	Nham0094	COG4566	73	2e-14
Response regulator	T	Contig28	Nham0129	COG4566	36	0.007
Response regulator	T	Contig28	Nham0231	COG4566	72	2e-14
Response regulator	T	Contig28	Nham0235	COG4566	59	1e-09
Response regulator	T	Contig28	Nham0273	COG4566	92	4e-20
Response regulator	T	Contig28	Nham0349	COG4566	59	1e-09
Response regulator	T	Contig28	Nham0443	COG4566	86	2e-18
Response regulator	T	Contig28	Nham0640	COG4566	71	6e-14
Response regulator	T	Contig28	Nham0665	COG4566	54	2e-09
Response regulator	T	Contig28	Nham0687	COG4566	36	0.008
Response regulator	T	Contig28	Nham0872	COG4566	216	1e-57
Response regulator	T	Contig28	Nham0873	COG4566	92	2e-20
Response regulator	T	Contig28	Nham0998	COG4566	57	1e-09
Response regulator	T	Contig28	Nham1032	COG4566	50	1e-07
Response regulator	T	Contig28	Nham1143	COG4566	61	2e-11
Response regulator	T	Contig28	Nham1224	COG4566	80	4e-16
Response regulator	T	Contig28	Nham1398	COG4566	56	7e-09
Response regulator	T	Contig28	Nham1433	COG4566	59	3e-10
Response regulator	T	Contig28	Nham1442	COG4566	58	6e-10
Response regulator	T	Contig28	Nham1662	COG4566	57	1e-09
Response regulator	T	Contig28	Nham1837	COG4566	71	2e-13
Response regulator	T	Contig28	Nham1839	COG4566	99	7e-22
Response regulator	T	Contig28	Nham1881	COG4566	50	1e-07
Response regulator	T	Contig28	Nham1885	COG4566	78	5e-16
Response regulator	T	Contig28	Nham1905	COG4566	88	2e-19
Response regulator	T	Contig28	Nham1906	COG4566	226	7e-61
Response regulator	T	Contig28	Nham2191	COG4566	44	4e-06
Response regulator	T	Contig28	Nham2192	COG4566	76	5e-15
Response regulator	T	Contig28	Nham2442	COG4566	62	8e-11
Response regulator	T	Contig28	Nham2443	COG4566	51	2e-08
Response regulator	T	Contig28	Nham2943	COG4566	63	4e-11
Response regulator	T	Contig28	Nham2990	COG4566	67	1e-12
Response regulator	T	Contig28	Nham3000	COG4566	50	2e-07
Response regulator	T	Contig28	Nham3137	COG4566	64	8e-12
Response regulator	T	Contig28	Nham3160	COG4566	49	1e-07
Response regulator	T	Contig28	Nham3293	COG4566	64	7e-12
Response regulator	T	Contig28	Nham3296	COG4566	67	9e-13
Response regulator	T	Contig28	Nham3371	COG4566	74	1e-14
Response regulator	T	Contig28	Nham3373	COG4566	52	7e-08
Response regulator	T	Contig28	Nham3374	COG4566	67	4e-13
Response regulator	T	Contig28	Nham3376	COG4566	49	1e-06
Response regulator	T	Contig28	Nham3485	COG4566	46	3e-06
Response regulator	T	Contig28	Nham3488	COG4566	54	3e-08
Response regulator	T	Contig28	Nham3683	COG4566	62	4e-11
Response regulator of citrate/malate metabolism	T	Contig27	Nham4155	COG4565	36	8e-04
Response regulator of citrate/malate metabolism	T	Contig28	Nham0094	COG4565	66	3e-12
Response regulator of citrate/malate metabolism	T	Contig28	Nham0129	COG4565	43	7e-05
Response regulator of citrate/malate metabolism	T	Contig28	Nham0231	COG4565	68	5e-13
Response regulator of citrate/malate metabolism	T	Contig28	Nham0235	COG4565	48	3e-06
Response regulator of citrate/malate metabolism	T	Contig28	Nham0273	COG4565	58	7e-10
Response regulator of citrate/malate metabolism	T	Contig28	Nham0274	COG4565	37	0.006
Response regulator of citrate/malate metabolism	T	Contig28	Nham0349	COG4565	67	5e-12
Response regulator of citrate/malate metabolism	T	Contig28	Nham0443	COG4565	51	6e-08
Response regulator of citrate/malate metabolism	T	Contig28	Nham0640	COG4565	61	5e-11
Response regulator of citrate/malate metabolism	T	Contig28	Nham0646	COG4565	47	6e-07
Response regulator of citrate/malate metabolism	T	Contig28	Nham0665	COG4565	41	3e-05
Response regulator of citrate/malate metabolism	T	Contig28	Nham0872	COG4565	66	2e-12
Response regulator of citrate/malate metabolism	T	Contig28	Nham0873	COG4565	43	1e-05
Response regulator of citrate/malate metabolism	T	Contig28	Nham0998	COG4565	59	2e-10
Response regulator of citrate/malate metabolism	T	Contig28	Nham1143	COG4565	43	6e-06
Response regulator of citrate/malate metabolism	T	Contig28	Nham1224	COG4565	62	9e-11
Response regulator of citrate/malate metabolism	T	Contig28	Nham1398	COG4565	51	3e-07
Response regulator of citrate/malate metabolism	T	Contig28	Nham1433	COG4565	60	2e-10
Response regulator of citrate/malate metabolism	T	Contig28	Nham1442	COG4565	56	2e-09
Response regulator of citrate/malate metabolism	T	Contig28	Nham1662	COG4565	49	2e-07
Response regulator of citrate/malate metabolism	T	Contig28	Nham1793	COG4565	34	0.003
Response regulator of citrate/malate metabolism	T	Contig28	Nham1837	COG4565	51	1e-07
Response regulator of citrate/malate metabolism	T	Contig28	Nham1839	COG4565	64	2e-11
Response regulator of citrate/malate metabolism	T	Contig28	Nham1885	COG4565	66	3e-12
Response regulator of citrate/malate metabolism	T	Contig28	Nham1905	COG4565	40	6e-05
Response regulator of citrate/malate metabolism	T	Contig28	Nham1906	COG4565	53	2e-08
Response regulator of citrate/malate metabolism	T	Contig28	Nham2191	COG4565	48	2e-07
Response regulator of citrate/malate metabolism	T	Contig28	Nham2192	COG4565	69	5e-13
Response regulator of citrate/malate metabolism	T	Contig28	Nham2442	COG4565	55	9e-09
Response regulator of citrate/malate metabolism	T	Contig28	Nham2443	COG4565	62	1e-11
Response regulator of citrate/malate metabolism	T	Contig28	Nham2990	COG4565	58	7e-10
Response regulator of citrate/malate metabolism	T	Contig28	Nham3137	COG4565	67	1e-12
Response regulator of citrate/malate metabolism	T	Contig28	Nham3160	COG4565	59	1e-10
Response regulator of citrate/malate metabolism	T	Contig28	Nham3293	COG4565	67	9e-13
Response regulator of citrate/malate metabolism	T	Contig28	Nham3296	COG4565	74	7e-15
Response regulator of citrate/malate metabolism	T	Contig28	Nham3371	COG4565	69	3e-13
Response regulator of citrate/malate metabolism	T	Contig28	Nham3373	COG4565	61	2e-10
Response regulator of citrate/malate metabolism	T	Contig28	Nham3374	COG4565	67	5e-13
Response regulator of citrate/malate metabolism	T	Contig28	Nham3376	COG4565	42	2e-04
Response regulator of citrate/malate metabolism	T	Contig28	Nham3485	COG4565	39	7e-04
Response regulator of citrate/malate metabolism	T	Contig28	Nham3488	COG4565	57	3e-09
Response regulator of citrate/malate metabolism	T	Contig28	Nham3570	COG4565	44	9e-06
Response regulator of citrate/malate metabolism	T	Contig28	Nham3683	COG4565	64	1e-11
Response regulator of the LytR/AlgR family	T	Contig27	Nham4155	COG3279	35	0.002
Response regulator of the LytR/AlgR family	T	Contig28	Nham0094	COG3279	62	3e-11
Response regulator of the LytR/AlgR family	T	Contig28	Nham0129	COG3279	48	2e-06
Response regulator of the LytR/AlgR family	T	Contig28	Nham0231	COG3279	50	2e-07
Response regulator of the LytR/AlgR family	T	Contig28	Nham0235	COG3279	61	3e-10
Response regulator of the LytR/AlgR family	T	Contig28	Nham0273	COG3279	46	3e-06
Response regulator of the LytR/AlgR family	T	Contig28	Nham0349	COG3279	42	2e-04
Response regulator of the LytR/AlgR family	T	Contig28	Nham0443	COG3279	64	1e-11
Response regulator of the LytR/AlgR family	T	Contig28	Nham0640	COG3279	53	2e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham0646	COG3279	46	1e-06
Response regulator of the LytR/AlgR family	T	Contig28	Nham0665	COG3279	47	4e-07
Response regulator of the LytR/AlgR family	T	Contig28	Nham0872	COG3279	51	8e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham0873	COG3279	44	4e-06
Response regulator of the LytR/AlgR family	T	Contig28	Nham0998	COG3279	47	1e-06
Response regulator of the LytR/AlgR family	T	Contig28	Nham1143	COG3279	50	4e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham1224	COG3279	55	1e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham1398	COG3279	62	3e-10
Response regulator of the LytR/AlgR family	T	Contig28	Nham1433	COG3279	53	1e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham1442	COG3279	45	4e-06
Response regulator of the LytR/AlgR family	T	Contig28	Nham1662	COG3279	51	4e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham1793	COG3279	34	0.003
Response regulator of the LytR/AlgR family	T	Contig28	Nham1837	COG3279	56	5e-09
Response regulator of the LytR/AlgR family	T	Contig28	Nham1839	COG3279	56	6e-09
Response regulator of the LytR/AlgR family	T	Contig28	Nham1885	COG3279	54	1e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham1905	COG3279	51	2e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham1906	COG3279	66	1e-12
Response regulator of the LytR/AlgR family	T	Contig28	Nham2191	COG3279	39	1e-04
Response regulator of the LytR/AlgR family	T	Contig28	Nham2192	COG3279	51	1e-07
Response regulator of the LytR/AlgR family	T	Contig28	Nham2442	COG3279	61	2e-10
Response regulator of the LytR/AlgR family	T	Contig28	Nham2443	COG3279	47	3e-07
Response regulator of the LytR/AlgR family	T	Contig28	Nham2990	COG3279	43	2e-05
Response regulator of the LytR/AlgR family	T	Contig28	Nham3137	COG3279	52	5e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham3160	COG3279	41	2e-05
Response regulator of the LytR/AlgR family	T	Contig28	Nham3293	COG3279	55	5e-09
Response regulator of the LytR/AlgR family	T	Contig28	Nham3296	COG3279	50	2e-07
Response regulator of the LytR/AlgR family	T	Contig28	Nham3371	COG3279	51	6e-08
Response regulator of the LytR/AlgR family	T	Contig28	Nham3373	COG3279	58	1e-09
Response regulator of the LytR/AlgR family	T	Contig28	Nham3374	COG3279	59	1e-10
Response regulator of the LytR/AlgR family	T	Contig28	Nham3485	COG3279	57	3e-09
Response regulator of the LytR/AlgR family	T	Contig28	Nham3488	COG3279	51	2e-07
Response regulator of the LytR/AlgR family	T	Contig28	Nham3570	COG3279	40	1e-04
Response regulator of the LytR/AlgR family	T	Contig28	Nham3683	COG3279	47	1e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig27	Nham4155	COG0745	43	6e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0094	COG0745	185	3e-48
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0129	COG0745	86	8e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0231	COG0745	70	9e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0235	COG0745	77	7e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0273	COG0745	69	3e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0274	COG0745	51	6e-07
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0349	COG0745	60	6e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0443	COG0745	209	2e-55
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0640	COG0745	237	4e-64
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0646	COG0745	46	1e-06
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0665	COG0745	74	3e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0687	COG0745	38	0.002
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0872	COG0745	75	3e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0873	COG0745	72	1e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham0998	COG0745	197	5e-52
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1143	COG0745	64	3e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1224	COG0745	81	2e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1398	COG0745	77	4e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1433	COG0745	224	5e-60
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1442	COG0745	214	6e-57
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1662	COG0745	78	2e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1793	COG0745	41	3e-05
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1837	COG0745	85	1e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1839	COG0745	82	9e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1885	COG0745	206	1e-54
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1905	COG0745	70	7e-14
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham1906	COG0745	83	2e-17
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham2191	COG0745	63	6e-12
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham2192	COG0745	78	7e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham2442	COG0745	113	2e-26
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham2443	COG0745	73	4e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham2933	COG0745	43	5e-05
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham2990	COG0745	202	2e-53
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3088	COG0745	59	7e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3137	COG0745	187	5e-49
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3160	COG0745	74	3e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3293	COG0745	194	4e-51
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3296	COG0745	190	5e-50
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3371	COG0745	209	1e-55
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3373	COG0745	69	4e-13
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3374	COG0745	83	8e-18
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3376	COG0745	80	6e-16
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3485	COG0745	77	4e-15
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3488	COG0745	60	4e-10
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3683	COG0745	192	2e-50
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham3684	COG0745	39	0.001
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	T	Contig28	Nham4035	COG0745	39	7e-04
Response regulator with putative antiterminator output domain	T	Contig28	Nham0094	COG3707	44	6e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham0129	COG3707	54	4e-08
Response regulator with putative antiterminator output domain	T	Contig28	Nham0273	COG3707	39	2e-04
Response regulator with putative antiterminator output domain	T	Contig28	Nham0349	COG3707	37	0.006
Response regulator with putative antiterminator output domain	T	Contig28	Nham0443	COG3707	41	8e-05
Response regulator with putative antiterminator output domain	T	Contig28	Nham0640	COG3707	49	4e-07
Response regulator with putative antiterminator output domain	T	Contig28	Nham0665	COG3707	39	1e-04
Response regulator with putative antiterminator output domain	T	Contig28	Nham0872	COG3707	44	9e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham0873	COG3707	43	9e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham0998	COG3707	43	2e-05
Response regulator with putative antiterminator output domain	T	Contig28	Nham1224	COG3707	48	2e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham1433	COG3707	44	9e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham1662	COG3707	59	2e-10
Response regulator with putative antiterminator output domain	T	Contig28	Nham1793	COG3707	34	0.003
Response regulator with putative antiterminator output domain	T	Contig28	Nham1837	COG3707	43	5e-05
Response regulator with putative antiterminator output domain	T	Contig28	Nham1839	COG3707	49	4e-07
Response regulator with putative antiterminator output domain	T	Contig28	Nham1885	COG3707	43	2e-05
Response regulator with putative antiterminator output domain	T	Contig28	Nham1905	COG3707	43	6e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham1906	COG3707	38	4e-04
Response regulator with putative antiterminator output domain	T	Contig28	Nham2191	COG3707	33	0.008
Response regulator with putative antiterminator output domain	T	Contig28	Nham2192	COG3707	39	4e-04
Response regulator with putative antiterminator output domain	T	Contig28	Nham2442	COG3707	53	4e-08
Response regulator with putative antiterminator output domain	T	Contig28	Nham2443	COG3707	59	9e-11
Response regulator with putative antiterminator output domain	T	Contig28	Nham2990	COG3707	48	8e-07
Response regulator with putative antiterminator output domain	T	Contig28	Nham3137	COG3707	38	0.001
Response regulator with putative antiterminator output domain	T	Contig28	Nham3160	COG3707	42	1e-05
Response regulator with putative antiterminator output domain	T	Contig28	Nham3293	COG3707	38	7e-04
Response regulator with putative antiterminator output domain	T	Contig28	Nham3296	COG3707	36	0.002
Response regulator with putative antiterminator output domain	T	Contig28	Nham3371	COG3707	42	5e-05
Response regulator with putative antiterminator output domain	T	Contig28	Nham3373	COG3707	46	4e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham3374	COG3707	45	2e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham3376	COG3707	41	5e-04
Response regulator with putative antiterminator output domain	T	Contig28	Nham3485	COG3707	48	1e-06
Response regulator with putative antiterminator output domain	T	Contig28	Nham3683	COG3707	36	0.004
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	T	Contig28	Nham0050	COG0478	54	2e-08
RIO-like serine/threonine protein kinase fused to N-terminal HTH domain	T	Contig28	Nham1803	COG0478	39	4e-04
Serine kinase of the HPr protein regulates carbohydrate metabolism	T	Contig28	Nham0441	COG1493	83	1e-17
Serine kinase of the HPr protein regulates carbohydrate metabolism	T	Contig28	Nham2723	COG1493	35	0.008
Serine kinase of the HPr protein regulates carbohydrate metabolism	T	Contig28	Nham3012	COG1493	43	5e-05
Serine/threonine protein kinase	T	Contig28	Nham1803	COG0515	38	8e-04
SH3 domain protein	T	Contig28	Nham0044	COG3103	38	4e-04
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	T	Contig27	Nham4344	COG4650	45	4e-06
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	T	Contig28	Nham0687	COG4650	141	9e-35
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	T	Contig28	Nham1224	COG4650	142	4e-35
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	T	Contig28	Nham1837	COG4650	137	2e-33
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	T	Contig28	Nham1839	COG4650	122	6e-29
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain	T	Contig28	Nham1979	COG4650	37	0.004
Signal transduction histidine kinase	T	Contig25	Nham4605	COG3920	139	1e-33
Signal transduction histidine kinase	T	Contig25	Nham4618	COG3920	150	2e-37
Signal transduction histidine kinase	T	Contig27	Nham4209	COG3920	117	3e-27
Signal transduction histidine kinase	T	Contig28	Nham0053	COG3920	36	0.009
Signal transduction histidine kinase	T	Contig28	Nham0053	COG0642	141	3e-34
Signal transduction histidine kinase	T	Contig28	Nham0053	COG4585	41	3e-04
Signal transduction histidine kinase	T	Contig28	Nham0053	COG5002	107	4e-24
Signal transduction histidine kinase	T	Contig28	Nham0129	COG0642	168	1e-42
Signal transduction histidine kinase	T	Contig28	Nham0129	COG4585	42	1e-04
Signal transduction histidine kinase	T	Contig28	Nham0129	COG5002	106	6e-24
Signal transduction histidine kinase	T	Contig28	Nham0230	COG0642	97	2e-21
Signal transduction histidine kinase	T	Contig28	Nham0230	COG4585	41	3e-04
Signal transduction histidine kinase	T	Contig28	Nham0230	COG5002	48	2e-06
Signal transduction histidine kinase	T	Contig28	Nham0235	COG0642	128	2e-30
Signal transduction histidine kinase	T	Contig28	Nham0235	COG4585	41	4e-04
Signal transduction histidine kinase	T	Contig28	Nham0235	COG5002	57	5e-09
Signal transduction histidine kinase	T	Contig28	Nham0274	COG3920	43	1e-04
Signal transduction histidine kinase	T	Contig28	Nham0274	COG0642	137	5e-33
Signal transduction histidine kinase	T	Contig28	Nham0274	COG4585	45	3e-05
Signal transduction histidine kinase	T	Contig28	Nham0274	COG5002	86	1e-17
Signal transduction histidine kinase	T	Contig28	Nham0349	COG0642	127	3e-30
Signal transduction histidine kinase	T	Contig28	Nham0349	COG4585	47	6e-06
Signal transduction histidine kinase	T	Contig28	Nham0349	COG5002	69	1e-12
Signal transduction histidine kinase	T	Contig28	Nham0362	COG5002	38	2e-04
Signal transduction histidine kinase	T	Contig28	Nham0442	COG0642	146	4e-36
Signal transduction histidine kinase	T	Contig28	Nham0442	COG5002	125	8e-30
Signal transduction histidine kinase	T	Contig28	Nham0634	COG3920	40	4e-04
Signal transduction histidine kinase	T	Contig28	Nham0634	COG0642	154	8e-39
Signal transduction histidine kinase	T	Contig28	Nham0634	COG4585	37	0.002
Signal transduction histidine kinase	T	Contig28	Nham0634	COG5002	171	8e-44
Signal transduction histidine kinase	T	Contig28	Nham0884	COG0642	141	1e-34
Signal transduction histidine kinase	T	Contig28	Nham0884	COG4585	49	8e-07
Signal transduction histidine kinase	T	Contig28	Nham0884	COG5002	88	2e-18
Signal transduction histidine kinase	T	Contig28	Nham0997	COG0642	158	5e-40
Signal transduction histidine kinase	T	Contig28	Nham0997	COG4585