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DNA Replication, Recombination and Repair

COG Name Group Contig Gene COG ID Score Evalue
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig28 Nham0162 COG0122 37 0.002
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig28 Nham3227 COG0122 37 0.002
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase L Contig28 Nham3487 COG0122 149 2e-37
3-methyladenine DNA glycosylase L Contig28 Nham1830 COG2094 208 2e-55
3-methyladenine DNA glycosylase L Contig28 Nham4020 COG2818 264 4e-72
5'-3' exonuclease (including N-terminal domain of PolI) L Contig28 Nham0453 COG0258 268 1e-72
Adenine-specific DNA methylase containing a Zn-ribbon L Contig28 Nham1353 COG1743 140 5e-34
Adenine-specific DNA methylase L Contig25 Nham4656 COG0827 159 2e-39
Adenine-specific DNA methylase L Contig26 Nham4476 COG0827 133 8e-32
Adenine specific DNA methylase Mod L Contig28 Nham0582 COG2189 159 6e-40
Adenine specific DNA methylase Mod L Contig28 Nham0803 COG2189 36 0.006
Adenine specific DNA methylase Mod L Contig28 Nham3225 COG2189 45 1e-05
A/G-specific DNA glycosylase L Contig28 Nham0162 COG1194 82 3e-17
A/G-specific DNA glycosylase L Contig28 Nham0482 COG1194 38 4e-04
A/G-specific DNA glycosylase L Contig28 Nham3227 COG1194 336 1e-93
Antirestriction protein L Contig26 Nham4483 COG4227 398 1.0e-112
Antirestriction protein L Contig27 Nham4265 COG4227 155 1e-39
Antirestriction protein L Contig28 Nham0306 COG4227 251 5e-68
Antirestriction protein L Contig28 Nham0574 COG4227 350 6e-98
Antirestriction protein L Contig28 Nham4029 COG4227 344 4e-96
ATPase involved in DNA repair L Contig26 Nham4459 COG0497 36 0.010
ATPase involved in DNA repair L Contig26 Nham4459 COG0419 43 5e-05
ATPase involved in DNA repair L Contig27 Nham4198 COG0419 46 6e-06
ATPase involved in DNA repair L Contig28 Nham0003 COG0419 44 2e-05
ATPase involved in DNA repair L Contig28 Nham0176 COG0419 38 9e-04
ATPase involved in DNA repair L Contig28 Nham0248 COG0419 42 3e-04
ATPase involved in DNA repair L Contig28 Nham0346 COG0419 50 1e-07
ATPase involved in DNA repair L Contig28 Nham0382 COG0419 41 2e-04
ATPase involved in DNA repair L Contig28 Nham0409 COG0419 44 1e-05
ATPase involved in DNA repair L Contig28 Nham0417 COG0419 50 5e-07
ATPase involved in DNA repair L Contig28 Nham0426 COG0419 47 2e-06
ATPase involved in DNA repair L Contig28 Nham0433 COG0419 46 2e-06
ATPase involved in DNA repair L Contig28 Nham0524 COG0497 41 2e-04
ATPase involved in DNA repair L Contig28 Nham0524 COG0419 45 9e-06
ATPase involved in DNA repair L Contig28 Nham0549 COG0419 52 2e-08
ATPase involved in DNA repair L Contig28 Nham0638 COG0419 36 0.003
ATPase involved in DNA repair L Contig28 Nham0667 COG0419 45 5e-06
ATPase involved in DNA repair L Contig28 Nham0718 COG0419 37 0.001
ATPase involved in DNA repair L Contig28 Nham0905 COG0419 63 2e-11
ATPase involved in DNA repair L Contig28 Nham0955 COG0419 45 7e-06
ATPase involved in DNA repair L Contig28 Nham0964 COG0419 59 2e-10
ATPase involved in DNA repair L Contig28 Nham1051 COG0419 49 2e-06
ATPase involved in DNA repair L Contig28 Nham1207 COG0419 44 2e-05
ATPase involved in DNA repair L Contig28 Nham1289 COG0497 521 1.0e-149
ATPase involved in DNA repair L Contig28 Nham1289 COG0419 45 1e-05
ATPase involved in DNA repair L Contig28 Nham1292 COG0419 43 8e-05
ATPase involved in DNA repair L Contig28 Nham1316 COG0419 47 9e-07
ATPase involved in DNA repair L Contig28 Nham1492 COG0419 38 0.002
ATPase involved in DNA repair L Contig28 Nham1673 COG0419 39 3e-04
ATPase involved in DNA repair L Contig28 Nham1922 COG0419 43 3e-05
ATPase involved in DNA repair L Contig28 Nham1994 COG0419 38 0.002
ATPase involved in DNA repair L Contig28 Nham2068 COG0419 49 3e-07
ATPase involved in DNA repair L Contig28 Nham2081 COG0419 51 4e-07
ATPase involved in DNA repair L Contig28 Nham2195 COG0419 47 1e-06
ATPase involved in DNA repair L Contig28 Nham2327 COG0419 37 0.001
ATPase involved in DNA repair L Contig28 Nham2336 COG0419 51 3e-07
ATPase involved in DNA repair L Contig28 Nham2538 COG0419 39 0.001
ATPase involved in DNA repair L Contig28 Nham2552 COG0419 50 3e-07
ATPase involved in DNA repair L Contig28 Nham2613 COG0419 42 4e-05
ATPase involved in DNA repair L Contig28 Nham2718 COG0419 47 2e-06
ATPase involved in DNA repair L Contig28 Nham2740 COG0419 48 1e-06
ATPase involved in DNA repair L Contig28 Nham2809 COG0419 48 3e-06
ATPase involved in DNA repair L Contig28 Nham2830 COG0419 50 9e-07
ATPase involved in DNA repair L Contig28 Nham2911 COG0419 50 4e-07
ATPase involved in DNA repair L Contig28 Nham2948 COG0419 49 1e-06
ATPase involved in DNA repair L Contig28 Nham2970 COG0419 44 2e-05
ATPase involved in DNA repair L Contig28 Nham3026 COG0419 51 3e-07
ATPase involved in DNA repair L Contig28 Nham3048 COG0419 49 2e-06
ATPase involved in DNA repair L Contig28 Nham3230 COG0497 48 4e-06
ATPase involved in DNA repair L Contig28 Nham3230 COG0419 82 2e-16
ATPase involved in DNA repair L Contig28 Nham3381 COG0419 47 3e-06
ATPase involved in DNA repair L Contig28 Nham3428 COG0419 44 1e-05
ATPase involved in DNA repair L Contig28 Nham3544 COG0419 44 4e-05
ATPase involved in DNA repair L Contig28 Nham3557 COG0419 55 7e-09
ATPase involved in DNA repair L Contig28 Nham3729 COG0419 54 8e-09
ATPase involved in DNA repair L Contig28 Nham3736 COG0419 45 1e-05
ATPase involved in DNA repair L Contig28 Nham3828 COG0419 42 2e-04
ATPase involved in DNA repair L Contig28 Nham3844 COG0419 37 0.004
ATPase involved in DNA repair L Contig28 Nham3991 COG0419 47 4e-06
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig27 Nham4051 COG2256 42 7e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham0120 COG2256 38 0.002
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham0462 COG2256 92 1e-19
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham0681 COG2256 41 5e-04
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham1361 COG2256 38 0.003
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham1573 COG2256 603 1.0e-173
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham2009 COG2256 42 7e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham2227 COG2256 44 3e-05
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham2228 COG2256 48 2e-06
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham2416 COG2256 40 6e-04
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham3506 COG2256 59 1e-09
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham3521 COG2256 82 6e-17
ATPase related to the helicase subunit of the Holliday junction resolvase L Contig28 Nham3749 COG2256 42 7e-05
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member L Contig25 Nham4540 COG0507 295 1e-80
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member L Contig28 Nham0686 COG0507 107 2e-24
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member L Contig28 Nham1995 COG0507 36 0.005
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member L Contig28 Nham2739 COG0507 42 2e-04
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member L Contig28 Nham2841 COG0507 421 1.0e-118
ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member L Contig28 Nham3707 COG0507 115 2e-26
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig28 Nham0058 COG1074 540 1.0e-154
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig28 Nham1995 COG1074 38 0.001
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig28 Nham1997 COG1074 340 3e-94
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig28 Nham2739 COG1074 167 4e-42
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig28 Nham3768 COG1074 150 2e-37
ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) L Contig28 Nham3829 COG1074 40 5e-04
ATP-dependent nuclease subunit B L Contig28 Nham0057 COG3857 57 6e-09
Bacterial nucleoid DNA-binding protein L Contig28 Nham0066 COG0776 112 7e-27
Bacterial nucleoid DNA-binding protein L Contig28 Nham1452 COG0776 57 2e-10
Bacterial nucleoid DNA-binding protein L Contig28 Nham1587 COG0776 100 3e-23
Bacterial nucleoid DNA-binding protein L Contig28 Nham2223 COG0776 81 1e-17

BASAL REPLICATION MACHINERY

COG Name Group Contig Gene COG ID Score Evalue
ATPase involved in DNA replication L Contig28 Nham0462 COG0470 38 0.003
ATPase involved in DNA replication L Contig28 Nham2009 COG0470 45 8e-06
ATPase involved in DNA replication initiation L Contig28 Nham0001 COG0593 379 1.0e-106
ATPase involved in DNA replication initiation L Contig28 Nham0319 COG0593 44 2e-05
ATPase involved in DNA replication initiation L Contig28 Nham0546 COG0593 36 0.007
ATPase involved in DNA replication initiation L Contig28 Nham0788 COG0593 43 2e-05
ATPase involved in DNA replication initiation L Contig28 Nham0900 COG0593 43 2e-05
ATPase involved in DNA replication initiation L Contig28 Nham1203 COG0593 43 3e-05
ATPase involved in DNA replication initiation L Contig28 Nham2116 COG0593 139 2e-34
ATPase involved in DNA replication initiation L Contig28 Nham3506 COG0593 39 0.001
ATPase involved in DNA replication initiation L Contig28 Nham3715 COG0593 43 2e-05
ATPase involved in DNA replication initiation L Contig28 Nham3913 COG0593 44 2e-05
ATPase involved in DNA replication initiation L Contig28 Nham3924 COG0593 43 2e-05
ATP-dependent DNA ligase L Contig28 Nham0448 COG1793 268 9e-73
ATP-dependent DNA ligase L Contig28 Nham0553 COG1793 266 2e-72
ATP-dependent DNA ligase L Contig28 Nham3852 COG1793 207 6e-55
ATP-dependent DNA ligase L Contig28 Nham3905 COG1793 187 7e-49
ATP-dependent DNA ligase L Contig28 Nham3907 COG1793 259 5e-70
DNA polymerase I - 3'-5' exonuclease and polymerase domains L Contig28 Nham0179 COG0749 66 2e-12
DNA polymerase I - 3'-5' exonuclease and polymerase domains L Contig28 Nham0453 COG0749 701 0.0
DNA polymerase I - 3'-5' exonuclease and polymerase domains L Contig28 Nham2112 COG0749 52 7e-08
DNA polymerase II small subunit/DNA polymerase delta subunit B L Contig28 Nham1311 COG1311 40 1e-04
DNA primase L Contig28 Nham0301 COG0358 46 3e-06
DNA primase L Contig28 Nham2867 COG0358 376 1.0e-105
DNA replication protein L Contig26 Nham4394 COG1484 72 9e-15
DNA replication protein L Contig26 Nham4502 COG1484 38 0.003
DNA replication protein L Contig27 Nham4271 COG1484 35 0.004
DNA replication protein L Contig28 Nham0001 COG1484 42 1e-04
DNA replication protein L Contig28 Nham0319 COG1484 159 2e-40
DNA replication protein L Contig28 Nham0681 COG1484 37 0.005
DNA replication protein L Contig28 Nham0788 COG1484 159 2e-40
DNA replication protein L Contig28 Nham0900 COG1484 159 2e-40
DNA replication protein L Contig28 Nham1203 COG1484 159 2e-40
DNA replication protein L Contig28 Nham1612 COG1484 39 3e-04
DNA replication protein L Contig28 Nham2416 COG1484 40 5e-04
DNA replication protein L Contig28 Nham2786 COG1484 173 1e-44
DNA replication protein L Contig28 Nham3065 COG1484 52 1e-08
DNA replication protein L Contig28 Nham3521 COG1484 36 0.005
DNA replication protein L Contig28 Nham3715 COG1484 159 2e-40
DNA replication protein L Contig28 Nham3913 COG1484 159 2e-40
DNA replication protein L Contig28 Nham3924 COG1484 154 1e-38
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig28 Nham0330 COG0272 56 6e-09
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig28 Nham1290 COG0272 882 0.0
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig28 Nham2841 COG0272 43 8e-05
NAD-dependent DNA ligase (contains BRCT domain type II) L Contig28 Nham3146 COG0272 43 5e-05
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig28 Nham0535 COG1198 745 0.0
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig28 Nham2053 COG1198 75 3e-14
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig28 Nham2055 COG1198 75 3e-14
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig28 Nham2923 COG1198 49 2e-06
Primosomal protein N' (replication factor Y) - superfamily II helicase L Contig28 Nham3439 COG1198 39 0.001
Replicative DNA helicase L Contig28 Nham2289 COG0305 472 1.0e-134
Replicative DNA helicase L Contig28 Nham2291 COG0305 44 2e-05
Replicative DNA helicase L Contig28 Nham3347 COG0305 49 9e-07
Ribonuclease HI L Contig28 Nham2855 COG0328 109 7e-26
Ribonuclease HI L Contig28 Nham3743 COG0328 190 5e-50
Ribonuclease HII L Contig28 Nham3221 COG0164 205 3e-54
Ribonuclease HIII L Contig28 Nham3221 COG1039 66 2e-12
Single-stranded DNA-binding protein L Contig25 Nham4669 COG0629 87 5e-19
Single-stranded DNA-binding protein L Contig26 Nham4451 COG0629 45 8e-07
Single-stranded DNA-binding protein L Contig26 Nham4520 COG0629 49 8e-08
Single-stranded DNA-binding protein L Contig27 Nham4278 COG0629 51 7e-08
Single-stranded DNA-binding protein L Contig28 Nham2079 COG0629 137 3e-34
Topoisomerase IA L Contig28 Nham2437 COG0550 627 1.0e-180
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit L Contig28 Nham1764 COG0188 969 0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit L Contig28 Nham2247 COG0188 750 0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit L Contig28 Nham0004 COG0187 878 0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit L Contig28 Nham2317 COG0187 820 0.0
Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit L Contig28 Nham3295 COG0187 36 0.007
COG Name Group Contig Gene COG ID Score Evalue
Cdc6-related protein AAA superfamily ATPase L Contig28 Nham0687 COG1474 35 0.008
Cdc6-related protein AAA superfamily ATPase L Contig28 Nham3506 COG1474 41 2e-04
DNA-damage-inducible protein J L Contig25 Nham4666 COG3077 62 7e-12
DNA G:T-mismatch repair endonuclease L Contig28 Nham2517 COG3727 150 5e-38
DNA gyrase inhibitor L Contig28 Nham3576 COG3449 36 0.004
DNA methylase L Contig25 Nham4656 COG4646 775 0.0
DNA methylase L Contig26 Nham4476 COG4646 724 0.0
DNA mismatch repair enzyme (predicted ATPase) L Contig28 Nham0004 COG0323 40 9e-04
DNA mismatch repair enzyme (predicted ATPase) L Contig28 Nham2317 COG0323 38 0.003
DNA mismatch repair enzyme (predicted ATPase) L Contig28 Nham3169 COG0323 603 1.0e-174
DNA mismatch repair enzyme (predicted ATPase) L Contig28 Nham3295 COG0323 36 0.004
DNA mismatch repair enzyme (predicted ATPase) L Contig28 Nham3632 COG0323 37 0.003
DNA mismatch repair enzyme (predicted ATPase) L Contig28 Nham3783 COG0323 49 1e-06
DNA modification methylase L Contig28 Nham0569 COG0863 114 5e-27
DNA modification methylase L Contig28 Nham0582 COG0863 42 1e-04
DNA modification methylase L Contig28 Nham0803 COG0863 98 1e-21
DNA modification methylase L Contig28 Nham3225 COG0863 226 2e-60
DNA or RNA helicase of superfamily II L Contig26 Nham4464 COG1061 43 2e-04
DNA or RNA helicase of superfamily II L Contig26 Nham4500 COG1061 63 7e-11
DNA or RNA helicase of superfamily II L Contig27 Nham4213 COG1061 40 2e-04
DNA or RNA helicase of superfamily II L Contig28 Nham0240 COG1061 59 1e-09
DNA or RNA helicase of superfamily II L Contig28 Nham0400 COG1061 69 6e-13
DNA or RNA helicase of superfamily II L Contig28 Nham0455 COG1061 47 6e-06
DNA or RNA helicase of superfamily II L Contig28 Nham0504 COG1061 44 9e-05
DNA or RNA helicase of superfamily II L Contig28 Nham0535 COG1061 43 7e-05
DNA or RNA helicase of superfamily II L Contig28 Nham0580 COG1061 40 0.001
DNA or RNA helicase of superfamily II L Contig28 Nham1150 COG1061 47 5e-06
DNA or RNA helicase of superfamily II L Contig28 Nham1352 COG1061 53 1e-07
DNA or RNA helicase of superfamily II L Contig28 Nham1985 COG1061 96 2e-20
DNA or RNA helicase of superfamily II L Contig28 Nham2002 COG1061 73 6e-14
DNA or RNA helicase of superfamily II L Contig28 Nham2053 COG1061 68 3e-12
DNA or RNA helicase of superfamily II L Contig28 Nham2055 COG1061 64 3e-11
DNA or RNA helicase of superfamily II L Contig28 Nham2321 COG1061 89 8e-19
DNA or RNA helicase of superfamily II L Contig28 Nham2839 COG1061 57 7e-09
DNA or RNA helicase of superfamily II L Contig28 Nham2923 COG1061 55 3e-08
DNA or RNA helicase of superfamily II L Contig28 Nham3439 COG1061 55 1e-08
DNA or RNA helicase of superfamily II L Contig28 Nham3708 COG1061 115 4e-27
DNA or RNA helicase of superfamily II L Contig28 Nham3709 COG1061 57 9e-09

DNA POLYMERASE III SUBUNITS

COG Name Group Contig Gene COG ID Score Evalue
DNA polymerase III alpha subunit L Contig28 Nham1693 COG0587 1223 0.0
DNA polymerase III alpha subunit L Contig28 Nham2666 COG0587 932 0.0
DNA polymerase III alpha subunit L Contig28 Nham3765 COG0587 1110 0.0
DNA polymerase III alpha subunit L Contig28 Nham3908 COG0587 39 8e-05
DNA polymerase III alpha subunit (gram-positive type) L Contig28 Nham0115 COG2176 106 2e-24
DNA polymerase III alpha subunit (gram-positive type) L Contig28 Nham0330 COG2176 90 3e-19
DNA polymerase III alpha subunit (gram-positive type) L Contig28 Nham1693 COG2176 156 6e-39
DNA polymerase III alpha subunit (gram-positive type) L Contig28 Nham2666 COG2176 82 2e-16
DNA polymerase III alpha subunit (gram-positive type) L Contig28 Nham3765 COG2176 81 3e-16
DNA polymerase III chi subunit L Contig28 Nham2338 COG2927 125 1e-30
DNA polymerase III delta subunit L Contig28 Nham0100 COG1466 156 3e-39
DNA polymerase III delta subunit L Contig28 Nham0462 COG1466 45 2e-05
DNA polymerase III delta subunit L Contig28 Nham2116 COG1466 35 0.003
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L Contig28 Nham0115 COG0847 163 9e-42
DNA polymerase III epsilon subunit and related 3'-5' exonuclease L Contig28 Nham0330 COG0847 104 1e-23
DNA polymerase III gamma/tau subunits L Contig28 Nham0462 COG2812 434 1.0e-122
DNA polymerase III gamma/tau subunits L Contig28 Nham1573 COG2812 72 7e-14
DNA polymerase III gamma/tau subunits L Contig28 Nham2009 COG2812 99 6e-22
DNA polymerase III gamma/tau subunits L Contig28 Nham2228 COG2812 37 0.003
DNA polymerase III gamma/tau subunits L Contig28 Nham2416 COG2812 40 5e-04
DNA polymerase III gamma/tau subunits L Contig28 Nham3521 COG2812 43 3e-05
DNA polymerase sliding clamp subunit (PCNA homolog) L Contig28 Nham0002 COG0592 331 3e-92
COG Name Group Contig Gene COG ID Score Evalue
DNA repair exonuclease L Contig28 Nham1311 COG0420 44 1e-05
DNA repair exonuclease L Contig28 Nham2672 COG0420 42 7e-05
DNA repair exonuclease L Contig28 Nham2831 COG0420 127 1e-30
DNA repair exonuclease L Contig28 Nham3261 COG0420 43 3e-05
DNA repair exonuclease L Contig28 Nham3779 COG0420 49 3e-07
DNA repair photolyase L Contig28 Nham0598 COG1533 39 3e-04
DNA repair photolyase L Contig28 Nham0890 COG1533 36 0.003
DNA repair photolyase L Contig28 Nham3222 COG1533 302 3e-83
DNA repair protein L Contig28 Nham0430 COG2003 247 6e-67
DNA topoisomerase VI subunit B L Contig28 Nham0053 COG1389 37 0.005
DNA topoisomerase VI subunit B L Contig28 Nham0997 COG1389 36 0.006
DNA topoisomerase VI subunit B L Contig28 Nham2317 COG1389 36 0.010
DNA topoisomerase VI subunit B L Contig28 Nham2623 COG1389 37 0.004
DNA topoisomerase VI subunit B L Contig28 Nham3632 COG1389 41 2e-04
DNA uptake protein and related DNA-binding protein L Contig28 Nham0405 COG1555 39 8e-05
DNA uptake protein and related DNA-binding protein L Contig28 Nham1037 COG1555 55 3e-08
ERCC4-like helicase L Contig27 Nham4213 COG1111 57 2e-09
ERCC4-like helicase L Contig28 Nham0240 COG1111 43 1e-04
ERCC4-like helicase L Contig28 Nham0400 COG1111 66 8e-12
ERCC4-like helicase L Contig28 Nham0455 COG1111 38 0.003
ERCC4-like helicase L Contig28 Nham0580 COG1111 58 3e-09
ERCC4-like helicase L Contig28 Nham1352 COG1111 41 5e-04
ERCC4-like helicase L Contig28 Nham2002 COG1111 44 5e-05
ERCC4-like helicase L Contig28 Nham2053 COG1111 44 5e-05
ERCC4-like helicase L Contig28 Nham2055 COG1111 45 2e-05
ERCC4-like helicase L Contig28 Nham2321 COG1111 69 9e-13
ERCC4-like helicase L Contig28 Nham2839 COG1111 41 5e-04
ERCC4-like helicase L Contig28 Nham2923 COG1111 56 2e-08
ERCC4-like helicase L Contig28 Nham3439 COG1111 47 4e-06
ERCC4-like helicase L Contig28 Nham3708 COG1111 44 1e-05
ERCC4-type nuclease L Contig28 Nham3146 COG1948 56 9e-09
Excinuclease ATPase subunit L Contig26 Nham4523 COG0178 44 4e-05
Excinuclease ATPase subunit L Contig27 Nham4198 COG0178 45 1e-05
Excinuclease ATPase subunit L Contig28 Nham0176 COG0178 50 2e-07
Excinuclease ATPase subunit L Contig28 Nham0346 COG0178 35 0.006
Excinuclease ATPase subunit L Contig28 Nham0355 COG0178 60 1e-10
Excinuclease ATPase subunit L Contig28 Nham0356 COG0178 61 9e-11
Excinuclease ATPase subunit L Contig28 Nham0382 COG0178 61 3e-10
Excinuclease ATPase subunit L Contig28 Nham0409 COG0178 37 0.001
Excinuclease ATPase subunit L Contig28 Nham0417 COG0178 57 3e-09
Excinuclease ATPase subunit L Contig28 Nham0426 COG0178 38 9e-04
Excinuclease ATPase subunit L Contig28 Nham0433 COG0178 51 8e-08
Excinuclease ATPase subunit L Contig28 Nham0441 COG0178 36 0.002
Excinuclease ATPase subunit L Contig28 Nham0549 COG0178 45 3e-06
Excinuclease ATPase subunit L Contig28 Nham0638 COG0178 40 2e-04
Excinuclease ATPase subunit L Contig28 Nham0667 COG0178 38 5e-04
Excinuclease ATPase subunit L Contig28 Nham0718 COG0178 46 5e-06
Excinuclease ATPase subunit L Contig28 Nham0905 COG0178 41 1e-04
Excinuclease ATPase subunit L Contig28 Nham0955 COG0178 49 5e-07
Excinuclease ATPase subunit L Contig28 Nham0964 COG0178 51 6e-08
Excinuclease ATPase subunit L Contig28 Nham1051 COG0178 40 6e-04
Excinuclease ATPase subunit L Contig28 Nham1207 COG0178 52 4e-08
Excinuclease ATPase subunit L Contig28 Nham1292 COG0178 59 7e-10
Excinuclease ATPase subunit L Contig28 Nham1316 COG0178 67 1e-12
Excinuclease ATPase subunit L Contig28 Nham1492 COG0178 52 2e-07
Excinuclease ATPase subunit L Contig28 Nham1534 COG0178 40 4e-04
Excinuclease ATPase subunit L Contig28 Nham1672 COG0178 42 3e-05
Excinuclease ATPase subunit L Contig28 Nham1673 COG0178 56 3e-09
Excinuclease ATPase subunit L Contig28 Nham1922 COG0178 60 2e-10
Excinuclease ATPase subunit L Contig28 Nham2068 COG0178 51 6e-08
Excinuclease ATPase subunit L Contig28 Nham2081 COG0178 1557 0.0
Excinuclease ATPase subunit L Contig28 Nham2195 COG0178 38 6e-04
Excinuclease ATPase subunit L Contig28 Nham2336 COG0178 39 0.001
Excinuclease ATPase subunit L Contig28 Nham2538 COG0178 57 3e-09
Excinuclease ATPase subunit L Contig28 Nham2552 COG0178 48 2e-06
Excinuclease ATPase subunit L Contig28 Nham2613 COG0178 52 4e-08
Excinuclease ATPase subunit L Contig28 Nham2614 COG0178 47 2e-06
Excinuclease ATPase subunit L Contig28 Nham2718 COG0178 45 6e-06
Excinuclease ATPase subunit L Contig28 Nham2740 COG0178 38 9e-04
Excinuclease ATPase subunit L Contig28 Nham2808 COG0178 47 1e-06
Excinuclease ATPase subunit L Contig28 Nham2809 COG0178 53 6e-08
Excinuclease ATPase subunit L Contig28 Nham2911 COG0178 43 6e-05
Excinuclease ATPase subunit L Contig28 Nham2948 COG0178 45 2e-05
Excinuclease ATPase subunit L Contig28 Nham2970 COG0178 37 0.003
Excinuclease ATPase subunit L Contig28 Nham3026 COG0178 51 2e-07
Excinuclease ATPase subunit L Contig28 Nham3048 COG0178 47 5e-06
Excinuclease ATPase subunit L Contig28 Nham3428 COG0178 42 3e-05
Excinuclease ATPase subunit L Contig28 Nham3544 COG0178 50 5e-07
Excinuclease ATPase subunit L Contig28 Nham3557 COG0178 51 1e-07
Excinuclease ATPase subunit L Contig28 Nham3648 COG0178 51 1e-07
Excinuclease ATPase subunit L Contig28 Nham3649 COG0178 58 5e-10
Excinuclease ATPase subunit L Contig28 Nham3729 COG0178 48 6e-07
Excinuclease ATPase subunit L Contig28 Nham3736 COG0178 50 5e-07
Excinuclease ATPase subunit L Contig28 Nham3991 COG0178 45 2e-05
Exonuclease III L Contig28 Nham0092 COG0708 248 5e-67
Exonuclease III L Contig28 Nham1755 COG0708 314 5e-87
Exonuclease VII large subunit L Contig28 Nham3174 COG1570 432 1.0e-122
Exonuclease VII small subunit L Contig28 Nham0779 COG1722 56 6e-10
Factor for inversion stimulation Fis transcriptional activator L Contig28 Nham0687 COG2901 44 3e-05
Factor for inversion stimulation Fis transcriptional activator L Contig28 Nham1837 COG2901 71 2e-13
Factor for inversion stimulation Fis transcriptional activator L Contig28 Nham2901 COG2901 38 2e-04
FOG: Transposase L Contig28 Nham0289 COG5659 153 3e-38
FOG: Transposase L Contig28 Nham3076 COG5659 289 2e-79
FOG: Transposase L Contig28 Nham3929 COG5659 161 1e-40
Formamidopyrimidine-DNA glycosylase L Contig28 Nham0048 COG0266 317 4e-88
Formamidopyrimidine-DNA glycosylase L Contig28 Nham1004 COG0266 308 3e-85
Helicase subunit of the DNA excision repair complex L Contig28 Nham0240 COG0556 37 0.005
Helicase subunit of the DNA excision repair complex L Contig28 Nham0400 COG0556 51 3e-07
Helicase subunit of the DNA excision repair complex L Contig28 Nham0535 COG0556 37 0.004
Helicase subunit of the DNA excision repair complex L Contig28 Nham2053 COG0556 67 9e-12
Helicase subunit of the DNA excision repair complex L Contig28 Nham2321 COG0556 46 7e-06
Helicase subunit of the DNA excision repair complex L Contig28 Nham2923 COG0556 1101 0.0
Helicase subunit of the DNA excision repair complex L Contig28 Nham3146 COG0556 36 0.008
Holliday junction resolvase L Contig28 Nham0308 COG4570 51 3e-08
Holliday junction resolvasome DNA-binding subunit L Contig28 Nham3146 COG0632 38 0.002
Holliday junction resolvasome DNA-binding subunit L Contig28 Nham3522 COG0632 204 4e-54
Holliday junction resolvasome endonuclease subunit L Contig28 Nham3523 COG0817 197 4e-52
Holliday junction resolvasome helicase subunit L Contig27 Nham4051 COG2255 38 0.001
Holliday junction resolvasome helicase subunit L Contig28 Nham0462 COG2255 39 0.001
Holliday junction resolvasome helicase subunit L Contig28 Nham0638 COG2255 35 0.006
Holliday junction resolvasome helicase subunit L Contig28 Nham1573 COG2255 65 1e-11
Holliday junction resolvasome helicase subunit L Contig28 Nham2227 COG2255 37 0.006
Holliday junction resolvasome helicase subunit L Contig28 Nham2228 COG2255 46 4e-06
Holliday junction resolvasome helicase subunit L Contig28 Nham2416 COG2255 42 2e-04
Holliday junction resolvasome helicase subunit L Contig28 Nham3251 COG2255 36 0.006
Holliday junction resolvasome helicase subunit L Contig28 Nham3506 COG2255 46 7e-06
Holliday junction resolvasome helicase subunit L Contig28 Nham3521 COG2255 502 1.0e-143
Holliday junction resolvasome helicase subunit L Contig28 Nham3749 COG2255 38 0.001
HrpA-like helicase L Contig28 Nham0400 COG1643 36 0.007
HrpA-like helicase L Contig28 Nham0455 COG1643 744 0.0
Inactivated superfamily I helicase L Contig28 Nham0057 COG3893 363 1.0e-101
Integrase L Contig28 Nham0294 COG0582 53 3e-08
Integrase L Contig28 Nham0488 COG0582 47 2e-06
Integrase L Contig28 Nham0536 COG0582 58 7e-10
Integrase L Contig28 Nham0858 COG0582 57 1e-09
Integrase L Contig28 Nham1727 COG0582 36 0.003
Integrase L Contig28 Nham2014 COG0582 40 3e-04
Integrase L Contig28 Nham2157 COG0582 43 5e-05
Methylated DNA-protein cysteine methyltransferase L Contig28 Nham0160 COG0350 154 7e-39
Methylated DNA-protein cysteine methyltransferase L Contig28 Nham0663 COG0350 117 4e-28
Mg-dependent DNase L Contig28 Nham0991 COG0084 87 2e-18
Mg-dependent DNase L Contig28 Nham2007 COG0084 292 2e-80
Micrococcal nuclease (thermonuclease) homologs L Contig25 Nham4671 COG1525 73 1e-14
Micrococcal nuclease (thermonuclease) homologs L Contig26 Nham4452 COG1525 67 1e-12
Micrococcal nuclease (thermonuclease) homologs L Contig28 Nham1591 COG1525 93 1e-20
Micrococcal nuclease (thermonuclease) homologs L Contig28 Nham1969 COG1525 96 2e-21
Micrococcal nuclease (thermonuclease) homologs L Contig28 Nham3090 COG1525 62 3e-11
Micrococcal nuclease (thermonuclease) homologs L Contig28 Nham3956 COG1525 101 4e-23
Mismatch repair ATPase (MutS family) L Contig28 Nham0119 COG1193 37 0.001
Mismatch repair ATPase (MutS family) L Contig28 Nham0614 COG1193 111 3e-25
Mismatch repair ATPase (MutS family) L Contig28 Nham0614 COG0249 877 0.0
Mismatch repair ATPase (MutS family) L Contig28 Nham3354 COG0249 34 0.002
N6-adenine-specific methylase L Contig28 Nham0197 COG0742 40 3e-04
N6-adenine-specific methylase L Contig28 Nham0469 COG0742 44 1e-05
N6-adenine-specific methylase L Contig28 Nham0776 COG0742 36 0.007
N6-adenine-specific methylase L Contig28 Nham2345 COG0742 35 0.007
N6-adenine-specific methylase L Contig28 Nham2746 COG0742 39 3e-04
N6-adenine-specific methylase L Contig28 Nham3142 COG0742 43 3e-05
N6-adenine-specific methylase L Contig28 Nham3170 COG0742 177 4e-46
N6-adenine-specific methylase L Contig28 Nham3214 COG0742 34 0.009
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig28 Nham0482 COG2816 37 6e-04
NTP pyrophosphohydrolase containing a Zn-finger probably nucleic-acid-binding L Contig28 Nham4015 COG2816 56 8e-10
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig28 Nham0482 COG0494 53 1e-08
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig28 Nham0527 COG0494 47 6e-07
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig28 Nham1987 COG0494 43 1e-05
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig28 Nham3249 COG0494 50 2e-07
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig28 Nham3259 COG0494 35 0.002
NTP pyrophosphohydrolase including oxidative damage repair protein L Contig28 Nham4015 COG0494 42 2e-05
Nuclease subunit of the excinuclease complex L Contig28 Nham2923 COG0322 41 4e-04
Nuclease subunit of the excinuclease complex L Contig28 Nham3146 COG0322 641 0.0
Nucleotidyltransferase/DNA polymerase involved in DNA repair L Contig28 Nham2445 COG0389 296 2e-81
Nucleotidyltransferase/DNA polymerase involved in DNA repair L Contig28 Nham2667 COG0389 77 4e-15
Nucleotidyltransferase/DNA polymerase involved in DNA repair L Contig28 Nham3766 COG0389 112 6e-26
Nucleotidyltransferase/DNA polymerase involved in DNA repair L Contig28 Nham4004 COG0389 135 2e-33
Phage DNA packaging protein Nu1 subunit of terminase L Contig28 Nham2393 COG4220 97 6e-22
Phage DNA packaging protein Nu1 subunit of terminase L Contig28 Nham3338 COG4220 92 2e-20
Phage terminase small subunit L Contig28 Nham0334 COG3747 78 3e-16
Phage terminase small subunit L Contig28 Nham1724 COG3747 70 5e-14
Phage terminase small subunit L Contig28 Nham2021 COG3747 77 4e-16
Phage terminase small subunit L Contig28 Nham2481 COG3747 76 7e-16
Plasmid replication initiator protein L Contig28 Nham3863 COG5534 39 4e-04
Plasmid rolling circle replication initiator protein and truncated derivatives L Contig28 Nham3835 COG5655 89 6e-19
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig28 Nham0130 COG1241 47 2e-06
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig28 Nham1839 COG1241 36 0.004
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig28 Nham2291 COG1241 38 0.001
Predicted ATPase involved in replication control Cdc46/Mcm family L Contig28 Nham3251 COG1241 42 8e-05
Predicted ATP-dependent endonuclease of the OLD family L Contig28 Nham0003 COG3593 41 2e-04
Predicted ATP-dependent endonuclease of the OLD family L Contig28 Nham1289 COG3593 42 1e-04
Predicted ATP-dependent endonuclease of the OLD family L Contig28 Nham1994 COG3593 69 1e-12
Predicted ATP-dependent endonuclease of the OLD family L Contig28 Nham3230 COG3593 37 0.008
Predicted ATP-dependent endonuclease of the OLD family L Contig28 Nham3828 COG3593 85 1e-17
Predicted DNA modification methylase L Contig28 Nham0469 COG1041 39 5e-04
Predicted DNA modification methylase L Contig28 Nham0569 COG1041 41 8e-05
Predicted DNA modification methylase L Contig28 Nham0696 COG1041 47 1e-06
Predicted DNA modification methylase L Contig28 Nham0803 COG1041 38 0.002
Predicted DNA modification methylase L Contig28 Nham2226 COG1041 38 0.001
Predicted DNA modification methylase L Contig28 Nham2543 COG1041 39 5e-04
Predicted DNA modification methylase L Contig28 Nham3225 COG1041 38 0.001
Predicted EndoIII-related endonuclease L Contig28 Nham0162 COG0177 276 1e-75
Predicted EndoIII-related endonuclease L Contig28 Nham3227 COG0177 113 2e-26
Predicted endonuclease containing a URI domain L Contig28 Nham0101 COG2827 105 7e-25
Predicted endonuclease containing a URI domain L Contig28 Nham1409 COG2827 98 1e-22
Predicted endonuclease distantly related to Holliday junction resolvase L Contig28 Nham0146 COG0792 103 4e-24
Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) L Contig28 Nham2279 COG0816 146 8e-37
Predicted eukaryotic-type DNA primase L Contig28 Nham0448 COG3285 341 9e-95
Predicted eukaryotic-type DNA primase L Contig28 Nham3907 COG3285 334 1e-92
Predicted HKD family nuclease L Contig28 Nham1352 COG3886 43 7e-05
Predicted methylated DNA-protein cysteine methyltransferase L Contig28 Nham0160 COG3695 60 2e-10
Predicted methylated DNA-protein cysteine methyltransferase L Contig28 Nham0663 COG3695 55 4e-09
Predicted N6-adenine-specific DNA methylase L Contig28 Nham0469 COG0116 42 7e-05
Predicted N6-adenine-specific DNA methylase L Contig28 Nham2746 COG0116 36 0.003
Predicted N6-adenine-specific DNA methylase L Contig28 Nham3142 COG0116 38 0.001
Predicted N6-adenine-specific DNA methylase L Contig28 Nham3170 COG0116 35 0.003
Predicted NTP pyrophosphohydrolase L Contig28 Nham0527 COG4119 37 6e-04
Predicted NTP pyrophosphohydrolase L Contig28 Nham1987 COG4119 192 7e-51
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake L Contig28 Nham2285 COG0758 319 2e-88
Predicted site-specific integrase-resolvase L Contig25 Nham4607 COG2452 42 1e-04
Predicted site-specific integrase-resolvase L Contig28 Nham1145 COG2452 41 2e-04
Rad3-related DNA helicase L Contig28 Nham1993 COG1199 60 6e-10
RecA-family ATPase L Contig28 Nham0343 COG3598 67 6e-12
RecA-family ATPase L Contig28 Nham2031 COG3598 137 2e-33
RecA-family ATPase L Contig28 Nham2291 COG3598 38 0.001
RecA/RadA recombinase L Contig28 Nham1616 COG0468 318 4e-88
RecA/RadA recombinase L Contig28 Nham2291 COG0468 67 2e-12
RecB family exonuclease L Contig28 Nham0057 COG2887 104 5e-23
RecB family exonuclease L Contig28 Nham1996 COG2887 44 6e-05
RecG-like helicase L Contig26 Nham4476 COG1200 42 4e-04
RecG-like helicase L Contig27 Nham4213 COG1200 43 3e-05
RecG-like helicase L Contig28 Nham0240 COG1200 37 0.008
RecG-like helicase L Contig28 Nham0400 COG1200 42 9e-05
RecG-like helicase L Contig28 Nham0535 COG1200 60 5e-10
RecG-like helicase L Contig28 Nham2053 COG1200 324 2e-89
RecG-like helicase L Contig28 Nham2055 COG1200 769 0.0
RecG-like helicase L Contig28 Nham2321 COG1200 55 1e-08
RecG-like helicase L Contig28 Nham2704 COG1200 36 0.006
RecG-like helicase L Contig28 Nham2923 COG1200 45 3e-05
RecG-like helicase L Contig28 Nham3439 COG1200 45 2e-05
RecJ-like exonuclease contains DnaJ-type Zn finger domain L Contig28 Nham0156 COG1107 48 1e-06
RecJ-like exonuclease contains DnaJ-type Zn finger domain L Contig28 Nham0163 COG1107 36 0.005
RecJ-like exonuclease contains DnaJ-type Zn finger domain L Contig28 Nham1037 COG1107 41 3e-04
RecJ-like exonuclease contains DnaJ-type Zn finger domain L Contig28 Nham2307 COG1107 37 0.005
Recombinational DNA repair ATPase (RecF pathway) L Contig28 Nham0003 COG1195 292 2e-80
Recombinational DNA repair ATPase (RecF pathway) L Contig28 Nham1289 COG1195 46 8e-06
Recombinational DNA repair ATPase (RecF pathway) L Contig28 Nham1994 COG1195 49 8e-07
Recombinational DNA repair ATPase (RecF pathway) L Contig28 Nham2830 COG1195 41 4e-04
Recombinational DNA repair ATPase (RecF pathway) L Contig28 Nham3230 COG1195 45 4e-05
Recombinational DNA repair ATPase (RecF pathway) L Contig28 Nham3828 COG1195 43 6e-05
Recombinational DNA repair protein (RecF pathway) L Contig28 Nham0464 COG0353 259 1e-70
Recombinational DNA repair protein (RecF pathway) L Contig28 Nham2248 COG1381 155 4e-39
Retron-type reverse transcriptase L Contig27 Nham4118 COG3344 131 1e-31
Retron-type reverse transcriptase L Contig28 Nham3886 COG3344 129 3e-31
Reverse gyrase L Contig26 Nham4464 COG1110 43 1e-04
Reverse gyrase L Contig27 Nham4213 COG1110 37 0.003
Reverse gyrase L Contig28 Nham1150 COG1110 41 4e-04
Reverse gyrase L Contig28 Nham2002 COG1110 37 0.004
Reverse gyrase L Contig28 Nham2053 COG1110 48 3e-06
Reverse gyrase L Contig28 Nham2055 COG1110 53 7e-08
Reverse gyrase L Contig28 Nham2321 COG1110 60 4e-10
Reverse gyrase L Contig28 Nham2437 COG1110 262 6e-71
Reverse gyrase L Contig28 Nham2839 COG1110 39 0.002
Reverse gyrase L Contig28 Nham2923 COG1110 38 0.003
Serine/threonine protein kinase L Contig28 Nham1803 COG0515 38 8e-04
Single-stranded DNA-specific exonuclease L Contig28 Nham2307 COG0608 359 1.0e-100
Site-specific recombinase DNA invertase Pin homologs L Contig25 Nham4607 COG1961 77 2e-15
Site-specific recombinase DNA invertase Pin homologs L Contig26 Nham4395 COG1961 59 8e-10
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham0143 COG1961 63 5e-11
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham0282 COG1961 83 1e-17
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham0568 COG1961 84 2e-17
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham0585 COG1961 113 7e-27
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham0796 COG1961 119 5e-28
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham1145 COG1961 121 1e-28
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham2790 COG1961 103 4e-23
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham3073 COG1961 39 1e-04
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham3847 COG1961 108 2e-25
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham3864 COG1961 74 2e-14
Site-specific recombinase DNA invertase Pin homologs L Contig28 Nham3901 COG1961 82 1e-16
Site-specific recombinase XerC L Contig25 Nham4576 COG4973 71 1e-13
Site-specific recombinase XerC L Contig26 Nham4511 COG4973 61 1e-10
Site-specific recombinase XerC L Contig28 Nham0488 COG4973 187 7e-49
Site-specific recombinase XerC L Contig28 Nham0536 COG4973 215 3e-57
Site-specific recombinase XerC L Contig28 Nham0858 COG4973 112 3e-26
Site-specific recombinase XerC L Contig28 Nham1727 COG4973 58 5e-10
Site-specific recombinase XerC L Contig28 Nham1861 COG4973 95 5e-21
Site-specific recombinase XerC L Contig28 Nham2157 COG4973 46 3e-06
Site-specific recombinase XerC L Contig28 Nham2470 COG4973 43 4e-05
Site-specific recombinase XerD L Contig25 Nham4576 COG4974 89 4e-19
Site-specific recombinase XerD L Contig26 Nham4511 COG4974 69 4e-13
Site-specific recombinase XerD L Contig26 Nham4516 COG4974 40 3e-04
Site-specific recombinase XerD L Contig28 Nham0325 COG4974 38 0.001
Site-specific recombinase XerD L Contig28 Nham0488 COG4974 300 1e-82
Site-specific recombinase XerD L Contig28 Nham0536 COG4974 220 1e-58
Site-specific recombinase XerD L Contig28 Nham0858 COG4974 161 7e-41
Site-specific recombinase XerD L Contig28 Nham1727 COG4974 67 1e-12
Site-specific recombinase XerD L Contig28 Nham1861 COG4974 100 1e-22
Site-specific recombinase XerD L Contig28 Nham2130 COG4974 51 3e-07
Site-specific recombinase XerD L Contig28 Nham2157 COG4974 83 5e-17
Site-specific recombinase XerD L Contig28 Nham2470 COG4974 78 1e-15
Site-specific recombinase XerD L Contig28 Nham2529 COG4974 39 8e-04
Site-specific recombinase XerD L Contig28 Nham2797 COG4974 32 0.010
Site-specific recombinase XerD L Contig28 Nham3311 COG4974 41 2e-04
Site-specific recombinase XerD L Contig28 Nham3365 COG4974 41 1e-04
Superfamily I DNA and RNA helicase and helicase subunits L Contig28 Nham0686 COG1112 36 0.004
Superfamily I DNA and RNA helicase and helicase subunits L Contig28 Nham3707 COG1112 42 3e-04
Superfamily I DNA and RNA helicase L Contig28 Nham0058 COG0210 134 3e-32
Superfamily I DNA and RNA helicase L Contig28 Nham0686 COG0210 36 0.006
Superfamily I DNA and RNA helicase L Contig28 Nham1995 COG0210 63 5e-11
Superfamily I DNA and RNA helicase L Contig28 Nham1997 COG0210 167 5e-42
Superfamily I DNA and RNA helicase L Contig28 Nham2739 COG0210 614 1.0e-176
Superfamily I DNA and RNA helicase L Contig28 Nham3768 COG0210 445 1.0e-126
Superfamily I DNA and RNA helicase L Contig28 Nham3829 COG0210 40 3e-04
Superfamily II DNA and RNA helicase L Contig26 Nham4464 COG0513 52 2e-07
Superfamily II DNA and RNA helicase L Contig27 Nham4213 COG0513 248 6e-67
Superfamily II DNA and RNA helicase L Contig28 Nham0240 COG0513 112 1e-25
Superfamily II DNA and RNA helicase L Contig28 Nham0400 COG0513 394 1.0e-110
Superfamily II DNA and RNA helicase L Contig28 Nham0455 COG0513 42 1e-04
Superfamily II DNA and RNA helicase L Contig28 Nham0504 COG0513 70 1e-12
Superfamily II DNA and RNA helicase L Contig28 Nham0580 COG0513 50 8e-07
Superfamily II DNA and RNA helicase L Contig28 Nham1150 COG0513 37 0.006
Superfamily II DNA and RNA helicase L Contig28 Nham1352 COG0513 62 2e-10
Superfamily II DNA and RNA helicase L Contig28 Nham1985 COG0513 46 2e-05
Superfamily II DNA and RNA helicase L Contig28 Nham2002 COG0513 104 2e-23
Superfamily II DNA and RNA helicase L Contig28 Nham2053 COG0513 84 8e-17
Superfamily II DNA and RNA helicase L Contig28 Nham2055 COG0513 64 4e-11
Superfamily II DNA and RNA helicase L Contig28 Nham2321 COG0513 402 1.0e-113
Superfamily II DNA and RNA helicase L Contig28 Nham2923 COG0513 64 5e-11
Superfamily II DNA and RNA helicase L Contig28 Nham3439 COG0513 101 2e-22
Superfamily II DNA and RNA helicase L Contig28 Nham3708 COG0513 50 2e-07
Superfamily II DNA helicase L Contig27 Nham4213 COG0514 38 0.001
Superfamily II DNA helicase L Contig28 Nham0240 COG0514 89 9e-19
Superfamily II DNA helicase L Contig28 Nham0400 COG0514 97 3e-21
Superfamily II DNA helicase L Contig28 Nham0504 COG0514 43 1e-04
Superfamily II DNA helicase L Contig28 Nham1150 COG0514 43 1e-04
Superfamily II DNA helicase L Contig28 Nham1352 COG0514 40 6e-04
Superfamily II DNA helicase L Contig28 Nham1985 COG0514 45 4e-05
Superfamily II DNA helicase L Contig28 Nham2002 COG0514 80 6e-16
Superfamily II DNA helicase L Contig28 Nham2053 COG0514 38 0.005
Superfamily II DNA helicase L Contig28 Nham2055 COG0514 53 1e-07
Superfamily II DNA helicase L Contig28 Nham2321 COG0514 113 4e-26
Superfamily II DNA helicase L Contig28 Nham2923 COG0514 55 2e-08
Superfamily II DNA helicase L Contig28 Nham3439 COG0514 729 0.0
Superfamily II DNA helicase L Contig28 Nham3708 COG0514 40 2e-04
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig28 Nham0535 COG4098 63 8e-11
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig28 Nham2053 COG4098 65 2e-11
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig28 Nham2055 COG4098 56 9e-09
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig28 Nham2923 COG4098 55 3e-08
Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) L Contig28 Nham3708 COG4098 38 0.001
Superfamily II DNA/RNA helicase SNF2 family L Contig25 Nham4656 COG0553 56 3e-08
Superfamily II DNA/RNA helicase SNF2 family L Contig26 Nham4476 COG0553 64 1e-10
Superfamily II DNA/RNA helicase SNF2 family L Contig28 Nham0400 COG0553 37 0.002
Superfamily II DNA/RNA helicase SNF2 family L Contig28 Nham0580 COG0553 80 8e-16
Superfamily II DNA/RNA helicase SNF2 family L Contig28 Nham1352 COG0553 64 6e-11
Superfamily II DNA/RNA helicase SNF2 family L Contig28 Nham2321 COG0553 44 2e-05
Superfamily II DNA/RNA helicase SNF2 family L Contig28 Nham2839 COG0553 334 3e-92
Superfamily II RNA helicase L Contig26 Nham4464 COG4581 87 6e-18
Superfamily II RNA helicase L Contig27 Nham4213 COG4581 41 1e-04
Superfamily II RNA helicase L Contig28 Nham0240 COG4581 44 3e-05
Superfamily II RNA helicase L Contig28 Nham0400 COG4581 36 0.004
Superfamily II RNA helicase L Contig28 Nham0504 COG4581 60 1e-09
Superfamily II RNA helicase L Contig28 Nham0535 COG4581 37 0.005
Superfamily II RNA helicase L Contig28 Nham1150 COG4581 78 3e-15
Superfamily II RNA helicase L Contig28 Nham2002 COG4581 72 1e-13
Superfamily II RNA helicase L Contig28 Nham2053 COG4581 44 8e-05
Superfamily II RNA helicase L Contig28 Nham2055 COG4581 37 0.005
Superfamily II RNA helicase L Contig28 Nham2321 COG4581 46 7e-06
Superfamily II RNA helicase L Contig28 Nham3439 COG4581 39 0.001
Topoisomerase IB L Contig28 Nham3998 COG3569 311 7e-86
Transcription-repair coupling factor (superfamily II helicase) L Contig28 Nham0507 COG1197 35 0.005
Transcription-repair coupling factor (superfamily II helicase) L Contig28 Nham0535 COG1197 62 1e-10
Transcription-repair coupling factor (superfamily II helicase) L Contig28 Nham2053 COG1197 1316 0.0
Transcription-repair coupling factor (superfamily II helicase) L Contig28 Nham2055 COG1197 320 2e-88
Transcription-repair coupling factor (superfamily II helicase) L Contig28 Nham2923 COG1197 120 4e-28
Transposase and inactivated derivatives L Contig25 Nham4556 COG3547 107 1e-24
Transposase and inactivated derivatives L Contig25 Nham4597 COG1943 109 7e-26
Transposase and inactivated derivatives L Contig25 Nham4599 COG3415 42 8e-05
Transposase and inactivated derivatives L Contig25 Nham4600 COG3335 37 0.002
Transposase and inactivated derivatives L Contig25 Nham4600 COG3415 43 5e-05
Transposase and inactivated derivatives L Contig25 Nham4617 COG3547 43 2e-05
Transposase and inactivated derivatives L Contig25 Nham4626 COG3547 73 2e-14
Transposase and inactivated derivatives L Contig25 Nham4638 COG3415 36 8e-04
Transposase and inactivated derivatives L Contig27 Nham4058 COG3328 84 2e-17
Transposase and inactivated derivatives L Contig27 Nham4093 COG3293 55 3e-09
Transposase and inactivated derivatives L Contig27 Nham4115 COG3547 51 2e-08
Transposase and inactivated derivatives L Contig27 Nham4117 COG3293 34 0.004
Transposase and inactivated derivatives L Contig27 Nham4119 COG3293 55 3e-09
Transposase and inactivated derivatives L Contig27 Nham4120 COG3547 127 1e-30
Transposase and inactivated derivatives L Contig27 Nham4122 COG3335 36 0.005
Transposase and inactivated derivatives L Contig27 Nham4122 COG3415 43 3e-05
Transposase and inactivated derivatives L Contig27 Nham4130 COG3415 39 6e-04
Transposase and inactivated derivatives L Contig27 Nham4131 COG3335 36 0.005
Transposase and inactivated derivatives L Contig27 Nham4131 COG3415 43 3e-05
Transposase and inactivated derivatives L Contig27 Nham4132 COG3547 88 1e-18
Transposase and inactivated derivatives L Contig27 Nham4138 COG2801 57 1e-09
Transposase and inactivated derivatives L Contig27 Nham4139 COG3547 124 1e-29
Transposase and inactivated derivatives L Contig27 Nham4140 COG2963 38 3e-04
Transposase and inactivated derivatives L Contig27 Nham4164 COG3547 88 1e-18
Transposase and inactivated derivatives L Contig27 Nham4172 COG3415 67 3e-13
Transposase and inactivated derivatives L Contig27 Nham4212 COG2801 77 2e-15
Transposase and inactivated derivatives L Contig27 Nham4215 COG3293 71 3e-14
Transposase and inactivated derivatives L Contig27 Nham4216 COG3293 55 1e-09
Transposase and inactivated derivatives L Contig27 Nham4224 COG3415 36 8e-04
Transposase and inactivated derivatives L Contig27 Nham4235 COG3335 37 0.003
Transposase and inactivated derivatives L Contig27 Nham4235 COG3415 43 5e-05
Transposase and inactivated derivatives L Contig27 Nham4241 COG3415 39 6e-04
Transposase and inactivated derivatives L Contig27 Nham4247 COG3547 60 9e-11
Transposase and inactivated derivatives L Contig27 Nham4264 COG3293 57 1e-09
Transposase and inactivated derivatives L Contig27 Nham4296 COG3547 88 1e-18
Transposase and inactivated derivatives L Contig27 Nham4297 COG3328 182 3e-47
Transposase and inactivated derivatives L Contig27 Nham4299 COG3293 64 7e-12
Transposase and inactivated derivatives L Contig27 Nham4315 COG3547 88 1e-18
Transposase and inactivated derivatives L Contig27 Nham4354 COG2963 34 0.004
Transposase and inactivated derivatives L Contig28 Nham0013 COG3666 53 4e-09
Transposase and inactivated derivatives L Contig28 Nham0109 COG3547 132 3e-32
Transposase and inactivated derivatives L Contig28 Nham0110 COG3328 351 4e-98
Transposase and inactivated derivatives L Contig28 Nham0132 COG3547 132 3e-32
Transposase and inactivated derivatives L Contig28 Nham0247 COG3666 53 4e-09
Transposase and inactivated derivatives L Contig28 Nham0318 COG4584 85 9e-18
Transposase and inactivated derivatives L Contig28 Nham0512 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham0701 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham0789 COG4584 85 9e-18
Transposase and inactivated derivatives L Contig28 Nham0807 COG3293 55 1e-09
Transposase and inactivated derivatives L Contig28 Nham0808 COG3547 137 1e-33
Transposase and inactivated derivatives L Contig28 Nham0809 COG3335 37 0.003
Transposase and inactivated derivatives L Contig28 Nham0809 COG3415 43 4e-05
Transposase and inactivated derivatives L Contig28 Nham0834 COG3547 120 2e-28
Transposase and inactivated derivatives L Contig28 Nham0835 COG2963 35 0.002
Transposase and inactivated derivatives L Contig28 Nham0856 COG2963 36 0.001
Transposase and inactivated derivatives L Contig28 Nham0901 COG4584 87 3e-18
Transposase and inactivated derivatives L Contig28 Nham1095 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham1135 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham1155 COG3415 71 3e-14
Transposase and inactivated derivatives L Contig28 Nham1156 COG3335 61 5e-11
Transposase and inactivated derivatives L Contig28 Nham1167 COG2801 63 3e-11
Transposase and inactivated derivatives L Contig28 Nham1175 COG3415 48 4e-07
Transposase and inactivated derivatives L Contig28 Nham1188 COG3335 59 2e-10
Transposase and inactivated derivatives L Contig28 Nham1189 COG3415 70 6e-14
Transposase and inactivated derivatives L Contig28 Nham1263 COG2963 33 0.008
Transposase and inactivated derivatives L Contig28 Nham1266 COG3666 78 8e-16
Transposase and inactivated derivatives L Contig28 Nham1366 COG3415 41 3e-04
Transposase and inactivated derivatives L Contig28 Nham1376 COG3666 81 1e-16
Transposase and inactivated derivatives L Contig28 Nham1378 COG3547 88 1e-18
Transposase and inactivated derivatives L Contig28 Nham1379 COG3328 300 9e-83
Transposase and inactivated derivatives L Contig28 Nham1473 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham1498 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham1594 COG3293 55 1e-09
Transposase and inactivated derivatives L Contig28 Nham1595 COG3293 53 6e-09
Transposase and inactivated derivatives L Contig28 Nham1600 COG3293 49 8e-08
Transposase and inactivated derivatives L Contig28 Nham1653 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham1690 COG3666 78 6e-16
Transposase and inactivated derivatives L Contig28 Nham1821 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham1866 COG3415 40 5e-05
Transposase and inactivated derivatives L Contig28 Nham1939 COG3547 140 1e-34
Transposase and inactivated derivatives L Contig28 Nham1954 COG3547 76 5e-15
Transposase and inactivated derivatives L Contig28 Nham1959 COG3547 131 9e-32
Transposase and inactivated derivatives L Contig28 Nham1965 COG2963 34 0.005
Transposase and inactivated derivatives L Contig28 Nham1999 COG3547 149 2e-37
Transposase and inactivated derivatives L Contig28 Nham2135 COG3293 55 1e-09
Transposase and inactivated derivatives L Contig28 Nham2136 COG3293 54 4e-09
Transposase and inactivated derivatives L Contig28 Nham2160 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham2272 COG3547 97 3e-21
Transposase and inactivated derivatives L Contig28 Nham2306 COG3547 132 3e-32
Transposase and inactivated derivatives L Contig28 Nham2499 COG3666 53 4e-09
Transposase and inactivated derivatives L Contig28 Nham2596 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham2759 COG3666 44 9e-06
Transposase and inactivated derivatives L Contig28 Nham2773 COG3547 74 2e-14
Transposase and inactivated derivatives L Contig28 Nham2774 COG4584 73 9e-15
Transposase and inactivated derivatives L Contig28 Nham2785 COG3328 86 6e-18
Transposase and inactivated derivatives L Contig28 Nham2791 COG4584 152 2e-38
Transposase and inactivated derivatives L Contig28 Nham2792 COG3436 69 2e-13
Transposase and inactivated derivatives L Contig28 Nham2793 COG3436 70 3e-13
Transposase and inactivated derivatives L Contig28 Nham2796 COG3328 298 4e-82
Transposase and inactivated derivatives L Contig28 Nham2837 COG3415 44 6e-06
Transposase and inactivated derivatives L Contig28 Nham2931 COG3293 67 7e-13
Transposase and inactivated derivatives L Contig28 Nham2934 COG3547 132 3e-32
Transposase and inactivated derivatives L Contig28 Nham2955 COG3547 88 1e-18
Transposase and inactivated derivatives L Contig28 Nham2996 COG3436 68 2e-13
Transposase and inactivated derivatives L Contig28 Nham2997 COG2963 35 0.002
Transposase and inactivated derivatives L Contig28 Nham2998 COG3293 56 2e-09
Transposase and inactivated derivatives L Contig28 Nham3007 COG3547 132 3e-32
Transposase and inactivated derivatives L Contig28 Nham3008 COG2963 48 3e-07
Transposase and inactivated derivatives L Contig28 Nham3015 COG3328 351 4e-98
Transposase and inactivated derivatives L Contig28 Nham3058 COG3547 97 2e-21
Transposase and inactivated derivatives L Contig28 Nham3060 COG3547 116 3e-27
Transposase and inactivated derivatives L Contig28 Nham3062 COG3415 47 9e-07
Transposase and inactivated derivatives L Contig28 Nham3075 COG3293 44 1e-05
Transposase and inactivated derivatives L Contig28 Nham3079 COG3547 109 4e-25
Transposase and inactivated derivatives L Contig28 Nham3083 COG3547 140 1e-34
Transposase and inactivated derivatives L Contig28 Nham3085 COG3547 109 4e-25
Transposase and inactivated derivatives L Contig28 Nham3113 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham3140 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham3262 COG3293 55 1e-09
Transposase and inactivated derivatives L Contig28 Nham3263 COG3293 54 4e-09
Transposase and inactivated derivatives L Contig28 Nham3290 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham3391 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham3414 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham3437 COG3335 61 5e-11
Transposase and inactivated derivatives L Contig28 Nham3438 COG3415 71 3e-14
Transposase and inactivated derivatives L Contig28 Nham3440 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham3552 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham3654 COG3666 77 1e-15
Transposase and inactivated derivatives L Contig28 Nham3682 COG3547 132 3e-32
Transposase and inactivated derivatives L Contig28 Nham3714 COG4584 87 3e-18
Transposase and inactivated derivatives L Contig28 Nham3769 COG3547 149 2e-37
Transposase and inactivated derivatives L Contig28 Nham3788 COG3293 57 2e-09
Transposase and inactivated derivatives L Contig28 Nham3806 COG2963 50 1e-07
Transposase and inactivated derivatives L Contig28 Nham3807 COG3436 64 4e-12
Transposase and inactivated derivatives L Contig28 Nham3808 COG3436 69 8e-13
Transposase and inactivated derivatives L Contig28 Nham3825 COG2963 33 0.006
Transposase and inactivated derivatives L Contig28 Nham3826 COG2801 58 1e-09
Transposase and inactivated derivatives L Contig28 Nham3887 COG3293 61 4e-11
Transposase and inactivated derivatives L Contig28 Nham3900 COG3547 69 3e-13
Transposase and inactivated derivatives L Contig28 Nham3914 COG4584 85 9e-18
Transposase and inactivated derivatives L Contig28 Nham3923 COG4584 76 6e-15
Transposase and inactivated derivatives L Contig28 Nham3939 COG3547 141 6e-35
Transposase and inactivated derivatives L Contig28 Nham3943 COG3547 116 2e-27
Transposase and inactivated derivatives L Contig28 Nham3945 COG4584 75 2e-15
Transposase and inactivated derivatives L Contig28 Nham3955 COG3547 142 4e-35
Transposase and inactivated derivatives L Contig28 Nham3959 COG2963 34 0.002
Transposase and inactivated derivatives L Contig28 Nham3967 COG3415 44 2e-06
Transposase and inactivated derivatives L Contig28 Nham3983 COG3436 103 3e-23
Transposase and inactivated derivatives L Contig28 Nham3993 COG3293 50 1e-07
Transposase and inactivated derivatives L Contig28 Nham3994 COG3293 60 8e-11
Transposase and inactivated derivatives L Contig28 Nham3995 COG3547 108 1e-24
Transposase and inactivated derivatives L Contig28 Nham3996 COG3547 99 4e-22
Transposase and inactivated derivatives L Contig28 Nham4013 COG3335 61 5e-11
Transposase and inactivated derivatives L Contig28 Nham4014 COG3415 71 3e-14
Transposase and inactivated derivatives IS30 family L Contig27 Nham4114 COG2826 51 1e-07
Transposase and inactivated derivatives IS30 family L Contig28 Nham1167 COG2826 46 3e-06
Transposase and inactivated derivatives IS30 family L Contig28 Nham2791 COG2826 37 0.001
Transposase and inactivated derivatives IS30 family L Contig28 Nham3847 COG2826 35 0.003
Transposase and inactivated derivatives IS5 family L Contig27 Nham4041 COG3039 91 1e-19
Transposase and inactivated derivatives IS5 family L Contig27 Nham4086 COG3039 50 1e-07
Transposase and inactivated derivatives IS5 family L Contig27 Nham4149 COG3039 97 2e-21
Transposase and inactivated derivatives IS5 family L Contig27 Nham4261 COG3039 94 2e-20
Transposase and inactivated derivatives IS5 family L Contig27 Nham4268 COG3039 100 2e-22
Transposase and inactivated derivatives IS5 family L Contig28 Nham2748 COG3039 61 1e-10
Transposase and inactivated derivatives IS5 family L Contig28 Nham2759 COG3039 35 0.004
Transposase and inactivated derivatives IS5 family L Contig28 Nham3889 COG3039 55 5e-09
Uncharacterized protein predicted to be involved in DNA repair L Contig28 Nham3959 COG1518 33 0.006
Uncharacterized protein related to Endonuclease III L Contig28 Nham0162 COG2231 71 7e-14
Uncharacterized protein related to Endonuclease III L Contig28 Nham3227 COG2231 46 5e-06
Uracil-DNA glycosylase L Contig28 Nham2258 COG1573 117 8e-28
Uracil-DNA glycosylase L Contig28 Nham3219 COG1573 166 2e-42
Zn-finger domain associated with topoisomerase type I L Contig28 Nham2437 COG0551 47 4e-06

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