ID Contig28 standard; DNA; UNC; 4406967 BP. FT CDS 107..1534 FT /locus_tag="Nham_0001" FT /product="chromosomal replication initiator protein DnaA" FT /note="TIGRFAM: chromosomal replication initiator protein FT DnaA: (8.1e-99)" FT /note="PFAM: Chromosomal replication initiator, DnaA: FT (7.1e-150)" FT /note="SMART: ATPase: (2.1e-06) " FT /note="SPTR top hit: 'Q3PPU9 Chromosomal replication FT initiator protein, DnaA. Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0001 dnaA FT category=Unassigned, evalue=0.0, 94.315789% identity hit'" FT /note="COGs: 'evalue=1.0e-106 score=378 category=L FT group=COG0593 ATPase involved in DNA replication FT initiation' " FT /note="InterPro IPR001957:IPR003593:IPR013317" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MSDIEQERWSRVKGRLRSTVGEDIYSSWFARMDLESVHGESVRMSVPTRFLKSWIQAHYAERVLACWQAELPDVHRIDLM FT VRSAMRCAAPAKEAPAADPRRPEHGDGRASTELKMVATAPASANHDALGGSPLDPRLTFASFVTGRSNTLAHAAARQVAE FT GRRGDSIMFNPLYIHAGVGLGKTHLLQAVTWAGNAGTERKVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDL FT QFLQGKSTQAEFCHTLNALIDAGRQVVVAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELRLGILKSRIEVARAHHA FT SFSVPEPVLDYLAKAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEREVRDLIRPQEPRRIKIEDIQRVVARQYNVSRS FT DLLSSRRTANVVRPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDTTLSDEVELLKRQLQE* FT " FT gene 107..1534 FT /locus_tag="Nham_0001" FT /colour=2 FT CDS 1738..2856 FT /locus_tag="Nham_0002" FT /product="DNA polymerase III, beta subunit" FT /EC_number="2.7.7.7" FT /note="TIGRFAM: DNA polymerase III, beta subunit: FT (3.4e-93)" FT /note="PRIAM: DNA-directed DNA polymerase" FT /note="PFAM: DNA polymerase III, beta chain: (2.9e-45)" FT /note="SPTR top hit: 'Q3PPU8 DNA polymerase III, beta FT chain (EC 2.7.7.7). Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0002 EC=2.7.7.7 FT category=Unassigned, evalue=0.0, 93.817204% identity hit'" FT /note="COGs: 'evalue=3e-92 score=332 category=L FT group=COG0592 DNA polymerase sliding clamp subunit (PCNA FT homolog)' " FT /note="InterPro IPR001001" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLKATDLDLEVTETLAAETATGGATTVPAHIFYDIVRK FT LPDGAQIVLEGDGDRSVLAIRAGRSRFTLQTLPENDFPDLAAGEMTHSFKLAAADIKRLIDRTQFAISTEETRYYLNGIY FT LHSAGSAKNATLRGVATDGHRLAQVDLALPNGAEGMPGVIIPRKTVGEVQRLIEDNEAEVGIELSQGKIRFTIGNVVLTS FT KLIDGTFPDYGRVIPQNNDKELIVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLSVTNPDSGSATEELEVEYASEP FT LDIGFNSRYLLDIAAQIEGEGAVLKLADPGSPTLVHDKDSKGALYVLMPMRV* " FT gene 1738..2856 FT /locus_tag="Nham_0002" FT /colour=2 FT CDS 3021..4160 FT /locus_tag="Nham_0003" FT /product="DNA replication and repair protein RecF" FT /note="TIGRFAM: DNA replication and repair protein RecF: FT (2.5e-19)" FT /note="SPTR top hit: 'Q3PPU7 RecF protein. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0003 category=Unassigned, FT evalue=0.0, 85.676393% identity hit'" FT /note="COGs: 'evalue=2e-80 score=292 category=L FT group=COG1195 Recombinational DNA repair ATPase (RecF FT pathway)' " FT /note="InterPro IPR001238:IPR001687" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MIPSRIRRLSLTHFRNYRAAALETRSDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATREEVADHRGDGSWAVSAEVEG FT ALGLATLGTGIDAPGSDAASSGRRCRIDREPAGSAAAFGDHLRMVWLTPSMDGLFGGAASERRRFFDRLVLAIDSDHSGR FT VSALERSLRSRNRLLETRNSDDHWCDAVERQTAELAVAVAAMRAQTVTRLAAALEARGAASAFPSARIGLDGWMENALLT FT EPATAVEDRYREILRANRARDAAAGRTLDGPHLTDLEVIYAPKSMPARDASTGEQKALLIGLVLAHAGLVAEMTGIAPLL FT LLDEVVAHLDPDRRGALFGELKGLGAQVWMSGADPAAFANVGAGSEIFDVDAGRIAQRQ* FT " FT gene 3021..4160 FT /locus_tag="Nham_0003" FT /colour=2 FT CDS 4459..6900 FT /locus_tag="Nham_0004" FT /product="DNA gyrase, B subunit" FT /EC_number="5.99.1.3" FT /note="TIGRFAM: DNA gyrase, B subunit: (0)" FT /note="PRIAM: DNA topoisomerase (ATP-hydrolyzing)" FT /note="PFAM: DNA topoisomerase II: (6.8e-80) DNA gyrase, FT subunit B-like: (3.1e-36) ATP-binding region, ATPase-like: FT (1.9e-32) TOPRIM: (3.5e-08)" FT /note="SPTR top hit: 'Q3PPU6 DNA gyrase, B subunit (EC FT 5.99.1.3). Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0004 EC=5.99.1.3 FT category=Unassigned, evalue=0.0, 93.111931% identity hit'" FT /note="COGs: 'evalue=0.0 score=878 category=L FT group=COG0187 Type IIA topoisomerase (DNA gyrase/topo II FT topoisomerase IV) B subunit' " FT /note="InterPro FT IPR000565:IPR001241:IPR002288:IPR003594:IPR006171:IPR011557:IPR011558" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MNESAGQQLADTEPAAPVEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATRVEVILNA FT DNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLILRIWRKDKEHLIEF FT AHGDAVAPLKVVGEANGKRGTEVTFLASRETFTNVEYDFATLEHRLRELAFLNSGVNILLSDLRRAVEKREQMMYDGGVV FT EFVKYLDRNKKAMVPEPIMIRADMNGLGVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYADAMARK FT ERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAA FT RKARELTRRKGALDVASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSE FT QIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPTLIEAGHLYIAQPPLYKVTRGKSEQY FT LKDERALEDYLIETGLDDCVFKLATGEDRSGRDLQALVEDARVIRNVLHNMHGRYNRSVIEQAAIAGVLNPRVTADVATA FT NAAADYIARRMDALADEVERGWIGRFTEGEGFSFERTVRGVKDIAMIDDALLGSADARKLDEYAAKLQEAYPRPGLLRRK FT DTETPIHGPVGLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDASERSLLQVKIKEVDEADDIFTKLMGDVVEPRRE FT FIQENSLSANVDV* " FT gene 4459..6900 FT /locus_tag="Nham_0004" FT /colour=2 FT CDS complement(7095..8228) FT /locus_tag="Nham_0005" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPU5 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:blr0817 category=Unassigned, FT evalue=1e-134, 71.551724% identity hit'" FT /note="COGs: 'evalue=4e-14 score=72.7 category=S FT group=COG4129 membrane protein' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MISYLKRTATQLWSRKVELGLGVRVTAAAFAALVVAIALHLRLPLWAVLTAIIVTQMSVGRSLKATRDYLIGTIGGALYG FT GAIAILIPHSGESGLLAVLVLAVAPLAFLAAINPSLNVATVTAIIVLLLPTMGQMSPLESAIDRILEVTVGAITGMLVSF FT LVLPSRAYGQIRVNAARVLNLLADALQELLAGLTRGRDNDALHALQDGIGHAISELNAIGIEAERERSARLSHGPDTGPL FT LRTVLRLRHDVVMIGRATVTPLPINLQLRLAQPLARLSDTMNNYLKASAEALRLGAPAPALLPVQTALEAYAAEIAAMRR FT EGLTRGLPGDMTERFFALGFSLEQMRQNLGDLERYIREWTDRPKSSAGNDEGAAGTG* FT " FT gene complement(7095..8228) FT /locus_tag="Nham_0005" FT /colour=13 FT misc_feature complement(order(7740..7805,7845..7910,7956..8021,8043..8099,8112..8168)) FT /colour=11 FT /locus_tag="Nham_0005" FT /note="5 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(8118..8228) FT /colour=11 FT /locus_tag="Nham_0005" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.649) with cleavage site probability 0.327 at FT residue 37" FT CDS 8563..9120 FT /locus_tag="Nham_0006" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPU4 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-106, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0220 category=Unassigned, FT evalue=9e-42, 49.494949% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPVFRYFLVMGCCLLGLLFVADWIWPGNAGTDAHPATVASAGSAGLKSEDLVPKDSVPKDPASTDLGAASAVLSSIDDWR FT RSEKRFERSKHDPQPIVYPDIATLAPTADRLQWERQLRYLPANHVYEARAEMPKAEAPKVAEKTRPPRKHIAHARSRARV FT IANVERPPPPRYARNTGWNPFGLFD* " FT gene 8563..9120 FT /locus_tag="Nham_0006" FT /colour=13 FT misc_feature 8581..8640 FT /colour=11 FT /locus_tag="Nham_0006" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(9150..9896) FT /locus_tag="Nham_0007" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPU3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-147, 100% FT identity hit'" FT /note="KEGG top hit: 'hch:HCH_06888 category=Unassigned, FT evalue=3e-34, 37.552743% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MMKHDSLATYPPLNTLKRVADDVWIVDGPTIAFGQPLLKMPFSTRMTIIRIGGDLLIHSPTPLTAELKTEVEGRGRPRWI FT VGPNRIHYWWIPDWHTAFPDTEVYLAPRIREQAAGRIDFDCQALDRDRGYSWDKDVATLPVEGSYMTEVVFFHRKSRTLV FT LTDLIENFEPRKLGSLLTRVLTWLGGVQHPDGSMPRDMRLSYRDKAGLRGAVETMIGWNPERIVLAHGRWYDRNGTDELR FT RAFRWLLG* " FT gene complement(9150..9896) FT /locus_tag="Nham_0007" FT /colour=13 FT CDS complement(9957..10241) FT /locus_tag="Nham_0008" FT /product="protein of unknown function DUF1330" FT /note="PFAM: protein of unknown function DUF1330: FT (3.6e-43)" FT /note="SPTR top hit: 'Q3PPU2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=2e-48, 100% identity FT hit'" FT /note="KEGG top hit: 'bmb:BruAb1_2104 category=Unassigned, FT evalue=2e-26, 56.382979% identity hit'" FT /note="COGs: 'evalue=3e-26 score=109 category=S FT group=COG5470 Uncharacterized conserved protein' " FT /note="InterPro IPR010753" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAKGYWVVRVSVHDSERYPDYLAAAQPAFEKFRANFIVGGGPFDSMEGTSRARNVVVEFKDLATAKACYQSPEYQAAKAIRQTCSEADFIIIEG*" FT gene complement(9957..10241) FT /locus_tag="Nham_0008" FT /colour=13 FT CDS 10492..11412 FT /locus_tag="Nham_0009" FT /product="Pirin-like" FT /note="PFAM: Pirin-like: (3.7e-54)" FT /note="SPTR top hit: 'Q3PPU1 Pirin, N-terminal:Pirin, FT C-terminal. Nitrobacter hamburgensis X14., evalue=1e-180, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0219 category=Unassigned, FT evalue=1e-170, 91.830065% identity hit'" FT /note="COGs: 'evalue=6e-68 score=251 category=R FT group=COG1741 Pirin-related protein' " FT /note="InterPro IPR003829:IPR008778" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSWFPSNDPVLGDPLTCDALELVIVPRIRDLGDGFAVRRALPHGKRQMVGPFIFFDHFGPVQFVSGKGMDVRPHPHIGLA FT TVTYLFDGSIMHRDSEGNIQEIQPGAMNLMTAGRGIAHSERTPDTQRASGQKMLGLQSWIALPAGREEIAPSFQHYGADS FT LPTVQDKGFRARVIAGNSFGAASPVEMVSPWFYVEVSLDAGMSAPLDADHEERAIYVVDGEIEIAGDRHEAPQLLIFRPG FT DRITVRATKPTRMMFLGGDALEGPRHIWWNFVSSSKERIEQAKEDWKTGRFAPVPNEHEFIPLPEN* FT " FT gene 10492..11412 FT /locus_tag="Nham_0009" FT /colour=11 FT CDS complement(11419..12420) FT /locus_tag="Nham_0010" FT /product="PfkB" FT /note="PFAM: PfkB: (3.4e-42)" FT /note="SPTR top hit: 'Q3PPU0 Carbohydrate kinase, PfkB. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0218 pfkB EC=2.7.1.20 FT category=Unassigned, evalue=1e-167, 90.361446% identity FT hit'" FT /note="COGs: 'evalue=4e-38 score=152 category=G FT group=COG0524 Sugar kinases ribokinase family' " FT /note="InterPro IPR002173:IPR011611" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MTSAKYDVLGIGNAIFDVLVRTDEGFLAAHGMVKGGMALIDEARAASIYADMGPATEMSGGSAANTIVGLAGFGARAAYV FT GKVKDDQIGRLYTHDIRAAKVAFDTPPASGGPATGCSYILVTPDGERTMNTYLGAAQDLSPADIDAETVAAASILYLEGY FT LWDPKAAKDAFLKASQIAHGANRQVALTLSDAFCVDRYRDEFLQLMRSDAVDLVFANETELRSLYQTSDFDTALAQLRKD FT VALGVVTRSEKGCVVATKDDVVAVPACPIDGLVDTTGAGDLFAAGFLFGLVRGTSHENAGRLGALAAAEVIQHIGARPQV FT SLKELAQANGLPA* " FT gene complement(11419..12420) FT /locus_tag="Nham_0010" FT /colour=4 FT CDS 12511..14100 FT /locus_tag="Nham_0011" FT /product="integral membrane protein MviN" FT /note="TIGRFAM: integral membrane protein MviN: (1.1e-97)" FT /note="PFAM: virulence factor MVIN-like: (1.5e-89)" FT /note="SPTR top hit: 'Q3PPT9 Virulence factor MVIN-like. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0217 category=Unassigned, FT evalue=0.0, 80.154143% identity hit'" FT /note="COGs: 'evalue=5e-72 score=265 category=R FT group=COG0728 Uncharacterized membrane protein putative FT virulence factor' " FT /note="InterPro IPR004268" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPSSAAPDIAMIRSVLTVSSGTLASRLLGFARDALTAALLGAGPVADAFLMAFQLINVIRRMLSEGALNAALVPAWMRMR FT DGSGLAAASAFAGAVLGTVSATLIALAVIVGVAMPLLMTLLAPGFAGRDSLQLAVTDARLMLPYLAFAGPAAVIMSLMNA FT RHRFAITSFSPLLFNVALILVISVLLLLHQDSHSAAMMMAATVGAAGLLQLLVLSIPGRRDNIASPLRLSFDTGMRDFAR FT KAVPGMIANSGPQLLIVAGAIVASVSPSAVAWLYFANRLIELPLGMVGVAIGTVLVPEMSRALNKGDRLALVHAESRGIE FT LAAALALPATFGLIVLSEPIVRVLFEHGAFTAADTQATALALGCLGLGLPAYVLIKALSPAFFARGNTMTPLLAALTGIA FT VAIVLALVFGRLFGIGGIAVAVAVGAWSNAASLARSVAATFGFSIDAEARRRLPRIVLAALLMGGLLWLAVRLLPPMPDA FT HELLQAAMLVVLIVAGIAVYGLLLLAFRVIVWSDMQAALAQSRSSDLHT* " FT gene 12511..14100 FT /locus_tag="Nham_0011" FT /colour=11 FT misc_feature order(12610..12678,12817..12885,12928..12981,13000..13068,13096..13164,13270..13338,13348..13407,13465..13533,13576..13644,13681..13749,13759..13827,13864..13932,13975..14043) FT /colour=11 FT /locus_tag="Nham_0011" FT /note="13 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 14196..15239 FT /locus_tag="Nham_0012" FT /product="tryptophanyl-tRNA synthetase" FT /EC_number="6.1.1.2" FT /note="TIGRFAM: tryptophanyl-tRNA synthetase: (1.8e-113)" FT /note="PRIAM: Tryptophan--tRNA ligase" FT /note="PFAM: aminoacyl-tRNA synthetase, class Ib: (7e-85)" FT /note="SPTR top hit: 'Q3PPT8 Tryptophanyl-tRNA synthetase, FT class Ib (EC 6.1.1.2). Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0216 EC=6.1.1.2 FT category=Unassigned, evalue=0.0, 92.507205% identity hit'" FT /note="COGs: 'evalue=1.0e-102 score=364 category=J FT group=COG0180 Tryptophanyl-tRNA synthetase' " FT /note="InterPro IPR001412:IPR002305:IPR002306" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTTRVFSGVQPTGNLHLGNYLGAIVNFVKLQADHQCLYCVVDLHAITVPVAVWGGPDELRRNTREVTAAFIASGIDPKQH FT IIFNQSQVAGHAELTWVFNCVARLGWLNRMTQFKEKAGKDRENASIGLYDYPVLMASDILLYRATHVPVGEDQKQHLELS FT RDIAQKFNNDFSASIAGNGHGDGFFPLPEPVITGPATRVMSLRDGTKKMSKSDPSDYSRINLTDDADTIAQKIRKAKTDP FT EPLPSEEKGLESRPEADNLVGIYAALSGKPKPEVLAQFGGAQFSGFKSNLVDLAVAKLSPIAAEMKRLTDDPAYVEGILI FT EGADRARAIASETMNAVKDIVGFIRKR* " FT gene 14196..15239 FT /locus_tag="Nham_0012" FT /colour=7 FT CDS 15511..15861 FT /locus_tag="Nham_0013" FT /product="ISGsu3, transposase " FT /note="SPTR top hit: 'Q3PWT6 ISGsu3, transposase. FT Nitrobacter hamburgensis X14., evalue=1e-60, 100% identity FT hit'" FT /note="KEGG top hit: 'gsu:GSU2772 category=Unassigned, FT evalue=1e-26, 54.368932% identity hit'" FT /note="COGs: 'evalue=4e-09 score=53.1 category=L FT group=COG3666 Transposase and inactivated derivatives' " FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MRGSDERSGSLFSYVDLEARIRSDHPLRTIRQIANAALNDLSRDFDKLYTAFGRPSIAPEKLLRAMLLQAFYGIRSERQL FT MERLEFDLLLRWFVGLGVDDPVWGPLDLLEEPRPIA* " FT gene 15511..15861 FT /locus_tag="Nham_0013" FT /colour=11 FT CDS 15896..16621 FT /locus_tag="Nham_0014" FT /product="transposase, IS4" FT /note="PFAM: transposase, IS4: (0.00012)" FT /note="SPTR top hit: 'Q3PZR2 Transposase, IS4. Nitrobacter FT hamburgensis X14., evalue=1e-135, 100% identity hit'" FT /note="KEGG top hit: 'gme:Gmet_2883 category=Unassigned, FT evalue=2e-60, 55.895197% identity hit'" FT /note="InterPro IPR002559" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MGQHQVKRLLSSEHFSVDGTLIEAWASIKSFRRKDGGDQDSDGPGRNAERSFHNEKRCNETHQSTTDPEARLYKKGGGQP FT AKLCYIGHALMENRNGLAVLGGVSRATGTAERDQALALIDCHRGQSERRITLGADKAYDVTAFVEDLRRRSVTPHIAIDG FT HLSKTGKPRKTAIDQRTLRHAGYAVSQRCRKRIEEVFGWIKASAGLAKIKLRGRDRVNATFTLALAAYNLIRLPKLLAAA FT A* " FT gene 15896..16621 FT /locus_tag="Nham_0014" FT /colour=11 FT CDS 16865..17359 FT /locus_tag="Nham_0015" FT /product="UspA" FT /note="PFAM: UspA: (1.9e-05)" FT /note="SPTR top hit: 'Q3PPT5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=2e-87, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0008 uspA FT category=Unassigned, evalue=4e-81, 90.243902% identity FT hit'" FT /note="COGs: 'evalue=4e-05 score=41.1 category=T FT group=COG0589 Universal stress protein UspA and related FT nucleotide-binding proteins' " FT /note="InterPro IPR006016" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSAQRRSYETGHKPKYLVVVDDSAEWDRAVYYASRRAIRVGGGIVMLRVIETEDRNQEWLGVAEVMRAEAYEGANAALDR FT AAGRANGIAAITPERVIREGNPLEQILDVIVQDVDISMLVLAAAGGPEGPGPIITTLAKTAGNFPIPVTIVPGSLTDDEV FT DALS* " FT gene 16865..17359 FT /locus_tag="Nham_0015" FT /colour=11 FT CDS 17538..18113 FT /locus_tag="Nham_0016" FT /product="nitrogen-fixing NifU-like" FT /note="PFAM: nitrogen-fixing NifU-like: (4.8e-29)" FT /note="SPTR top hit: 'Q3PPT4 Nitrogen-fixing NifU, FT C-terminal. Nitrobacter hamburgensis X14., evalue=1e-107, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0009 nifU FT category=Unassigned, evalue=8e-92, 88.020833% identity FT hit'" FT /note="COGs: 'evalue=3e-24 score=105 category=O FT group=COG0694 Thioredoxin-like proteins and domains' " FT /note="InterPro IPR001075" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MFIQTEVTPNPATLKFLPGRTVLGKGTMEFNGPDTAGRSQLAVRLFAVHGVTGVFYGSDFITVTKDASDWQHLKPAILGV FT IMEHYMSGAPLLADGETAGNDEANKDEAVEFFDEADAETVTLIKDLIETRVRPGVADDGGDITFRGFKDGVVYVNMKGSC FT SGCPSSTVTLRNGIQNLLKHFVPEVVEVRPV* " FT gene 17538..18113 FT /locus_tag="Nham_0016" FT /colour=9 FT CDS complement(18143..19273) FT /locus_tag="Nham_0017" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPT3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0010 category=Unassigned, FT evalue=1e-149, 70.398010% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTDVTGTRYYDGAVYSAGSPRKAVPQNILGAAALGCIALACAWTLYANVSGGDPELVTASLPPATSIRSVEPADRIAAAY FT EALREMPAPQAVQGTTEARTAAAASIDDPAARARTALLYGPRFLGPPPGTFRLSAEPAQAAREVASLPAQAGPETLPLPR FT APQLVAVVVPMPAPRPAELRQVQVAAGPSRREVAQASAAAALEPEPKKPSIFERLFGKPASGGLQLAFAAPDGGVTSEGE FT SLTLGRIPQYDQFTAVYDISARTVYLPDGTKLEAHSGLGKMMDDPRYADRKMRGVTPPHTYELSLRERPFHGVEAIRLKP FT VGGEDKIYGRTGLLAHTYMLGPNGDSNGCVSFRNYNAFLRAYKSGRVKRMVVVAKL* FT " FT gene complement(18143..19273) FT /locus_tag="Nham_0017" FT /colour=13 FT misc_feature complement(19133..19189) FT /colour=11 FT /locus_tag="Nham_0017" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 19577..20275 FT /locus_tag="Nham_0018" FT /product="peptidase M22, glycoprotease" FT /note="PFAM: peptidase M22, glycoprotease: (4e-22)" FT /note="SPTR top hit: 'Q3PPT2 Peptidase M22, glycoprotease. FT Nitrobacter hamburgensis X14., evalue=1e-128, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0011 EC=3.4.24.57 FT category=Unassigned, evalue=1e-107, 83.189655% identity FT hit'" FT /note="COGs: 'evalue=6e-34 score=137 category=O FT group=COG1214 Inactive homolog of metal-dependent FT proteases putative molecular chaperone' " FT /note="InterPro IPR000905" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MLVLAIDTALDACAAGVLDTKAGRLIAHESLPMKRGHAEALMPLIARVVESAGIAFAALDRIAVTTGPGSFTGLRVGLSA FT ARGIALAANKPAVGVTTLMAYAAPVVGENREAPVISAIDARHDHVYFQAVSGNGSTLVRPHVAPVEEALAASRFGAPHLV FT GNAAKLLADRWPAHAPPPVAVDPQAAPDIAWVAWLGAAVSPDTAPPRPYYLRAPDAKPAGDLLRKTAKPAAS* FT " FT gene 19577..20275 FT /locus_tag="Nham_0018" FT /colour=9 FT CDS 20272..20754 FT /locus_tag="Nham_0019" FT /product="ribosomal-protein-alanine acetyltransferase" FT /note="TIGRFAM: ribosomal-protein-alanine FT acetyltransferase: (2.9e-22)" FT /note="PFAM: GCN5-related N-acetyltransferase: (3.1e-13)" FT /note="SPTR top hit: 'Q3PPT1 Ribosomal-protein-alanine FT acetyltransferase. Nitrobacter hamburgensis X14., FT evalue=2e-86, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0012 EC=2.3.1.128 FT category=Unassigned, evalue=3e-74, 87.500000% identity FT hit'" FT /note="COGs: 'evalue=1e-12 score=65.8 category=R FT group=COG0456 Acetyltransferases' " FT /note="InterPro IPR000182:IPR006464" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MMTWFTGKERATPVVEAASPHDAARLAAIHGASFHRGWGEGEFELMIAERNTLVQRLRLRTTVIGFAVSRIGADEAEILS FT IAIDAGHRGQRFSRDLLFTHLGYLAGRGVRTVFLEVEENNQPARRLYERAGFAVTGRRERYYREAGGQELNALVMRRDLS FT * " FT gene 20272..20754 FT /locus_tag="Nham_0019" FT /colour=11 FT CDS 20911..21360 FT /locus_tag="Nham_0020" FT /product="ferric uptake regulator, FUR family" FT /note="PFAM: ferric-uptake regulator: (1.7e-56)" FT /note="SPTR top hit: 'Q3PPT0 Ferric-uptake regulator. FT Nitrobacter hamburgensis X14., evalue=4e-80, 100% identity FT hit'" FT /note="KEGG top hit: 'bja:bll0797 fur category=Unassigned, FT evalue=5e-74, 92.567568% identity hit'" FT /note="COGs: 'evalue=2e-32 score=131 category=P FT group=COG0735 Fe2+/Zn2+ uptake regulation proteins' " FT /note="InterPro IPR002481" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTALKPTSAQTSTTIEARCAATGMRMTEQRRVIARVLAEASDHPDVEELYRRCVAVDDKISISTVYRTVKLFEDAGIIER FT HDFREGRARYETMRDSHHDHLINLRDGTVIEFTSDEIEKLQAEIARKLGYRLVDHRLELYCVPMDDDKS* FT " FT gene 20911..21360 FT /locus_tag="Nham_0020" FT /colour=9 FT CDS 21543..22964 FT /locus_tag="Nham_0021" FT /product="tRNA-i(6)A37 modification enzyme MiaB" FT /note="TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB: FT (3.2e-155)" FT /note="PFAM: deoxyribonuclease/rho motif-related TRAM: FT (0.0097) protein of unknown function UPF0004: (1.3e-43) FT Radical SAM: (5.3e-32)" FT /note="SMART: Elongator protein 3/MiaB/NifB: (9.9e-60) " FT /note="SPTR top hit: 'Q3PPS9 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0014 miaB FT category=Unassigned, evalue=0.0, 85.957447% identity hit'" FT /note="COGs: 'evalue=1.0e-142 score=497 category=J FT group=COG0621 2-methylthioadenine synthetase' " FT /note="InterPro FT IPR002792:IPR005839:IPR006463:IPR006638:IPR007197" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTPPRKLHIKSYGCQMNVYDAQRMVDTLAAEGFVETASAEEADLVILNTCHIREKASEKVYSELGRLRAAKDQAARDGRE FT MSVVVAGCVAQAEGDEIIRRAPVVDVVVGPQSYHHLPQLLARAKADGRALETEFPVEDKFGFLPQPSRQAIRARGISAFV FT TVQEGCDKFCTFCVVPYTRGAEVSRPVAKIVEDVQRLADNGVREITLIGQNVNAYHGDGPDGRPWPFGKLLHRLADIPGI FT VRLRYSTSHPRDVEDSLIEAHRDLGALMPFVHLPVQSGSDRILEAMNRRHTADDYRRVVDRFRHVRQDIAFSSDFIVGFP FT GETEQDFTATLALVTQIGYAGAYSFKYSPRPGTPAAEMKETVSTADMDERLVRLQNLIDSQQSAFNRAAVGTTVDVLFER FT AARNPGQIVGRTAYLQPAHVVASADIIGQILPVTVASLERYSLLGSLASAPASRASADDAPPVGASSPAIMGV* FT " FT gene 21543..22964 FT /locus_tag="Nham_0021" FT /colour=7 FT CDS 22969..24018 FT /locus_tag="Nham_0022" FT /product="PhoH-like protein" FT /note="PFAM: PhoH-like protein: (6e-126) KH, type 1: FT (0.00051)" FT /note="SPTR top hit: 'Q3PPS8 PhoH-like protein:KH, type 1. FT Nitrobacter hamburgensis X14., evalue=0.0, 99% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0015 category=Unassigned, FT evalue=0.0, 94.555874% identity hit'" FT /note="COGs: 'evalue=3e-97 score=349 category=T FT group=COG1702 Phosphate starvation-inducible protein PhoH FT predicted ATPase' " FT /note="InterPro IPR003714:IPR004088" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="LPKSASDSPSLAPSRKLDMQAPPETQVVIDFDDNRAVSALVGPYGQNLAQLERRLGVVVDSRGNHITIAGSRDGCDAGRR FT VLETLYTQAAQGHDLSQGEVEGAIRAVIAQGSLFEYDAKAPRSTFEAINLRKRPVRARTAAQDLYIRALKRHELVFGIGP FT AGTGKTWLAVAQAAQLFERKEVDRIILTRPAVEAGERLGFLPGDLREKVDPYLRPIYDALYDLMDSRIVERALQSGEIEI FT APLAFMRGRTLTNAAIILDEAQNTTSMQMKMFLTRLGENSRMIVTGDPSQVDLPNGQTSGLAEATRLLDGVEGVAQVKFT FT AGDVIRHELVARIVAAYEGLPPRPAAGKP* " FT gene 22969..24018 FT /locus_tag="Nham_0022" FT /colour=15 FT CDS 24020..24592 FT /locus_tag="Nham_0023" FT /product="protein of unknown function UPF0054" FT /note="PFAM: protein of unknown function UPF0054: FT (7.6e-39)" FT /note="SPTR top hit: 'Q3PPS7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-125, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0016 category=Unassigned, FT evalue=2e-79, 79.347826% identity hit'" FT /note="COGs: 'evalue=2e-40 score=159 category=R FT group=COG0319 metal-dependent hydrolase' " FT /note="InterPro IPR002036" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MDVENDRPPRRGAAGERNSGTMIYPALPATEVLVVAECWRAEAGAEAIIHRAVETAAGMVDTDTGDAELAIMLTDDAGIR FT TLNANWRGIDKPTNVLSFPALQPTGAPSPDDAPRMLGDIAIAYETLRREACDEHKPFDHHLSHLTIHGFLHLIGYDHETD FT EEAGEMENLERKILARLGIPDPYAPQERMA* " FT gene 24020..24592 FT /locus_tag="Nham_0023" FT /colour=11 FT CDS 24593..25717 FT /locus_tag="Nham_0024" FT /product="CBS:transporter-associated" FT /note="PFAM: CBS: (1.2e-26) transporter-associated region: FT (7.8e-17)" FT /note="SPTR top hit: 'Q3PPS6 CBS:Transporter-associated FT region precursor. Nitrobacter hamburgensis X14., FT evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0017 category=Unassigned, FT evalue=0.0, 89.189189% identity hit'" FT /note="COGs: 'evalue=3e-57 score=215 category=R FT group=COG1253 Hemolysins and related proteins containing FT CBS domains' " FT /note="InterPro IPR000644:IPR005170" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VSPEEEPSDIRPPQDNRNLPVPVHNGEVLRPASERWLMRAIRSLFGWKAGSVRADLQVVLDASTPDETSFTAVERAMLRN FT ILNLHERRIADVMVHRADIVAVKRDIPLGELINLFESAAHSRLVVYHENLDDPEGIVHIRDLLAFMAARARTAMPSKAKR FT KKAPPAGLDLRAIDLALPLCEANITRKLLYVPPSMPAIDLLAQMQATRIHLALVVDEYGGTDGLVSLEDIVEQIVGEIDD FT EHDGDEPPSIVRQADHSFIADARASLEDVRAMIGDEFVIGEAGEDVDTLGGFLVTHVGRLPVRGEVISGPGPFEIEVLDA FT DPRRVKRLRIGLRKERPAVRPRDGRRREAAPDAPSQPQGDPASPSLPDDGGETP* " FT gene 24593..25717 FT /locus_tag="Nham_0024" FT /colour=11 FT CDS 25714..27339 FT /locus_tag="Nham_0025" FT /product="apolipoprotein N-acyltransferase" FT /note="TIGRFAM: apolipoprotein N-acyltransferase: FT (6.8e-98)" FT /note="PFAM: Nitrilase/cyanide hydratase and FT apolipoprotein N-acyltransferase: (0.00013)" FT /note="SPTR top hit: 'Q3PPS5 Apolipoprotein FT N-acyltransferase precursor. Nitrobacter hamburgensis FT X14., evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0018 category=Unassigned, FT evalue=0.0, 87.686567% identity hit'" FT /note="COGs: 'evalue=5e-92 score=331 category=M FT group=COG0815 Apolipoprotein N-acyltransferase' " FT /note="InterPro IPR003010:IPR004563" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VSLSLAGSARTTGLAVTLSWGWKRAVIALLAGAASSLAMEPFNAWPLLFVTFPIAIWLIDGAGAGRIGGVPAAALAGWLF FT GFGYFVPGLYWIGNAFLVDAQTFAWLMPFAVIGLPAYLALFTALGFALARLIWTRDASRILALAVALTVGEWLRGHVLTG FT FPWNAFGYALTEPLALAQTASLIGLWGLTFLSVAIFASPAVLIDGRSRSQRPWIAPVTAVSLLLAMGVYGAVRLSRHPTE FT FTDNVKLRIMQPNLAQDVRFNYSAKAAVMHKYLTLSDRATGPHSTGVSSATILIWPESAFPFFLTREADAMAEIADLLPK FT GTILITGAVRAPDLPPGVRITRAYNSIYVIDDDGTILSTYDKLHLVPFGEFLPFQGLMEKLGFVQLTKVQGGFIPGTGRR FT TIALPNAPSVLPLICYEAIFPGDIESRGGRPGWIVNLTNDGWFGISTGPHQHLQQARMRAIEEGLPLVRAANTGISVVTD FT PVGRIVAQLDLGVEGVLDSRLPVAIAPTPYARAGDIPAAIMVTIALVVVIRRRREHERRRV* FT " FT sig_peptide 25714..25830 FT /colour=11 FT /locus_tag="Nham_0025" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.798) with cleavage site probability 0.780 at FT residue 39" FT gene 25714..27339 FT /locus_tag="Nham_0025" FT /colour=9 FT misc_feature order(25750..25818,25846..25914,25933..26001,26044..26112,26131..26199,26257..26316,26350..26409,27235..27303) FT /colour=11 FT /locus_tag="Nham_0025" FT /note="8 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 27538..27957 FT /locus_tag="Nham_0026" FT /product="transcriptional regulator, XRE family" FT /note="PFAM: helix-turn-helix motif: (2.8e-12)" FT /note="SPTR top hit: 'Q3PPS4 Helix-turn-helix motif. FT Nitrobacter hamburgensis X14., evalue=2e-71, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0019 category=Unassigned, FT evalue=1e-67, 93.525180% identity hit'" FT /note="COGs: 'evalue=6e-09 score=53.1 category=K FT group=COG1396 transcriptional regulators' " FT /note="InterPro IPR001387" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSTKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQISDILQVPVSFLFEGSPGTGI FT AVAGGLSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRRSIVDLVEQIAAREPPDRR* FT " FT gene 27538..27957 FT /locus_tag="Nham_0026" FT /colour=11 FT CDS 27995..28762 FT /locus_tag="Nham_0027" FT /product="conserved hypothetical protein" FT /EC_number="2.1.1.33" FT /note="TIGRFAM: conserved hypothetical protein: (2.8e-23)" FT /note="PRIAM: tRNA (guanine-N(7)-)-methyltransferase" FT /note="PFAM: putative methyltransferase: (1.1e-49)" FT /note="SPTR top hit: 'Q3PPS3 Hypothetical protein (EC FT 2.1.1.33). Nitrobacter hamburgensis X14., evalue=1e-150, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0020 EC=2.1.1.33 FT category=Unassigned, evalue=1e-110, 77.821012% identity FT hit'" FT /note="COGs: 'evalue=1e-52 score=199 category=R FT group=COG0220 S-adenosylmethionine-dependent FT methyltransferase' " FT /note="InterPro IPR003358:IPR004395" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTAAASDPHNPRSSADDTASPRCESGQGSFFGRRKGHKLRPHQNGLIEHLLPRLSLDPGASGPSDPATLFGRPVKEMRIE FT IGFGGGEHLVAEALAFPRTGFIGCEPYVNGMAKILSQIEAHDIGNIRLLAGDASELLAWLPRASLARIDLIHPDPWPKRR FT HWKRRFVQDATVAEMARVLRPGGEFRFVSDIADYCAWTLSHLARSPGFLWLAERATDWHNPWPDYTMTRYGRKAEREGRR FT AAYLRFRRESDAAQA* " FT gene 27995..28762 FT /locus_tag="Nham_0027" FT /colour=13 FT CDS 29091..29882 FT /locus_tag="Nham_0028" FT /product="protein of unknown function DUF150" FT /note="PFAM: protein of unknown function DUF150: FT (1.6e-48)" FT /note="SPTR top hit: 'Q3PPS2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0021 category=Unassigned, FT evalue=1e-124, 85.606061% identity hit'" FT /note="COGs: 'evalue=1e-35 score=144 category=S FT group=COG0779 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR003728" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTDPVDQIPDHELLDEPRLVVEPGVAARVSSVVAPVLQGMGYRLVRIKVSGEYGCTVQIMAERPDGSMQIEDCEAISKAL FT SPVLDVADPIDKAYRLEISSPGIDRPLVRRSDFERHAGHLVKVEMAVAHQGRKRFRGILQGVKDNAIRLHRDDVQNVDES FT EVLLVMEDIADARLVLTDELIAESMRRGKIAEREMKRDLGILPPPPPHAKNDPARSPARRNAPKPKLKSTAKAHEKKPPK FT NTKEHRLAAERLRRGEIDPIEGE* " FT gene 29091..29882 FT /locus_tag="Nham_0028" FT /colour=13 FT CDS 29886..31496 FT /locus_tag="Nham_0029" FT /product="NusA antitermination factor" FT /note="TIGRFAM: transcription termination factor NusA: FT (1.4e-182) Transcription termination factor NusA, FT C-terminal duplication: (7.1e-18)" FT /note="PFAM: RNA binding S1: (3.6e-07) KH, type 1: FT (0.025)" FT /note="SMART: KH: (0.00083) " FT /note="SPTR top hit: 'Q3PPS1 Transcription termination FT factor NusA:Transcription termination factor NusA, FT C-terminal duplication. Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0022 nusA FT category=Unassigned, evalue=0.0, 95.344507% identity hit'" FT /note="COGs: 'evalue=1e-51 score=197 category=K FT group=COG0195 Transcription elongation factor' " FT /note="InterPro FT IPR003029:IPR004087:IPR004088:IPR010213:IPR010214" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MAAVSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDVHAEIHPKTGQLQLTRHMLVVDEIENAANQ FT ISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQKVREAERDRQYQEFKDRIGDIVNGIVKRVEYGSVIVDL FT GRGEAVVRRDEMLPREVFRNGDRVRAYIFDVRRETRGPQIFLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAK FT IGVISRDSSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAKVVIDEDRERIEVVVPDTNNQ FT LSLAIGRRGQNVRLASQLTGWDIDILTEQEESERRQADFENATRMFMEALNVDEVVGQLLASEGFMSVEELTLVETRELA FT GIEGFDDETANELQSRAREYLEQLEAELDNRRKELGVDDALKTVPGVTSKMLVKLGENEVRTVEDLAGCATDDLVGWTER FT KDGEAVKHAGYLDGIEVSREDAEAIIMQARLIAGWITEADLAKSAEEAPAAEDQPA* FT " FT gene 29886..31496 FT /locus_tag="Nham_0029" FT /colour=6 FT CDS 31572..32237 FT /locus_tag="Nham_0030" FT /product="protein of unknown function DUF448" FT /note="PFAM: protein of unknown function DUF448: FT (4.3e-20)" FT /note="SPTR top hit: 'Q3PPS0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-117, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0023 category=Unassigned, FT evalue=4e-98, 84.162896% identity hit'" FT /note="COGs: 'evalue=1e-15 score=76.9 category=K FT group=COG2740 nucleic-acid-binding protein implicated in FT transcription termination' " FT /note="InterPro IPR007393" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MLAIADPADLDDGPRTNRPATTRMCAVTREVRPIGELIRFVVSPSGEVIADLKRKLPGRGLWISASHATVAEAARRHHFS FT KGFKRDVRVSASLADETGQSLARSAIDALAVVAKAGQVVAGFAKVEDALLRRQAVALLHAADGAADGIRKLDAIVKKTAA FT ESRETREIPVISALASAELDLALCRSNVIHAAVLAGPAGRTFLSRSQTLVRYRDGGQRQGS* FT " FT gene 31572..32237 FT /locus_tag="Nham_0030" FT /colour=6 FT CDS 32305..34911 FT /locus_tag="Nham_0031" FT /product="translation initiation factor IF-2" FT /note="TIGRFAM: translation initiation factor IF-2: FT (4.7e-238) Small GTP-binding protein domain: (7.6e-31)" FT /note="PFAM: protein synthesis factor, GTP-binding: FT (1.3e-49) GTP-binding protein, HSR1-related: (2.2e-08) FT elongation factor Tu, domain 2: (6.4e-09) translation FT initiation factor IF-2-like: (1.1e-17)" FT /note="SPTR top hit: 'Q3PPR9 Initiation factor 2:Small FT GTP-binding protein domain. Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0024 infB FT category=Unassigned, evalue=0.0, 93.692661% identity hit'" FT /note="COGs: 'evalue=0.0 score=636 category=J FT group=COG0532 Translation initiation factor 2 (IF-2; FT GTPase)' " FT /note="InterPro FT IPR000178:IPR000795:IPR002917:IPR004161:IPR005225:IPR006847" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MVDTKNPGDKTLSVGPSKTLTLKPRVEQGTVRQSFSHGRTKQVVVEKRGKRRIGGDAPAAEPVAASEPTVARAPRIPVRP FT APPAASRANSGVVLRTLTEDERTARASALAEAKIRAEEERRIAEAEAARRNSKEGIEQAEREAAEARRKAEEERHRQEEE FT AKRKAELEAKRRFGESETKAAPAKTTTTTTRAAPPARPAAVAADGSDEEEAPRLVRRPGGGPARPVVAPKPAAKPAPAKQ FT RGRLTLVTALSADDVRERSIASFRRRTQRLKGHASNEPKEKLIREVIVPEAITIQELANRMAERAVDVIRMLMKQGAMHK FT ITDVIDADTAQLIAEELGHTVKRVAASDVEEGLFDADDDSTVVEPRSPVVTVMGHVDHGKTSLLDAVRHANVVSGEAGGI FT TQHIGAYQVTSPDGKKITFIDTPGHAAFTAMRARGAKVTDIVVLVVAADDGVMPQTVEAINHAKAAKVPMIIAINKIDKP FT DAKPERVRTELLQHEVQVESMGGQVIDVEVSAKNKTNLDKLLEMISLQADLLDLKTNASRPAEGTVIEAKLDRGRGPVAT FT VLVQRGTLRVGDIIVAGAEMGRVRALISDQGETVDEAGPSVPVEVLGFNGPPEAGDRLAVVENEARARQVTSYRAHQKRE FT NAAASSSGMRGSLEQMMSQLKTAGRKDFPLVIKADVQGSLEAILGSLEKLGTEEVAARILHAGVGGISESDVTLAEGFNA FT AIIGFSVRANKEAAAAAKRNGIEIRYYNIIYDLVDDVKKAMSGLLAPTLRETMLGNAEILEVFNISKVGKVAGCRVTDGN FT VERGANVRLIRENVVVHEGKLSTLKRFKDEVKEVQSGQECGMAFESYHDMRVGDVIECYRVETIQRSL* FT " FT gene 32305..34911 FT /locus_tag="Nham_0031" FT /colour=7 FT CDS 35047..35460 FT /locus_tag="Nham_0032" FT /product="ribosome-binding factor A" FT /note="PFAM: ribosome-binding factor A: (3.4e-23)" FT /note="SPTR top hit: 'Q3PPR8 Ribosome-binding factor A. FT Nitrobacter hamburgensis X14., evalue=2e-72, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0025 category=Unassigned, FT evalue=3e-63, 88.321168% identity hit'" FT /note="COGs: 'evalue=8e-20 score=89.5 category=J FT group=COG0858 Ribosome-binding factor A' " FT /note="InterPro IPR000238" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MPRHNKKDSTSGASQRQLRVAETVRHAIADILAQGHVHDPVLEGHLITVPEVRMSADLKLATIYVMPLGGRDTTDVIDAL FT DHNRKFLRGEIARRVNLKFAPDIRFRADERFDEAERIEKLLRTPAVQRDLAPDSDES* FT " FT gene 35047..35460 FT /locus_tag="Nham_0032" FT /colour=7 FT CDS 35466..36704 FT /locus_tag="Nham_0033" FT /product="tRNA pseudouridine synthase B" FT /EC_number="4.2.1.70" FT /note="TIGRFAM: tRNA pseudouridine synthase B: (2.8e-85)" FT /note="PRIAM: Pseudouridylate synthase" FT /note="PFAM: pseudouridylate synthase TruB-like: FT (1.5e-51)" FT /note="SPTR top hit: 'Q3PPR7 TRNA pseudouridine synthase B FT (EC 4.2.1.70). Nitrobacter hamburgensis X14., evalue=0.0, FT 99% identity hit'" FT /note="KEGG top hit: 'rpa:RPA0434 truB EC=4.2.1.70 FT category=Unassigned, evalue=1e-162, 85.207101% identity FT hit'" FT /note="COGs: 'evalue=7e-67 score=248 category=J FT group=COG0130 Pseudouridine synthase' " FT /note="InterPro IPR002501:IPR004510" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTTQNSAFDSPIAEPDAPEKNNSDRGNNFSDTPPHHEDGSLSRLQAETSGGGSERVEVEGFSSQTNQASAHPASEARHPP FT PRQAGEGRKKQNNQPRRDKRDVHGWVVLDKPVGMTSTHAVAVVKRLFSAKRAGHAGTLDPLASGGLPIALGEATKTVPFV FT MDGRKRYRFTVQWGEERDTDDTEGRVTATSESRPAADAVRALLPRFTGVIEQIPPQYSAIKIQGERAYDLARDGETVALQ FT PRPVEIHHFTLVEHTDDGRSLFEAECGKGTYVRALARDIGRILGCYGHISALRRTLVGPFDEADMIPLEELEALCNRAAS FT GEGSLADALLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPQSSGTVYVTVAGRLLALAELGHGELIPKRVFNLT FT GLTASSGRNERA* " FT gene 35466..36704 FT /locus_tag="Nham_0033" FT /colour=7 FT CDS 36707..36976 FT /locus_tag="Nham_0034" FT /product="ribosomal protein S15" FT /note="PFAM: ribosomal protein S15: (1.1e-30)" FT /note="SPTR top hit: 'Q3PPR6 Ribosomal protein S15, FT bacterial chloroplast and mitochondrial type. Nitrobacter FT hamburgensis X14., evalue=4e-43, 100% identity hit'" FT /note="KEGG top hit: 'rpa:RPA0433 rpsO FT category=Unassigned, evalue=1e-38, 89.887640% identity FT hit'" FT /note="COGs: 'evalue=7e-24 score=102 category=J FT group=COG0184 Ribosomal protein S15P/S13E' " FT /note="InterPro IPR000589:IPR005290" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MSITAERKAEVIKTNARKSGDTGSPEVQVAILSERIVNLTNHFKSHGKDNHSRRGLLKLVSTRRSLLDYVKKKDEARYRALLEKHNIRR*" FT gene 36707..36976 FT /locus_tag="Nham_0034" FT /colour=7 FT CDS 37219..39465 FT /locus_tag="Nham_0035" FT /product="Polyribonucleotide nucleotidyltransferase" FT /EC_number="2.7.7.8" FT /note="PRIAM: Polyribonucleotide nucleotidyltransferase" FT /note="PFAM: 3' exoribonuclease: (4.6e-46) RNA binding S1: FT (1.1e-22) KH, type 1: (3.9e-16)" FT /note="SMART: KH: (9.4e-15) " FT /note="SPTR top hit: 'Q3PPR5 Polyribonucleotide FT nucleotidyltransferase (EC 2.7.7.8). Nitrobacter FT hamburgensis X14., evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'bja:bll0779 pnpA EC=2.7.7.8 FT category=Unassigned, evalue=0.0, 91.250000% identity hit'" FT /note="COGs: 'evalue=0.0 score=997 category=J FT group=COG1185 Polyribonucleotide nucleotidyltransferase FT (polynucleotide phosphorylase)' " FT /note="InterPro IPR001247:IPR003029:IPR004087:IPR004088" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="LWPASGNLAHGFCVWRPCFCEPQKDNNKMFNKHSVEIDWGGRPLKLETGKIARQADGAVVATYGETVVLATVVAAKTPRE FT GVDFLPLTVDYQEKTYAAGRIPGGYFKREGRPSEKETLVSRLIDRPVRPLFADGWRNETQVIVTVLSHDMENDPDVLAMV FT AASAALTLSGAPFRGPIGAARVGFMNDEYVLNPTLDEMVDTQLELVVAGTADAVLMVESEAKELSEDIMLGAVMFGHRHF FT QPVINAIIELAEKAAKEPREVSQADDSALEKEMLGLIEGELRPAYAIADKQQRQNAVAAAKAKVIAHYFPEGQEPKYDKL FT RIAAVFKHLEAKIVRWNILDTGKRIDGRDAKTVRNILAEVGVLPRAHGSALFTRGETQAMVVTTLGTGEDEQYIDALSGT FT YKETFLLHYNFPPYSVGETGRLGSTKRREIGHGKLAWRAIHPVLPPHHEFPYTIRVVSEITESNGSSSMASVCGASLSLM FT DAGVPLKRPTAGIAMGLILEGSRYAVLSDILGDEDHLGDMDFKVAGTEVGISSLQMDIKIAGITEEIMKVALAQAREGRI FT HILGEMAKALTNARAELGEYAPRIETFKIPTDKIREVIGTGGKVIREIVEKTGAKINIEDDGTVKVASNDGEAMKAAIKW FT IKSIASDPEVGQIYEGTVVKVMEFGAFVNFFGAKDGLVHISQLAANRVQKSSDIVKEGDKVKVKLLGFDDRGKTRLSMKA FT VDQQTGEDLEAAGHKAEKADAPREAAGE* " FT gene 37219..39465 FT /locus_tag="Nham_0035" FT /colour=7 FT CDS complement(39679..40584) FT /locus_tag="Nham_0036" FT /product="transcriptional regulator, LysR family" FT /note="PFAM: regulatory protein, LysR: (2e-20) LysR, FT substrate-binding: (5.7e-43)" FT /note="SPTR top hit: 'Q3PPR3 Regulatory protein, FT LysR:LysR, substrate-binding. Nitrobacter hamburgensis FT X14., evalue=1e-166, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0029 lysR FT category=Unassigned, evalue=1e-155, 92.617450% identity FT hit'" FT /note="COGs: 'evalue=9e-31 score=127 category=K FT group=COG0583 Transcriptional regulator' " FT /note="InterPro IPR000847:IPR005119" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MVTLKQLRYLAALARHGHFGRAAEACAISQPALSMQIRELEQFLGVTLVERRPGEVMLTEIGREISRRAEDVLASARDLA FT DFARHRSRPLTGRLTLGIIPSLAPYLLPRMLPALQSQFPDLQLELRETQTRLLVEEVKGGALDAAMLALPLGEPDIDTME FT LFDDLFLLAVPASDPRPCERRVAARDIDQSRLILLEDGHCLRDQALAFCATIPRTPAPGSTGMTFGASSLATVMQMVAGG FT YGVTLIPQIAADVEARDDRIKVLRLEEPQPGRSIGLAFRRTSPRKADFAALGEVVKGCTKT* FT " FT gene complement(39679..40584) FT /locus_tag="Nham_0036" FT /colour=6 FT CDS 40839..43028 FT /locus_tag="Nham_0037" FT /product="catalase/peroxidase HPI" FT /EC_number="1.11.1.6" FT /note="TIGRFAM: catalase/peroxidase HPI: (0)" FT /note="PRIAM: Catalase" FT /note="PFAM: Haem peroxidase: (9.9e-117)" FT /note="SPTR top hit: 'Q3PPR2 Haem catalase/peroxidase (EC FT 1.11.1.6). Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0030 EC=1.11.1.6 FT category=Unassigned, evalue=0.0, 86.657497% identity hit'" FT /note="COGs: 'evalue=0.0 score=1197 category=P FT group=COG0376 Catalase (peroxidase I)' " FT /note="InterPro IPR000763:IPR002016" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MDAKTNDKSAGKCPFTSGRSHRIRDWWPGQLDVQVLHHNSNLSDPMDEDFDYAREFESLDLNAVIKDLTALMTDSQDWWP FT ADFGHYGGLMIRLAWHSAGTYRITDGRGGAGAGQQRFAPLNSWPDNVLLDRGRRLLWPIKQKYGRKISWADLLVLSGNVA FT LESMGFKTFGFAGGRADVWEPEELYWGPEGTWLGDERYSGERQLAEPLAAVQMGLIYVNPEGPNGKPDPIAAATDIRETF FT FRMAMNDEETVALIAGGHTFGKTHGAGDASLVGPAPESAPIEDQGLGWNSKFGTGKGGDSIGSGLEVTWTQTPTTWDNNF FT FDTLFKYEWELTKSPAGAYQWQAKDAPAITPDAHDTSKKHVPTMLTTDLSLRFDPAYGKISKHFHENPDQFADAFARAWY FT KLTHRDMGPRERYLGPLVPKETLIWQDPIPAVDHALVDDKDIAELKAKVLASGLTVPQLVSTAWASASTFRGSDKRGGAN FT GARIRLAPQKDWEVNQPAQLKTVLARLEAIQSEFNGAQTGGKKVSLADLIVLAGCFAVEKAANDVGIDLKVPFTPGRMDA FT SQDQTDVDSFAPLEPRADGFRNYIGSRHQFMTPEEALVDRAQLLNLTGPEMTVLVGGLRVLGANAADSRHGVFTKQPGTL FT TNDFFANLLTMDTVWQPVAGQDDVYEGRDRKTNAVQWTGTRVDLIFGSHSQLRAFAEVYACTDAKEKFARDFVAAWTKVM FT NADRFDLHR* " FT gene 40839..43028 FT /locus_tag="Nham_0037" FT /colour=9 FT CDS join(43211..43273,43277..43654) FT /locus_tag="Nham_0038" FT /product="GCN5-related N-acetyltransferase" FT /note="PFAM: GCN5-related N-acetyltransferase: (5.9e-07)" FT /note="SPTR top hit: 'Q3PPR1 GCN5-related FT N-acetyltransferase. Nitrobacter hamburgensis X14., FT evalue=4e-46, 100% identity hit'" FT /note="KEGG top hit: 'bja:bll0776 category=Unassigned, FT evalue=4e-29, 68.674699% identity hit'" FT /note="COGs: 'evalue=2e-05 score=40.8 category=R FT group=COG0456 Acetyltransferases' " FT /note="InterPro IPR000182" FT /transl_table=11 FT /evidence=not_experimental FT /colour=13 FT /pseudo FT /translation="MDICPARQDEYDNVARVWMESVSTGLAEASNFLLANLRARIAREIE FT GGWDLFVAKDGERLAAMLALQARDNYLDQLFVAPEYQGHGLGRRLLAFTRQRLPDEIWLR FT CVHENEKAWRWYEREGFVFEKESIEHGTDFMMKYYRWNKG" FT gene 43211..43654 FT /locus_tag="Nham_0038" FT /colour=13 FT /pseudo FT CDS 43662..44258 FT /locus_tag="Nham_0039" FT /product="glutathione S-transferase-like" FT /note="PFAM: glutathione S-transferase-like: (6.8e-18)" FT /note="SPTR top hit: 'Q3PPR0 Glutathione S-transferase, FT N-terminal. Nitrobacter hamburgensis X14., evalue=1e-111, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0031 EC=2.5.1.18 FT category=Unassigned, evalue=1e-100, 88.888889% identity FT hit'" FT /note="COGs: 'evalue=6e-28 score=117 category=O FT group=COG0625 Glutathione S-transferase' " FT /note="InterPro IPR004045" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MMKLYWSPRSRSFTALWLLEETGQPYERVLTDISTGAQKTPEFLAINPMGKVPALTDGNAATAEAAAICAYVAERFPDAK FT LAPPLGDARRAKYLQWLFFGPSCIEPAMIQIFTKLEVPSSTAAWGNATQVFDVLDKALEKGPWILGSDFSAADIVIGSAL FT YYAVRQFKMVPPRPTFDRYIDACMARAAFQRAETIAAG* " FT gene 43662..44258 FT /locus_tag="Nham_0039" FT /colour=9 FT CDS complement(44413..45261) FT /locus_tag="Nham_0040" FT /product="enoyl-(acyl carrier protein) reductase" FT /note="SPTR top hit: 'Q3PPQ9 Short-chain FT dehydrogenase/reductase SDR. Nitrobacter hamburgensis FT X14., evalue=1e-159, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0032 EC=1.3.1.9 FT category=Unassigned, evalue=1e-148, 94.584838% identity FT hit'" FT /note="COGs: 'evalue=1.0e-107 score=380 category=R FT group=COG0623 Enoyl-(acyl-carrier-protein)' " FT /note="InterPro IPR002347" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTESRMTHLMQGKRGLIMGVANDHSIAWGIAKTLAAHGAELAFTYQGEALAKRVRPLAESVGAHLVLPCDVEDIASVDKV FT FADIGKAWGKMDFLVHAIAFSDKSELNGRYADTTRGNFERTMLISCFAFTEAAKRAAALMPDGGSMLTLTYNGGDRAMPN FT YNVMGVAKAGLEASVRYLAVDFGEQNIRVNAISAGPIRTLAGAGIGDARFMFAFQQKHSPRRRGVSLDELGGAGLYLLSD FT LSGGVTGEIHFVDSGYNIIAMPQPDALRSDGLGNGTPNDAAK* " FT gene complement(44413..45261) FT /locus_tag="Nham_0040" FT /colour=11 FT CDS complement(45427..46650) FT /locus_tag="Nham_0041" FT /product="beta-ketoacyl synthase" FT /note="PFAM: beta-ketoacyl synthase: (7.8e-54)" FT /note="SPTR top hit: 'Q3PPQ8 Beta-ketoacyl synthase. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0033 EC=2.3.1.41 FT category=Unassigned, evalue=0.0, 96.314496% identity hit'" FT /note="COGs: 'evalue=1.0e-122 score=430 category=Q FT group=COG0304 3-oxoacyl-(acyl-carrier-protein) synthase' " FT /note="InterPro IPR000794" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRRVVVTGMGIVSSIGNNTQEVLSSLFEAKSGITRADKYAELGFRSQVQGAPTLNPADVIDRRAMRFLAEGAAWNHVAME FT QAIRDSGLEPTDISNERTGIIMGSGGPSARTIVEAADITRSKGPKRVGPFAVPKAMSSTASATLATWFKIKGVNYSISSA FT CATSNHCIGNAFETIQIGKQDIVFAGGCEELDWSLSVLFDAMGAMSSKYNDTPATASRAYDVSRDGFVIAGGAGVVVLEE FT LEHAKARGARIYGEVVGYGATSDGYDMVAPSGEGAERCMRMAMSTVKTKVDYINPHATSTPAGDPPEIEAIRKVFGTGEK FT CPPISATKSLTGHSLGATGVQEAIYSLLMMNNGFICESANITELDPAFADMPIVRKRIDNARVGTVMSNSFGFGGTNATL FT VFKRLDA* " FT gene complement(45427..46650) FT /locus_tag="Nham_0041" FT /colour=9 FT CDS complement(46736..47260) FT /locus_tag="Nham_0042" FT /product="beta-hydroxyacyl-(acyl-carrier-protein) FT dehydratase FabA" FT /EC_number="4.2.1.60" FT /note="TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) FT dehydratase FabA: (5.5e-104)" FT /note="PRIAM: 3-hydroxydecanoyl-[acyl-carrier protein] FT dehydratase" FT /note="PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) FT dehydratase, FabA/FabZ: (2.7e-72)" FT /note="SPTR top hit: 'Q3PPQ7 FT Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase FabA FT (EC 4.2.1.60). Nitrobacter hamburgensis X14., FT evalue=1e-100, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0034 EC=4.2.1.60 FT category=Unassigned, evalue=5e-94, 94.219653% identity FT hit'" FT /note="COGs: 'evalue=4e-34 score=137 category=I FT group=COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl FT carrier protein) dehydratases' " FT /note="InterPro IPR010083:IPR013114" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MQDRRSSYDYEGLLACGRGELFGPGNAQLPLPPMLMFDRITEITEDGGEFGKGLIRAELDVKSDLWFFGCHFKGDPVMPG FT CLGLDALWQMVGFYLGWTGGEGRGRALGLGDLKFSGQVLPHVRKVVYNVDIKRVMRSKLVLGIADGWLSTDGDIIYRAKD FT LKVGLFKQDAAPGT* " FT gene complement(46736..47260) FT /locus_tag="Nham_0042" FT /colour=5 FT CDS 48031..48528 FT /locus_tag="Nham_0043" FT /product="ferric uptake regulator, FUR family" FT /note="PFAM: ferric-uptake regulator: (3.2e-16)" FT /note="SPTR top hit: 'Q3PPQ6 Ferric-uptake regulator. FT Nitrobacter hamburgensis X14., evalue=3e-91, 99% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0035 category=Unassigned, FT evalue=3e-88, 95.151515% identity hit'" FT /note="COGs: 'evalue=3e-21 score=94.6 category=P FT group=COG0735 Fe2+/Zn2+ uptake regulation proteins' " FT /note="InterPro IPR002481" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VSTNENIVIVAEKDVDVAAIRHGRQPTLTGCPWHDVNEMLQSVGLRPTRQRMALGWLLFGKGARHLTAEMLYEEATIAKV FT PVSLATVYNTLNQLTDAGLLRQVSVDGTKTYFDTNVTAHHHFYLENNHELVDIPDPHLVLQKMPNVPEGYEISRIDMVVR FT LRKKR* " FT gene 48031..48528 FT /locus_tag="Nham_0043" FT /colour=9 FT CDS complement(48625..49182) FT /locus_tag="Nham_0044" FT /product="protein of unknown function DUF1058" FT /note="PFAM: protein of unknown function DUF1058: FT (1.9e-19)" FT /note="SPTR top hit: 'Q3PPQ5 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=1e-103, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0036 category=Unassigned, FT evalue=3e-82, 85.227273% identity hit'" FT /note="COGs: 'evalue=2e-45 score=175 category=S FT group=COG3807 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR010466" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MVGFRRGRVMMVKRLFASMVFAAAMLNAVGIEATANAKDSALSASGLPVPRYVSLKSDHVNVRAGPTKDNDVAWVYTKAG FT LPVEITAEFENWRRIRDSEGAEGWVYHSLLSGRRTAVVTMKHKDDLAQLYSSADTESAVAARLQAGVVAQVKHCAAGWCH FT VAGDGFDGWIQQQRLWGVYADEKIN* " FT gene complement(48625..49182) FT /locus_tag="Nham_0044" FT /colour=13 FT sig_peptide complement(49090..49182) FT /colour=11 FT /locus_tag="Nham_0044" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.982) with cleavage site probability 0.736 at FT residue 31" FT CDS 49669..50670 FT /locus_tag="Nham_0045" FT /product="Glycolate reductase" FT /EC_number="1.1.1.26" FT /note="PRIAM: Glycolate reductase" FT /note="PFAM: oxidoreductase-like: (0.003) D-isomer FT specific 2-hydroxyacid dehydrogenase, catalytic region: FT (2.5e-29) D-isomer specific 2-hydroxyacid dehydrogenase, FT NAD-binding: (4.3e-74)" FT /note="SPTR top hit: 'Q3PPQ4 Glycolate reductase (EC FT 1.1.1.26). Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0037 EC=1.1.1.26 FT category=Unassigned, evalue=1e-179, 93.093093% identity FT hit'" FT /note="COGs: 'evalue=6e-87 score=314 category=R FT group=COG1052 Lactate dehydrogenase and related FT dehydrogenases' " FT /note="InterPro IPR000683:IPR006139:IPR006140" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPVKKKPLVVVTRKLPDSIETRMRELFDARLNLDDQPMTPEQLMEAVRTADILVSTVTDEITGNVLKQPDCKVKLIAQFG FT NGVDNIDVVAAHERGITVTNTPNVLTEDTADMTMALILAVPRRFIEGAAMLTAGGDWPGWSPTWMLGRRLGGKRLGIIGM FT GRIGQAVARRARAFGLQIHYHNRKPVAPKIADELGATYWDSLDQMLARMDIISVNCPHTPATFHLLSARRLKLIRRDAYV FT VNTARGTVIDEDTLTRLIEAGEIAGAALDVFEHEPAVNPRLVRLAKAGKVVLLPHMGSATIEGRVEMGEKVIINIRTFLD FT AHKPPDRVLPNML* " FT gene 49669..50670 FT /locus_tag="Nham_0045" FT /colour=11 FT CDS complement(50818..51618) FT /locus_tag="Nham_0046" FT /product="UBA/THIF-type NAD/FAD binding fold" FT /note="PFAM: UBA/THIF-type NAD/FAD binding fold: (1.3e-64) FT MoeZ/MoeB: (1.6e-28)" FT /note="SPTR top hit: 'Q3PPQ3 UBA/THIF-type NAD/FAD binding FT fold:MoeZ/MoeB. Nitrobacter hamburgensis X14., FT evalue=1e-149, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0038 category=Unassigned, FT evalue=1e-142, 95.849057% identity hit'" FT /note="COGs: 'evalue=7e-69 score=254 category=H FT group=COG0476 Dinucleotide-utilizing enzymes involved in FT molybdopterin and thiamine biosynthesis family 2' " FT /note="InterPro IPR000205:IPR000594:IPR007901" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MLSADELERYARHIVMREVGGPGQNALRNARVLMIGAGGLGAPALMYLAAAGVGTLGVIDDDVVTLSNLQRQIIHATSDI FT GSPKVESAADKIRALNPHVAFRAHNMRLDAANAVALFADYDIVADGSDNFTTRYLVADACFLAKKPLVTAALGVFDGSLT FT TIRGHEKNADGEFNPTYRCLFPEPPPEGTVPSCQQAGILGALAGVLGSMTALEVIREIVGFGEGLVGRLLMVDARAMRFE FT TLNYRRDPSNPLNGDHPTIRDLSGYR* " FT gene complement(50818..51618) FT /locus_tag="Nham_0046" FT /colour=12 FT CDS 51840..53186 FT /locus_tag="Nham_0047" FT /product="Peptidoglycan-binding domain 1" FT /note="PFAM: Peptidoglycan-binding domain 1: (7.9e-09)" FT /note="SPTR top hit: 'Q3PPQ2 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0039 category=Unassigned, FT evalue=0.0, 74.776786% identity hit'" FT /note="COGs: 'evalue=0.003 score=37.1 category=O FT group=COG0265 Trypsin-like serine proteases typically FT periplasmic contain C-terminal PDZ domain' " FT /note="InterPro IPR002477" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRATIAAALMIVTTAIYAEAQPAGTNGRAGTKPSPPAHPAVQTPADTASAMTQAARQALQSDLAWTGHYNGIINGEVSDR FT LIAAIKAFQKDQGGKQTGVLNPQERGALASVARKSRSNVGWKTVSDASTGVRLGLPARLVPQRSSEGDDTKWSSSTGTIQ FT ILLTRRKDADLTTAKLAEHERKQPAGRKIAYSAIKPDVFVLSGTQGLKKFYTRGQLRGNEARILTVLYDQATEGTMEPVV FT IAMSSAFDPFPANGPPPRKIVEYATGVTVSRDGAILTGGDVTDGCKSIVVAGHGNADRIADDKDHGLALLRIYGAHGLQP FT IALDGGATKGGLALVGIADPQNQGGGAAVSQVKASVAQGADGGEPALSPAPALGFSGAAALDTNGKFAGLALLKPTDVAG FT LSGSAPAAQAVLAPVEAVQAFLKANKVTPASGSSNANAAVVRVICVRK* " FT sig_peptide 51840..51902 FT /colour=11 FT /locus_tag="Nham_0047" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.899 at FT residue 21" FT gene 51840..53186 FT /locus_tag="Nham_0047" FT /colour=13 FT CDS complement(53229..54110) FT /locus_tag="Nham_0048" FT /product="formamidopyrimidine-DNA glycosylase" FT /EC_number="3.2.2.23" FT /note="TIGRFAM: formamidopyrimidine-DNA glycosylase: FT (3.3e-101)" FT /note="PRIAM: DNA-formamidopyrimidine glycosylase" FT /note="PFAM: Formamidopyrimidine-DNA glycolase: (2.7e-34)" FT /note="SPTR top hit: 'Q3PPQ1 Formamidopyrimidine-DNA FT glycolase (EC 3.2.2.23). Nitrobacter hamburgensis X14., FT evalue=1e-168, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0040 EC=3.2.2.23 FT category=Unassigned, evalue=1e-148, 87.671233% identity FT hit'" FT /note="COGs: 'evalue=4e-88 score=317 category=L FT group=COG0266 Formamidopyrimidine-DNA glycosylase' " FT /note="InterPro IPR000191:IPR000214:IPR012319" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MPELPEVETVRRGLQPAMEGATIVRAETRRKDLRFPFQTDFVARLEGQTVTGLGRRAKYLLADLASGDVLLMHLGMSGSF FT RVIDAAGATAPGDCHHPRNEDRAHDHVSFTMSSGASVIFNDPRRFGYMKVIARTVLNDEPLLKGLGPEPLGNEFDAAMLA FT RACRDKKTSLKAALLDQRVVAGLGNIYVCEALFRAHLSPRRLAATLASKTGGPADRAGRLVEAIHDVLNQAIKAGGSSLR FT DHRQTTGELGYFQHSFRVYDREGEKCRTPTCRGTVKRFTQNGRSTFWCPVCQK* " FT gene complement(53229..54110) FT /locus_tag="Nham_0048" FT /colour=2 FT CDS 54202..54963 FT /locus_tag="Nham_0049" FT /product="ubiquinone/menaquinone biosynthesis FT methyltransferases" FT /note="TIGRFAM: ubiquinone/menaquinone biosynthesis FT methyltransferases: (4.1e-110)" FT /note="PFAM: UbiE/COQ5 methyltransferase: (3.3e-102) FT Methyltransferase type 11: (4.4e-23) Methyltransferase FT type 12: (1.8e-12)" FT /note="SPTR top hit: 'Q3PPQ0 Ubiquinone/menaquinone FT biosynthesis methyltransferase. Nitrobacter hamburgensis FT X14., evalue=1e-145, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0041 category=Unassigned, FT evalue=1e-131, 90.118577% identity hit'" FT /note="COGs: 'evalue=7e-78 score=283 category=H FT group=COG2226 Methylase involved in ubiquinone/menaquinone FT biosynthesis' " FT /note="InterPro FT IPR000051:IPR001601:IPR004033:IPR004034:IPR013216:IPR013217" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MDQPGDTTHFGFRDVPLGDKQTLVNGVFHNVAQRYDLMNDLMSAGLHRVWKDATITALNPPRNDTPFALLDVAGGTGDIA FT FRAAKAAGLGFRATVCDINPDMLAVGHERAIKQHLDHQVSFVEGNAETLAFADRSFDAYTIAFGIRNVPRIDSALREAFR FT VLKPGGRFLCLEFSTVDVPGLDKIYDLFSFKVIPPLGRAVTGDADSYQYLVESIRKFPKPNAFADMIRDAGFARVTWQVL FT SGGIVALHSGWRL* " FT gene 54202..54963 FT /locus_tag="Nham_0049" FT /colour=12 FT CDS 54972..56528 FT /locus_tag="Nham_0050" FT /product="2-polyprenylphenol 6-hydroxylase" FT /note="TIGRFAM: 2-polyprenylphenol 6-hydroxylase: FT (7.9e-206)" FT /note="PFAM: ABC-1: (4.3e-44)" FT /note="SPTR top hit: 'Q3PPP9 2-polyprenylphenol FT 6-hydroxylase. Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0042 category=Unassigned, FT evalue=0.0, 89.708738% identity hit'" FT /note="COGs: 'evalue=1.0e-121 score=428 category=R FT group=COG0661 unusual protein kinase' " FT /note="InterPro IPR000719:IPR004147:IPR010232" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="LTHAARLARAAFVFAREGVFGVVDPSLVPPPGQLALRMARLIERRGAKSGPRLTRALTRLGPAYLKLGQFLATRPDVIGV FT AMARDLESLQDRLPPFSQAEAEAVVAAALERPVAQAFASFGPSVAAASIAQVHRGEVEKGGVRKQVAVKVLRPNVASRFR FT RDLSDFFFVANKAEAHSAEARRLRLVEVINTMSRSVAMEMDLRLEAAALSEMAENTRDDPDFRVPTVDWDRTTHNVLTME FT WIEGIALNDHARLAQSQIDLPELGRNVIQSFLRHALRDGFFHADMHPGNLFVDDSGRLVAVDFGIMGRLGLKERRFLAEI FT LLGFITRDYRRVAEVHFEAGYVPGHHSVENFAQAIRAIGEPIHSRTAEEISMAKLLTLLLEVTGLFDMQTRPELILLQKT FT MVVVEGVARSFDPKLDIWTVADPVVREWITQNLGPLGRVQGALAGAGELGRLLGGLPALASRTVSLIEQFETMAREGLTL FT GPATIAEIKRAEARSHRWSILALWVIAAALVGLLWTTH* " FT gene 54972..56528 FT /locus_tag="Nham_0050" FT /colour=11 FT misc_feature 56463..56516 FT /colour=11 FT /locus_tag="Nham_0050" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 56591..58030 FT /locus_tag="Nham_0051" FT /product="phosphopantothenoylcysteine FT decarboxylase/phosphopantothenate--cysteine ligase" FT /EC_number="4.1.1.36" FT /EC_number="6.3.2.5" FT /note="TIGRFAM: phosphopantothenoylcysteine FT decarboxylase/phosphopantothenate--cysteine ligase: FT (1.6e-129)" FT /note="PRIAM: Phosphopantothenoylcysteine decarboxylase., FT Phosphopantothenate--cysteine ligase" FT /note="PFAM: flavoprotein: (6.7e-42) DNA/pantothenate FT metabolism flavoprotein-like: (1.4e-36)" FT /note="SPTR top hit: 'Q3PPP8 DNA/pantothenate metabolism FT flavoprotein (EC 4.1.1.36) (EC 6.3.2.5). Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0043 EC=4.1.1.36 6.3.2.5 FT category=Unassigned, evalue=0.0, 81.302521% identity hit'" FT /note="COGs: 'evalue=1.0e-101 score=364 category=H FT group=COG0452 Phosphopantothenoylcysteine FT synthetase/decarboxylase' " FT /note="InterPro IPR003382:IPR005252:IPR007085" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MASLTVRKLDDAIKAELRLRAARNGRSVEDEVRVILREAATVTSSTVATGNRAARNAAIPAGRNSFHQSNGLRNITLIIG FT GGIAAYKALDLIRRLKERGFIVRCVMTNAAQQFVTPLSAGALAGTHAYTDLFDPGSEFDAGHIRLARDCDLIVVAPATAD FT LMAKMAHGLASDLATAILLAADKPILLAPAMNPLMWNNPATRRNVAQLARDGVAMIGPNAGKMAEAGEAGVGRMAEPTEI FT ATAAARILGPARPQPLEGKRVLVTAGPTREPIDPVRYIANRSSGKQGFAIAAAAQAAGAEVTLISGPVDLDDPAGVTVAH FT VESAREMLAAVEAALPADIAIFTAAVADWRVAHEGAQKLKKTAAGMPPLQLVENPDILATISKLRDTRPPLVIGFAAETE FT HLIDNARAKFARKGCDWMVANDVSPGTGVMGGDRNTVHLLTRDGVGDEIKAESFPVMTKEDVAAMLIERIVSTVTDQPT* FT " FT gene 56591..58030 FT /locus_tag="Nham_0051" FT /colour=12 FT CDS 58027..58485 FT /locus_tag="Nham_0052" FT /product="deoxyuridine 5'-triphosphate nucleotidohydrolase FT (dut)" FT /EC_number="3.6.1.23" FT /note="TIGRFAM: deoxyuridine 5'-triphosphate FT nucleotidohydrolase (dut): (7.6e-78)" FT /note="PRIAM: dUTP diphosphatase" FT /note="PFAM: deoxyUTP pyrophosphatase: (5.6e-30)" FT /note="SPTR top hit: 'Q3PPP7 DeoxyUTP pyrophosphatase, FT subfamily 1 (EC 3.6.1.23). Nitrobacter hamburgensis X14., FT evalue=1e-79, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0044 EC=3.6.1.23 FT category=Unassigned, evalue=2e-66, 82.894737% identity FT hit'" FT /note="COGs: 'evalue=1e-46 score=179 category=F FT group=COG0756 dUTPase' " FT /note="InterPro IPR003232:IPR008180:IPR008181" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MSGAIRIDAQQLPHAEGLPLPAYHSSQAAGLDLMAAVPEQTPLVLAAGQYAMVPTGLIIALPDGFEAQVRPRSGLAAKHG FT VTVLNSPGTVDADYRGEINVLLVNLGNAPFTIRRGERIAQMIVAPVTRVELARAVSLSATSRGSGGFGSTGR* FT " FT gene 58027..58485 FT /locus_tag="Nham_0052" FT /colour=16 FT CDS 58867..61383 FT /locus_tag="Nham_0053" FT /product="PAS/PAC sensor signal transduction histidine FT kinase" FT /note="PFAM: ATP-binding region, ATPase-like: (4.7e-37) FT histidine kinase A-like: (1.6e-19)" FT /note="SMART: PAS: (0.0047) " FT /note="SPTR top hit: 'Q3PPP6 ATP-binding region, FT ATPase-like:Histidine kinase A, N-terminal precursor. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0045 category=Unassigned, FT evalue=0.0, 89.856802% identity hit'" FT /note="COGs: 'evalue=4e-40 score=160 category=T FT group=COG2205 Osmosensitive K+ channel histidine kinase' " FT /note="InterPro FT IPR000014:IPR003594:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MSDVVAVMRRTLLSCTSLVPGGIAGAGAACLVDISPAWATEPGLSERLIQTFTNLSRPDLTALALALGVLGFSVVAAILL FT MRTRIRAAANEQRLRTEIRELQSDADRFRALLFAEPQVLISWGAGEDRPQISGDIALLLPQDAKPPLRILAFGTWLPPEP FT ALQMDHAVDALRNAGEGFLLNLVTSAGRTVEAMGRAIGGQAIVRIRDLGGLRRDLAETTLRHNSLLAETGMLRAFAAAAP FT WPLWARGEDGNLNFANAAYARATEAASATDAIQRNLELLDSDDRIAMARALNDHAAFAARLPVVIGGERRMYDVHALRAA FT GGSAGIALDASETAALSQALERMADAHRRTLDQLSSGVAVFDGQRRLAFYNDSYRRLWDLDRAFLDGNPNDSSVLDRLRA FT ARKLPEQPDFRAWKARLHEAYRANEAAKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLELARRYDRLITVQRETLD FT SLTEAVAVFGSNGRAQLFNPAFARMWKLSPEALSQQPHIDTVEGWCKPLFDDDDAWQTIRNAVTGIDNRSAVRLKLERKD FT GSVLDCMTMPLPDGATMLTFHDITDSENVERALRERNDALETADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPL FT TEKQAQYIDYITSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAATEGIQDRLTRERIVLEVDVDPDIGNFIG FT DERRIIQVLYNLLANAAGFSPQGAVIAVSARRTAHSVSFAVTDDGPGIPPEVKDKVFDWFESRANGSRHRGAGLGLSLVR FT SFVELHGGRVHFDPTVKRGTRVVCDFPLDQTAHRNAAE* " FT sig_peptide 58867..58986 FT /colour=11 FT /locus_tag="Nham_0053" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.717) with cleavage site probability 0.507 at FT residue 40" FT gene 58867..61383 FT /locus_tag="Nham_0053" FT /colour=15 FT misc_feature 59044..59103 FT /colour=11 FT /locus_tag="Nham_0053" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 61380..62903 FT /locus_tag="Nham_0054" FT /product="protein of unknown function UPF0079" FT /note="PFAM: aminoglycoside phosphotransferase: (4.5e-23) FT protein of unknown function UPF0079: (1.6e-25)" FT /note="SPTR top hit: 'Q3PPP5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0046 category=Unassigned, FT evalue=0.0, 84.980237% identity hit'" FT /note="COGs: 'evalue=2e-87 score=316 category=R FT group=COG3178 phosphotransferase related to Ser/Thr FT protein kinases' " FT /note="InterPro IPR000194:IPR000909:IPR002575:IPR003442" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTGPSTFATALANETATAHLMADLALLIGPGDVITLSGDLGAGKTAAARAMIRYLAGDDTVEVPSPTFTLAQHYDLPCYP FT LLHADLYRINGPGELEEIGLAPLPDATVVLIEWPERAAGALPTDRIDIAISHRPALGSAARAAEITGYGNAAAQVARLAA FT LRRFLDDAGYLDATRQHMAGDASTRSYARLIRSDGRFILMNAPRRPDGPAIHDGKSYSAAVHLAEDVKPFVAIARGLRDH FT GFSAPAIHHADLESGFLITEDFGSAGFVEGTPPAPIAERYQVATDMLAALHCRTLPEILPVAPHIPYTIPVFDTEAMLVE FT VGLMLDWYLTDRGVEPSDDLRAEFMAMWRVLLAKLAAAPKTWVLRDFHSPNLIWLEQRRDTGKVGVIDFQDTVLGPAAYD FT LVSLLQDARVDVPESLELALLTRYMKARLGSGQPFDPAGFAELYAIMSAQRNTRLLGTFARLNRRDGKPHYLRHQPRIWT FT YLTRSLAHPALSAIRAWHQAHVPPPSD* " FT gene 61380..62903 FT /locus_tag="Nham_0054" FT /colour=11 FT CDS 63003..63323 FT /locus_tag="Nham_0055" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPP4 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-56, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0047 category=Unassigned, FT evalue=4e-52, 92.452830% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MGAERRKGERVTFERGYGAHMMGIDGTWRRNCTMEDVSETGAKLTVEGSIEGLHLKEFFLLLSSTGLAYRRCELAWVNGD FT QVGVNFLKQNDKKKKTGRRNDATADA* " FT gene 63003..63323 FT /locus_tag="Nham_0055" FT /colour=13 FT CDS 63590..64312 FT /locus_tag="Nham_0056" FT /product="Nucleotidyl transferase" FT /note="PFAM: Nucleotidyl transferase: (1.4e-10)" FT /note="SPTR top hit: 'Q3PPP3 Nucleotidyl transferase. FT Nitrobacter hamburgensis X14., evalue=1e-133, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0048 EC=2.7.7.13 FT category=Unassigned, evalue=1e-121, 89.539749% identity FT hit'" FT /note="COGs: 'evalue=5e-41 score=161 category=J FT group=COG1208 Nucleoside-diphosphate-sugar FT pyrophosphorylase involved in lipopolysaccharide FT biosynthesis/translation initiation factor 2B FT gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)' " FT /note="InterPro IPR005835" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MPVTPTKAMVLAAGLGLRMRPLTERMPKPMVPVAGKPLLDHVLDRLADAGISEAVVNVRYLPDQIIDHVARRSRPRVIIS FT DERDEVLGTGGAVVKALPLLGDAPFFHLNADTMWIDGARPNLTRMTEAFDPARMDILLLMAPTASSIGYGGSGDYAMLPD FT GALRRRKENQVVPFVYAGAAIMSPALFAGAPSGEFSLTTMFDRANERERLFGLRLDGVWMHVGTPDAVQAAEQAVLVSVA FT * " FT gene 63590..64312 FT /locus_tag="Nham_0056" FT /colour=7 FT CDS 64411..67560 FT /locus_tag="Nham_0057" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPP2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0049 category=Unassigned, FT evalue=0.0, 84.235518% identity hit'" FT /note="COGs: 'evalue=1.0e-101 score=363 category=L FT group=COG3893 Inactivated superfamily I helicase' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRVRNVPTSVPFLRTVITALVDGALIEGFRPRAQPERLAEATLYLPTRRAGRMARDIFLDVLNVDAVILPRIVALGDIDE FT DELAFAQAASSAEALQLPPALDGLARRLALAQLIEAWARQLKPGDPAQAPLVLGGPASTLALADDLARLMDDMATRGVDW FT RALDALVPDALDKYWQLTLDFLKIARDYWPAHLEEAGRIEPAVRRDRLIDAEAARLAAHHGGPVIAAGSTGSMPSTAKLL FT HVIARLPHGAVVLPGLDTDLDDEAWQLIGGMRDGNGAFTAPPAAGHPQFALHGLLRRFGIARRDVETLGVPAPYGREMLT FT SEAMRPSEATARWHTRLAEPEVAEKIAAGMKNLAVIAAANPEVEALSIAAAMREARELNKTAALVTFDRALARRVMAALG FT RWNLAFDDSGGDALMDTPAGIFARLVAGTACNGLEPPTLLALLKHPLCRLGRVAGGWSRAVATLELAILRGTRPPPGSKG FT LADEFARFCGELDKLDRGESSSLHRTEPRAALKLHRLDESRALIAALRDALAPLEGDGASRSADFTAFAAQHREAIDVLS FT RDDQGVAAAFEGQHGLALAAAFDDLRKAGERSGLTVKIADYPEVFETAFGDRIVRRPQATAASLRIYGPLEARLTQCDRV FT ILGGLNESVWPPAPPSDPWLSRPMRHELGLDLPERRIGLSAHDFAQLLGADDVILSHAAKAGGSPAVASRFLHRLKAVAG FT PERWATALQAGTRYVQYAEAIDRPEQVTPVAQPEPKPPRAARPTRLSVTAIEDWLRDPYTIYAKHILKLLPLEAVDMPLS FT AADRGSAIHNSLGDFTKQYPAALPENPADVLRAIGESRFAPLMQRPEARALWWPRFQRIAAWFAEWEQSRRPQLETIDAE FT IRGEISIPVASDRTFHLSARADRIEHLGDGRFTILDYKTGSPPSSKQVRLGLSPQLTLESAILREGGFEGIPAGASVSEL FT VYVRLSGNNPPGEPLQVNLDNGKTDMQSPDQAADRALEELNALIRAFDNEQQGYPSLDLPMWKTRYGAYDDLARIKEWSA FT AGGLGIEEW* " FT gene 64411..67560 FT /locus_tag="Nham_0057" FT /colour=13 FT CDS 67557..71045 FT /locus_tag="Nham_0058" FT /product="UvrD/REP helicase" FT /note="PFAM: UvrD/REP helicase: (3e-33)" FT /note="SPTR top hit: 'Q3PPP1 UvrD/REP helicase. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0050 category=Unassigned, FT evalue=0.0, 80.465503% identity hit'" FT /note="COGs: 'evalue=1.0e-154 score=541 category=L FT group=COG1074 ATP-dependent exoDNAse (exonuclease V) beta FT subunit (contains helicase and exonuclease domains)' " FT /note="InterPro IPR000212" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="VKAPRPVHPDASARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNGVDPARILCITFTKAAAANMSERVFSTLGHW FT VTLDDEALNAALRDTGIAQPDAWSRQRARKLFAAALETPGGLKVQTIHALCTRLLQQFPFEARVPARFSVLDERDQTGMM FT ERASISVMLDASQNPDSPAGRALQYAMGAAADTTLRDVVNQACLSRDHFMAWTEDRGIEQAISDVADALDVDPAERVEDV FT EREIVDGPNLPISEWEALAAILETGNKSDIEQARRLREAHAMIGEAAQADRYLDVFLTGDSVLRKSFVTKKISDVRPDIA FT AMLDRESQRVIALLERRRALTIRDRTQSLLVIATAVAANYRREKQERGLLDYDDLIDKTLAMLDQTSPGWVHYKLDRGVD FT HVLIDEAQDTSPKQWDIVERIIADFTTGEGAREGVRRTVFAVGDEKQSIFSFQGAAPREFDERRSKLERKFRDAELPFRK FT EDFIYSFRSGKTILESVDYVFRDAAIYTSIHAVGAHPVHESLADAAPGVVDLWSLEERDARQQIEGWRAPFDAVSATSSE FT VKLARRIRNEVKTLIAQGTMTGHLGDRRPLRYGDILVLVRRRGNAFDAIIQALKQSGIPVAGADRLKLTEHIAIIDLMNL FT ADALLLPRDDLALAVALKSPLFGLDDDDLFAIAHNRKGSLRDALADHATANDKFRDAFERLKMCETRAAHESPFAFYAWL FT LGGDGGRRRILRRLGHEANDALDEFLELALTYERKAPASQQGFMAWLRAADTDVKRDMEISRDEVRVMTVHGAKGLEASV FT VFLADTVTSPADTERLNLIRMSRGNAPAHAAGVTVWAGRKAEDPPDVVNARAAMIAETEHEYRRLLYVAMTRAADRLIVG FT GCKPGNRKDVREHAWYDLIDKGLGKSGLAMREIETAAGTVKRFTRPGETEPDAAGPATPVAAAPIALPPWLHSMAAPEAP FT AGPSLRPSDADDNAHHRIWPGESPDQRRRALLRGTLVHRLLQSLPDVPVDRRGDTALAYLGRNARDWSEAERDALAAQVL FT ALIGDSQFAPVFTDGSRAEVAIAGRLTTRRGDPVLVSGQIDRLVVTREAVLIVDFKTNHAPPRNPADAPPAYVRQLALYR FT AVLARLYPELPVKAALLWTETPEMMEISALALDAGLEAIISM* " FT gene 67557..71045 FT /locus_tag="Nham_0058" FT /colour=2 FT CDS 71144..71464 FT /locus_tag="Nham_0059" FT /product="thioredoxin" FT /note="TIGRFAM: thioredoxin: (7.1e-58)" FT /note="PFAM: thioredoxin-related: (2.4e-43)" FT /note="SPTR top hit: 'Q3PPP0 Thioredoxin. Nitrobacter FT hamburgensis X14., evalue=3e-55, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0051 EC=5.3.4.1 FT category=Unassigned, evalue=2e-53, 97.169811% identity FT hit'" FT /note="COGs: 'evalue=2e-23 score=100 category=O FT group=COG3118 Thioredoxin domain-containing protein' " FT /note="InterPro IPR005746:IPR006662:IPR006663" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MAVGKVSDANFEAEVLKATGPVVVDFWAEWCGPCRMIGPVLDEISGAMGDKVKIVKLNVDESPRTASKYGVMSIPTLMIF FT KGGELASRQVGAAPKQKLEQWITATV* " FT gene 71144..71464 FT /locus_tag="Nham_0059" FT /colour=9 FT CDS complement(71708..73036) FT /locus_tag="Nham_0060" FT /product="FolC bifunctional protein" FT /EC_number="6.3.2.17" FT /note="TIGRFAM: FolC bifunctional protein: (1.3e-138)" FT /note="PRIAM: Folylpolyglutamate synthase" FT /note="SPTR top hit: 'Q3PPN9 Folylpolyglutamate synthetase FT (EC 6.3.2.17). Nitrobacter hamburgensis X14., evalue=0.0, FT 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0052 EC=6.3.2.17 FT category=Unassigned, evalue=0.0, 87.330317% identity hit'" FT /note="COGs: 'evalue=1.0e-104 score=372 category=H FT group=COG0285 Folylpolyglutamate synthase' " FT /note="InterPro IPR001645" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="VSAALPQQTPLGDVVARISKLHPKKIDLTLDRMWRILGQLDHPERRLPPVIHVAGTNGKGSTVAYLRAILEAAGLRVHVF FT TSPYLVRLNECVRLAGTLVGDDDLRDALLECERVNGGEPLTQFEIKTAAAFLLFTKIPADALLLEVGLGGRLDSTNVVET FT PLASVITPIGIDHTEFLGDTLAQIAGEKAGIIKRGVPVISAEQMPEAQAVIEQRAKQMRGPLHAAGQDWHVSVEHGRLVY FT QDERGLLDLAAPRLFGRHQFDNAGLAIATLRAQDRFSIDTAAFERGVTGAEWPARMQRLTSGRLVDQAPRDAELWLDGGH FT NVDGGRVAAAALGDLEERVSRPLVVIAGMMGNKDAKGFLANFTGLTRHVIAVPIPDMENAMPPDVLADAVRALDMRAETA FT ADVKAALQSLARLAYEIPPRILIAGSLYLAGHVLAENGTQPS* " FT gene complement(71708..73036) FT /locus_tag="Nham_0060" FT /colour=12 FT CDS complement(73033..73977) FT /locus_tag="Nham_0061" FT /product="acetyl-CoA carboxylase, carboxyl transferase, FT beta subunit" FT /note="TIGRFAM: acetyl-CoA carboxylase, carboxyl FT transferase, beta subunit: (1.1e-129)" FT /note="SPTR top hit: 'Q3PPN8 Acetyl-CoA carboxylase FT carboxyl transferase, beta subunit. Nitrobacter FT hamburgensis X14., evalue=1e-179, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0053 EC=6.4.1.2 FT category=Unassigned, evalue=1e-161, 89.968652% identity FT hit'" FT /note="COGs: 'evalue=1.0e-113 score=403 category=I FT group=COG0777 Acetyl-CoA carboxylase beta subunit' " FT /note="InterPro IPR000438:IPR001202:IPR011762" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MNWLTNVVRPKIRNILKRETPENLWIKCPDTGQLVFYKDVESNQFVIPGSNYHMRMSADARLRSIFDNETWYDVALPEVT FT ADPLKFRDERKYVDRIKDARTKTGLHDSVKVGFGKLEGAGVVVAVQDFDFMGGSLGMAAGEAIVRGLELAVEKQCPFIVF FT AASGGARMQEGVLSLMQLPRTTVAVQMLREAGQPYIVVLTNPTTGGVTASYAMLGDVQIAEPGALIGFAGARVIEQTIRE FT KLPNGFQRAEYLRDHGMVDMVVHRHDLRPTLARLCRLLTKAPEIDAAPEPSPAAEEPAEPMPAPEAAAPSAPPA* FT " FT gene complement(73033..73977) FT /locus_tag="Nham_0061" FT /colour=5 FT CDS complement(74164..75000) FT /locus_tag="Nham_0062" FT /product="tryptophan synthase, alpha subunit" FT /EC_number="4.2.1.20" FT /note="TIGRFAM: tryptophan synthase, alpha subunit: FT (2.4e-76)" FT /note="PRIAM: Tryptophan synthase" FT /note="PFAM: tryptophan synthase, alpha chain: (6e-116)" FT /note="SPTR top hit: 'Q3PPN7 Tryptophan synthase, alpha FT chain (EC 4.2.1.20). Nitrobacter hamburgensis X14., FT evalue=1e-151, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0054 trpA EC=4.2.1.20 FT category=Unassigned, evalue=1e-137, 91.007194% identity FT hit'" FT /note="COGs: 'evalue=2e-84 score=305 category=E FT group=COG0159 Tryptophan synthase alpha chain' " FT /note="InterPro IPR002028" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="VTTRIDTRFAELKKQGRSAFVTFLMGGDPDPATSLAIIKALPKAGADIIEIGMPFTDPMADGPAVQAAGRRALNAGMTVT FT RTLQMIHDFRKGEGSTPVVLMGYYNPIYIYGVEKFLTDAKAAGVDGLIVVDLPPEEDSELCIPAMKAGLNFIRLATPTTD FT DKRLPAVLANTSGFVYYVSITGITGSAAADSTAVGAAVARIKRHTTLPVCVGFGIRTADAARGIAERSDGAVVGSALVDA FT LSGSLDAEGKATAKTVNAVADLAAALAAGVRSARQAAE* " FT gene complement(74164..75000) FT /locus_tag="Nham_0062" FT /colour=10 FT CDS complement(74997..76241) FT /locus_tag="Nham_0063" FT /product="tryptophan synthase, beta subunit" FT /EC_number="4.2.1.20" FT /note="TIGRFAM: tryptophan synthase, beta subunit: FT (6.2e-274)" FT /note="PRIAM: Tryptophan synthase" FT /note="PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta FT subunit: (3.9e-123)" FT /note="SPTR top hit: 'Q3PPN6 Tryptophan synthase, beta FT chain (EC 4.2.1.20). Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0055 EC=4.2.1.20 FT category=Unassigned, evalue=0.0, 93.719807% identity hit'" FT /note="COGs: 'evalue=0.0 score=687 category=E FT group=COG0133 Tryptophan synthase beta chain' " FT /note="InterPro IPR001926:IPR006653:IPR006654" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MNSLPNSFRSGPDARGHFGIFGGRFVAETLMPLILDLEKAYTEARADAAFQRDMAGYRKDYIGRPSPLYFAERLTEHLRD FT ISAASGRAGGAKVYLKREELNHTGSHKVNNVLGQILVARRMGKKRIIAETGAGQHGVATATLCARFGLECVVYMGAVDVA FT RQEPNVIRMEMLGAKVVPVQSGTRTLKDAMNEALRDWVTNVHNTFYCIGTVAGPHPYPMMVRDFQSIIGDETRAQMQEAE FT GRLPDSLIACIGGGSNAMGLFHPFLDDSSVEIFGVEAAGHGLDKLHAASLTGGRPGVLHGNRTYLLMNDDGQIQDAHSIS FT AGLDYPGIGPEHSWLHETGRVTYLSATDEEALSAFQLLSRLEGIIPALESAHAIARVVELAPERPKDHLMVVNLSGRGDK FT DVPQVGDILKGRRK* " FT gene complement(74997..76241) FT /locus_tag="Nham_0063" FT /colour=10 FT CDS complement(76389..77066) FT /locus_tag="Nham_0064" FT /product="Phosphoribosylanthranilate isomerase" FT /EC_number="5.3.1.24" FT /note="PRIAM: Phosphoribosylanthranilate isomerase" FT /note="PFAM: N-(5'phosphoribosyl)anthranilate isomerase FT (PRAI): (7.3e-46)" FT /note="SPTR top hit: 'Q3PPN5 Phosphoribosylanthranilate FT isomerase (EC 5.3.1.24). Nitrobacter hamburgensis X14., FT evalue=1e-123, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0056 EC=5.3.1.24 FT category=Unassigned, evalue=1e-103, 85.714286% identity FT hit'" FT /note="COGs: 'evalue=2e-52 score=198 category=E FT group=COG0135 Phosphoribosylanthranilate isomerase' " FT /note="InterPro IPR001240" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MSLIVKICGLSTPATLDVTLQGGADMVGFVFFPPSPRHLDLSRARELGAQVRGRAGKVALTVDADDATLGGIIEALRPDL FT LQLHGKETVARIREIKRTFGLPIMKAIGIETAGDLAALPGYAAVADRVLFDAHPPKDATRPGGLGVPFDWRLLENLAPGI FT PFMLSGGLTAGNVDAAVRTTRAGGVDVSSGVESAPGVKDAGMIGDFIRAARAAEINLREATSHVG* FT " FT gene complement(76389..77066) FT /locus_tag="Nham_0064" FT /colour=10 FT CDS complement(77344..77691) FT /locus_tag="Nham_0065" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPN4 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=8e-60, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0057 category=Unassigned, FT evalue=1e-48, 81.739130% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRKFLTGLVLIPLGVLFIVFAFANRHLVTVTFDPFDASDPLAGVTLPLFVLIIAVAIFGVVAGSVATWFGQRRWRHTARQ FT YETDAREARVELADLRSRWESRDTQRLPDLTRRAG* " FT gene complement(77344..77691) FT /locus_tag="Nham_0065" FT /colour=13 FT misc_feature complement(order(77494..77559,77605..77670)) FT /colour=11 FT /locus_tag="Nham_0065" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(77620..77691) FT /colour=11 FT /locus_tag="Nham_0065" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.994) with cleavage site probability 0.696 at FT residue 24" FT CDS complement(77777..78082) FT /locus_tag="Nham_0066" FT /product="integration host factor, beta subunit" FT /note="TIGRFAM: integration host factor, beta subunit: FT (4.3e-57)" FT /note="PFAM: histone-like DNA-binding protein: (3.2e-44)" FT /note="SPTR top hit: 'Q3PPN3 Integration host factor, beta FT subunit. Nitrobacter hamburgensis X14., evalue=2e-51, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0058 category=Unassigned, FT evalue=2e-50, 97.029703% identity hit'" FT /note="COGs: 'evalue=7e-27 score=112 category=L FT group=COG0776 Bacterial nucleoid DNA-binding protein' " FT /note="InterPro IPR000119:IPR005685" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKHRPARAGRNPRTGEHVPVDQKSVPFF FT KTGKEMRERLNRENATSEASA* " FT gene complement(77777..78082) FT /locus_tag="Nham_0066" FT /colour=2 FT CDS complement(78251..79228) FT /locus_tag="Nham_0067" FT /product="signal peptide peptidase SppA, 36K type" FT /note="TIGRFAM: signal peptide peptidase SppA, 36K type: FT (1.4e-60)" FT /note="PFAM: peptidase S49: (4.2e-46)" FT /note="SPTR top hit: 'Q3PPN2 Peptidase S49, SppA FT precursor. Nitrobacter hamburgensis X14., evalue=1e-179, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0059 sppA FT category=Unassigned, evalue=1e-156, 86.461538% identity FT hit'" FT /note="COGs: 'evalue=3e-51 score=196 category=U FT group=COG0616 Periplasmic serine proteases (ClpP class)' " FT /note="InterPro IPR002142:IPR004635" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSIESDVIVDRRRLRRKLTFWRVASVLIAIAAVVAVGAYATPWGRALTGASAIQRVNIEGLIRNDQNRVEALERLGKSNA FT PAVIVHINSPGGTTAGSEQLYDALMRLKAKKPMVVVVDGLCASGGYIAALASDHIIAQQTALVGSIGVLFQYPNFTDLLK FT TVGVKVEEVKSSPLKAAPNGFEPTSPEARAALDALVKDSYAWFRGLVQTRRGMDNGQLEKVADGRVFTGRQAVDLKLIDQ FT LGDEKAAIAWLVAEKKITPDLPVRDFKLSPRFGDMTFLRTAASVTFDALGLSSIARQVEQTGIVRAADRLGLDGMLALWQ FT PAPSN* " FT gene complement(78251..79228) FT /locus_tag="Nham_0067" FT /colour=9 FT misc_feature complement(79100..79165) FT /colour=11 FT /locus_tag="Nham_0067" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(79106..79228) FT /colour=11 FT /locus_tag="Nham_0067" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.993) with cleavage site probability 0.910 at FT residue 41" FT CDS complement(79411..80151) FT /locus_tag="Nham_0068" FT /product="protein of unknown function DUF540" FT /note="PFAM: protein of unknown function DUF540: FT (2.2e-15)" FT /note="SPTR top hit: 'Q3PPN1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-134, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0060 category=Unassigned, FT evalue=1e-120, 88.617886% identity hit'" FT /note="COGs: 'evalue=3e-26 score=112 category=E FT group=COG2981 Uncharacterized protein involved in cysteine FT biosynthesis' " FT /note="InterPro IPR007496" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MIGAAVKALAQILSPPMRAILWRVIGLALVLIAVSAVGLQRLLSWLAGSGELWAETVLGPTFHTPLNILAWIVSIAAGFG FT IVFGAVFLMPTISSLVAGVFVDDVGEIVEREHYPAEHSGAPLPFGLAMTEGVKTALLTLLVYLIALPFVFVAGAGFIAFF FT IATAWLLGREYFELAAMRFRSPAEAKAMRRDNASTVFLGGLIIAAFVAIPIVNLATPLFGMAFMVHMHKRLSGPRPELIA FT PDRRSR* " FT gene complement(79411..80151) FT /locus_tag="Nham_0068" FT /colour=10 FT misc_feature complement(order(79492..79557,79669..79734,79882..79947,80023..80088)) FT /colour=11 FT /locus_tag="Nham_0068" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(80250..80744) FT /locus_tag="Nham_0069" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPN0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=6e-91, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0061 category=Unassigned, FT evalue=5e-82, 93.710692% identity hit'" FT /note="COGs: 'evalue=4e-12 score=64.5 category=O FT group=COG1225 Peroxiredoxin' " FT /note="InterPro IPR011594" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTGADVPAPELAVSQWFNTGEPLTLAALRGRPVLLHAFQMLCPGCVAHGTPQTQRAFELFKATDLQVIGLHTVFEHHAAM FT TPVSLQAFIHEYGLTFPIGVDAAGEGTPLPVTMSRYRMQGTPTSILIGRDGRIVHHGFGQQSDMALGAMIAAELAGAQTY FT AAKA* " FT gene complement(80250..80744) FT /locus_tag="Nham_0069" FT /colour=13 FT CDS complement(80741..81676) FT /locus_tag="Nham_0070" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPM9 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0062 category=Unassigned, FT evalue=1e-140, 84.429066% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MGLVLDTVGKWIAAYLQKEVRGYEPFTPSDPEHLRDTIREGDVLLIEGNSRISGIIKYLTQSTWSHSALYVGPVDGAVEP FT DGEPHVLIEADIGEGVTSAPLSKYFPYHTRLCRPVGLSHEDRVTVCRYAINRIGFGYDTKNIVDLMRYLIPLPVPQRWRR FT RMIAFGSGDPTKIICSALIAQAFEAVRYPILPKITRAGSRKARREILHIRDSSLYMPRDFDISPYFEIVKPTIERGFDYL FT SLHWADRQKPLAEGAGVFGPFQAEGLSPPSVPASHDAAPAPVEEVSAIERAAVAEHQLRVERAPQPVRGNP* FT " FT gene complement(80741..81676) FT /locus_tag="Nham_0070" FT /colour=13 FT CDS 81788..83302 FT /locus_tag="Nham_0071" FT /product="Twin-arginine translocation pathway signal" FT /note="TIGRFAM: Twin-arginine translocation pathway FT signal: (0.032)" FT /note="PFAM: amine oxidase: (1.7e-21)" FT /note="SPTR top hit: 'Q3PPM8 Twin-arginine translocation FT pathway signal. Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0063 category=Unassigned, FT evalue=0.0, 79.791667% identity hit'" FT /note="COGs: 'evalue=2e-19 score=90.8 category=E FT group=COG1231 Monoamine oxidase' " FT /note="InterPro IPR000205:IPR002937:IPR003042:IPR006311" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MRVAAGASMRQVRESFLHFQCFGNHAMRMTRRDFLSASAAFATGIGIGRARTAPLPREADVVVIGAGAAGIAAARRIQAA FT NRKVIMIEAADRIGGRCHTDMKTFGTPFDRGARWLYDPDTNPMAGLARSAGTGVFAAPPGQKIRIGRRNARAGETEQFLA FT ALVRAKRAIGEAAHGRTDVACASVLPGDLDVWTGTIDFVLGAGATGKDLKDLSAMDRARAAERNAAIGCKQGLGALLAAL FT GQSLPTSLLTPASRVSWAGRDIGVETPAGRISARAVIVTVSTNVLTSGNIRFTPELPKRQLDAAARLSLGSYDRVALWLP FT DNPLGLGRNETMIEQSSDGKTALLAANASGSSLCTIDVAGSFGRDLSAQGEGAMVAFATEWLAKLFGSDAAAAVKRSAAT FT RWNAAPHVLGAMSAAEPGGQPSRKVLMEPLGSLFLAGEAAHETLWGTVGGAWESGERAADAALRKVGATKEPAQPSASTR FT KPSRHHRRAPSRRSQDAYGFPLPR* " FT gene 81788..83302 FT /locus_tag="Nham_0071" FT /colour=10 FT CDS 83299..83970 FT /locus_tag="Nham_0072" FT /product="protein of unknown function DUF71, ATP-binding FT region" FT /note="PFAM: protein of unknown function DUF71, FT ATP-binding region: (2.3e-10)" FT /note="SPTR top hit: 'Q3PPM7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-125, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0064 category=Unassigned, FT evalue=3e-92, 77.927928% identity hit'" FT /note="COGs: 'evalue=4e-31 score=128 category=R FT group=COG2102 ATPases of PP-loop superfamily' " FT /note="InterPro IPR002761" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MMRPRALISWSSGKDSAFALHEVRRAGAFDVVGALTTVNETFGRVSIHGVREEVLCAQLAAAGLPAWRVPIPYPCSNEVY FT EARMGAAMADAMRDNITHIIFGDLFLTDVRAYREQKLAGTGIAPVFPLWGRPTAALACEMIASGLETRLVSVDRAKLDLS FT FAGRSFDRTLLADLPAGIDPCGENGEFHTCVTAAPVFSQPIEVASGEVVERDGFAYCDLLLAE* FT " FT gene 83299..83970 FT /locus_tag="Nham_0072" FT /colour=11 FT CDS complement(84211..86664) FT /locus_tag="Nham_0073" FT /product="phenylalanyl-tRNA synthetase, beta subunit" FT /note="TIGRFAM: phenylalanyl-tRNA synthetase, beta FT subunit: (1.4e-215)" FT /note="PFAM: t-RNA-binding region: (1e-26) ferredoxin-fold FT anticodon-binding: (1.8e-30) B3/4: (2.5e-92) tRNA FT synthetase, B5: (3.9e-15)" FT /note="SPTR top hit: 'Q3PPM6 Phenylalanyl-tRNA synthetase, FT beta subunit. Nitrobacter hamburgensis X14., evalue=0.0, FT 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0065 pheT EC=6.1.1.20 FT category=Unassigned, evalue=0.0, 88.984088% identity hit'" FT /note="COGs: 'evalue=1.0e-163 score=567 category=J FT group=COG0072 Phenylalanyl-tRNA synthetase beta subunit' " FT /note="InterPro FT IPR002547:IPR004532:IPR005121:IPR005146:IPR005147" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="VKFTLSWLKEHLDTDEPLDKLADKLTMIGLEVEHIDDKAKALAPFTIARVISAAQHPNADRLRVCMVDTGETDDKGGPAP FT IQVVCGAPNAREGLVSVFAPPGTHIPGKDITLGVGTIRGVESRGMLCSAAELEISDNHDGILELPDDAPVGAGYAEWAGL FT GDPVIEINLTPNRQDCTGVHGIARDLSAADMGRFKDPTIKPVKGEFPCPVKVTVEDAALCPGFALRLVRGVTNGPSPEWL FT QKRLTSIGLRPINALVDITNFMTYDRARPLHVFDANKVQGNLTVRRARDGETLLALDGRTYTLDPSICVIADDKGVESLA FT GIMGGEQSGCDETTTDVLIESALWSEINIAQTGRKLGINSDARYRFERGVDPAFMVPGLEMATRLVMELCGGTPSDTVVA FT GQALPDDRVIDFPLTETRRLAAIDVPLVEMRRILSHLGFMVAGNGPVVKVAIPTWRTDVTGKADIVEEIVRIVGVDKVPM FT TPFDRGDAPRKPVLTPIQSRTRRGRRALAVRGMVEAVTWSFIAKPQAELFGGGAKELALANPIASDLSDMRPSLLPGLVA FT IAQANADRGFPDVALFEVGQIFRGDGPQDQFMAAAGIRRGVASSAGIGRHWSGSATADGLDANTFDVKADALAVLAAAGA FT PVQALQIAAGSESKNFPAWLHPGRSAAIQIGPQNVLGYFGELHPRVLEALRADGSLLAFEVILDRIPEGKQKPTRAKPVL FT ELPAFQPVSRDFAFIVDRCVKAADIVRAAQGVDRKLVSGVTVFDIYEGKGIEANKKSVAIAVTLQPRDKTLTDQEIEAVA FT AKVVAEVAKRTGGSLRG* " FT gene complement(84211..86664) FT /locus_tag="Nham_0073" FT /colour=7 FT CDS complement(86661..87767) FT /locus_tag="Nham_0074" FT /product="phenylalanyl-tRNA synthetase, alpha subunit" FT /EC_number="6.1.1.20" FT /note="TIGRFAM: phenylalanyl-tRNA synthetase, alpha FT subunit: (1.3e-107)" FT /note="PRIAM: Phenylalanine--tRNA ligase" FT /note="PFAM: phenylalanyl-tRNA synthetase, class IIc: FT (1.7e-154) aminoacyl tRNA synthetase, class II-like: FT (8e-31)" FT /note="SPTR top hit: 'Q3PPM5 Phenylalanyl-tRNA synthetase, FT alpha subunit (EC 6.1.1.20). Nitrobacter hamburgensis FT X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0066 EC=6.1.1.20 FT category=Unassigned, evalue=0.0, 92.663043% identity hit'" FT /note="COGs: 'evalue=1.0e-123 score=436 category=J FT group=COG0016 Phenylalanyl-tRNA synthetase alpha subunit' FT " FT /note="InterPro IPR002319:IPR004188:IPR004529:IPR006195" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MSDLEQLQSQILADIASASDEAALEAVRVATLGKKGSISALLSTLGKMSPDERKSEGAKINLAKDTVTQALAARREVLKA FT LALDARLASETIDVTLPLRESPAEAGRIHPLSQVWDEVTTIFADMGFAVAEGPDIETDDYNFTRLNFPEGHPAREMHDTF FT YFNPKEAAGSEAGEKPSRLLLRTHTSPVQVRTMLSQKPPIRVICPGRTYRSDSDQTHTPMFHQVEGLVIDKSSHLGHLKW FT ILHEFCKAFFEVDNVNMRFRPSFFPFTEPSLEVDIQCRRDKNEIRFGEGEDWLEILGCGMVHPNVLKLCGLDPEVYQGFA FT WGMGIDRIAMLKYGIADLRQLFEGDVRWLNHYGFRPLEVPTLAGGLSS* " FT gene complement(86661..87767) FT /locus_tag="Nham_0074" FT /colour=7 FT CDS complement(87949..88308) FT /locus_tag="Nham_0075" FT /product="ribosomal protein L20" FT /note="TIGRFAM: ribosomal protein L20: (7.3e-59)" FT /note="SPTR top hit: 'Q3PPM4 Ribosomal protein L20, FT bacterial and organelle form. Nitrobacter hamburgensis FT X14., evalue=3e-60, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0067 category=Unassigned, FT evalue=6e-59, 97.478992% identity hit'" FT /note="COGs: 'evalue=2e-35 score=141 category=J FT group=COG0292 Ribosomal protein L20' " FT /note="InterPro IPR005812:IPR005813" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MARVKRGVTAHAKHKKVYKITKGFSGRRKNTIRAAKAAADKAGQYAFRDRKRKKRTFRALWIQRLNAAVRPFGMTYSVFI FT NGLSKSGITVDRKVLSDLAINEPAAFQAIAEKAKAALAA* " FT gene complement(87949..88308) FT /locus_tag="Nham_0075" FT /colour=7 FT CDS complement(88378..88578) FT /locus_tag="Nham_0076" FT /product="ribosomal protein L35" FT /note="PFAM: ribosomal protein L35: (2.7e-15)" FT /note="SPTR top hit: 'Q3PPM3 Ribosomal protein L35. FT Nitrobacter hamburgensis X14., evalue=4e-31, 100% identity FT hit'" FT /note="KEGG top hit: 'rpa:RPA0039 rpmI FT category=Unassigned, evalue=5e-28, 90.909091% identity FT hit'" FT /note="COGs: 'evalue=6e-10 score=55.6 category=J FT group=COG0291 Ribosomal protein L35' " FT /note="InterPro IPR001706" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPKLKTKSGAKKRFKVTGTGKVVSAHAGKRHGMIKRTKKQIRQLRGTRILFKTDGDNIKKYFLPNA*" FT gene complement(88378..88578) FT /locus_tag="Nham_0076" FT /colour=11 FT CDS complement(88906..89421) FT /locus_tag="Nham_0077" FT /product="translation initiation factor IF-3" FT /note="TIGRFAM: translation initiation factor IF-3: FT (2.1e-58)" FT /note="PFAM: initiation factor 3: (2.2e-43)" FT /note="SPTR top hit: 'Q3PPM2 Initiation factor 3. FT Nitrobacter hamburgensis X14., evalue=3e-92, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0069 category=Unassigned, FT evalue=3e-90, 97.076023% identity hit'" FT /note="COGs: 'evalue=2e-57 score=215 category=J FT group=COG0290 Translation initiation factor 3 (IF-3)' " FT /note="InterPro IPR001288" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MPVAKDGPRTNDEIRNAQVQLIDQEGTNQGTVETISAIKMAMDAGMDLVEIAPNSSPPVCKIMDYGKYKFQAQKKAAEAR FT KRQKIVEIKEIKLRPMIDDHDYNVKMKAMQRFFEEGDKVKITLRYRGREMAHQDIGTKLLDKVKTDVAAYAKVEQDARFE FT GRQVVMVLAPR* " FT gene complement(88906..89421) FT /locus_tag="Nham_0077" FT /colour=7 FT CDS 89676..90449 FT /locus_tag="Nham_0078" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPM1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-147, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0070 category=Unassigned, FT evalue=1e-129, 88.326848% identity hit'" FT /note="COGs: 'evalue=2e-08 score=53.1 category=R FT group=COG0596 hydrolases or acyltransferases (alpha/beta FT hydrolase superfamily)' " FT /note="InterPro IPR000379" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTNGTAAQFIEVGGGNAMRRIAVRARDGNSPGLFWLGGFRSDMAGTKALALDAWAAERGRACVRFDYSGHGESAGAFTDG FT TIGRWLEESLAVFDAFCEGPQVVIGSSMGGWIALLLARALARREAPRAPLAGLVLIAPAPDFTEELMWKGFSPEARSAIE FT TEGVWLRPSDYGDPYPITRNLIEDGRRHLLLGGSITTGCPVRILQGAQDLDVPWRHAFALTERLPSDDVVLTMIRDGDHR FT LSRPQDIARILAAVAEF* " FT gene 89676..90449 FT /locus_tag="Nham_0078" FT /colour=13 FT CDS complement(90511..92751) FT /locus_tag="Nham_0079" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPM0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0071 category=Unassigned, FT evalue=0.0, 73.190349% identity hit'" FT /note="COGs: 'evalue=9e-22 score=99.4 category=S FT group=COG3673 Uncharacterized conserved protein' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MGRKIVLLSDGTGNSAAKVWRTNVWRTFEAIDLSGADQVAFYDDGVGTSSFKPLAILGGAFGFGLKRNVIDIYKFACRNW FT RDDSDELFGFGFSRGGFTIRVVMGLILNQGLVAADSEAELSRKAKAAYRQYRRERFHTVWHIEDIFRGIRDLFLRKGYDK FT RDNRRVDHIRFIGVWDTVAAYGLPLDEMTRGVSKWIWPLELPNHTLDCTRVRRACQALSLDEPRTTFHPELWDERGAPPL FT APRDDGNRHLADEQISQVWFAGVHSNVGGGYPDDALAFIPLVWMLRQAGACGLRLKSDRATPPADPDPLKNAISMCDKDG FT RLYDPRKGLGSYYRYGPRKLAELCDFRFSRNDEVVVARPKVHVSAFKRIASRSQDYAPVGLPKIYDVVTDDGLVLTPDQY FT GFESSARALARTETQEHVWNEIWKRRLVYFATVGSTAWLLLYPLARSLPAADEYTSPIRWVSDIIRIVGGFLPGFAQTWI FT NAYARSPGQFLVLLALAGGLTFWGTRLATRISDSMNAIWQRTPTAPTGLPTNWIYRLRASGPYIWFHRQLKRRWAPTFFA FT GLFVYLGITLGSHLIYNVQDVAGWTCNESPKVRGLARGEQATFDFSTSHFCAGTGIAVDGFGARYLVQVETTTPWQDGDI FT PSPLGGFYTTDAPRWSQRVWLMLGVPLRRELTRPWFRLVLRYGTTGGEEVFLDPDPEDGKVETMIRPTRSGELFIFVNDA FT VLGIPGLYDVFYRNNEGSAKLVVTRK* " FT gene complement(90511..92751) FT /locus_tag="Nham_0079" FT /colour=13 FT misc_feature complement(91024..91089) FT /colour=11 FT /locus_tag="Nham_0079" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(93054..94781) FT /locus_tag="Nham_0080" FT /product="putative PAS/PAC sensor protein" FT /note="PFAM: PAS: (0.0049)" FT /note="SMART: PAC motif: (0.002) " FT /note="SPTR top hit: 'Q3PPL9 PAS. Nitrobacter hamburgensis FT X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0072 category=Unassigned, FT evalue=0.0, 74.782609% identity hit'" FT /note="COGs: 'evalue=6e-13 score=69.6 category=T FT group=COG2202 FOG: PAS/PAC domain' " FT /note="InterPro IPR000014:IPR000700:IPR001610" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MFFFKKWSIAKENAAKTAAISKSQAVIEFRLDGTVITANENFLNILGYGLADVQGKHHSMFVEADERSSAAYRDFWARLN FT QGESQSAEYKRIDRDGEEVWVQASYLPVLDARGKPTKVIEIASDITAKKIEALDHAGQVSAIERTQAVVEFNLDGTIITA FT NKNFLNALGYALGEVQGKHDRMFVEPSERAGAAYREFWAKLNQGQAQSAECKRIGKAGNEVWIQATYNPIADENGKPFKV FT VTFATDVTSQKLKMANLESQITAIGKSQAVVEFGMDGKVITANDNSLKTFGYSLAKEVQGKHHSMFVEAGERASTAYRDF FT WARLNRGESQSAEYKRIGKDGKEIWVQASYNPVLDSKGKPTKVIQLATDITARKIEALDNAGQLAAIDRAQAVAAFNLDG FT TIIAANDKYLKAMGYTLGEVRGKHDGMFVEPSERAGAAYRDFWARLNRGESQSAEHKRIGKDGKEVWIQASYTPILDLNG FT KPIKVVEYATVIESVADGSEEGSLSIQEAPVSVANQAADDITSESVGPSLSMRRLEASRKNASAGPSLFSNLLANLRDGL FT SNAMVSSARAVTNFL* " FT gene complement(93054..94781) FT /locus_tag="Nham_0080" FT /colour=15 FT tRNA complement(95235..95309) FT /locus_tag="Nham_R0001" FT /gene="tRNA-Gly3" FT /note="anticodon GCC, Cove Score=86.85" FT /product="tRNA_Gly" FT /colour=8 FT CDS 95549..96481 FT /locus_tag="Nham_0081" FT /product="thioredoxin-related" FT /note="PFAM: glutaredoxin: (0.0018) thioredoxin-related: FT (9.9e-22)" FT /note="SPTR top hit: 'Q3PPL8 Thioredoxin-related. FT Nitrobacter hamburgensis X14., evalue=1e-173, 99% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0073 category=Unassigned, FT evalue=1e-144, 84.244373% identity hit'" FT /note="COGs: 'evalue=2e-68 score=252 category=O FT group=COG3118 Thioredoxin domain-containing protein' " FT /note="InterPro IPR002109:IPR006662:IPR006663" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VSIVEQGSGPPPQASNLIRETTAQTFMNDVVEESMRQPVLVDFWAPWCGPCRQLTPILEKAVLAGGGKVKLVKMNIDQHP FT AIFQQLAAQIGNQSIPAVFAFTGGRPVDYFTGAAPESQVNAFIDKLTQGMAAPGAPNIEEILQEAEAALVAGDPATAASI FT YAEVVGFDAANLPAIAGLARCYATTGALDKAKQTLALVPESKRGDAAVATVQAMIDLAEQASSLGPVADLERKVAENPLD FT HQARFDLATALNASGNRNDATGHLLEIVKRDRKWNDDAARKQLVQFFEAWGAADEATVEGRKRLSTILFS* FT " FT gene 95549..96481 FT /locus_tag="Nham_0081" FT /colour=9 FT CDS 96539..97213 FT /locus_tag="Nham_0082" FT /product="peptidase S16, lon-like" FT /note="PFAM: peptidase S16, lon-like: (3e-07)" FT /note="SPTR top hit: 'Q3PPL7 Peptidase S16, lon FT N-terminal. Nitrobacter hamburgensis X14., evalue=1e-125, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0074 EC=3.4.21.53 FT category=Unassigned, evalue=1e-116, 92.410714% identity FT hit'" FT /note="COGs: 'evalue=2e-49 score=188 category=R FT group=COG2802 Uncharacterized protein similar to the FT N-terminal domain of Lon protease' " FT /note="InterPro IPR003111" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPINADYRGPGDLPEVIPVFPLPGALLLPRGQMPLNIFEMRYLAMVDDAFRDGHRLIGMIQPDITNSASEDRPKLFGVGC FT VGRITQFAESGDGRYILELTGVSRFRVAEELTVLTPYRQCKVDFFAYADDLTARKGEDAVDRERLLAVLTDFLKVNELKV FT DWEGIETAPNEALVNALAMMSPYGPPEKQAMLEAPDLKTRAEILIAVTEMDLAKKRTSGDPGLQ* FT " FT gene 96539..97213 FT /locus_tag="Nham_0082" FT /colour=11 FT CDS 97255..97452 FT /locus_tag="Nham_0083" FT /product="protein of unknown function DUF343" FT /note="PFAM: protein of unknown function DUF343: FT (5.7e-23)" FT /note="SPTR top hit: 'Q3PPL6 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=5e-30, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0075 category=Unassigned, FT evalue=2e-25, 89.393939% identity hit'" FT /note="COGs: 'evalue=1e-15 score=74.5 category=S FT group=COG2835 Uncharacterized conserved protein' " FT /note="InterPro IPR005651" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTTPSDRPEDTVDRKLLEILVCPVTKGPLEFDGARQELISRSAKLAYPIREGIPIMLPEEARKIE*" FT gene 97255..97452 FT /locus_tag="Nham_0083" FT /colour=13 FT CDS complement(97735..99084) FT /locus_tag="Nham_0084" FT /product="ammonium transporter" FT /note="TIGRFAM: ammonium transporter: (7.6e-193)" FT /note="PFAM: Rh-like protein/ammonium transporter: FT (2.6e-155)" FT /note="SPTR top hit: 'Q3PPL5 Ammonium transporter FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'mag:amb0014 category=Unassigned, FT evalue=1e-164, 68.109339% identity hit'" FT /note="COGs: 'evalue=1.0e-118 score=420 category=P FT group=COG0004 Ammonia permease' " FT /note="InterPro IPR001905:IPR010256" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRFERPARAGLAIAAILGAAGLAGFADTALAQTAVAVAPAATSPPKIDSGDTAWMLTATALVLMMTIPGLALFYGGMVRK FT KNVLATVMQSFAIACLVSVLWMVIGYSWAFTEGTNFLGGASRMLLMGMGTDSIAAAAPTIPESVFMCFQMTFAIITPALI FT CGAIADRMKFSAMMWFMGLWSLLVYAPIAHWVWGGGFLGGLGVLDFAGGTVVHINAGVAGLVCALVLGKRKGYGSENMAP FT HNLVLTVIGASLLWVGWFGFNAGSAVTAGGQAGMAMAVTQIATAAAALAWMAVEWGLRGQPSVLGICSGAVAGLVAITPA FT SGFVDPTGALVIGAAAGVGCYWGATGLKHMMGYDDSLDAFGVHGVGGIIGALLTGVFARTAINKAGTGLIDGNAHQVVIQ FT IYGILATVVYDAIVTLIILLAIKAVIGLRVSGENEREGLDITQHGEVVQ* " FT gene complement(97735..99084) FT /locus_tag="Nham_0084" FT /colour=9 FT misc_feature complement(order(97828..97893,97939..98004,98044..98100,98113..98178,98194..98259,98305..98361,98401..98457,98503..98568,98590..98655,98770..98835,98857..98922,98992..99057)) FT /colour=11 FT /locus_tag="Nham_0084" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(99004..99084) FT /colour=11 FT /locus_tag="Nham_0084" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.603 at FT residue 27" FT CDS complement(99122..99460) FT /locus_tag="Nham_0085" FT /product="nitrogen regulatory protein P-II (GlnB, GlnK)" FT /note="PFAM: nitrogen regulatory protein P-II: (1.7e-69)" FT /note="SPTR top hit: 'Q3PPL4 Nitrogen regulatory protein FT P-II. Nitrobacter hamburgensis X14., evalue=5e-56, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:blr0612 glnK FT category=Unassigned, evalue=9e-49, 86.607143% identity FT hit'" FT /note="COGs: 'evalue=4e-38 score=149 category=E FT group=COG0347 Nitrogen regulatory protein PII' " FT /note="InterPro IPR002187:IPR002332" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MKIVMAIIKPFKLEEVRDALTAIGVHGMTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKVKIEVAVNSGQVDTVIEAIASA FT ARTGRIGDGKIFVINLEHAVRIRTGDLDADAI* " FT gene complement(99122..99460) FT /locus_tag="Nham_0085" FT /colour=10 FT CDS complement(99872..100210) FT /locus_tag="Nham_0086" FT /product="nitrogen regulatory protein P-II (GlnB, GlnK)" FT /note="PFAM: nitrogen regulatory protein P-II: (1.2e-66)" FT /note="SPTR top hit: 'Q3PPL3 Nitrogen regulatory protein FT P-II. Nitrobacter hamburgensis X14., evalue=2e-56, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0076 category=Unassigned, FT evalue=8e-53, 91.964286% identity hit'" FT /note="COGs: 'evalue=7e-39 score=152 category=E FT group=COG0347 Nitrogen regulatory protein PII' " FT /note="InterPro IPR002187:IPR002332" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MKLVVAIIKPFKLDEVRQALTAVGAHGMTVTEVKGYGRQKGHTEIYRGAEYVVNFLPKLRIEVAVASELADKTVEVITAA FT ARTGQIGDGKIFVMPIDHALRIRTGETDNDAL* " FT gene complement(99872..100210) FT /locus_tag="Nham_0086" FT /colour=10 FT CDS complement(100358..101218) FT /locus_tag="Nham_0087" FT /product="acyl-CoA thioesterase II" FT /EC_number="3.1.2.2" FT /note="TIGRFAM: acyl-CoA thioesterase II: (6.6e-93)" FT /note="PRIAM: Palmitoyl-CoA hydrolase" FT /note="PFAM: acyl-CoA thioesterase: (1.4e-43)" FT /note="SPTR top hit: 'Q3PPL2 Acyl-CoA thioesterase (EC FT 3.1.2.2). Nitrobacter hamburgensis X14., evalue=1e-166, FT 100% identity hit'" FT /note="KEGG top hit: 'bja:blr0604 tesB EC=3.1.2.- FT category=Unassigned, evalue=1e-149, 89.510490% identity FT hit'" FT /note="COGs: 'evalue=1.0e-100 score=359 category=I FT group=COG1946 Acyl-CoA thioesterase' " FT /note="InterPro IPR003703" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MSKSLIDLISILDLEPIEENLFRGNSPKTSWQRVFGGQVIGQAMVAACRTVEGRLPHSLHCYFILPGDPAIPIIYEVERL FT RDGKSYSTRRVTAIQHGHAIFSTMVSFHAPEQGAFDHQDRMPDVPPPEKLTPEEFAKQPMFKEMPDFIRRYYESDRPIEL FT RPVELNRYFGERIDDGRTHVWIRTAAKLPDDPALHMCALAYASDFSLLDAVMARYGRTLFDKRMMAASLDHAMWFHRPFR FT ADEWLLYAQDSPSARDGRALARGLIFRRDGTLVASVVQEGAVRERR* " FT gene complement(100358..101218) FT /locus_tag="Nham_0087" FT /colour=5 FT CDS 101377..102597 FT /locus_tag="Nham_0088" FT /product="Ubiquinone biosynthesis hydroxylase, FT UbiH/UbiF/VisC/COQ6 family" FT /note="TIGRFAM: Ubiquinone biosynthesis hydroxylase, FT UbiH/UbiF/VisC/COQ6 family: (3.7e-144)" FT /note="PFAM: monooxygenase, FAD-binding: (2.4e-10)" FT /note="SPTR top hit: 'Q3PPL1 Ubiquinone biosynthesis FT hydroxylase, UbiH/UbiF/VisC/COQ6 precursor. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0079 category=Unassigned, FT evalue=0.0, 90.886700% identity hit'" FT /note="COGs: 'evalue=3e-66 score=246 category=C FT group=COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and FT related FAD-dependent oxidoreductases' " FT /note="InterPro IPR002938:IPR003042:IPR010971" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MTTQRSIVICGGGFAGLALALALRQGLGAGVPIVVADPALANRSSRDPRATAIVAACRRLFEALGVWDEVAGTAQPILDM FT VITDSRLEDATRPVFLTFAGDVEPGEPFAHMIENGHLIEALVSRASAEGVDLRATAVTGSDLRSGGVMVSLADGATIDAS FT LLVAADGARSRLRERAGIATHGWEYDQSGIVVTVGHERDHQGRAEEHFLPAGPFAILPLTGRRSSLVWTEKRADAARIVA FT LAEEDFHAALEQRFGLHLGEIKALDKPRAFPLHYFVARSFIAERLALVGDAAHVIHPIAGQGLNLGLKDVAALAETVVDA FT VRLGIDPGQADVLERYQRWRRFDTVAMGFATNTLNVLFSNESTLLRGVRDIGLGLVDRMPPLKNAFIRQAAGLTGEVPRL FT LKGEAL* " FT sig_peptide 101377..101439 FT /colour=11 FT /locus_tag="Nham_0088" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.970) with cleavage site probability 0.543 at FT residue 21" FT gene 101377..102597 FT /locus_tag="Nham_0088" FT /colour=3 FT misc_feature 101395..101448 FT /colour=11 FT /locus_tag="Nham_0088" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 102806..104077 FT /locus_tag="Nham_0089" FT /product="aminotransferase, class I and II" FT /note="PFAM: aminotransferase, class I and II: (1.1e-38)" FT /note="SPTR top hit: 'Q3PPL0 Aminotransferase, class I and FT II. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0082 EC=2.6.1.1 FT category=Unassigned, evalue=0.0, 83.687943% identity hit'" FT /note="COGs: 'evalue=3e-64 score=239 category=E FT group=COG0436 Aspartate/tyrosine/aromatic FT aminotransferase' " FT /note="InterPro IPR001176:IPR004838:IPR004839" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MATTASSRAAQGAASPTEFAASPAESAASRAASTTACERSPFARTAELLAPYQPGQPPITLSVGEPQHPPPDFVAPILSQ FT HINEFRRYPIARGIEPFRHAAANWLSRRFALPRAVDPETEILVLNGSREGLFLAAIAAVRYVATRKGVPAILVPNPFYPA FT YGAGARAAHCETIFLPTTRANGFLPDLDALDEATLARTVAIYLASPANPQGAVASSDYFTRLIALARRHGFLVFSDECYS FT EIYTQAPPGSALECAGPDYANVVAFQSLSKRSNLPGIRVGFAAGDRNFLAAFHELRNVAAPQVPVPLQHVAVAAYGDEAH FT VEENRRLYRIKFDLADRILGHRYGYARPAGGFCVWLDVSAHGGDEAAAVKLYKEAGVRVVPGSYLARPQADGSNPGAGYI FT RLALVPDTETTAEALHRLVKTLG* " FT gene 102806..104077 FT /locus_tag="Nham_0089" FT /colour=10 FT CDS 104090..106597 FT /locus_tag="Nham_0090" FT /product="cell divisionFtsK/SpoIIIE" FT /note="PFAM: cell divisionFtsK/SpoIIIE: (2.6e-74)" FT /note="SMART: ATPase: (2.6e-06) " FT /note="SPTR top hit: 'Q3PPK9 Cell divisionFtsK/SpoIIIE FT protein. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0083 ftsK, spoIIIE FT category=Unassigned, evalue=0.0, 88.888889% identity hit'" FT /note="COGs: 'evalue=1.0e-143 score=503 category=D FT group=COG1674 DNA segregation ATPase FtsK/SpoIIIE and FT related proteins' " FT /note="InterPro IPR002543:IPR003593" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSMAAIERLLPIVDHLPPSIRDPLARRLRELTGLGLIGLSGSAAAALMTWSVQDPSLSHATSRAIHNVLGYPGAIGADLL FT MQILGLGAIMLILPVAIWGWRMLTHRPFDREATRLACWILCTSAAAGFASCWPHNGAWPLPTGLGGVVGDALVRAPAILF FT GPASVLQRIVFGAIFLAVMAATFLWAGGMGSRPRDESAGIDDDDAPFDDGGDHASVSLGWAVHALMSAKARFKRLRLGAL FT LTLAYKSLVSSAPRKTAALAFERHEPNLSGGPTAPSLVPAHGGIDDEDADADTDTDTDTDTDDEDTEDDDAPVVRAPRRK FT AAPRQPAKKSGKFDLPSVNVLSAPRAADRQPLSKSELEANSRALEGVLGDFGVRGEILKANPGPVVTLYELEPAPGIKSS FT RVIGLADDIARSMSALSARVAVVAGRNAIGIELPNAHREKVYLRELLTAKEASETVAKLPLCLGKNIGGESIIVDLARMP FT HLLIAGTTGSGKSVAINTMILSLLYRLRPDQCRLIMVDPKMLELSVYDGIPHLLTPVVTDPKKAVVALKWAVREMEERYK FT KMSKLGVRNIDGYNQRLVESRGKGEELTRTVHTGFDKETGKAIYEEEKLDLEPLPYIVIIVDEMADLMMVAGKDIEGAVQ FT RLAQMARAAGLHVILATQRPSVDVITGTIKANFPTRISFQVTSKIDSRTILGEMGAEQLLGQGDMLYMAGGGRISRVHGP FT FVSDEEVEKVVRHLKTQGQPEYLEAVTAEEPTDEDGAVFDGTSMGSDGGGDLFSQAVAIVKRDRKASTSYIQRRLQIGYN FT RAASLMERMELEGIVGQPNHAGKREILIEEEEGQF* " FT gene 104090..106597 FT /locus_tag="Nham_0090" FT /colour=9 FT misc_feature order(104180..104248,104321..104389,104579..104647) FT /colour=11 FT /locus_tag="Nham_0090" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 106840..107859 FT /locus_tag="Nham_0091" FT /product="outer membrane lipoprotein carrier protein LolA" FT /note="PFAM: outer membrane lipoprotein carrier protein FT LolA: (3.9e-54)" FT /note="SPTR top hit: 'Q3PPK8 Similar to Outer membrane FT lipoprotein-sorting protein. Nitrobacter hamburgensis FT X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0084 lolA FT category=Unassigned, evalue=1e-115, 82.283465% identity FT hit'" FT /note="COGs: 'evalue=1e-28 score=120 category=M FT group=COG2834 Outer membrane lipoprotein-sorting protein' FT " FT /note="InterPro IPR004564" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MILVWFGFRSSLDGLARGMSELLNHHTSAAAISVRPRPGKSDIRGGAKRCKRTASDGQDETLSRHVTHSSAARRPIRIRA FT RPGRVWLAAALTASLLVPPALAQAIPIPRPAPKARDVAPVAKLLDTVEPEVTGTTQPPDPIIPDRRRNVPANIFATFSAD FT QKAAAARVSAYLSSLRTLAGNFVQVGPDGSRSTGEFYIQKPGKVRFEYDPPSPIAMISDGSSLVVRDTKLATQDIYPLSQ FT TPLRYLLSDRIDLMKDTNVVSVTSDDLYISVTIEEKQALIGTSRLMLMVGAKDGKLKQWTVTDPQGYDTTVAIYNLNTTA FT KLDPALFKIDYTRYPTSNN* " FT gene 106840..107859 FT /locus_tag="Nham_0091" FT /colour=9 FT CDS 107936..108817 FT /locus_tag="Nham_0092" FT /product="exodeoxyribonuclease III (xth)" FT /note="TIGRFAM: exodeoxyribonuclease III (xth): (2.7e-36)" FT /note="PFAM: Endonuclease/exonuclease/phosphatase: FT (2e-41)" FT /note="SPTR top hit: 'Q3PPK7 Exodeoxyribonuclease III xth. FT Nitrobacter hamburgensis X14., evalue=1e-174, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0085 EC=3.1.11.2 FT category=Unassigned, evalue=1e-151, 92.988930% identity FT hit'" FT /note="COGs: 'evalue=5e-67 score=248 category=L FT group=COG0708 Exonuclease III' " FT /note="InterPro IPR000097:IPR004808:IPR005135" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MDTRVKPAYDGKQTCRRLRQKSMQITLTTWNVNSVRLRIDLVAKFLKAQRPDVLCLQETKCPDDAFPLKRFRRLGYEHVA FT LNGQKGYHGVAVVSKLPFDASNIRTFCDKIDSRHVGVTLGGEAGLAAPLVLHNFYVPAGGDIPDPALNPKFAHKLQFLDE FT MKACTPLHPRDGDRHVLVGDLNVAPHEHDVWSHKQLLKIVSHTPVECEKLLGLQSHGNWVDIARARIPMSEKVYTWWSYR FT AADWVAANRGRRLDHIWVSEALRGGIRDFRITRAARGWERPSDHVPVTAVIEV* " FT gene 107936..108817 FT /locus_tag="Nham_0092" FT /colour=2 FT CDS complement(108887..109336) FT /locus_tag="Nham_0093" FT /product="cyclic nucleotide-binding domain (cNMP-BD) FT protein" FT /note="PFAM: cyclic nucleotide-binding: (1.4e-22)" FT /note="SPTR top hit: 'Q3PPK6 Cyclic nucleotide-binding. FT Nitrobacter hamburgensis X14., evalue=1e-75, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0086 category=Unassigned, FT evalue=2e-67, 91.216216% identity hit'" FT /note="COGs: 'evalue=1e-14 score=72.6 category=T FT group=COG0664 cAMP-binding proteins - catabolite gene FT activator and regulatory subunit of cAMP-dependent protein FT kinases' " FT /note="InterPro IPR000595" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MSIDDDVVLLERVPTLRLLGAEALRVLAIGAEQQQFARGSILFRAGDEADAGYVVQEGGFRIHVEDGRDREVVAERGTLI FT GELALIVPMSRPATATALEYSMAIRIPRTLFLRVLDSDPAAARRLRDELANRTRQTTGDILMASAKLSG* FT " FT gene complement(108887..109336) FT /locus_tag="Nham_0093" FT /colour=15 FT CDS complement(109421..110107) FT /locus_tag="Nham_0094" FT /product="two component transcriptional regulator, winged FT helix family" FT /note="PFAM: response regulator receiver: (2.8e-35) FT transcriptional regulatory protein-like: (7.7e-19)" FT /note="SPTR top hit: 'Q3PPK5 Response regulator FT receiver:Transcriptional regulatory protein, C- terminal. FT Nitrobacter hamburgensis X14., evalue=1e-124, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:bll0620 category=Unassigned, FT evalue=1e-121, 97.368421% identity hit'" FT /note="COGs: 'evalue=1e-47 score=183 category=K FT group=COG0745 Response regulators consisting of a FT CheY-like receiver domain and a winged-helix DNA-binding FT domain' " FT /note="InterPro IPR001789:IPR001867" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MANARKILIVDDDTDLRDTLVEQLSLHEEFEASAVDTGAKGASAAKAHSPDLVLMDVGLPDTDGREVVRSLRKGGFKAPI FT IMLTGHDTDSDTILGLESGANDYIAKPFRFAVLLARIRAQLRQHEASEDAVFSVGHYSFRPGSKMLTTATAKKVRLTEKE FT TAILRFLYRAGQMPVSRETLLQEVWGYNSGVTTHTLETHIYRLRQKIEKDAANPEILVTEAGGYKLVP* FT " FT gene complement(109421..110107) FT /locus_tag="Nham_0094" FT /colour=6 FT CDS 110256..110897 FT /locus_tag="Nham_0095" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPK4 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-125, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0088 category=Unassigned, FT evalue=9e-93, 86.315789% identity hit'" FT /note="COGs: 'evalue=6e-38 score=150 category=S FT group=COG3786 Uncharacterized protein conserved in FT bacteria' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MNVPVVTCRTDVSAAEWARPPHSMQNSGFSTSCTTHSRDRPLAAIHVRAAAGRPERGWLIAEGRAFPVALGRGGIRANKR FT EGDGGTPRGIFRPIRLWWRPDRHPRPRTFLPVRPITPTDAWCEDPADRHYNRPIRLTRDASGDRLTRDDHLYDFIIEIDH FT NTRPRIAGRGSAVFLHLARDNFGPTAGCVAMTRSAMLRLLLRRIGPRTKIVIG* " FT gene 110256..110897 FT /locus_tag="Nham_0095" FT /colour=13 FT CDS complement(111017..111694) FT /locus_tag="Nham_0096" FT /product="Protein of unknown function UPF0001" FT /note="TIGRFAM: Protein of unknown function UPF0001: FT (1.6e-36)" FT /note="PFAM: alanine racemase-like: (2.3e-15)" FT /note="SPTR top hit: 'Q3PPK3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-123, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0089 category=Unassigned, FT evalue=1e-104, 85.777778% identity hit'" FT /note="COGs: 'evalue=2e-68 score=252 category=R FT group=COG0325 enzyme with a TIM-barrel fold' " FT /note="InterPro IPR001608:IPR011078" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTTDNAAPATSGLASVEAEIVRACRDARCERSSVTLVAVSKTFDTDAIAPVIAAGQQVFGENRVQEAQRKWPELMAAHPG FT IALHLIGPLQSNKAKDAVGLFDAIHSVDRPSICAALAKEIASQNRRPDLFVQINTGEEPQKAGVAPSDADAFIAACRDTY FT GLTISGLMCIPPADDAPAPHFALTAKIAKRNGLTQLSMGMSADFAIAIALGATHVRVGSAIFGTR* FT " FT gene complement(111017..111694) FT /locus_tag="Nham_0096" FT /colour=11 FT CDS complement(111728..112432) FT /locus_tag="Nham_0097" FT /product="glutathione S-transferase-like" FT /note="PFAM: glutathione S-transferase-like: (9.6e-18)" FT /note="SPTR top hit: 'Q3PPK2 Glutathione S-transferase, FT N-terminal:Glutathione S-transferase, C- terminal. FT Nitrobacter hamburgensis X14., evalue=1e-137, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0090 EC=2.5.1.18 FT category=Unassigned, evalue=1e-115, 83.261803% identity FT hit'" FT /note="COGs: 'evalue=5e-38 score=151 category=O FT group=COG0625 Glutathione S-transferase' " FT /note="InterPro IPR004045:IPR004046" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MADLSAFPITRRWPAADPGRLQLYSLPTPNGVKVSIMLEETALPYEPHLVDFGKDDQKTPEFLSLNPNGKIPAIVDPDGP FT GGKPFGLFESGAILQYLAEKTGQFLPADPARRWQTIQWLHFQMGGVGPMFGQVGFFNKFAGKKFEDKRPRDRYVAESKRL FT LGVMDGHLANRQWFVGDDYTIADIAMFGWVRNLIGFYEAREIVGFDRFGNVADWLERGLARPAVQRGLGIPARG* FT " FT gene complement(111728..112432) FT /locus_tag="Nham_0097" FT /colour=9 FT CDS 112586..115222 FT /locus_tag="Nham_0098" FT /product="leucyl-tRNA synthetase" FT /note="TIGRFAM: leucyl-tRNA synthetase: (0)" FT /note="PFAM: aminoacyl-tRNA synthetase, class Ia: FT (5.6e-136)" FT /note="SPTR top hit: 'Q3PPK1 Leucyl-tRNA synthetase FT bacterial/mitochondrial, class Ia. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0091 leuS EC=6.1.1.4 FT category=Unassigned, evalue=0.0, 89.467724% identity hit'" FT /note="COGs: 'evalue=0.0 score=979 category=J FT group=COG0495 Leucyl-tRNA synthetase' " FT /note="InterPro IPR001412:IPR002300:IPR002302" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTSDRYNARDAEPRWQAAWDQQAIFATKNDDPREKYYVLEMFPYPSGRIHIGHVRNYTLGDVIARYMRAKGYNVLHPMGW FT DAFGLPAENAAIERKVAPKAWTYDNIKAMKKQLRSIGLSLDWAREFATCDPSYYKHQQKMFLDFLRAGLAEREKRKINWD FT PVDMTVLANEQVIDGRGWRSGAVVEQREMNQWVFKITKYSQELLEALDTLDRWPDKVRLMQRNWIGRSEGLLLRFALDPA FT TTPNGEGELKIFTTRPDTLFGAKFMAIAPDHPLAQAAAKDNPALAEFIAECKRRGTAQAEIDTAEKMGFDTGIRAIHPFD FT PDWTLPVYVANFILMEYGTGAIFGCPAHDQRDLDFVNKYGLGNTPVVCPEGQDPKTLVITDTAYDGDGRMINSRFLDGMT FT AEAAKKEVAKRLESEMRGNMPVGERKVNFRLRDWGISRQRYWGCPIPVIHCPKCDVVPVPENDLPVTLPEDVTFDKPGNA FT LDHHPTWKHVTCPQCGARATRETDTMDTFVDSSWYFARFTDPWNETAPTTPEIANRMMPVDQYIGGVEHAILHLLYSRFF FT TRAMKATGHLSMDEPFKGMFTQGMVVHETYRKADGGWASPDEVGIEAVGNGRRATLISTGEPVEIGAVEKMSKSKRNTVD FT PDDIIGSYGADTARWFMLSDSPPDRDVIWSEEGVQGASRFMQRLWRLVNESAEAGKAAPRDKPATFGTDALALRKAAHGA FT LDKVSTGIERLHFNVCLANIREFANTLAETLARFGTRTSDLAPDIAWSLREAATILVQLFSPMMPHLSEECWHALGHTGL FT VSEARWPQIERDLLVEDTVTLPVQVNGKKRGEVTVASSAPNPEIETAVLALDAVRQALGGKPARKIIIVPQRIVNVVG* FT " FT gene 112586..115222 FT /locus_tag="Nham_0098" FT /colour=7 FT CDS 115209..115793 FT /locus_tag="Nham_0099" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPK0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-106, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0092 category=Unassigned, FT evalue=1e-88, 84.536082% identity hit'" FT /note="COGs: 'evalue=4e-12 score=65.0 category=S FT group=COG5468 secreted (periplasmic) protein' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MWWGRLSARPARSWLSPRIAARLGVVAVLAALTAGCFRPMYAEHADGSPALRDKLMGVELLPVDKPNASRDARIGVAIRN FT ALAFKLYGGATGAPPTHQLKIRFTTSRSSLMLDPRTALPSNESYGIDASYQLIEVATGKTVLSASTFARTSYDIPGQLQR FT FARARAYRDAEDRAAQEIADNINTRLASFFYAGT* " FT gene 115209..115793 FT /locus_tag="Nham_0099" FT /colour=13 FT misc_feature 115266..115334 FT /colour=11 FT /locus_tag="Nham_0099" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 115805..116833 FT /locus_tag="Nham_0100" FT /product="DNA polymerase III, delta subunit" FT /note="TIGRFAM: DNA polymerase III, delta subunit: FT (2.1e-45)" FT /note="PFAM: DNA polymerase III, delta: (2.7e-06)" FT /note="SPTR top hit: 'Q3PPJ9 DNA polymerase III, delta. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0093 category=Unassigned, FT evalue=1e-159, 85.380117% identity hit'" FT /note="COGs: 'evalue=3e-39 score=156 category=L FT group=COG1466 DNA polymerase III delta subunit' " FT /note="InterPro IPR005790:IPR010372" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MVALRGKDVDSFLARPDPGRPIILLYGPDAGLVRERADALMASAVDDPSDPFSLVRLDGDDLATEPSRLVDEAMTVPLFG FT GRRAIRVKAGTRNFAGGIETLADSAIQDCRIVIEAGELRPEAPLRKACERAKNAVAIACYPDTERDLARLIDDELRLSNL FT KIAPDARATLMSLLGGDRQASRNELRKIALYAHGQREIALDDVMAVVSDASDFKLDPIVDAAFAGQPAVVETEFAKAMVA FT GTYPGLVILAAQRQVAALHKAALAMEGGASASSAAESGFPRLHFSRKTAVETALRNFSAARLLQVMDQLAVAALEARKQT FT VLAPVIAQRALMSIAVNARRRG* " FT gene 115805..116833 FT /locus_tag="Nham_0100" FT /colour=2 FT CDS complement(117041..117328) FT /locus_tag="Nham_0101" FT /product="Excinuclease ABC, C subunit-like" FT /note="PFAM: Excinuclease ABC, C subunit-like: (1.7e-15)" FT /note="SPTR top hit: 'Q3PPJ8 Excinuclease ABC, C subunit, FT N-terminal. Nitrobacter hamburgensis X14., evalue=2e-49, FT 100% identity hit'" FT /note="KEGG top hit: 'rfe:RF_1008 category=Unassigned, FT evalue=4e-29, 63.829787% identity hit'" FT /note="COGs: 'evalue=9e-25 score=104 category=L FT group=COG2827 endonuclease containing a URI domain' " FT /note="InterPro IPR000305" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MKQPCVYIVASKRNGTLYTGVTANLQRRIFEHRESLVAGFSKKYGCKILVWYEAHETMTDAITREKQIKAGSRVKKLALIEGLNPEWNDLFETLF*" FT gene complement(117041..117328) FT /locus_tag="Nham_0101" FT /colour=2 FT CDS complement(117377..118261) FT /locus_tag="Nham_0102" FT /product="parB-like partition proteins" FT /note="TIGRFAM: parB-like partition proteins: (1.1e-54)" FT /note="PFAM: ParB-like nuclease: (1.9e-34)" FT /note="SPTR top hit: 'Q3PPJ7 ParB-like partition protein. FT Nitrobacter hamburgensis X14., evalue=1e-161, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0094 category=Unassigned, FT evalue=1e-146, 90.784983% identity hit'" FT /note="COGs: 'evalue=2e-32 score=133 category=K FT group=COG1475 transcriptional regulators' " FT /note="InterPro IPR003115:IPR004437" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MADEARSRLGRGLASLIGDVGGEAAHTERPRAQRKVPIEFLKPNPRNPRRAFSDVELGELSDSIKQHGVIQPIVVRPVKG FT AQDRFEIIAGERRWRAAQSAGLHEVPIVPVDVTDNVALEIAIIENVQRENLNAMEEAQGYHALASEFKRTQDDIAKIVGK FT SRSHVANMMRLTKLPDDVQALIASGELSAGHARALIGVPDPSMAAKRIVAEGLNVRQAEALAHEEGVPERKLQKARADKV FT LKDPDTLALEKRVSDALGLAVTVDHKNPGGVVHIRYRDLDQLDAILKRLDSKGS* " FT gene complement(117377..118261) FT /locus_tag="Nham_0102" FT /colour=6 FT CDS complement(118441..119301) FT /locus_tag="Nham_0103" FT /product="Cobyrinic acid a,c-diamide synthase" FT /note="PFAM: Cobyrinic acid a,c-diamide synthase: FT (4.2e-59)" FT /note="SPTR top hit: 'Q3PPJ6 Cobyrinic acid a,c-diamide FT synthase. Nitrobacter hamburgensis X14., evalue=1e-160, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0095 category=Unassigned, FT evalue=1e-142, 92.413793% identity hit'" FT /note="COGs: 'evalue=2e-60 score=226 category=D FT group=COG1192 ATPases involved in chromosome partitioning' FT " FT /note="InterPro IPR002586" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTVIDEIYQYDGKDAGSPAGHPRIISLANQKGGVGKTTTAINLGTALAAIGERVLIVDLDPQGNASTGLGIDRRDRNVST FT YDVLIGEAPLRDAVVPTAVPRLHIAASTMDLSGLELELGTTKDRAFRLRDAIAALNGNAADHSDYTYVLIDCPPSLNLLT FT VNAMAASDAILVPLQCEFFALEGLSQLLQTVEQVRSTLNPNLSIHGIVLTMFDSRNNLSNQVVADVRQFMGSKVYDTMIP FT RNVRISEAPSYGKPVLVYDLKCSGSEAYLKLATEVIQRERELRTTH* " FT gene complement(118441..119301) FT /locus_tag="Nham_0103" FT /colour=9 FT CDS complement(119298..120080) FT /locus_tag="Nham_0104" FT /product="methyltransferase GidB" FT /note="TIGRFAM: methyltransferase GidB: (5e-26)" FT /note="PFAM: glucose inhibited division protein: FT (9.3e-30)" FT /note="SPTR top hit: 'Q3PPJ5 Glucose inhibited division FT protein. Nitrobacter hamburgensis X14., evalue=1e-146, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0096 category=Unassigned, FT evalue=1e-106, 83.620690% identity hit'" FT /note="COGs: 'evalue=6e-37 score=147 category=M FT group=COG0357 S-adenosylmethionine-dependent FT methyltransferase involved in bacterial cell division' " FT /note="InterPro IPR003682" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MADWQKAHGRLQRDVAGNRTVPYAGADAMTRPRQAQSPLSAADKAAALALTPVSRETEARLDAYVDLLVQWQTKTNLIAS FT STLPQLWTRHIADSLQLLALAPQAKRWADFGSGGGFPGVVLACALADVEGARIDLVERNAKKAAFLREAVRITGTPGVIH FT PMDIGDYVDRLDGRIDCVTARALAPLQVLLGFAEPLVKQGAKALLLKGQDVEAELTEATKYWNIEPRLHSSRTGGQGWIV FT ELDRIERRDRPPTKQAWRRA* " FT gene complement(119298..120080) FT /locus_tag="Nham_0104" FT /colour=9 FT CDS complement(120558..122432) FT /locus_tag="Nham_0105" FT /product="glucose inhibited division protein A" FT /note="TIGRFAM: glucose inhibited division protein A: FT (8.6e-250)" FT /note="PFAM: glucose-inhibited division protein A: FT (4.1e-252) FAD-dependent pyridine nucleotide-disulphide FT oxidoreductase: (0.00069)" FT /note="SPTR top hit: 'Q3PPJ4 Glucose-inhibited division FT protein A subfamily. Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0097 category=Unassigned, FT evalue=0.0, 88.282504% identity hit'" FT /note="COGs: 'evalue=0.0 score=874 category=D FT group=COG0445 NAD/FAD-utilizing enzyme apparently involved FT in cell division' " FT /note="InterPro FT IPR000205:IPR001100:IPR002218:IPR004416:IPR013027" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTASFDVIVIGGGHAGCEAATAAARMGARTALVTHRLSTVGAMSCNPAIGGLGKGHLVREIDALDGLMGRVADAAGIQFR FT MLNRRKGPAVRGPRAQEDRKLYAAAMQAEIREAANLVVIEGEADDLIVADGRIAGIRLIDSRAFKTGAVVVTTGTFLRGL FT IHLGEKSWPAGRVDEAPALGLSVSFERIGFTLGRLKTGTPPRLDGATIDWAAVEMQPGDDPPEPFSVMTSRITTPQIRCG FT ITRTMPATHEVIRANVHRSPIYSGQIRSSGPRYCPSLEDKVVRFGDRDGHQIFLEPEGLDDTTVYPNGISTSLPEEVQLA FT ILATIPGLTKVRMIRPGYAIEYDHVDPRELDPTLQTRRLPGLFLAGQINGTTGYEEAAAQGLVAGLNAALAAGGGDPVVF FT DRADGYLGVMIDDLVTRGITEPYRMFTSRAEYRLTLRADNADQRLTDKGIAMGCVGAGRAVHHRAKMAALSAAKALATSL FT SVTPNEAARYGLSLNRDGHRRSAFELLAYPEIGWGEVAAIWPELSAIDPGVAVHLEIDAKYDVYLKRQTADVEAFRRDES FT LVLADVDYDAVPGLSNEARARLERARPRTVGQAGRLDGITPAALGILAAYLRREARKKTATASA* FT " FT gene complement(120558..122432) FT /locus_tag="Nham_0105" FT /colour=9 FT CDS complement(122606..123979) FT /locus_tag="Nham_0106" FT /product="tRNA modification GTPase TrmE" FT /note="TIGRFAM: tRNA modification GTPase TrmE: (6.6e-70) FT Small GTP-binding protein domain: (2.7e-16) GTP-binding: FT (4.8e-07)" FT /note="PFAM: GTP-binding protein, HSR1-related: (2.6e-42)" FT /note="SPTR top hit: 'Q3PPJ3 TRNA modification GTPase FT TrmE:Small GTP-binding protein domain:GTP- binding. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0098 category=Unassigned, FT evalue=0.0, 80.962801% identity hit'" FT /note="COGs: 'evalue=1.0e-122 score=432 category=R FT group=COG0486 GTPase' " FT /note="InterPro IPR002917:IPR004520:IPR005225:IPR005289" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MHPREQTIFALSSGRPPSAIAVVRVSGAEAGTALQEIAGAIPVVRTAKRVLLRDLLGEAIDDAIVLWFAGPASATGEDVA FT EFHVHGSRAVLNALFAALSSIDHVRPAEPGEFTRRAFENGKIDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGDRAREW FT RRELIEASALIEAGIDFADEGDVPDDLLKPAMEKIARLRREIEETLAASAQSERLRDGMTVAIAGPPNAGKSTLLNRLAR FT REAAIVSPYAGTTRDVIEVHLDLDGYPVTLIDTAGIRETDDPVEQEGVRRARDRAASADLVLWLADDDNGVGPSQTIGEG FT GVPLWLVRNKIDVSGAESDGANPRQLEAKPGQGILPRHFWISASRGDGVDELVAALTAFSDGWFGSGETAVITRLRHRNI FT LQDAAASLAKAEALIGQGDELVAEEIRIAVRLIGRLLGRVDIDDILDSLFHDFCIGK* FT " FT gene complement(122606..123979) FT /locus_tag="Nham_0106" FT /colour=11 FT CDS 124093..126141 FT /locus_tag="Nham_0107" FT /product="protein of unknown function DUF255" FT /note="PFAM: protein of unknown function DUF255: FT (8.1e-46)" FT /note="SPTR top hit: 'Q3PPJ2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0099 category=Unassigned, FT evalue=0.0, 82.840237% identity hit'" FT /note="COGs: 'evalue=0.0 score=688 category=O FT group=COG1331 Highly conserved protein containing a FT thioredoxin domain' " FT /note="InterPro IPR004879" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MNHAATGSGRPANRLAAETSPYLLQHQHNPVDWWPWGPAALAEAQRTNRPILLSIGYAACHWCHVMAHESFEDDEVAAVM FT NELFVCIKVDREERPDIDQIYMNALHLLGEQGGWPLTMFLSPDGSPFWGGTYFPKLPDFGRPAFTDVLQSVARVFHDKPE FT RVTLNRDAVIARLSERAKVGSPANLGVAELNTAAVSIARSTDPVNGGLHGAPKFPQCSVLEFLWRAGARTGSDRFYAATT FT LTLTQMSQGGIYDHLGGGYARYSVDDRWLVPHFEKMLYDNAQILDLLALDYARSKNPLYRERAIETVAWLLREMLTGEGG FT FASSLDADSEGKEGKFYVWSLSEIEEVLGATDAADFAARYDITANGNFEGRNIPNRLKSSDLVSDDGAHMRTLRAKLLAR FT RAGRVRPGLDDKVLADWNGLMIAALVHGACAFGLPDWLETARTAFEFIRKTMTRGDRLGHSWREGRLLVPALACDYAAMV FT RAALALSEATGDTAYLEQALRWQATLDTHYADVEHGGYYLTADDAEGLIVRPHSTIDDAIPNYNGLIAQNLVRLAALTGD FT SKWRDRIDALFGALLSRAAENGFGHLALLSALDLRLTGAEIVVVGEGAQAEALLAAARALPHATSIVLHVSRGDALPAEH FT PARAKADSVQGAAAFVCRNQSCSLPVTTPQALVDLVMQRTSA* " FT gene 124093..126141 FT /locus_tag="Nham_0107" FT /colour=9 FT CDS complement(126334..127599) FT /locus_tag="Nham_0108" FT /product="transcription termination factor Rho" FT /note="TIGRFAM: transcription termination factor Rho: FT (6.5e-229)" FT /note="PFAM: H+-transporting two-sector ATPase, alpha/beta FT subunit, central region: (2.5e-78) Rho termination FT factor-like: (1.6e-19) Rho termination factor, FT RNA-binding: (1.9e-58)" FT /note="SMART: ATPase: (1.2e-11) Cold shock protein: FT (2.1e-22) " FT /note="SPTR top hit: 'Q3PPJ1 Transcription termination FT factor Rho. Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0100 EC=3.6.3.15 FT category=Unassigned, evalue=0.0, 98.574822% identity hit'" FT /note="COGs: 'evalue=0.0 score=718 category=K FT group=COG1158 Transcription termination factor' " FT /note="InterPro FT IPR000194:IPR003593:IPR004665:IPR011112:IPR011113:IPR011129" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MREMKLQDLKAKTPAELVSFAEELGVENASTMRKQELMFAILKQLAIQEIDIIGEGVVEVLSDGFGFLRSPDANYLPGPD FT DIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDSTRKDL FT SARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV FT RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIA FT TALVDTGSRMDEVIFEEFKGTGNSELILDRKVSDKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAID FT FLLDKLRNTKNNAEFFESMNT* " FT gene complement(126334..127599) FT /locus_tag="Nham_0108" FT /colour=6 FT CDS complement(127911..128942) FT /locus_tag="Nham_0109" FT /product="transposase IS116/IS110/IS902" FT /note="PFAM: transposase, IS111A/IS1328/IS1533: (0.0011) FT transposase IS116/IS110/IS902: (9e-31)" FT /note="SPTR top hit: 'Q3PYE9 Transposase, FT IS111A/IS1328/IS1533:Transposase IS116/IS110/IS902. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'ccr:CC2740 category=Unassigned, FT evalue=8e-97, 51.343284% identity hit'" FT /note="COGs: 'evalue=8e-32 score=131 category=L FT group=COG3547 Transposase and inactivated derivatives' " FT /note="InterPro IPR002525:IPR003346" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MEKIITIGLDLAKSVFQVHGIADDGSIVVRRALRRSQVLDFFRAIDPCLVGIEACASSHYWANAIGQLGHTVRMMPPTYV FT KAYVKRSKTDAADAEAICEAVSRPTMRFVPIKTPAEQAACMVLRTRELFVRQRSQTANAMRAHMAELGIIAAAGMTSIAK FT LILVLRDAEDTRLPVAARAALLEMAEQIEMLTARIEKLDTKIIATVKADETAWRLTSIPGVGPIIAATVRATIQDPTVFK FT TGRDLAAWIGITPRANSSGGKERLGRISKQGNKQLRTLLIVGATSILKQARRGVKLPSWIISLMARRPYKVVAVALANKI FT ARTIWALLVKGGTYQAPAIMTRA* " FT gene complement(127911..128942) FT /locus_tag="Nham_0109" FT /colour=2 FT CDS 129221..130444 FT /locus_tag="Nham_0110" FT /product="transposase, mutator type" FT /note="PFAM: transposase, mutator type: (1.5e-177)" FT /note="SPTR top hit: 'Q3PPI9 Transposase, mutator type. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'sme:SMa1356 category=Unassigned, FT evalue=1e-159, 69.521411% identity hit'" FT /note="COGs: 'evalue=4e-98 score=351 category=L FT group=COG3328 Transposase and inactivated derivatives' " FT /note="InterPro IPR001207" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MARRKDPAIPNDLLDQLLAGGAASAAFEQGGLLDSLKKALTERALNAEMDHHLASGEDAGNTRNGYGRKTVTTETGKLEI FT DIPRDRQSSFDPQLIAKYQRRFPGFDDKIVSMYARGMSTREITGHLRDLYGIEVSPDLISTVTDAVLDEVATWQQRPLDP FT VYPLIFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVLGLWLEQNEGAKFWLRVMNELKNRGVDDILLAVVDGLKGFP FT DAITAVFPEAVVQTCIVHLLRNSMDFVSWKDRKGLATALKDIYRAVDADAAEKALAAFEAGPWGQRYPAIGQSWRRAWGE FT VIPFFAFPDEVRRIVYTTNSIEALNSKLRRAVRARGHFPSDDAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER FT FIKAMAA* " FT gene 129221..130444 FT /locus_tag="Nham_0110" FT /colour=2 FT CDS complement(130647..131066) FT /locus_tag="Nham_0111" FT /product="conserved hypothetical protein 701" FT /note="PFAM: conserved hypothetical protein 701: FT (1.2e-51)" FT /note="SPTR top hit: 'Q3PPI8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=9e-77, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0101 category=Unassigned, FT evalue=2e-72, 92.086331% identity hit'" FT /note="COGs: 'evalue=3e-39 score=153 category=S FT group=COG1981 membrane protein' " FT /note="InterPro IPR005265" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MYEWIKAFHVIAVISWMAGMLYLPRLFVYHCDAEVGSKQSETFKVMERRLFKAIINPAMMVAWGLGLYMMWAHHWYSVGW FT FQGKLALVILMSAIHGYFARRVRDFAADRNVMSQRFYRIINEVVTVLMVGIVILVIVKP* FT " FT gene complement(130647..131066) FT /locus_tag="Nham_0111" FT /colour=13 FT misc_feature complement(order(130656..130709,130773..130838,130851..130916,130980..131036)) FT /colour=11 FT /locus_tag="Nham_0111" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 131529..132371 FT /locus_tag="Nham_0112" FT /product="protein of unknown function DUF299" FT /note="PFAM: protein of unknown function DUF299: FT (1.3e-113)" FT /note="SPTR top hit: 'Q3PPI7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-153, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0102 category=Unassigned, FT evalue=1e-135, 87.142857% identity hit'" FT /note="COGs: 'evalue=3e-79 score=288 category=S FT group=COG1806 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR005177" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAPITGSNFHLHLVSDSTGETLITVSRAVVAQYANVTPVEHVYPLVRSQKQLDRVLAEIEEEPGIVLFTLLEKDLVERLE FT AKCQEINSPSLSIIGPVMQLFQAYLGAATIGRVGAQHTLNADYFRRIDALNYTMMHDDGQHVEGLEEADVVLVGVSRTSK FT TPTSIYLANRGIRTANVPLVPGIAIPRQLESLRTPLVVSLHAAPERLIQVRQNRLLSIGTRAGNDTYIDRQSVADEVTYA FT RRLSAKHDWVQLDVTRRSIEETAAAIMKLFADRQRQRQPE* " FT gene 131529..132371 FT /locus_tag="Nham_0112" FT /colour=13 FT CDS 132381..132989 FT /locus_tag="Nham_0113" FT /product="maf protein" FT /note="TIGRFAM: maf protein: (1.3e-27)" FT /note="PFAM: Maf-like protein: (5.7e-31)" FT /note="SPTR top hit: 'Q3PPI6 Maf-like protein. Nitrobacter FT hamburgensis X14., evalue=1e-108, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0103 category=Unassigned, FT evalue=1e-87, 81.683168% identity hit'" FT /note="COGs: 'evalue=2e-42 score=165 category=D FT group=COG0424 Nucleotide-binding protein implicated in FT inhibition of septum formation' " FT /note="InterPro IPR003697" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MAVWREPKPLILASQSRVRQALLANAGLSFEAIPAAIDERAIQRSCGLTSGAEIAVRLACEKARYVSLRSPGRYVIGADQ FT TLECDGRLFNKPDGRVGAAEHLRALSGRTHALHAAVAIVRDGRQLFEYVSVARMTMRELSEDTIEAYLNAAGDEVTASVG FT AYQLENLGVHLFSRVEGDHFSILGLPLLPLLAFLRSQGLLSL* " FT gene 132381..132989 FT /locus_tag="Nham_0113" FT /colour=9 FT CDS 133006..133605 FT /locus_tag="Nham_0114" FT /product="Dephospho-CoA kinase" FT /EC_number="2.7.1.24" FT /note="PRIAM: Dephospho-CoA kinase" FT /note="PFAM: Dephospho-CoA kinase: (1.6e-38)" FT /note="SPTR top hit: 'Q3PPI5 Dephospho-CoA kinase (EC FT 2.7.1.24). Nitrobacter hamburgensis X14., evalue=1e-142, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0104 coaE EC=2.7.1.24 FT category=Unassigned, evalue=6e-92, 87.878788% identity FT hit'" FT /note="COGs: 'evalue=1e-46 score=179 category=H FT group=COG0237 Dephospho-CoA kinase' " FT /note="InterPro IPR001977" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MLVLGLTGSIGMGKSTTAELFSEAGVPVYDADATVHKIYEGEAAPAIEAAFPGTTVNGKVDREKLSAKVVHDAAAMKRLE FT QIVHPMLHAYRQAFLDQAEQSGAAVAVVDVPLLFETGGEKRVDAVVVVSTTPEVQRERILARGNMTDEKLDAILARQLPD FT AEKRKRADFVVDTSHGLDHVRARIREILAEAAKMPRRRL* " FT gene 133006..133605 FT /locus_tag="Nham_0114" FT /colour=12 FT CDS 133628..134347 FT /locus_tag="Nham_0115" FT /product="DNA polymerase III, epsilon subunit" FT /EC_number="2.7.7.7" FT /note="TIGRFAM: DNA polymerase III, epsilon subunit: FT (1.6e-45)" FT /note="PRIAM: DNA-directed DNA polymerase" FT /note="PFAM: Exonuclease: (3.2e-38)" FT /note="SPTR top hit: 'Q3PPI4 DNA polymerase III, epsilon FT subunit:DNA polymerase 3, epsilon subunit (EC 2.7.7.7). FT Nitrobacter hamburgensis X14., evalue=1e-133, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0105 EC=2.7.7.7 FT category=Unassigned, evalue=1e-114, 87.606838% identity FT hit'" FT /note="COGs: 'evalue=1e-41 score=163 category=L FT group=COG0847 DNA polymerase III epsilon subunit and FT related 3'-5' exonucleases' " FT /note="InterPro IPR002453:IPR006054:IPR006055:IPR006309" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MREIVLDIETTGLDPLRGDRVVEIGCVEIFNRMPTGQTFHRYINPERDMPQEAFAVHGLSSEFLAEKPLFTHIVDDFLEF FT IGDAPLVIHNASFDISFINAELDRLKMRTIGRDRLVDTLLLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLA FT EVYIDLIGARQPQLILAETASRRTGGTLDMPRRQRTVPLAPRVTDADRIAHRDFVATLGEKAIWKEFAGTEALKQAVSD* FT " FT gene 133628..134347 FT /locus_tag="Nham_0115" FT /colour=2 FT CDS complement(134447..134926) FT /locus_tag="Nham_0116" FT /product="protein-export protein SecB" FT /note="TIGRFAM: protein-export protein SecB: (4.4e-41)" FT /note="PFAM: protein export chaperone SecB: (3.9e-43)" FT /note="SPTR top hit: 'Q3PPI3 Protein export chaperone FT SecB. Nitrobacter hamburgensis X14., evalue=2e-87, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0106 secB FT category=Unassigned, evalue=4e-74, 83.647799% identity FT hit'" FT /note="COGs: 'evalue=1e-40 score=158 category=U FT group=COG1952 Preprotein translocase subunit SecB' " FT /note="InterPro IPR003708" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTNGNGTPPEGAPSPQLNVLAQYTKDLSFENPNAPSSLAPQQKPPSISVQINVNANNVAQDEFEVTLTVEGKAEHNDKLM FT FRFELAYAGLFRIVNVPQENLPPLVMIECPRLLFPFAREIIATAVRDGGFPPLMLDPVDFVGMFRQNMERQAAVQQKPS* FT " FT gene complement(134447..134926) FT /locus_tag="Nham_0116" FT /colour=9 FT CDS 135379..136083 FT /locus_tag="Nham_0117" FT /product="import inner membrane translocase, subunit FT Tim44" FT /note="PFAM: import inner membrane translocase, subunit FT Tim44: (1.1e-65)" FT /note="SPTR top hit: 'Q3PPI2 Mitochondrial import inner FT membrane translocase, subunit Tim44. Nitrobacter FT hamburgensis X14., evalue=1e-128, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0107 category=Unassigned, FT evalue=1e-114, 89.224138% identity hit'" FT /note="COGs: 'evalue=4e-44 score=171 category=S FT group=COG4395 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR007379" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VDIYTIIFLALAVFIFLRLRSVLGQRTGSERPPYDRATREVLHGTQDKNVVPMAGPVIDQASSAPTADAASTPDRWKNLA FT EPGTPLALGLDAIAAHDSSFDPKHFISGARSAYEMIVLAFANGDRRTLKDLLSSDVYESFDAAIKDREKLEQKTETRFVS FT IDKVELIGAELRDSAEQLTVRFISQMISMTRDKTGAIVDGNPEKISDITDVWTFARDIPSRDPNWKLVGTGSTD* FT " FT gene 135379..136083 FT /locus_tag="Nham_0117" FT /colour=13 FT CDS 136094..137596 FT /locus_tag="Nham_0118" FT /product="MltA" FT /note="PFAM: MltA: (3.4e-105) 3D: (6.7e-33)" FT /note="SPTR top hit: 'Q3PPI1 MltA:3D. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0108 category=Unassigned, FT evalue=0.0, 78.473581% identity hit'" FT /note="COGs: 'evalue=4e-76 score=279 category=M FT group=COG2821 Membrane-bound lytic murein FT transglycosylase' " FT /note="InterPro IPR005300:IPR010611" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="LKRCAVGFCVAAALVPVAVEAHDTRHRPAWPLEIAGGQYIPVSWAEIAGWNDDNHLDAFKAFRASCRAVTARRISAVGQK FT ALGTSLREPCRVAKMAAISDDAKARAFFETRFRAVRISRLGETDGFVTGYYEPIIDGSRTRTDTYTVPVYRRPSNLFVRG FT FTQGAPSLPNSGPVYRKIGRRKLVPYYDRAEIEDGAIAGRGLEICWLKSQTDLLFTQIQGSARVRLEDGSTIRINYDSYN FT GYPYTAVGRILIERNIVPKDQMSMQRIRQWMNENPDGAIELRRQNRSYVFFREVKLSDNDEAVGAQGVPLAPGRSIAVDK FT SLHVYGTPFFIEGELPIESEQAKTPFHRLMIAQDTGSAILGPARADLYFGAGPEAGRVSGRLRHNMQFVMLVPNSLDPVA FT RGRTMPLPETRPSARIAKLFPQKKNQKPDDPKVAPQQSAPSAVVPAGQPARAALVSAAKAAPPEAVPLPAVRPEVMPGPH FT QARRHYHRRHHRHERRRNPR* " FT sig_peptide 136094..136159 FT /colour=11 FT /locus_tag="Nham_0118" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.978 at FT residue 22" FT gene 136094..137596 FT /locus_tag="Nham_0118" FT /colour=9 FT CDS 137593..138183 FT /locus_tag="Nham_0119" FT /product="Smr protein/MutS2" FT /note="PFAM: Smr protein/MutS2: (3.8e-24)" FT /note="SPTR top hit: 'Q3PPI0 Smr protein/MutS2 C-terminal. FT Nitrobacter hamburgensis X14., evalue=1e-107, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0109 category=Unassigned, FT evalue=2e-53, 60.512821% identity hit'" FT /note="COGs: 'evalue=3e-23 score=101 category=S FT group=COG2840 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR002625" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKRLPPRISDLPAPSRRRRALTGEERELWESVAKQAKPLRKTARLWTSLEGALSGAPDPAREAAAKAVAVAPANLKPSRP FT VPPPLTLLSRRERARLSRGKQDIEARIDLHGMTQARAHRALHNFLLRASGDGLRFVLVITGKGRAAGLDPSRGILRQQVP FT EWLGLPEFRTLVVGFEQAHIGHGGEGALYVRVRRRR* " FT gene 137593..138183 FT /locus_tag="Nham_0119" FT /colour=13 FT CDS complement(138299..139600) FT /locus_tag="Nham_0120" FT /product="heat shock protein HslVU, ATPase subunit HslU" FT /note="TIGRFAM: heat shock protein HslVU, ATPase subunit FT HslU: (2.2e-246)" FT /note="PFAM: AAA ATPase, central region: (3.4e-08) ATPase FT AAA-2: (4e-53)" FT /note="SMART: ATPase: (9.1e-14) " FT /note="SPTR top hit: 'Q3PPH9 Heat shock protein HslU. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0129 category=Unassigned, FT evalue=0.0, 94.226328% identity hit'" FT /note="COGs: 'evalue=0.0 score=666 category=O FT group=COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase FT subunit' " FT /note="InterPro IPR003593:IPR003959:IPR004491:IPR013093" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTHFSPREIVSELDRFIVGQTDAKRAVSIALRNRWRRQQLTGSMREEVLPKNILMIGPTGVGKTEIARRLAKLANAPFIK FT VEATKFTEVGYVGRDVEQIVRDLVEVAIGQTRERKRKDVQARAQLAAEERVLDALVGANASAATRDSFRRKLRAGDLNDK FT EIEIETQSSGGAPMFEIPGMPGAQVGAISIGDIFGKMGGRTKTRRLTVVDSYEILVNEESDKLLDSDQLTQEAIAAVENN FT GIVFLDEIDKICVRDGRSGGDVSREGVQRDLLPLIEGTTVSTKHGAVKTDHILFIASGAFHIAKPSDLLPELQGRLPIRV FT ELDALTRNDMRRILTEPEASLIKQYVALMQTEGVTLDITDDAIDALADIAVAVNSTVENIGARRLQTVMERVLDDISFSA FT PDRNGETVRIDAGYVQKHIGDLAKNADLSRFIL* " FT gene complement(138299..139600) FT /locus_tag="Nham_0120" FT /colour=9 FT CDS complement(139683..140237) FT /locus_tag="Nham_0121" FT /product="20S proteasome, A and B subunits" FT /note="PFAM: 20S proteasome, A and B subunits: (2.7e-37)" FT /note="SPTR top hit: 'Q3PPH8 20S proteasome, A and B FT subunits. Nitrobacter hamburgensis X14., evalue=5e-98, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0127 category=Unassigned, FT evalue=8e-94, 96.153846% identity hit'" FT /note="COGs: 'evalue=3e-74 score=270 category=O FT group=COG5405 ATP-dependent protease HslVU (ClpYQ) FT peptidase subunit' " FT /note="InterPro IPR001353" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MQASQPEVWHGTTILTVRKGGKVVIGGDGQVSIGQTVIKSNAKKVRKLGKGDVIGGFAGATADAFTLFERLESKLEQYPG FT QLTRAAVELAKDWRTDRYLRRLEAMMLVADKDVSLVLTGTGDVLEPEAGVMAIGSGGNYALSAARALIDSDKDAETIVRR FT SLDIAADICVYTNRNLTIETLSTD* " FT gene complement(139683..140237) FT /locus_tag="Nham_0121" FT /colour=9 FT CDS 140506..141099 FT /locus_tag="Nham_0122" FT /product="Imidazoleglycerol-phosphate dehydratase" FT /EC_number="4.2.1.19" FT /note="PRIAM: Imidazoleglycerol-phosphate dehydratase" FT /note="PFAM: imidazoleglycerol-phosphate dehydratase: FT (1e-93)" FT /note="SPTR top hit: 'Q3PPH7 Imidazoleglycerol-phosphate FT dehydratase (EC 4.2.1.19). Nitrobacter hamburgensis X14., FT evalue=1e-108, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0126 EC=4.2.1.19 FT category=Unassigned, evalue=1e-100, 92.893401% identity FT hit'" FT /note="COGs: 'evalue=3e-79 score=287 category=E FT group=COG0131 Imidazoleglycerol-phosphate dehydratase' " FT /note="InterPro IPR000807" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MRTATIKRKTKETDIEVAVNLDGSGVSSVATGIGFFDHMLDLLARHSRIDIMVKADGDLHVDYHHTTEDVGIALGQAVKQ FT ALGTMAGITRYACAHMPMDETLSRVVIDISGRPMLVFKVEFPRDKIGEFDTELVREWFNAFAVNAGVTLHVETLYGENSH FT HIAESCFKGLARALRAAVAIDPRAAGEVPSTKGQLGG* " FT gene 140506..141099 FT /locus_tag="Nham_0122" FT /colour=10 FT CDS 141126..141641 FT /locus_tag="Nham_0123" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPH6 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=6e-97, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0125 category=Unassigned, FT evalue=9e-70, 72.988506% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSVYTVHAPPVDGTDVRGTTDKFVFVRDGFSFWAFVFGPVWLLYQRLWLAFAGYMVLSIALEVVLTLLHAGSGMRSIVML FT LIAVLMGLEAASLRRWTLSRGKWRQFDVVVADDEEAAERRFFDRWTMTRGVNFDPSTVDRGAPPPTRNGPGQPSTPRSDI FT VGLFPQPGFPR* " FT gene 141126..141641 FT /locus_tag="Nham_0123" FT /colour=13 FT misc_feature order(141195..141254,141267..141335,141345..141404) FT /colour=11 FT /locus_tag="Nham_0123" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 141638..142288 FT /locus_tag="Nham_0124" FT /product="imidazole glycerol phosphate synthase, glutamine FT amidotransferase subunit" FT /note="TIGRFAM: imidazole glycerol phosphate synthase, FT glutamine amidotransferase subunit: (2.5e-80)" FT /note="PFAM: glutamine amidotransferase class-I: FT (6.3e-40)" FT /note="SPTR top hit: 'Q3PPH5 Imidazole glycerol phosphate FT synthase, glutamine amidotransferase subunit. Nitrobacter FT hamburgensis X14., evalue=1e-122, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0124 hisH FT category=Unassigned, evalue=1e-118, 94.907407% identity FT hit'" FT /note="COGs: 'evalue=7e-71 score=260 category=E FT group=COG0118 Glutamine amidotransferase' " FT /note="InterPro IPR000991:IPR010139:IPR011702:IPR012998" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="VSAAIIDYGSGNLHSAAKAFECAARGMEGMEKIVVTRDPDVVFRADRVVLPGVGAFADCRRGLDALDGMVQALTEVVRDK FT ARPFLGICVGMQLMATRGKEHVTTDGLGWIAGDVEKISPRDESLKIPHMGWNTLDPVREHPVLEGLPLGPKGRHAYFVHS FT YQLNAANESDVLARADYGGPVTAIVGKDTAIGTQFHPEKSQRFGLALIANFLKWKP* FT " FT gene 141638..142288 FT /locus_tag="Nham_0124" FT /colour=10 FT CDS 142285..143025 FT /locus_tag="Nham_0125" FT /product="Phosphoribosylformimino-5-aminoimidazole FT carboxamide ribotide isomerase" FT /note="TIGRFAM: Phosphoribosylformimino-5-aminoimidazole FT carboxamide ribotide isomerase: (2.5e-115)" FT /note="PFAM: histidine biosynthesis: (2.9e-114)" FT /note="SPTR top hit: 'Q3PPH4 FT Phosphoribosylformimino-5-aminoimidazole carboxamide FT ribotide isomerase. Nitrobacter hamburgensis X14., FT evalue=1e-132, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0123 EC=5.3.1.16 FT category=Unassigned, evalue=1e-124, 91.967871% identity FT hit'" FT /note="COGs: 'evalue=6e-79 score=287 category=E FT group=COG0106 Phosphoribosylformimino-5-aminoimidazole FT carboxamide ribonucleotide (ProFAR) isomerase' " FT /note="InterPro IPR003009:IPR006062:IPR006063" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="VILFPAIDLKDGQCVRLEQGDMARATVFNFDPAEQARAFASQGFEYLHVVDLDGAFAGRPVNADAVERMLKNVAMPVQLG FT GGIRDLKTVEAWLKKGITRVIIGTAAVRDPVLVKEAAKAFPGRVAVGLDARDGKVAVEGWAETSEVTALDIARRFEDAGI FT AAIIFTDIARDGLLKGLNLDATIALADSISIPVIASGGFASIADVKALLAPRAKKLAGAIAGRALYDGRLDPAEALALIR FT AARAAA* " FT gene 142285..143025 FT /locus_tag="Nham_0125" FT /colour=10 FT CDS 143041..143817 FT /locus_tag="Nham_0126" FT /product="imidazoleglycerol phosphate synthase, cyclase FT subunit" FT /note="TIGRFAM: imidazoleglycerol phosphate synthase, FT cyclase subunit: (4e-148)" FT /note="PFAM: histidine biosynthesis: (1.8e-138)" FT /note="SPTR top hit: 'Q3PPH3 Histidine biosynthesis FT protein HisF. Nitrobacter hamburgensis X14., FT evalue=1e-142, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0122 hisF EC=5.3.1.16 FT category=Unassigned, evalue=1e-136, 94.961240% identity FT hit'" FT /note="COGs: 'evalue=1.0e-111 score=393 category=E FT group=COG0107 Imidazoleglycerol-phosphate synthase' " FT /note="InterPro IPR003009:IPR004651:IPR006062" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MFKVRVIPCLDVKDGRVVKGVNFVDLRDAGDPVEAAVAYDAAGADELTFLDITATHENRGIMLDVVRRTAEACFMPVTVG FT GGVRTIDDIRTLLRSGADKVSINSAAVSRREFVKEAAEKFGDQCIVVAIDAKRVSRAGGSDRWEIFTHGGRKSTGIDAID FT YAQEVVSLGAGEILLTSMDRDGTRQGFDLPLTRLVADSVSVPVIASGGVGNLDHLVDGIREGHATAVLAASIFHFGEFTI FT RQAKDHMARAGLPMRLDP* " FT gene 143041..143817 FT /locus_tag="Nham_0126" FT /colour=10 FT CDS 143899..144222 FT /locus_tag="Nham_0127" FT /product="phosphoribosyl-ATP pyrophosphohydrolase" FT /note="PFAM: phosphoribosyl-ATP pyrophosphohydrolase: FT (6.5e-26)" FT /note="SPTR top hit: 'Q3PPH2 Phosphoribosyl-ATP FT pyrophosphohydrolase. Nitrobacter hamburgensis X14., FT evalue=2e-54, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0121 hisE EC=3.6.1.31 FT category=Unassigned, evalue=3e-45, 83.177570% identity FT hit'" FT /note="COGs: 'evalue=5e-19 score=86.0 category=E FT group=COG0140 Phosphoribosyl-ATP pyrophosphohydrolase' " FT /note="InterPro IPR008179" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MPRFTIHDLAATIDARAASGGDASYTRKLLDKGSGHCAKKFGEEAVETVIAAIENDRHHLIAEGADLMFHFLVLLKARGV FT TFEDIEFALAQRTTMSGLEEKAARNRE* " FT gene 143899..144222 FT /locus_tag="Nham_0127" FT /colour=10 FT CDS 144237..145193 FT /locus_tag="Nham_0128" FT /product="pantothenate kinase" FT /EC_number="2.7.1.33" FT /note="TIGRFAM: pantothenate kinase: (1.1e-135)" FT /note="PRIAM: Pantothenate kinase" FT /note="PFAM: phosphoribulokinase/uridine kinase: FT (0.00012)" FT /note="SPTR top hit: 'Q3PPH1 Pantothenate kinase (EC FT 2.7.1.33). Nitrobacter hamburgensis X14., evalue=1e-179, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0120 EC=2.7.1.33 FT category=Unassigned, evalue=1e-163, 90.880503% identity FT hit'" FT /note="COGs: 'evalue=4e-94 score=338 category=H FT group=COG1072 Panthothenate kinase' " FT /note="InterPro IPR004566:IPR006083" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MDLRAEQQQYNPYRIFSRSEWAKLRDDMPMTLAADEIAALRSMHDRLDLTEVEEIYLPLSRLLSIYVASMQRLFVAQRRF FT LGIQDRKVPYIIGVAGSVAVGKSTTARVLQALLARWSPGPKVDLITTDGFLFPNAVLERHGLMQKKGFPESYKLPMLLAF FT LSDIKAGRAPVRAPVYSHLTYDIVPKSWIEVSQPDILIVEGVNVLQTGRLPRDGRAVPVVSDFFDFSVYLDAEEPVLRDW FT YVKRFLALRDTAFHDPRSYFHRYALLSDDEATATAIAIWERTNRANLEDNILPTRPRATLILKKGADHVVEQVALRRL* FT " FT gene 144237..145193 FT /locus_tag="Nham_0128" FT /colour=12 FT CDS complement(145259..147517) FT /locus_tag="Nham_0129" FT /product="multi-sensor hybrid histidine kinase" FT /note="PFAM: PAS: (0.00037) response regulator receiver: FT (1.6e-31) ATP-binding region, ATPase-like: (2.5e-41) FT histidine kinase A-like: (1.3e-25)" FT /note="SPTR top hit: 'Q3PPH0 PAS precursor. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0119 category=Unassigned, FT evalue=0.0, 79.045093% identity hit'" FT /note="COGs: 'evalue=2e-42 score=167 category=T FT group=COG0642 Signal transduction histidine kinase' " FT /note="InterPro FT IPR000014:IPR001789:IPR003594:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MMARLFWIRARLRRLIRRHPRLHLAFRTVTTFSIAFGGAYGFVSGSRSADYDPNAFAIGVSFLFALACVALAILSMRLRW FT MRRKLRKISLHNETLADRNWELKEAEERARSLFESQDDLIVLRNADGLITSVNDAYCVLAQRSRADLLGSRFALPVLEQG FT ESAIESNGTRIHDQRVETALGPRWIAWREGLVRIDANHPAELQCVGRDVTNRTETEYALGEARDHANAANRAKSRFLAMT FT SHEIRTPLNGIIGMSGLLLDTSLTPEQTTYVKAVKASGDALLSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLA FT PRAQARQLEIAAYIDEQLPIEVIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRFMVQDTGIGITPDAQAR FT VFREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPGAGSTFEVSIPLPAHDSPPERKRFSTPDLTGHPIMLV FT APQTIEASLLARRLERWGAETCTISDIAVAHALLPGRPWHTVLVDHAMGAEDVWRLGQTACRHAARRIVMVTPSTRHDLQ FT TPGAGAFTGYLVKPLRTASIAARLAATADGPTALRATEGRHDCNTLEESEAPTTAPTQSLSILVAEDNEINALLIRSLLT FT RLGHDVILAANGEKALESWVAAGTAGAPYDLVLMDVQMPKLDGVETTKRIREREAGQRGSRTTILALTANALLDDRSACF FT EAGMDGFLVKPLDRDKLADALAGLMAARHIPA* " FT gene complement(145259..147517) FT /locus_tag="Nham_0129" FT /colour=15 FT misc_feature complement(order(147284..147349,147389..147454)) FT /colour=11 FT /locus_tag="Nham_0129" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(147368..147517) FT /colour=11 FT /locus_tag="Nham_0129" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.988) with cleavage site probability 0.539 at FT residue 50" FT CDS complement(147863..148759) FT /locus_tag="Nham_0130" FT /product="Mg chelatase-related protein" FT /note="SPTR top hit: 'Q3PPG9 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-165, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0118 EC=6.6.1.1 FT category=Unassigned, evalue=1e-157, 94.966443% identity FT hit'" FT /note="COGs: 'evalue=1.0e-103 score=368 category=O FT group=COG0606 ATPase with chaperone activity' " FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MIGSPGSGKSMLAARLPSILPPLSPAELLEVSMIASVAGEIDGGALTSRRPFRAPHHSASMAALTGGGTRAKPGEISLAH FT NGVLFLDELPEFDPRVLDSLRQPLENGEIAVSRANHRVTYPARFMLVAAMNPCRCGHAYEPGYACKRGRNDRCTADYQTR FT ISGPLMDRIDLRIEVPAVTASDLILPPSSEGSSEVGARVAAARDIQAERYAALGLPNVRTNAEAPAAALEDIAQPDAQGL FT KLLRDAAESMRLSARGYHRVLRVARTLADLDGADKIGRLHLAEALSYRALADDIKRAA* FT " FT gene complement(147863..148759) FT /locus_tag="Nham_0130" FT /colour=9 FT CDS 149040..149663 FT /locus_tag="Nham_0131" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPG8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-118, 100% FT identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRRRISCSQTWVCKMSVSWTDWKTDDKDGEFAGPAKQDIRRTYSFPNIDSAGGIATLTIVCVLEMTMLPDGENVSLDRKL FT RFYLRPFRLQHEANFIMGFMTRAESHGGEFDVLAAPSGDEDGMAIIAKYGGRNDVSACIATLRAGRDLVFSLQDEQESLV FT NFLLPNDDTFQRLYDETIQTLQQRAVLNQILMVWNGPSKRHRRCLSW* " FT gene 149040..149663 FT /locus_tag="Nham_0131" FT /colour=13 FT CDS 149698..150729 FT /locus_tag="Nham_0132" FT /product="transposase IS116/IS110/IS902" FT /note="PFAM: transposase, IS111A/IS1328/IS1533: (0.0011) FT transposase IS116/IS110/IS902: (9e-31)" FT /note="SPTR top hit: 'Q3PYE9 Transposase, FT IS111A/IS1328/IS1533:Transposase IS116/IS110/IS902. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'ccr:CC2740 category=Unassigned, FT evalue=8e-97, 51.343284% identity hit'" FT /note="COGs: 'evalue=8e-32 score=131 category=L FT group=COG3547 Transposase and inactivated derivatives' " FT /note="InterPro IPR002525:IPR003346" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MEKIITIGLDLAKSVFQVHGIADDGSIVVRRALRRSQVLDFFRAIDPCLVGIEACASSHYWANAIGQLGHTVRMMPPTYV FT KAYVKRSKTDAADAEAICEAVSRPTMRFVPIKTPAEQAACMVLRTRELFVRQRSQTANAMRAHMAELGIIAAAGMTSIAK FT LILVLRDAEDTRLPVAARAALLEMAEQIEMLTARIEKLDTKIIATVKADETAWRLTSIPGVGPIIAATVRATIQDPTVFK FT TGRDLAAWIGITPRANSSGGKERLGRISKQGNKQLRTLLIVGATSILKQARRGVKLPSWIISLMARRPYKVVAVALANKI FT ARTIWALLVKGGTYQAPAIMTRA* " FT gene 149698..150729 FT /locus_tag="Nham_0132" FT /colour=2 FT CDS 151606..152184 FT /locus_tag="Nham_0133" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPG6 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-132, 100% FT identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VLFGWLPWLRGRAVALERGTSIPADAQNDLALILLNEFSEWYRALAPKGTLPRAFTGVSSNGRQAVIILADLPLDHVQRR FT EFLIWLCRNEKFIAYAYGTRVGIANDSDSFTEGLDIYASSDRYDASRTLGVERQDGSFIQLTEHSHSLLPSNPANGIFFG FT LQRSNKTIAPDSEVAFLGIWQNLKSKVMWRQR* " FT gene 151606..152184 FT /locus_tag="Nham_0133" FT /colour=13 FT CDS complement(152663..153112) FT /locus_tag="Nham_0134" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPG5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=5e-86, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTVAPHILRRYVIDRASGRSQRHEWAFYAPDIDAWIRTDETSARRHEHHKRIRVDGRPWCDVLGHRADVRDDEALQIFFM FT TMIDPEDWHRLEIAVRNRPKRCLREWRASGKRIMAAVAPETAAPVPDTLGPLDGWPSERGSGQRSLLPR* FT " FT gene complement(152663..153112) FT /locus_tag="Nham_0134" FT /colour=13 FT CDS complement(153109..153447) FT /locus_tag="Nham_0135" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPG4 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=2e-76, 99% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MISKEKDSQASFEMIANDLINVGRLRFQAEEMMALMDRQHDAAKDMGYWRAMRYFDRRGTQMFYVVEYLNRCRAQAEKWA FT FGQSDTFDVEEALDDLNSFAFPFPEEDDEYDL* " FT gene complement(153109..153447) FT /locus_tag="Nham_0135" FT /colour=13 FT CDS complement(153447..155741) FT /locus_tag="Nham_0136" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPG3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MIITTVRHGRTKRDTKNLLAHLRKEIGQTSRVVKIGNVALSNADDVAVYMEMMRDGSFADVAMHHIAISPVKRMSPEQID FT DAVRRILVAFGAEDHPYVLFEHDGKARSAKAVDQHFHVMLGHIGPDGKALDDSGSFRKLEAVARSIEVDIGEDLTHSRRT FT AAVAAELRAMGRDDVADALQVPAELPRAAMSSTTRAMAARAGVDLPETQAAVRAAWTAADNAVAFRSALAEQRLEVRPGK FT KAGVFVVAAGDVEIGALDRIVRMKRGEVAARMEKNENVRPAEAARKAEEPRRSDLLRSPGRQRILGESSALIAAARRSRE FT PGVESDRRVEGGFDSRNRDFGPSKSSPRAHRNHVRENLDVARLRRADFRALKAAAEAIASGRPDRSLHRRVAERAAVASF FT RSIDFADVGPIAMKMAAGRIPDQSDLETLKEVRMKLLKPARSLDLKTRLLADIAPRGFDVTQFSNDLHMVKVPSPGRATA FT RVMTRDGGWLEFDVRTRKPIRTWGNTGRASVLAQALARHLGTEVQHLAKTASVGANAEALHVVKLSEDKIKSLTMWWAAR FT GYVAVPASDGCWVDAGHARIRDTGAELEIHGGVTDEAVNAVLLKARDAWKGNITLDGHWTQAEQDRLWIAAQRQGITVEN FT CRPSQMIQTAWRREQDAGAKSVKTISAVRTEMVDAQDLLAGAMGDRNAIIRLRGNLQAFLAIYLDDDQRKELSGRTVADV FT IPQLNRFRQIGTAELEAWEKQTGRKFTPPKPDAEKRADENRLEM* " FT gene complement(153447..155741) FT /locus_tag="Nham_0136" FT /colour=13 FT CDS complement(155738..156100) FT /locus_tag="Nham_0137" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPG2 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=2e-58, FT 99% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VSGTEKRQKTTTTTLRLTPDERAAVVAAAAAQGLGPSSFARVVTLRAAGREAVPFRKQRDVLTAAVAPLLGEAGRIGSNV FT NQMARHAHIGGRVDPAALDALRIEVEALTRAVMALRETAA* " FT gene complement(155738..156100) FT /locus_tag="Nham_0137" FT /colour=13 FT sig_peptide complement(155978..156100) FT /colour=11 FT /locus_tag="Nham_0137" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.881) with cleavage site probability 0.868 at FT residue 41" FT CDS complement(156339..156626) FT /locus_tag="Nham_0138" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPG1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-48, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTSFLLPSSQVKNRKLQMRIDDLRFEYKPDIFGFIADHCGIDLVIQPLRGGFAVEIVDGIGVHPLGSFPSERWAKVAALKAAEKVSGRIDGSRNG*" FT gene complement(156339..156626) FT /locus_tag="Nham_0138" FT /colour=13 FT CDS complement(156793..158691) FT /locus_tag="Nham_0139" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPG0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'gka:GKP04 category=Unassigned, FT evalue=3e-15, 28.977273% identity hit'" FT /note="COGs: 'evalue=5e-04 score=40.2 category=K FT group=COG2390 Transcriptional regulator contains sigma FT factor-related N-terminal domain' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MVAPALACVNDKPAKTSLPRFRFVDNTERRAFGPAEHIRAVHPPNAQGTRLRRGFVVWGQKGRWTDEKGRERAWKTWSDP FT VGGNAECAAEKFIENGKHRTADDLYFSMQAFKRPNCRKIWNLAAIGCAYVDIDYKETRWKGRDPRAVLTAVLFALDDARM FT PPPCFVMDSGSGLHLVWPHNLVTPKALPRWNLMQDRIVETLKLFGADPAAKDAARVLRLSGSWNPNATRKDPARGLVHLI FT WIQGDELAKPYRYDFDELADEILPMTRAEIVSLRAERAKRRAESKPKSRKGRKPAARRDSASYAEAVLEDLHRLRQHRYR FT STSGRLPAGQRDNWLFCAAMALSWITPAPALQRQIEAIAEQVSSWRGREARSRMGSIIKRAQDAAAGKTIEFDGKEVDPR FT YRMKAETIIKWLAIEEAEMRAAGLRVLLSPDVRRERKTLDARDRRKTNGATSHDDKRTTRIELGKRATWMHVRSGLTYAE FT IAAELGVSKATIGKAIDEAHHASLPTSENASGIRRAAIRAVYGGITPPKGGLPVPRGTGCLHPARTEPEKQPTTSGGGTA FT PPRKRTTAASGGGTGAKARKSAQRSQAGQRTGGMRKVASTSARHGQSDERHVPDVSMAITNWVPPRFLRRTG* FT " FT gene complement(156793..158691) FT /locus_tag="Nham_0139" FT /colour=13 FT CDS complement(158977..160173) FT /locus_tag="Nham_0140" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPF9 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPHKLHTELPSELEPVREAACRALGSVKPATASTPADKDFLFDAKRTNAGRKLPAQHLVYFVLVDLLGYRDLGRSEKLAW FT SIPIDFNGRAFLIEHRKFGVGVFAADLDRDEADAQQIVNHIHKAVKAARPFFDWLAARAIDESAINVTNKSASLFDRFVF FT LRDGYHLKADDAEARKDERIVKTGKSIDGGEWQTFSFPASRLRTEAKWLGLAAIEAFFSWTEHVLIHVGILRGVLTSANE FT VTSAAEANWSTKFKLAFDLADEHSKKLYDELLVVRKELRNFAAHGSFGKLGEAFHFHSSAGAVPVLLPDPIGSRKFTLGE FT PSPYDLQHALRTIEKFIVHLWEGPRAPARIYIQEYELPLILTMTHDGTYRSAMTSIEEMTLFADHLSGQIDRAGDMDW* FT " FT gene complement(158977..160173) FT /locus_tag="Nham_0140" FT /colour=13 FT CDS complement(160184..160771) FT /locus_tag="Nham_0141" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPF8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-109, 99% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="LIYEYSAQNHDWDLTLHAAAELIKAGLIADKKPRTGTLSMGFSFFTGGMVLSFAAIESFSASVAFSMRSHERFSGFDFQR FT YRNARRFWDKMEMLMSVAGIEIDKGNGLFQYIGQMQEWRNLVTHASPYEIEPTEIDNTTSAPGKLHEKKWRLEYTRMADA FT ENAKKFYGTALNFINLVTEQTGIDPRASAKFRPMA* " FT gene complement(160184..160771) FT /locus_tag="Nham_0141" FT /colour=13 FT misc_feature complement(160583..160648) FT /colour=11 FT /locus_tag="Nham_0141" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(160829..161731) FT /locus_tag="Nham_0142" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPF7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-170, 100% FT identity hit'" FT /note="KEGG top hit: 'dar:Daro_2205 category=Unassigned, FT evalue=6e-15, 28.017241% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MAEENEAQAHRAQLSEHHRLGRNLLHAQTRAIDALIHELHALDSARENEAIRVPLLMLQAVGVSVHSVLTLTHQRDMSIR FT DCFGIARSAVETAVNAAFIAVSGEPMAKRAVRHMRQKRWRDLRRQGRVGKHNITVSRDIGIEMDHLPGVREALEEFTNKR FT GEEVRSWTPENLESRITVISNRHGRAGLCLGAASFSVYRPASELLHGTYYGVNLFWQGSRDVPARGQEEFDELWVTEHFV FT TLLTALFFAASGAIDAISAVHMLAGHSERQDDLSRQLSVLVEEMGKNDQDDEHDFCTAEL* FT " FT gene complement(160829..161731) FT /locus_tag="Nham_0142" FT /colour=13 FT CDS complement(161894..163591) FT /locus_tag="Nham_0143" FT /product="Recombinase" FT /note="PFAM: Resolvase-like: (0.001) Recombinase: FT (2.6e-29)" FT /note="SPTR top hit: 'Q3PPF6 Resolvase, FT N-terminal:Recombinase. Nitrobacter hamburgensis X14., FT evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'dde:Dde_2774 category=Unassigned, FT evalue=2e-83, 40.170940% identity hit'" FT /note="COGs: 'evalue=7e-11 score=62.8 category=L FT group=COG1961 Site-specific recombinases DNA invertase Pin FT homologs' " FT /note="InterPro IPR006119:IPR011109" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="LRWQKLKKVYSYIRFSTPEQAKGDSLRRQIDNARQWCSERGLVMDESLRDLGISAYTGTNRTTGALRSFLDLVESGKIPK FT GSILLVESLDRLSREAVIDAASRLFDLIRSGITIVTLVDGQEYSAERLNNDWSPLIVSIAVMARAHEESRTKGKRVGEAW FT AKKKQAAREEGRPLTRRCPAWIQIANKKYEVIPEKAQIVQRIFRMAIEGHGSRTILKALNSDGIPTFMVSKKKQNNGWQT FT SSLRRLLTSRTVLGEYQPHVGRHWARKPEGDPVKGFYPAIIDEATFWRAQSAMESRRGRGGRKGEGVAHLLQGLAKCGDC FT GSAMHIINKGPLPKGGTYFECSAARRKFECSNTERWRVDRIEARLLKALTYIDVDAVVFGEQRDEVSDKVDILQAKLADA FT EQRRKRLIVLVESGDDAAAERFQTVAAEVKHIKGELTKATKEAAKTAADPGVKAALINAIDLSQLMTVVADRTRYEYRVR FT LAHQMRKLVQIVEFHSQEGATARLIPQLNLPPGRVPWAAYGFETRSWLIWLNSDDVHGLDFFAPDPEMIAQDTPAPNFEL FT RGRRG* " FT gene complement(161894..163591) FT /locus_tag="Nham_0143" FT /colour=2 FT CDS complement(163628..164275) FT /locus_tag="Nham_0144" FT /product="Mg chelatase-related protein" FT /note="SPTR top hit: 'Q3PPF5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-115, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0118 EC=6.6.1.1 FT category=Unassigned, evalue=1e-107, 93.457944% identity FT hit'" FT /note="COGs: 'evalue=3e-64 score=238 category=O FT group=COG0606 ATPase with chaperone activity' " FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MVQRVSTVAFEGIEGRVVDVQVQVAPGLPAFNIVGLPDKAVSEARERVRAALIASGLALPARRITVNLAPADLPKEGSHY FT DLPIALGLMAAIGAIPSDALSGFSVLGELGLDGSIAAVAGVLPAAISANARDEGLICPAACGAEAAWASPDIQIVAACSL FT IQIANHFKGTQVLSRPQPRIHEPQGALLDLRDIKGQESAKRALEIAAAGGHHLLR* " FT gene complement(163628..164275) FT /locus_tag="Nham_0144" FT /colour=9 FT CDS complement(164375..165316) FT /locus_tag="Nham_0145" FT /product="glutathione synthetase" FT /EC_number="6.3.2.3" FT /note="TIGRFAM: glutathione synthetase: (4.4e-158)" FT /note="PRIAM: Glutathione synthase" FT /note="PFAM: glutathione synthetase-like: (6.1e-41) FT glutathione synthetase, ATP-binding: (3e-110)" FT /note="SPTR top hit: 'Q3PPF4 Glutathione synthetase, FT prokaryotic (EC 6.3.2.3). Nitrobacter hamburgensis X14., FT evalue=1e-177, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0117 EC=6.3.2.3 FT category=Unassigned, evalue=1e-163, 92.012780% identity FT hit'" FT /note="COGs: 'evalue=1e-61 score=230 category=J FT group=COG0189 Glutathione synthase/Ribosomal protein S6 FT modification enzyme (glutaminyl transferase)' " FT /note="InterPro IPR004215:IPR004218:IPR006284:IPR011761" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MKLKIAVQMDPIARINVRGDSTFALLLEAQRRGHAVSYYTPDKLSLRGKDLVAPAQSLTVRDQDGDHFTLGEATRAYLES FT FDVVLLRQDPPFDLAYITTTHLLERIHPKTLVVNDPASVRDAPEKLFVMDFPELMPPTLISRDLDEISSFRAEHGAVVMK FT PLHGYGGAAVFRVMPQDMNFGSLFDMFSVTFREPWVIQRFLPEVKHGDKRIILVDGEFAGAVNRVPAADDLRSNMVRGGA FT AQATDLTPREREICERIGPALRERGLLFVGIDVIDGNLTEINVTSPTGIRAIAAFGGPDVAAKIWDRIEAKRS* FT " FT gene complement(164375..165316) FT /locus_tag="Nham_0145" FT /colour=7 FT CDS complement(165366..165773) FT /locus_tag="Nham_0146" FT /product="protein of unknown function UPF0102" FT /note="PFAM: protein of unknown function UPF0102: FT (3.7e-26)" FT /note="SPTR top hit: 'Q3PPF3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=5e-70, 100% identity FT hit'" FT /note="KEGG top hit: 'bja:bll0669 category=Unassigned, FT evalue=3e-54, 82.307692% identity hit'" FT /note="COGs: 'evalue=4e-24 score=103 category=L FT group=COG0792 endonuclease distantly related to archaeal FT Holliday junction resolvase' " FT /note="InterPro IPR003509" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MTAGKGAPRGDARIAAPERVAAFRTGLSAESRAAAYLIAKGYRILARRFRTPHGEIDIVARRRQLLAFVEVKARRSLDEA FT AYAVTPRQQQRIIGAAQVWLMTHPEHAAFELRFDAMLIAPRRLPRHLLGAFDAST* " FT gene complement(165366..165773) FT /locus_tag="Nham_0146" FT /colour=2 FT CDS complement(165770..166714) FT /locus_tag="Nham_0147" FT /product="Protein of unknown function UPF0011" FT /note="TIGRFAM: Protein of unknown function UPF0011: FT (2.2e-69)" FT /note="PFAM: Uroporphyrin-III C/tetrapyrrole FT (Corrin/Porphyrin) methyltransferase: (1.1e-41)" FT /note="SPTR top hit: 'Q3PPF2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-171, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0115 category=Unassigned, FT evalue=1e-138, 83.818770% identity hit'" FT /note="COGs: 'evalue=8e-81 score=294 category=R FT group=COG0313 methyltransferases' " FT /note="InterPro IPR000878:IPR008189" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MRAKSASLKPDTETPGIRTFSIAGHQLVAPRAMPGLHLVATPIGNLGDITLRALETLAGVDIIACEDTRITRRLTDRFSI FT TGVLKPYHDHNASTARPKILEQLAQGASIALVSDAGTPLISDPGFKLVREVCAAGHQVIALPGPSSVLAALAVAALPTDR FT FFFEGFLPSKETARRTRLAELAQIDATLVMFESGNRIRDSLRDLAAILGNRDAAICRELTKLHEDIRRATLVELAQTAAM FT LETRGEFVLVVGPPPAGAGMMSSADLDNLLLASLKENSVKDSVARAVEISCRPRREVYARALELAGQNRAKDDK* FT " FT gene complement(165770..166714) FT /locus_tag="Nham_0147" FT /colour=11 FT CDS 167003..168214 FT /locus_tag="Nham_0148" FT /product="Extracellular ligand-binding receptor" FT /note="PFAM: Extracellular ligand-binding receptor: FT (8.7e-05)" FT /note="SPTR top hit: 'Q3PPF1 Extracellular ligand-binding FT receptor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0190 category=Unassigned, FT evalue=0.0, 85.679012% identity hit'" FT /note="COGs: 'evalue=8e-20 score=92.1 category=E FT group=COG0683 ABC-type branched-chain amino acid transport FT systems periplasmic component' " FT /note="InterPro IPR001828" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MARIRMTDPFKPKPERPGATRRAVLGFVVGAPLLGACSGIQQTLTGSSSQPAPSGPAQQAVTIGTGQVKVGLVLPLSAAG FT NASIAAQSMKNAAEMALSEFQNPNIQLLIKDDAGSAQGAQQGAQQALDEGAEVILGPLFAASVPAVAQAARTRGTSVIAF FT STDSSVAGRGVYLLSFLPESDVNRIVEYAVSTGKRSFAAMVPENAYGNVVEAAFKQTVGRRGGRIVAFEKYGADRAGAAR FT KVAQSLRSADALLIADDGDAVVSVADALTAAGANLRNVQLLGTGLWDNPRVFASAALQGGLYAAPDPSGFRSFAGRYRAK FT YGGEPVRTATLAYDAVALVAALARTQGAQRFAAETLTNPSGFAGIDGLFRFRSDGTNQRGLAVMRVASGGGEPIAGSPKS FT FGA* " FT gene 167003..168214 FT /locus_tag="Nham_0148" FT /colour=10 FT CDS complement(168230..169390) FT /locus_tag="Nham_0149" FT /product="Putative oxygen-independent coproporphyrinogen FT III oxidase" FT /note="TIGRFAM: Putative oxygen-independent FT coproporphyrinogen III oxidase: (2.6e-73)" FT /note="PFAM: Radical SAM: (1.4e-21) HemN-like: (1.4e-26)" FT /note="SMART: Elongator protein 3/MiaB/NifB: (1.8e-48) " FT /note="SPTR top hit: 'Q3PPF0 Putative oxygen-independent FT coproporphyrinogen III oxidase. Nitrobacter hamburgensis FT X14., evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0191 category=Unassigned, FT evalue=0.0, 90.673575% identity hit'" FT /note="COGs: 'evalue=1.0e-101 score=363 category=H FT group=COG0635 Coproporphyrinogen III oxidase and related FT Fe-S oxidoreductases' " FT /note="InterPro IPR004559:IPR006638:IPR007197:IPR010723" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="LTSADPTTAFGVYVHWPFCLSKCPYCDFNSHVRHAPIDEERFVRAFTREIETTAARSPGREVSSIFLGGGTPSLMQPQTV FT GAILEAIGKNWRVADNAEITLEANPTSVEATRFRGYRAAGVNRVSLGVQALDDASLKALGRLHTAREALDAVAIARSVFD FT RYSFDLIYARPDQTPAMWSEELQRAISEAAEHLSLYQLTIEQGTPFFGLHAAGKLKTPDEAISRALYDVTQEICARHGLP FT AYEISNHARPGAECRHNLVYWRGQEYAGIGPGAHGRLDIDGDRHAIATEKRPEAWLMRVEAIGNGIVADDLLNSEERADE FT FLLMGLRLREGIDPQRYAALSGRLLDPRRIAILREEGAIAISPDGRLRVTQDGFPVLDAVVADLAA* FT " FT gene complement(168230..169390) FT /locus_tag="Nham_0149" FT /colour=12 FT CDS complement(169377..170012) FT /locus_tag="Nham_0150" FT /product="Ham1-like protein" FT /note="PFAM: Ham1-like protein: (4.2e-57)" FT /note="SPTR top hit: 'Q3PPE9 Ham1-like protein. FT Nitrobacter hamburgensis X14., evalue=1e-118, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:bll0673 category=Unassigned, FT evalue=1e-104, 86.729858% identity hit'" FT /note="COGs: 'evalue=6e-55 score=206 category=F FT group=COG0127 Xanthosine triphosphate pyrophosphatase' " FT /note="InterPro IPR002637" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MHRRIAGKLVIATHNPGKLAEMRELLAPYGIEAVSAGELGLGEPEETGDDFRANATIKAVAAARSAKLPAFADDSGLVVD FT ALDGAPGIYSARWAGETKDFSAAMTRIERLLQERGATTAEKRKAHFVSALCVAWPDGHLEEVEARVHGTLVWPPRGTAGF FT GYDPAFQPDGHTRTFGEMTSIEKHGLPPRGLGLSHRARAFVKLAEMSLDQR* " FT gene complement(169377..170012) FT /locus_tag="Nham_0150" FT /colour=16 FT CDS complement(170161..170874) FT /locus_tag="Nham_0151" FT /product="ribonuclease PH" FT /EC_number="2.7.7.56" FT /note="TIGRFAM: ribonuclease PH: (6.8e-165)" FT /note="PRIAM: tRNA nucleotidyltransferase" FT /note="PFAM: 3' exoribonuclease: (3.9e-52)" FT /note="SPTR top hit: 'Q3PPE8 Ribonuclease PH (EC FT 2.7.7.56). Nitrobacter hamburgensis X14., evalue=1e-131, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0193 rph EC=2.7.7.56 FT category=Unassigned, evalue=1e-126, 94.514768% identity FT hit'" FT /note="COGs: 'evalue=4e-76 score=277 category=J FT group=COG0689 RNase PH' " FT /note="InterPro IPR001247:IPR002381" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MRPSRRAPDELRAVSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLERTRREASA FT GKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGAWVALADCIGWMKARNMIKTSVLRDNVA FT AVSCGIYNGTPVLDLDYAEDSEADTDANFVMTGDGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQKMAVA* FT " FT gene complement(170161..170874) FT /locus_tag="Nham_0151" FT /colour=7 FT CDS 171055..172143 FT /locus_tag="Nham_0152" FT /product="negative regulator of class I heat shock FT protein" FT /note="TIGRFAM: heat-inducible transcription repressor FT HrcA: (5.6e-126)" FT /note="PFAM: Negative regulator of class I heat shock FT protein: (2e-95)" FT /note="SPTR top hit: 'Q3PPE7 Negative regulator of class I FT heat shock protein. Nitrobacter hamburgensis X14., FT evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0194 category=Unassigned, FT evalue=0.0, 95.013850% identity hit'" FT /note="COGs: 'evalue=2e-94 score=339 category=K FT group=COG1420 Transcriptional regulator of heat shock FT gene' " FT /note="InterPro IPR002571" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="LVHHDPIGLIAPNTGLAQLNERSRDIFRQIVESYLATGEPVGSRNISRLITMPLSPASVRNVMSDLEQLGLIYAPHTSAG FT RLPTEFGLRFFVDALMQVGDLTETERQSIQTQLASVGKAQSVEAALDQALTRLSGLTRAAAVVLTAKSNVRLKHIEFVRL FT EPEKALVVLVAEDGQVENRVLTLPSGVPASALTEASNFLNARIRGRTLAEARLELETALTQSKAELDQLTQKVIAAGIAS FT WSGGDSDDRQLIVRGHANLLEDLHALEDLERVRLLFDDLETKRGVIDLLGRAERADGVRIFIGSENKLFSLSGSSTIIAP FT YNDGAGHIVGVLGVIGPTRLNYARVIPMVDYAARIVSQMLGG* " FT gene 171055..172143 FT /locus_tag="Nham_0152" FT /colour=6 FT CDS 172225..172836 FT /locus_tag="Nham_0153" FT /product="GrpE protein" FT /note="PFAM: GrpE protein: (1.2e-69)" FT /note="SPTR top hit: 'Q3PPE6 GrpE protein. Nitrobacter FT hamburgensis X14., evalue=1e-110, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0195 category=Unassigned, FT evalue=4e-96, 88.324873% identity hit'" FT /note="COGs: 'evalue=4e-43 score=167 category=O FT group=COG0576 Molecular chaperone GrpE (heat shock FT protein)' " FT /note="InterPro IPR000740:IPR002197" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MREGCVMTDSDGKSDNSGDPAPEAEPVVSKPYIMPDDPEEGSLEALAKEVAEAKDRMLRTLAEMENLRKRTAREVSDART FT YGISGFARDVLDIADNLQRALDAVPTEARAAADPGLKALIEGVELTERSLHNALEKHGVKKFDPAGEKFDPNVHQAMYEI FT PDPSVPVGTIAQVIQAGYTIGERVLRPALVGVAKGGAKAAASE* " FT gene 172225..172836 FT /locus_tag="Nham_0153" FT /colour=9 FT CDS complement(173001..173939) FT /locus_tag="Nham_0154" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPE5 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=1e-174, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0196 category=Unassigned, FT evalue=1e-141, 79.099678% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRHLTQLIAVLCVLSGVAPAFADDPVYAPGTRIGLVPLIGLSPSKTFPGFETADHRVKVVVAELPAAAFKDVENLAKSDT FT AGAQVIKPQSLETASGQGYFIIETAKNGNDNVRRYSMVVSGGTFSGYIAAQVSENVEKIYSDQAMQKMFATVALRKEVPV FT EEQLGLLPFKLTELSSFKMIRTLAPGAAILLSDAETDDDIDGKAFLIVNLVGSAPERPDDRGRFARDIAATIPNLRDGRI FT TMSEPMRINGSPGFETRIDATNTQTNTPVTVVQWLVFGSGNTAMRLIGSTPRDGWSAVFPRFRAVRDGIRPH* FT " FT gene complement(173001..173939) FT /locus_tag="Nham_0154" FT /colour=13 FT sig_peptide complement(173871..173939) FT /colour=11 FT /locus_tag="Nham_0154" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 1.000 at FT residue 23" FT CDS 174596..176494 FT /locus_tag="Nham_0155" FT /product="Chaperone DnaK" FT /note="TIGRFAM: Chaperone DnaK: (0)" FT /note="PFAM: Heat shock protein 70: (0)" FT /note="SPTR top hit: 'Q3PPE3 Heat shock protein Hsp70. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0197 dnaK FT category=Unassigned, evalue=0.0, 98.086124% identity hit'" FT /note="COGs: 'evalue=0.0 score=710 category=O FT group=COG0443 Molecular chaperone' " FT /note="InterPro IPR001023:IPR012725:IPR013126" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MGKVIGIDLGTTNSCVAVMDGKTPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTIFAVKRLIGRRYDDP FT TVEKDKHLVPYKIAKAGNGDAWVEVDGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKI FT AGLEVLRIINEPTAAALAYGLDKAKQGTIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVSYLADEFQ FT KEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADQSGPKHLTMKLTRAKFEALVDDLVQKTIEPCRKALK FT DAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLFGKEPHKGVNPDEVVAIGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLG FT GVFTRIIDRNTTIPTKKSQVFSTAEDSQNAVTIRVFQGEREMAADNKILGQFDLMGIPPAPRGMPQIEVTFDIDANGIVN FT VSAKDKATGKEQQIRIQASGGLSEADIDKMVKDAEANAIEDKKRREAVDAKNHADSLVHSTEKALAEHGSKIEDSERRAI FT EDAVSDLKEALKGDDAEAIKAKTNTLAQASMKLGEAMYKQQAEADAAKDAAKDDVVDAEFTEVDDDKNKKSA* FT " FT gene 174596..176494 FT /locus_tag="Nham_0155" FT /colour=9 FT CDS 176650..177783 FT /locus_tag="Nham_0156" FT /product="Chaperone DnaJ" FT /note="TIGRFAM: Chaperone DnaJ: (1.9e-188)" FT /note="PFAM: DnaJ central region: (9.2e-34) heat shock FT protein DnaJ-like: (1.1e-36) chaperone DnaJ-like: FT (3.7e-74)" FT /note="SPTR top hit: 'Q3PPE2 DnaJ central region:Heat FT shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0198 dnaJ FT category=Unassigned, evalue=0.0, 92.328042% identity hit'" FT /note="COGs: 'evalue=1.0e-133 score=467 category=O FT group=COG0484 DnaJ-class molecular chaperone with FT C-terminal Zn finger domain' " FT /note="InterPro FT IPR001305:IPR001623:IPR002939:IPR003095:IPR012724" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSTKRCYYETLEVDRNADDSKLKAAFRKLAMKWHPDRNPGDATSEMRFKEINEAYEVLKDGDKRAAYDRFGHAAFEHGGM FT GGGPGFGAGFASSFSDIFEDLFGMAGQRGRGGGRERGADLRYNMEISLDEAFQGKTAQVEIPVSVTCESCSGTGAKAGTK FT PKNCAMCGGAGRIRQAQGFFTLERTCPGCQGRGQMIEDPCPSCGGTGRVNRERSLSVNVPAGVEDGTRIRLAGEGEAGIR FT GGPPGDLYIFLSLAPHEFFQRDGADLHCRVPISMVTAALGGEFEVPTIDKSKTKVRVPSGTQSGRRFRIASKGMPVLRSR FT QTGDMYVQVVVETPQNLTKKQQELLAEFEKLSSGATQPEAAGFFTKVKDFFGTRASP* FT " FT gene 176650..177783 FT /locus_tag="Nham_0156" FT /colour=9 FT CDS 177877..178479 FT /locus_tag="Nham_0157" FT /product="Ribosomal RNA adenine methylase transferase" FT /note="SMART: Ribosomal RNA adenine methylase transferase: FT (7.6e-06) " FT /note="SPTR top hit: 'Q3PPE1 Ribosomal RNA adenine FT methylase transferase. Nitrobacter hamburgensis X14., FT evalue=1e-111, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0199 category=Unassigned, FT evalue=1e-105, 94.974874% identity hit'" FT /note="COGs: 'evalue=2e-38 score=152 category=I FT group=COG3963 Phospholipid N-methyltransferase' " FT /note="InterPro IPR000051:IPR001737" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MPLQLSARAPKKPLRLDDEVRFLRSWFEKPLHMGAVMPSGRILARTMAQYVDVGSTDPVVELGPGTGAITNALIEHGVDQ FT KRLVLIEYDPGFCALLRDRYPQATVVQGDAYTLRDSLWNVLSARASAIVSGLPLVTKPMLTRLKLIRDAFAALAPGAPFV FT QFTYSVVPPIPKSLPGISTEASERIWMNLPPARVWVYRRG* " FT gene 177877..178479 FT /locus_tag="Nham_0157" FT /colour=5 FT CDS 178829..179698 FT /locus_tag="Nham_0158" FT /product="Dihydrodipicolinate reductase" FT /EC_number="1.3.1.26" FT /note="PRIAM: Dihydrodipicolinate reductase" FT /note="PFAM: dihydrodipicolinate reductase: (9.2e-48)" FT /note="SPTR top hit: 'Q3PPE0 Dihydrodipicolinate reductase FT (EC 1.3.1.26). Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0201 EC=1.3.1.26 FT category=Unassigned, evalue=1e-140, 89.160839% identity FT hit'" FT /note="COGs: 'evalue=5e-81 score=294 category=E FT group=COG0289 Dihydrodipicolinate reductase' " FT /note="InterPro IPR000846:IPR011770" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="LPGNVAPAIPGEYFEDSVVADMRLIVAGAGGRMGRALVRAIAESGGAVLAGALEPPGSELIGKDTGVLAGLPANGIEVSA FT DLWSLSAHADGILDFTVPAATIANVAIAAERGLVHVIGTTGLSASDMAVIKSVTSRTVVVQSGNMSLGINLLAALVKRMA FT QSLDESFDIEILEMHHRAKIDAPSGTALMLGQAAADGRKIVLDQHAARGRDGITGARKSGDIGFASLRGGTVSGDHSVIF FT AGPYERITLSHHAEDRMIFAHGALKAAKWAHGKTPGLYSMADVLGLGDL* " FT gene 178829..179698 FT /locus_tag="Nham_0158" FT /colour=10 FT CDS 179740..180363 FT /locus_tag="Nham_0159" FT /product="phosphoglycerate mutase 1 family" FT /note="TIGRFAM: phosphoglycerate mutase 1 family: FT (2.3e-78)" FT /note="PFAM: Phosphoglycerate mutase: (8.9e-47)" FT /note="SPTR top hit: 'Q3PPD9 Phosphoglycerate mutase 1. FT Nitrobacter hamburgensis X14., evalue=1e-114, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0202 EC=5.4.2.1 FT category=Unassigned, evalue=1e-108, 93.719807% identity FT hit'" FT /note="COGs: 'evalue=3e-77 score=280 category=G FT group=COG0588 Phosphoglycerate mutase 1' " FT /note="InterPro IPR001345:IPR005952:IPR013078" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MSERLLVLVRHGQSEWNLKNLFTGWKDPDLTELGVTEAKDAGRKLKEQGFAFDIAFTSVLIRAEHTLDLVLEELGQTGIP FT VRKDLALNERDYGDLAGLNKDEARKKWGEEQVLIWRRSYDVPPPGGESLKDTLARTLPYFVQEILPCVLRGECTLVAAHG FT NSLRALVMVLEKLSPEQILKRELATGAPVIYRLNADATVASKLDLAA* " FT gene 179740..180363 FT /locus_tag="Nham_0159" FT /colour=4 FT CDS complement(180499..181443) FT /locus_tag="Nham_0160" FT /product="transcriptional regulator, AraC family" FT /note="TIGRFAM: methylated-DNA--protein-cysteine FT methyltransferase: (4.4e-39)" FT /note="PFAM: helix-turn-helix, AraC type: (0.22) FT methylated-DNA-[protein]-cysteine S-methyltransferase: FT (4.9e-37)" FT /note="SPTR top hit: 'Q3PPD8 FT Methylated-DNA-[protein]-cysteine S-methyltransferase. FT Nitrobacter hamburgensis X14., evalue=1e-180, 99% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0203 EC=2.1.1.63 FT category=Unassigned, evalue=1e-149, 82.802548% identity FT hit'" FT /note="COGs: 'evalue=9e-39 score=154 category=L FT group=COG0350 Methylated DNA-protein cysteine FT methyltransferase' " FT /note="InterPro IPR000005:IPR001497:IPR001680" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="VAATQPPPYIRVMMTFAKSFAPNDPRLTLPGAESAALRDYDAVRRAIAFISANWRTQPTIAAIADAAGVAPDELHHLFRR FT WAGLTPKAFMQALTLDHARGLLRKSASVLDAALDSGLSGPGRLHDLFVTHEAMSPGEWKNGGAGMRLAFGFHPSPFGTAI FT VIASSRGLAGLAFADAGEEQTALADMKRRWPNATYVEDHAGTAALAQRVFDTKLWRPDQPLRVVLIGTDFEVRVWETLLR FT IPMGKATTYSSIAANVNSPKASRAVGAAVSKNPVSFVVPCHRVIGKSGALTGYHWGITRKQAMLGWEAGQVGVE* FT " FT gene complement(180499..181443) FT /locus_tag="Nham_0160" FT /colour=2 FT CDS complement(181569..182093) FT /locus_tag="Nham_0161" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPD7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=8e-95, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0204 category=Unassigned, FT evalue=1e-75, 78.735632% identity hit'" FT /note="COGs: 'evalue=2e-36 score=145 category=S FT group=COG5488 Integral membrane protein' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTLDNNLTNPELAEQTLFSALLTPHRSLTQAGFIVLMTIVTVVSFVAGMVFLMMGAWPVFLFFGLDALMIYWAFRINFLR FT ARATEEIFITHFELRVRRTSHRGHIVEWVSNPLWVQLDQKIHEEYGIERLYLVSRGRRISIASFLGPDEKVSFVEALSAA FT LQLAKRGPTYNPLS* " FT gene complement(181569..182093) FT /locus_tag="Nham_0161" FT /colour=13 FT misc_feature complement(order(181857..181922,181935..182000)) FT /colour=11 FT /locus_tag="Nham_0161" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 182236..183024 FT /locus_tag="Nham_0162" FT /product="endonuclease III" FT /note="TIGRFAM: endonuclease III: (2.5e-109)" FT /note="PFAM: helix-hairpin-helix motif: (0.008) HhH-GPD: FT (6.9e-16)" FT /note="SPTR top hit: 'Q3PPD6 Endonuclease III/Nth. FT Nitrobacter hamburgensis X14., evalue=1e-172, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0205 category=Unassigned, FT evalue=1e-113, 82.539683% identity hit'" FT /note="COGs: 'evalue=7e-76 score=277 category=L FT group=COG0177 EndoIII-related endonuclease' " FT /note="InterPro IPR000445:IPR003265:IPR004035:IPR005759" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="LGQAPAAKPRKRAATPEAGAASKAILPAAKRPAKPARRSARGSAAPTPPLRPWTVAEIREAFVRFRNANPEPKGELEHLN FT PYTLLVAVVLSAQATDAGVNKATRALFAVADTPARMLALGEEKVRDHIKTIGLYRNKARNIIALSEKLLADFNGEVPRSR FT AGIESLPGAGRKTANVVLNMAFGEHTMAVDTHVFRVGNRTGMAPGKTPLEVELGLERVIPDEFMLHAHHWLILHGRYTCL FT ARSPRCAVCLINDLCRWPEKTI* " FT gene 182236..183024 FT /locus_tag="Nham_0162" FT /colour=2 FT CDS complement(183215..184915) FT /locus_tag="Nham_0163" FT /product="ribosomal protein S1" FT /note="TIGRFAM: ribosomal protein S1: (5.4e-234)" FT /note="PFAM: RNA binding S1: (3e-12)" FT /note="SPTR top hit: 'Q3PPD5 Ribosomal protein S1. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0206 category=Unassigned, FT evalue=0.0, 97.345133% identity hit'" FT /note="COGs: 'evalue=1.0e-163 score=569 category=J FT group=COG0539 Ribosomal protein S1' " FT /note="InterPro IPR000110:IPR003029" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MASTDTYNPSRDDFAAMLDESFAGGSLQESSVIKGKVVAIEKDMAVIDVGLKTEGRVALREFAGPGRENSLKVGDEVEVF FT LDRIENALGEAVLSRDKARREESWGKLEKAFQNNEKVHGVIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRDVGPLMNNT FT QPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHP FT TEVLAIGQTVKVKIIKINHETHRISLGMKQLLDDPWQGIEAKYPLNARYTGRVTNITDYGAFVELEPGIEGLIHVSEMSW FT TKKNMHPGKIVSTSQEVEVQVLEVDAVKRRISLGLKQTMRNPWEAFVEKHPVGSTVEGEVKNKTEFGLFLGLEGDVDGMV FT HLSDLDWKQPGEQVIDNFKRGDMVKAIVLDVDVEKERISLGVKQLEGDPFAEPGDVKKGAVVTCEVLEIKDGGIEVQIAG FT TEFQTFIKRSELARDRNDQRSERFAVGEKVDARVIQFDRKARKVQVSIKALEVAEEKEAIAQYGSSDSGATLGDILGTAL FT KQRTDK* " FT gene complement(183215..184915) FT /locus_tag="Nham_0163" FT /colour=7 FT CDS complement(185323..185952) FT /locus_tag="Nham_0164" FT /product="cytidylate kinase" FT /EC_number="2.7.4.14" FT /note="TIGRFAM: cytidylate kinase: (2.2e-53)" FT /note="PRIAM: Cytidylate kinase" FT /note="PFAM: cytidylate kinase region: (7.7e-32)" FT /note="SPTR top hit: 'Q3PPD4 Cytidylate kinase (EC FT 2.7.4.14). Nitrobacter hamburgensis X14., evalue=1e-111, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0208 EC=2.7.4.14 FT category=Unassigned, evalue=1e-102, 91.747573% identity FT hit'" FT /note="COGs: 'evalue=2e-55 score=208 category=F FT group=COG0283 Cytidylate kinase' " FT /note="InterPro IPR003136:IPR011769:IPR011994" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MIIAIDGPAASGKGTLGKRLAHHYHFRHLDTGVIYRAVAKALLDAGADPADEALAVAAALELDPEKFGHPALKTQTVGEV FT ASVVSAFPRVREALLTFQRQFAAEPPGAVLDGRDIGTVICPEADVKIFVVADPVVRARRRTLEARSRGEEADEAVVLADI FT LKRDERDRNRPIAPLKAAADAHVLDNSNLDIEAGLKAAIAIVEAVRAGR* " FT gene complement(185323..185952) FT /locus_tag="Nham_0164" FT /colour=16 FT CDS complement(185949..187298) FT /locus_tag="Nham_0165" FT /product="3-phosphoshikimate 1-carboxyvinyltransferase" FT /note="TIGRFAM: 3-phosphoshikimate FT 1-carboxyvinyltransferase: (8.3e-162)" FT /note="PFAM: EPSP synthase (3-phosphoshikimate FT 1-carboxyvinyltransferase): (1.5e-111)" FT /note="SPTR top hit: 'Q3PPD3 3-phosphoshikimate FT 1-carboxyvinyltransferase. Nitrobacter hamburgensis X14., FT evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0209 EC=2.5.1.19 FT category=Unassigned, evalue=0.0, 91.759465% identity hit'" FT /note="COGs: 'evalue=1.0e-106 score=379 category=E FT group=COG0128 5-enolpyruvylshikimate-3-phosphate synthase' FT " FT /note="InterPro IPR001986:IPR006264" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="LTHSGQPAPLEARKCQSLIGRVRVPGDKSISHRALILGALAVGETRIAGLLEGEDVLNTAKAMQALGAKVERRIDDKSGI FT VWSVRGVGTSGFATPEAPLDFGNSGTGCRLVMGAVAGCPIVATFDGDGSLRSRPMRRILDPLELMGARVTGESDGGRLPL FT TLAGARDPLPIVYRTPVASAQIKSAVLLAGLSAPGITTVIESEASRDHTELMLKHFGAQIVSVSDGTHGRKISLTGQPEL FT HGAAVTVPADPSSAAFPIVAALITEGSDIVLTDVMTNPLRTGLFATLREMGASIEESETRLDAGEPMAQLRVRASKLRGV FT EVPAARAPSMIDEYLVLAVAAAFAEGTTVMRGLHELRVKESDRLEAAAAMLRVNGVAVEIAGDDLIVEGRGRVPGGGLVT FT THMDHRIAMSALAMGCASDAPVKVDDTAFIATSFPDFVPMMRRLGADFA* " FT gene complement(185949..187298) FT /locus_tag="Nham_0165" FT /colour=10 FT CDS 187444..187857 FT /locus_tag="Nham_0166" FT /product="conserved hypothetical protein" FT /note="TIGRFAM: conserved hypothetical protein: (8.8e-57)" FT /note="SPTR top hit: 'Q3PPD2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=4e-71, 99% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0210 category=Unassigned, FT evalue=7e-62, 87.769784% identity hit'" FT /note="COGs: 'evalue=8e-11 score=59.6 category=S FT group=COG4530 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR012644" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VAKSELGTKRICPTTGKKFYDLNKTPVISPYTGEVVPIVVAPVRARGEAARAAAAAASASDASPEPAEAEGLVSLEEADA FT EENTGKVKKAVVPESEDDIEVDDTLDEDDDSTFIADEEEGDEDVTNIIGDVGDDEET* FT " FT gene 187444..187857 FT /locus_tag="Nham_0166" FT /colour=13 FT tRNA 188039..188114 FT /locus_tag="Nham_R0002" FT /gene="tRNA-Ala1" FT /note="anticodon GGC, Cove Score=87.23" FT /product="tRNA_Ala" FT /colour=8 FT CDS 188426..188857 FT /locus_tag="Nham_0167" FT /product="heat shock protein Hsp20" FT /note="PFAM: heat shock protein Hsp20: (1.8e-13)" FT /note="SPTR top hit: 'Q3PPD1 Heat shock protein Hsp20. FT Nitrobacter hamburgensis X14., evalue=2e-76, 100% identity FT hit'" FT /note="KEGG top hit: 'bja:bll0729 hspH FT category=Unassigned, evalue=3e-70, 93.706294% identity FT hit'" FT /note="COGs: 'evalue=1e-18 score=85.4 category=O FT group=COG0071 Molecular chaperone (small heat shock FT protein)' " FT /note="InterPro IPR002068" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSRVPSLSSPFLLGFDEIERALDRVVKGADGYPPYNIERCGCDRNNGQPERLRITLAVAGFTRDQLDVTIEENQLVIRGR FT QQDDKIRQYIHRGIAARHFQRTFVLAEGMLVLGADLKNGLLSVDLARPEAERIVKTIAINEHE* FT " FT gene 188426..188857 FT /locus_tag="Nham_0167" FT /colour=9 FT CDS 188963..189229 FT /locus_tag="Nham_0168" FT /product="protein of unknown function DUF1150" FT /note="PFAM: protein of unknown function DUF1150: FT (4.1e-47)" FT /note="SPTR top hit: 'Q3PPD0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=2e-42, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0212 category=Unassigned, FT evalue=3e-38, 88.636364% identity hit'" FT /note="COGs: 'evalue=1e-17 score=81.2 category=S FT group=COG5568 Uncharacterized small protein' " FT /note="InterPro IPR009531" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MREVSATLQPESLSIEALAQLGEGHIAYVKQVRSEDVPDLFPQAPKIAPGLMLFALHAADGTPIMLTDSREAAVASAWSNELQAVSVH*" FT gene 188963..189229 FT /locus_tag="Nham_0168" FT /colour=13 FT CDS 189495..191336 FT /locus_tag="Nham_0169" FT /product="dihydroxy-acid dehydratase" FT /EC_number="4.2.1.9" FT /note="TIGRFAM: dihydroxy-acid dehydratase: (0)" FT /note="PRIAM: Dihydroxy-acid dehydratase" FT /note="PFAM: dihydroxy-acid and 6-phosphogluconate FT dehydratase: (0)" FT /note="SPTR top hit: 'Q3PPC9 Dihydroxy-acid dehydratase FT (EC 4.2.1.9). Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0213 EC=4.2.1.9 FT category=Unassigned, evalue=0.0, 93.973941% identity hit'" FT /note="COGs: 'evalue=0.0 score=765 category=G FT group=COG0129 Dihydroxyacid dehydratase/phosphogluconate FT dehydratase' " FT /note="InterPro IPR000581:IPR004404" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MPAYRSRTSTHGRNMAGARGLWRATGMKNEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEKAGGVAKEFNTIAVD FT DGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNVPAVFVSGGPMESGKVNVNGKIR FT SVDLIDAMVAAADDSVSDADVEAIERSACPTCGSCSGMFTANSMNCLTEALGLALPGNGSVLATHADRKGLFVEAGHLIV FT DLARRYYEQDDARVLPRAIASFKAFENAMTLDISMGGSTNTVLHLLAAAYEGEVPFTMKDIDRLSRRVPVLCKVAPSVVD FT VHLEDVHRAGGIMGILGELDRAGLIDSSLPTVHSTSLKDGLERWDIKRTKSDSVRSFYLAAPGGVRTQVAFSQDKRFEEL FT DADRSSGCIRDAEHAFSKDGGLAVLYGNIARDGCIVKTAGVDDSILTFSGPARIFESQDAAVDAILTNRIQPGDVVLIRY FT EGPRGGPGMQEMLYPTSYLKSKGLGKQCALITDGRFSGGSSGLSIGHVSPEAAEGGAIGLVEEGDRIVFDIPNRKVHLDV FT SDAELERRRAAMEAKGDKAWKPAPRKRRVTMALKAYAAHATSAALGAVRVVKD* " FT gene 189495..191336 FT /locus_tag="Nham_0169" FT /colour=4 FT CDS complement(191721..192119) FT /locus_tag="Nham_0170" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPC8 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=5e-74, FT 100% identity hit'" FT /note="KEGG top hit: 'mlo:mlr0495 category=Unassigned, FT evalue=2e-24, 41.666667% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPSAKSILLICAFALTVMAPAGATDPRFIASLGKLDPQTRLEQICDLAAVKHIGKSGKLPKPDRAKSNVITPPRHHGDTI FT VANGGAFRSGGKWYAFSFKCKGSPDHLDVLSFTYRVGAMIPKSKWPEYGLWD* " FT gene complement(191721..192119) FT /locus_tag="Nham_0170" FT /colour=13 FT misc_feature complement(192048..192098) FT /colour=11 FT /locus_tag="Nham_0170" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(192048..192119) FT /colour=11 FT /locus_tag="Nham_0170" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.987 at FT residue 24" FT CDS complement(192484..192945) FT /locus_tag="Nham_0171" FT /product="PTS IIA-like nitrogen-regulatory protein PtsN" FT /note="TIGRFAM: PTS IIA-like nitrogen-regulatory protein FT PtsN: (2.8e-55)" FT /note="PFAM: phosphoenolpyruvate-dependent sugar FT phosphotransferase system, EIIA 2: (2.6e-13)" FT /note="SPTR top hit: 'Q3PPC7 PTS IIA-like FT nitrogen-regulatory protein PtsN. Nitrobacter hamburgensis FT X14., evalue=1e-78, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0179 ptsN EC=2.7.1.69 FT category=Unassigned, evalue=5e-76, 96.732026% identity FT hit'" FT /note="COGs: 'evalue=2e-31 score=128 category=T FT group=COG1762 Phosphotransferase system FT mannitol/fructose-specific IIA domain (Ntr-type)' " FT /note="InterPro IPR002178:IPR006320" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MMITDLVAPEAILPALKVNSKKQALQELAARAAELTGQNDRAIFEVLLRREKLGTTAVGYGVAIPHGKLQKLDKIFGLFA FT RLDRPIDFEAMDGQPVDLIFLLLAPEGAGADHLKALARIARLLRDQDIANKLRASRDAQAIYSVLALPPATVP* FT " FT gene complement(192484..192945) FT /locus_tag="Nham_0171" FT /colour=15 FT CDS complement(193196..193792) FT /locus_tag="Nham_0172" FT /product="sigma 54 modulation protein/ribosomal protein FT S30EA" FT /note="TIGRFAM: ribosomal subunit interface protein: FT (2.7e-15)" FT /note="PFAM: sigma 54 modulation protein/ribosomal protein FT S30EA: (3.9e-36)" FT /note="SPTR top hit: 'Q3PPC6 Sigma 54 modulation FT protein/ribosomal protein S30EA. Nitrobacter hamburgensis FT X14., evalue=1e-107, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0178 category=Unassigned, FT evalue=1e-97, 91.414141% identity hit'" FT /note="COGs: 'evalue=3e-16 score=78.7 category=J FT group=COG1544 Ribosome-associated protein Y (PSrp-1)' " FT /note="InterPro IPR003489" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTLRISGKSINVGEALRGRLNSRTDEVLRKYFDGKYSGHITLCKDGFGFRTDCALHLDSGVTLEAESNAADAYASADQAL FT LQIEKRLRRYKSRLKDRSARKIHATTEAVAVLDAPSYVIEAPNVDGEDEVTAFNPVIIAEAITSLRRLSVSEAVMELDFT FT GVPVLVFQHGSSGRVNVIYRRPDGNVGWIDPPAVNGSA* " FT gene complement(193196..193792) FT /locus_tag="Nham_0172" FT /colour=7 FT CDS complement(193849..195489) FT /locus_tag="Nham_0173" FT /product="sigma-54 (RpoN)" FT /note="PFAM: sigma-54 factor: (1.9e-24) sigma-54 factor, FT core-binding region: (8.5e-118) sigma-54, DNA-binding: FT (1.1e-113)" FT /note="SPTR top hit: 'Q3PPC5 Sigma-54 factor:Sigma-54 FT factor, core-binding region:Sigma-54, DNA- binding. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0177 category=Unassigned, FT evalue=0.0, 84.432234% identity hit'" FT /note="COGs: 'evalue=1.0e-129 score=457 category=K FT group=COG1508 DNA-directed RNA polymerase specialized FT sigma subunit sigma54 homolog' " FT /note="InterPro IPR000394:IPR007046:IPR007634" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLTAFVEDELERNPLLERASDGPEPPAAGEPAARDAEFSEGGDAAAF FT GDDDTGERSGGQSSEPAPDEWINSELGSRTEIEQTFDSGLENVFPEEPAEAAARAAQDSAPTAFTEWGGGASNDDSYNLE FT AFVAAEVTLCEHLAEQLAVTVTAPAQRMIGRYLIDLVDDAGYLPPDLGEVGDRLGAGADDVAAVLAVLQTFDPPGICARN FT LSECLAIQLREKDRYDPAMQVLVEHLDLLARRDFAGLRRICGIDDEDLAGMIGEIRHLDPKPGLRFGTPRTQTVVPDVYV FT RPGPDGGWLVELNSDTLPRVLVNQTYYAELSKTIRKDGDKAYFTDCLQNATWLVRALDQRARTILKVATEIVRQQDGFFT FT SGVAHLRPLNLKTVADAIQMHESTVSRVTANKYMATNRGIFELKYFFTASIASADGGDAHSAEAVRHHIRQLIDAEDPSA FT VLSDDTIVERLRQAGIDIARRTVAKYREALRIPSSVQRRRDKQSVLGNARTAAAPSADRSRDIAPA* FT " FT gene complement(193849..195489) FT /locus_tag="Nham_0173" FT /colour=6 FT CDS complement(195721..196104) FT /locus_tag="Nham_0174" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPC4 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=7e-64, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0176 category=Unassigned, FT evalue=2e-38, 73.228346% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKIIVTVVALALPLLSSAALAQERAGSAALGALSGAVVLGPVGAVAGAVVGYTAGPSIAHSWGLRRSSTKRKRQSTNRSQ FT RRLTTVNDSRRAPGAQTASPKPRPTAAAAAAPRAVDPTPMPPVQALY* " FT gene complement(195721..196104) FT /locus_tag="Nham_0174" FT /colour=13 FT misc_feature complement(order(195913..195978,196039..196095)) FT /colour=11 FT /locus_tag="Nham_0174" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(196039..196104) FT /colour=11 FT /locus_tag="Nham_0174" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.999 at FT residue 22" FT CDS 196228..196590 FT /locus_tag="Nham_0175" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPC3 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=1e-66, FT 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0175 category=Unassigned, FT evalue=4e-23, 58.878505% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="LAGCAAQSTTRKLHMVKTSLLVAAASLLLALPASAADLSFTGEAPQVAPIAQAHMICDDDGYCYRTHAPRYVQRWHDDDG FT DDGAGDERRDYRPRYYAPRAGVSRNDDDDGSAFGVDVGPW* " FT sig_peptide 196228..196335 FT /colour=11 FT /locus_tag="Nham_0175" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.999 at FT residue 36" FT gene 196228..196590 FT /locus_tag="Nham_0175" FT /colour=13 FT misc_feature 196264..196332 FT /colour=11 FT /locus_tag="Nham_0175" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(196682..197683) FT /locus_tag="Nham_0176" FT /product="ABC transporter related" FT /note="PFAM: ABC transporter related: (6e-68)" FT /note="SMART: ATPase: (4.8e-11) " FT /note="SPTR top hit: 'Q3PPC2 ABC transporter. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0174 EC=3.6.3.25 FT category=Unassigned, evalue=1e-165, 88.757396% identity FT hit'" FT /note="COGs: 'evalue=1.0e-110 score=391 category=R FT group=COG1137 ABC-type (unclassified) transport system FT ATPase component' " FT /note="InterPro IPR001687:IPR003439:IPR003593" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MVDIFNVFRKRPQKRGPQAFARTQADITALGDTIGDMLTSPVRDAPPIARGADRDVPPVAPVPQSRRPARPTPEPPRPRA FT ASNGAAAPRMAKRPGYLAVHGVEKSFGSRQVVRGVSIYVRRGEAVGLLGPNGAGKTTVFYMITGLIPADRGAIELDGHDV FT TKLPMYQRARLGIGYLPQEASIFRGLSVEQNIRAVLEVVEPSKKKREAELDALLEEFNISRLRKTPSIALSGGERRRVEI FT ARALATRPSYMLLDEPFAGIDPIAVGDIQDLVRHLTNRGIGVLITDHNVRETLGLTDRAYIVYAGEILTEGSPDEIVNDP FT DVRRLYLGEEFRL* " FT gene complement(196682..197683) FT /locus_tag="Nham_0176" FT /colour=11 FT CDS complement(197904..198590) FT /locus_tag="Nham_0177" FT /product="OstA-like protein" FT /note="PFAM: OstA-like protein: (9.4e-25)" FT /note="SPTR top hit: 'Q3PPC1 OstA-like protein precursor. FT Nitrobacter hamburgensis X14., evalue=1e-123, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0173 category=Unassigned, FT evalue=2e-81, 74.347826% identity hit'" FT /note="COGs: 'evalue=2e-19 score=89.6 category=S FT group=COG1934 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR005653" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MNPATQSPRHLPLATRIAGLLCGGLITIAVMAAGEAAGQSAVQGVPNAMQGFSQNRDQPIQIEAAALEMRDKKKEATFSG FT NVKVVQGDTTMTSKTLVVYYESGNSANAKGKSPSKPAMASATPGPSGASSIKRLEARGNVVVTQKDQVVTGDTAQFDTRT FT NLVTMLGKVVLTQGKNVLRGDRLIVDMTTGVSRVESNSGRVQGLFQSSGQGGPLSGPMPLSGSSQKPK* FT " FT gene complement(197904..198590) FT /locus_tag="Nham_0177" FT /colour=13 FT misc_feature complement(198489..198554) FT /colour=11 FT /locus_tag="Nham_0177" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(198492..198590) FT /colour=11 FT /locus_tag="Nham_0177" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.991) with cleavage site probability 0.854 at FT residue 33" FT CDS complement(198587..199363) FT /locus_tag="Nham_0178" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPC0 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=1e-142, FT 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0172 category=Unassigned, FT evalue=1e-107, 85.589520% identity hit'" FT /note="COGs: 'evalue=2e-32 score=132 category=S FT group=COG5375 Uncharacterized protein conserved in FT bacteria' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VYSVQNPTYQAGMQTGLEARFARAARHSRMVRALRIAVPAVVGLVMAALIAVAVFNPFRALAKLPLEMDNLVVSGTKITM FT ESPHLSGFTPDKRPYEMQATTATQDITDPDHVELHTLRAKVLMEDRSTVTLNSRTGVFDTKTQMLDLHKDILMQSSTGYE FT ARLSHALVDMGQGTVTSDQPVDVKLLNGTLTADTMKVTEKGDVVRFENNVVMHLVMDRPVATAGPADEETAPPAASAERT FT HTSRGRSHTQHNSGGDTK* " FT gene complement(198587..199363) FT /locus_tag="Nham_0178" FT /colour=13 FT misc_feature complement(199199..199264) FT /colour=11 FT /locus_tag="Nham_0178" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(199614..200234) FT /locus_tag="Nham_0179" FT /product="3'-5' exonuclease" FT /note="PFAM: 3'-5' exonuclease: (6.5e-43)" FT /note="SPTR top hit: 'Q3PPB9 3'-5' exonuclease. FT Nitrobacter hamburgensis X14., evalue=1e-114, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0171 category=Unassigned, FT evalue=1e-98, 86.407767% identity hit'" FT /note="COGs: 'evalue=8e-63 score=233 category=J FT group=COG0349 Ribonuclease D' " FT /note="InterPro IPR002562" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MTIRLHRGDLPDQDLKRYTHSAAIDTETMGLNPHRDRLCVVQMSPGDGSADVIQIAQGQREAPNLKQLLADPTIVKIFHF FT ARFDLAALSNAFGVMPQPVYCTKIASRLIRTYTDRHGLKDLVRELLNIELSKQQQSSDWGAQTLSDAQLAYAASDVLHLH FT ALRDKLDAMLARENRTGMAQACFEFLPTRAKLDLSGWGAEDIFAHA* " FT gene complement(199614..200234) FT /locus_tag="Nham_0179" FT /colour=7 FT CDS 200513..201277 FT /locus_tag="Nham_0180" FT /product="protein of unknown function DUF88" FT /note="PFAM: protein of unknown function DUF88: (5.9e-05)" FT /note="SPTR top hit: 'Q3PPB8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-143, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0169 category=Unassigned, FT evalue=1e-108, 78.947368% identity hit'" FT /note="COGs: 'evalue=3e-08 score=52.7 category=S FT group=COG1432 Uncharacterized conserved protein' " FT /note="InterPro IPR002790" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MKAERQQRSPRFAILIDAENVSSKFADGLFKKIAQMGDAPVRLIYGNLSGPNLKGWASVLPDHSLERRDQIRAAKGKNSA FT DMALVIDAMDLLHDGRINGFCLVSSDSDFTNLAARLRREGASVYGFGEKKTPDCFQRACDRFISLEGLLPKTSEPKPIAV FT PPPILPNSKNPKPPSAAIPILNKAISQIESEDGWALLGPVGQQISKLFSDFDVRSYGFGKLSSLVRKTGAFEIDENNGPM FT RIRTRPRAGRKPAS* " FT gene 200513..201277 FT /locus_tag="Nham_0180" FT /colour=11 FT CDS complement(201529..202158) FT /locus_tag="Nham_0181" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPB7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-113, 100% FT identity hit'" FT /note="KEGG top hit: 'mlo:mll2445 category=Unassigned, FT evalue=1e-09, 31.491713% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSENTNGTVNYTAREAVGVFSDFEALEAAVDELEVSGFDRAAVSVLASDQKIKERMDGLYPTLIEIEDDGRAPGTAFAEK FT GSRVEGEAALVGIPFYIGCVAAAAVAAGSGGLAVPAIGTIIVGAAAGGGLGALLAGAVAHHHRASVSKQLSRGGTVVWVS FT VRDDDAEKRAVEILTKAGARDVHVHEIQREWTLKDRPLSEGQPDPLLRI* " FT gene complement(201529..202158) FT /locus_tag="Nham_0181" FT /colour=13 FT misc_feature complement(order(201745..201810,201823..201888)) FT /colour=11 FT /locus_tag="Nham_0181" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 202247..202450 FT /locus_tag="Nham_0182" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PPB6 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=3e-51, 99% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MFPVEAARKIGDGSTDTIIGHLPKFVLGMSHSSDGIGVIARPTEAQPPDRPGRHQRDSYRRALIIPR*" FT gene 202247..202450 FT /locus_tag="Nham_0182" FT /colour=13 FT tRNA complement(202647..202733) FT /locus_tag="Nham_R0003" FT /gene="tRNA-Leu5" FT /note="anticodon CAG, Cove Score=73.71" FT /product="tRNA_Leu" FT /colour=8 FT CDS 203006..203974 FT /locus_tag="Nham_0183" FT /product="NAD-dependent epimerase/dehydratase" FT /note="PFAM: NAD-dependent epimerase/dehydratase: FT (5.1e-13) 3-beta hydroxysteroid dehydrogenase/isomerase: FT (1.1e-10) dTDP-4-dehydrorhamnose reductase: (7e-09) FT NmrA-like: (3.6e-07) Male sterility-like: (7.9e-06)" FT /note="SPTR top hit: 'Q3PPB5 Oxidoreductase. Nitrobacter FT hamburgensis X14., evalue=1e-174, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0166 EC=1.1.1.145 FT category=Unassigned, evalue=1e-154, 87.888199% identity FT hit'" FT /note="COGs: 'evalue=1e-23 score=103 category=G FT group=COG0702 nucleoside-diphosphate-sugar epimerases' " FT /note="InterPro FT IPR001509:IPR002225:IPR005913:IPR008030:IPR013120" FT /codon_start=1 FT /transl_table=11 FT /colour=4 FT /translation="MASNTDTLVTVFGGSGFLGRHVVRALAKRDYRIRVGVRRPELAGHLQPLGKVGQIHAVQANLRYPASVRAAMRDSHVAIN FT LVGILSKSGAQTFDAVVAEGAATVAKAAAATGARMVHVSAIGADDKSASAYARAKAAGEKAVLAAVPSATILRPSVVFGS FT EDQFANRFAALALMSPVLPLIGGGATKLQPVYVGDVATAVADAVDGRTKAGAVYELGGPEVLSMREIIQIILRVIERERV FT LVPLPFLIARFKAMFLQFAPGALKLTPDQVALLRTDNVVSDSATAAGLTLQGLGISPDSMEAVVPQYLWRFRKAGQFAQN FT GA* " FT gene 203006..203974 FT /locus_tag="Nham_0183" FT /colour=4 FT CDS complement(204018..204824) FT /locus_tag="Nham_0184" FT /product="undecaprenol kinase, putative" FT /EC_number="2.7.1.66" FT /note="TIGRFAM: undecaprenol kinase, putative: (4.8e-75)" FT /note="PRIAM: Undecaprenol kinase" FT /note="PFAM: Bacitracin resistance protein BacA: FT (6.4e-124)" FT /note="SPTR top hit: 'Q3PPB4 Bacitracin resistance protein FT BacA (EC 2.7.1.66). Nitrobacter hamburgensis X14., FT evalue=1e-150, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0165 uppP EC=2.7.1.66 FT category=Unassigned, evalue=1e-142, 93.656716% identity FT hit'" FT /note="COGs: 'evalue=2e-65 score=242 category=V FT group=COG1968 Uncharacterized bacitracin resistance FT protein' " FT /note="InterPro IPR003824" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MFSDAIRAVILGIVEGVTEFLPVSSTGHLLLAERFFDLGSGNFWNTFTVLIQLGAILAIVVIYFEKLWRIALGMFSNDAD FT RRFVIGVLAAFLPAVVVGLIAGKYIKELLFNPWVVCFSLIVGGAVLMWVDQLDHKPHEHDATAFPLPMYIWIGIAQCLAM FT IPGVSRSGATIVSAMLLGADKRAAAEFSFFLAIPTMIGAFAYDFYKNRADMTTDHLGIVAIGFVVSFVTAIVVVKAFLSY FT VTRNGFTFFAWWRVIVGTLGLIALALGR* " FT gene complement(204018..204824) FT /locus_tag="Nham_0184" FT /colour=9 FT misc_feature complement(order(204024..204089,204111..204176,204222..204275,204315..204380,204441..204497,204519..204575,204636..204701)) FT /colour=11 FT /locus_tag="Nham_0184" FT /note="7 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 205005..205697 FT /locus_tag="Nham_0185" FT /product="glutathione S-transferase-like" FT /note="PFAM: glutathione S-transferase-like: (1.4e-10)" FT /note="SPTR top hit: 'Q3PPB3 Glutathione S-transferase, FT C-terminal. Nitrobacter hamburgensis X14., evalue=1e-132, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0164 EC=2.5.1.18 FT category=Unassigned, evalue=1e-125, 93.913043% identity FT hit'" FT /note="COGs: 'evalue=5e-22 score=98.0 category=O FT group=COG0625 Glutathione S-transferase' " FT /note="InterPro IPR004046" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MFTLFHHPFCPQSRFIRLALGEHGLDVRPVEERVWERREAFLALNPAGTTPVLIAEGVPAVPGAAIIADYLDETYGERIG FT DRRLLPTTMPERIEVRRLMAWFNEKFFEEASGPLVTERIYKRFMGEAIGGGSPETDVMRAARTNVRYHLAYIGWLARTRN FT YLAGDRLTYADLAAAAHLSAIDYLGDVPWAEDDAAKAWYARIKSRPSFRPLLSEWLAGVPASRTYVDLDF* FT " FT gene 205005..205697 FT /locus_tag="Nham_0185" FT /colour=9 FT CDS complement(205913..206833) FT /locus_tag="Nham_0186" FT /product="2-dehydropantoate 2-reductase" FT /EC_number="1.1.1.169" FT /note="TIGRFAM: 2-dehydropantoate 2-reductase: (4.3e-64)" FT /note="PRIAM: 2-dehydropantoate 2-reductase" FT /note="PFAM: Ketopantoate reductase ApbA/PanE-like: FT (1.6e-51)" FT /note="SPTR top hit: 'Q3PPB2 Ketopantoate reductase FT ApbA/PanE (EC 1.1.1.169). Nitrobacter hamburgensis X14., FT evalue=1e-170, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0163 EC=1.1.1.169 FT category=Unassigned, evalue=1e-139, 81.699346% identity FT hit'" FT /note="COGs: 'evalue=1e-59 score=223 category=H FT group=COG1893 Ketopantoate reductase' " FT /note="InterPro IPR003710:IPR013332" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MRILVVGAGATGGYFGGRLLNAGQDVTFLVRSRRATELASAGLVVKSPLGDFTLKNPPTVQAGGLSERFDVILLSCKAFD FT LDDAITSFAPAVGPRTAIIPLLNGMRHLEALDAKFGRERVLGGLCSLAVTLNDKREIVHLAPMQSLGFGERDGGTSDRVR FT AITEVFASGNCGSQASDDIIQDMWEKWVFLATLAGATCLMRASIGQIVAAPGGRDFILSALDEIAGIAKAAGHAPREQFL FT TRTTAMLTAEGSPLTASMFRDIEAGARVEADQIIGDLITRAEAAKLPVPKLRTIYTHLKAYENRRG* FT " FT gene complement(205913..206833) FT /locus_tag="Nham_0186" FT /colour=12 FT CDS complement(206930..208279) FT /locus_tag="Nham_0187" FT /product="MATE efflux family protein" FT /note="TIGRFAM: MATE efflux family protein: (1.3e-76)" FT /note="PFAM: multi antimicrobial extrusion protein MatE: FT (1.2e-29)" FT /note="SPTR top hit: 'Q3PPB1 Multi antimicrobial extrusion FT protein MatE. Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0162 matE FT category=Unassigned, evalue=0.0, 85.968820% identity hit'" FT /note="COGs: 'evalue=2e-50 score=193 category=V FT group=COG0534 Na+-driven multidrug efflux pump' " FT /note="InterPro IPR000719:IPR002528" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTTARPLWQAYLAFLMPMMLSNVLQALFGTINGIYLGQMIGVDALAAASIFFPMMFFFISFIIGLGAGSSVLIGQAWGAR FT AVGKAKAIAGTTLALTLLGGCVIAIGGGVFARDLMMALATPPNILDAATDYARIMMITMPATFTFLLATAMMRGVGDTVT FT PLWALAISTLIGLVVTPALIRGWFGLPQFGVASAAIASAISAVVTLLWLGVHMRRMNHPLAPDAALLRAMRLDRELLGKV FT LRIGVPTAVQMVVMSLAEIVLLGIVNRFGSDATAAYGAVNQVLSYVQFPAISIAITASIFAAQAIGAGQTGRIGAIVRTG FT IWLNLLLTGGLVALGYLLSRIIIGLFITNPEVLDLAQTLLFIVLWSTVPFGMAGVFSATMRASGTVLVPTLLSILAIVAV FT EVPVAMVLSHRIGVEGVWIAYPAAFCTMMVLQMAFYLMVWRKREIKRLI* " FT gene complement(206930..208279) FT /locus_tag="Nham_0187" FT /colour=9 FT misc_feature complement(order(206960..207025,207056..207121,207143..207208,207254..207319,207359..207424,207485..207550,207647..207712,207725..207790,207812..207877,207953..208018,208058..208123,208154..208219)) FT /colour=11 FT /locus_tag="Nham_0187" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(208502..209083) FT /locus_tag="Nham_0188" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPB0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-105, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:blr0586 category=Unassigned, FT evalue=1e-67, 71.038251% identity hit'" FT /note="COGs: 'evalue=8e-48 score=183 category=S FT group=COG3644 Uncharacterized protein conserved in FT bacteria' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MIHDQTSCFTAFEGQRRIASGPLADVALAVKRAGTRTTAPIAIYSDATGRPIDLDLRGSDDEIAARLTLPVGTAEACDAS FT KPRGRGRPKLGVVAREVTLLPRHWDWLSAQPGGASVALRKLVEEARRSSGDRDRSRAARDAAYHFMSAMAGNLANFEEAA FT RALFAGDRRRLAGLIAGWPDDIRDHIVKLVERI* " FT gene complement(208502..209083) FT /locus_tag="Nham_0188" FT /colour=13 FT CDS 209445..210620 FT /locus_tag="Nham_0189" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PPA8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 99% identity FT hit'" FT /note="KEGG top hit: 'atc:AGR_L_1972 category=Unassigned, FT evalue=1e-139, 64.415584% identity hit'" FT /note="COGs: 'evalue=1.0e-137 score=480 category=R FT group=COG3919 ATP-grasp enzyme' " FT /note="InterPro IPR011761" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VGGSGVVILGGAHGTLALARSLGTLKIPVVCISNDRMLPSWSRYVEGPISWPGHCDGEAVSFLARMAKERKWDGYLLVPA FT GDGEVRFVSENRAALSATFKIMLPGWDSLRWLCDKPFLYRRADELNVKIPRTHRLVSVEQAETLAVTFPVVLKPNMGGGN FT GPFFKAKVVRADDQAELARAYRDAAGQIGAANVVVQELIPGGGESQFSYAALWHDGQPVTEFTARRTRQYPVDFGYTSTF FT VEVVDEPRAIEAARTMLASVGFGGLVEVEFKRDHRDGSLKLLDVNPRPWSWFGLCAAAGVDLGAMMWQVANGRPAKPAVA FT QIGVSWMYLVRDFVVAMTLLVRGRIGVGDYLRSFGRVRAWAAFALNDPLPGVIDLPLTAWRVLTRRVLKIG* FT " FT gene 209445..210620 FT /locus_tag="Nham_0189" FT /colour=13 FT CDS complement(210726..211865) FT /locus_tag="Nham_0190" FT /product="Uncharacterized protein involved in methicillin FT resistance-like" FT /note="SPTR top hit: 'Q3PPA7 Similar to Uncharacterized FT protein involved in methicillin resistance. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'mta:Moth_2408 category=Unassigned, FT evalue=1e-12, 24.776119% identity hit'" FT /note="COGs: 'evalue=4e-11 score=62.6 category=V FT group=COG2348 Uncharacterized protein involved in FT methicillin resistance' " FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MLQQANVPPLGVAAPIDCPTPADRYSVEIDSVASDAWDVIASGFADIHPEQTACYASNHWKGHDSHLLLRHNGEPVAGAR FT VAIVGLPLIGRGLAFLRFGPFWRKQKAEADPEIYRTMIAALVEEYCVTRGHCLTTLSRPHPHYHALECGLLRDLGFVQRR FT AFSDCERYVVNTALDAETQRRSLAQKWRYNLRQALGNSVDVRLTEDPEEIQAFQALYVSMMERKHFSSTTPVHLTGELIS FT RLPEKLKPKLVIARHAGKLVAGATIGLFGDTAYYMFGATSADALPIKAGYALHWWIFNWLHDHGYEWYDLGGAAHEPGLR FT QFKKGFVGKAGSVVVMEGEFDRWASSLGRLSADTVFGLRHLKRRIQYGAKFGKLADPSS* FT " FT gene complement(210726..211865) FT /locus_tag="Nham_0190" FT /colour=9 FT CDS complement(212055..213800) FT /locus_tag="Nham_0191" FT /product="Gamma-glutamyltransferase" FT /EC_number="2.3.2.2" FT /note="PRIAM: Gamma-glutamyltransferase" FT /note="PFAM: gamma-glutamyltranspeptidase: (2.7e-230)" FT /note="SPTR top hit: 'Q3PPA6 Gamma-glutamyltranspeptidase FT precursor (EC 2.3.2.2). Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0161 EC=2.3.2.2 FT category=Unassigned, evalue=0.0, 82.222222% identity hit'" FT /note="COGs: 'evalue=1.0e-164 score=573 category=E FT group=COG0405 Gamma-glutamyltransferase' " FT /note="InterPro IPR000101" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MIRRRPRRHIFFLAIAAWMVLWAPASAQDVRGASPPLAPGAIRPVVAKHGMVVAQEKLAAAIGAEVLARGGNAIDAAVAT FT GFAMAVTYPRAGNIGGGGFMVIHLADGNRDIAIDYRETAPAATRRDIFLGTDGKPDPAKSRDSALGIGVPGTVAGLALAL FT DKYGSGKFTLADLLKPAIALARDGLKIGDDTADTLPQWHRRIARWPSSMTIFSHPDGSALREGDLLIQTDLAATLTAIAD FT HGPRGFYEGPVASKLVKGIRAAGGIMTLDDLRSYRPLDREPVRGSYRGYDIVSMPPSSSGGTVLIESLNILEGFPMRDLH FT QGSVDSLHLLIEAMKRAYADRARYLGDPAFVQAPIATLLAKNYAAKQRASIDMMRATPAAAVPLPPPHEGDNTTHFSVAD FT AFGNAVSNTYTLNFSYGVGLVADGTGVLLNNELDDFTAAPGAANAYGLVGFAANLPGPGKRPLSSMTPTIVLKDGKPVLV FT TGSPGGSRIISTVLQVIVNVIDYDMTIADAVDAPRLHHQWLPDRVRAERGFSEQIIAGLRARGHTVVMPMGQTSANSIAI FT TPDGFFGAADPRTRGSSAAGY* " FT gene complement(212055..213800) FT /locus_tag="Nham_0191" FT /colour=10 FT sig_peptide complement(213717..213800) FT /colour=11 FT /locus_tag="Nham_0191" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.985 at FT residue 28" FT misc_feature complement(213723..213773) FT /colour=11 FT /locus_tag="Nham_0191" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 213912..215321 FT /locus_tag="Nham_0192" FT /product="major facilitator superfamily MFS_1" FT /note="PFAM: major facilitator superfamily MFS_1: FT (6.4e-18)" FT /note="SPTR top hit: 'Q3PPA5 Major facilitator FT superfamily. Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0160 category=Unassigned, FT evalue=0.0, 89.154013% identity hit'" FT /note="COGs: 'evalue=4e-87 score=315 category=R FT group=COG2270 Permeases of the major facilitator FT superfamily' " FT /note="InterPro IPR007114:IPR011701" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTVTTAVPAGNADPGARYASRTAVASWIMFDWAAQPYFTLITTFVFAPYFATFVAATPAEGQSLWGFATGAAGIVIALAS FT PVLGAIADASGRRKPWIAAFGALLVIGSSLMWIGKPGDAGVILPLLIAYGIATVGVEFATVFNNAMMPSLVPPDKIGRLS FT GTGWATGYIGGILSLVLVLGFLAANPATGKTLFGLSPLFGLDPATHEGDRITGPLTGLWFVIFVLPMFLLTPDFPARRPL FT RTALREGLIELRGTLRELPKRKSMATFLLANMIYTDGLVSLFAFGGIYAAGTFGWHTIQIGTFGILLAIAGALGAWIGGK FT LDDRVGPKVVIAASMIVLLSAIVAILMVDRDSILFVEVAPPVPGGGLFAAPAEKAYLILGCLIGGAGGPLQAASRTLLIR FT LAPKDRIAQFFGLFALTGKVTSFVGPLLVGLITAITASQKAGMAVLVLFFLAGLVLLSQVRVQPGQSSG* FT " FT gene 213912..215321 FT /locus_tag="Nham_0192" FT /colour=11 FT misc_feature order(214020..214088,214101..214169,214194..214253,214266..214334,214395..214463,214539..214607,214713..214781,214794..214862,214896..214955,215037..215105,215139..215207,215235..215291) FT /colour=11 FT /locus_tag="Nham_0192" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(215345..216328) FT /locus_tag="Nham_0193" FT /product="cytochrome c, class I" FT /note="PFAM: cytochrome c, class I: (0.00036)" FT /note="SPTR top hit: 'Q3PPA4 Cytochrome c, class I. FT Nitrobacter hamburgensis X14., evalue=1e-179, 100% FT identity hit'" FT /note="KEGG top hit: 'bur:Bcep18194_B0408 FT category=Unassigned, evalue=1e-105, 62.000000% identity FT hit'" FT /note="COGs: 'evalue=7e-67 score=247 category=C FT group=COG3258 Cytochrome c' " FT /note="InterPro IPR003088:IPR009056" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MSRNPVAPSVPAVAVLALAAAGFIGSMLSASAAAPLTGATPEQPPAAKTEAARPSYTPPADSDIPDGPFGDMIRLGEAIF FT HDTRHNAKGFVGNDLQCSNCHIDRGRQPNSAPLGAAYLLYPAYRAKNGHVNTFQERLQGCFRFSMNGKAPPFNDKVLVAL FT ETYAYFLAKGGPTGVAVKGQGYPKLKAPDQPADYDRGAKAYAQHCSLCHGGDGEGQKSADGQTVFPPLWGPRSFNWGAGM FT ASINNAAGFIKANMPLGLGGSLSDQEAWDIATYMDSQERPQDPRFVESVAETRKRFHDEPTSKYGLVVNGVHLGEKSPPS FT GTIDAAD* " FT gene complement(215345..216328) FT /locus_tag="Nham_0193" FT /colour=3 FT misc_feature complement(216227..216292) FT /colour=11 FT /locus_tag="Nham_0193" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(216230..216328) FT /colour=11 FT /locus_tag="Nham_0193" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.820 at FT residue 33" FT CDS complement(216325..216987) FT /locus_tag="Nham_0194" FT /product="cytochrome c, class I" FT /note="PFAM: cytochrome c, class I: (8.4e-05)" FT /note="SPTR top hit: 'Q3PPA3 Cytochrome c, class I FT precursor. Nitrobacter hamburgensis X14., evalue=1e-125, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0159 category=Unassigned, FT evalue=7e-91, 76.470588% identity hit'" FT /note="COGs: 'evalue=5e-15 score=74.6 category=C FT group=COG2863 Cytochrome c553' " FT /note="InterPro IPR003088:IPR008168:IPR008169:IPR009056" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MRSLVGAALLLLGMSALPVLAADGKDITARGTPDRAASCSPCHGQNGQGQPATGVPRLAGLNAQYFERQLESFKDGTRKN FT RIMLMIASDLTDGERKALANYYADMATPKPETAPADPAVIAAGAKLAATGDWSKDLPGCGQCHGAAGLGVGTDFPRLAGQ FT WAVYIEKALRSWKAGDRKNDPMGVMANVANKLTDDQIKSVAAYYESLPVAAPVHNPDNKP* FT " FT gene complement(216325..216987) FT /locus_tag="Nham_0194" FT /colour=3 FT sig_peptide complement(216922..216987) FT /colour=11 FT /locus_tag="Nham_0194" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.999 at FT residue 22" FT CDS complement(217228..218820) FT /locus_tag="Nham_0195" FT /product="phosphoribosylaminoimidazolecarboxamide FT formyltransferase/IMP cyclohydrolase" FT /EC_number="2.1.2.3" FT /note="TIGRFAM: phosphoribosylaminoimidazolecarboxamide FT formyltransferase/IMP cyclohydrolase: (1.4e-195)" FT /note="PRIAM: Phosphoribosylaminoimidazolecarboxamide FT formyltransferase" FT /note="PFAM: AICARFT/IMPCHase bienzyme: (4.4e-147) FT MGS-like: (2.2e-59)" FT /note="SPTR top hit: 'Q3PPA2 AICARFT/IMPCHase bienzyme (EC FT 2.1.2.3). Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0158 purH EC=2.1.2.3 FT category=Unassigned, evalue=0.0, 91.886792% identity hit'" FT /note="COGs: 'evalue=0.0 score=709 category=F FT group=COG0138 AICAR transformylase/IMP cyclohydrolase PurH FT (only IMP cyclohydrolase domain in Aful)' " FT /note="InterPro IPR002695:IPR011607" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="MTDRPRRVTRALLSVSDKTGLIEFARALAGLGIDLVSTGGTAKAIAAAGLKVSDVSELTGFPEMMDGRVKTLHPKVHGGL FT LAIRDNGDHAKAMKDHGIAPIDLLVVNLYPFEATVDKGAPYEDCIENIDIGGPAMIRAAAKNHDDVAVVVEAQDYQAVLD FT ELKANDGATTLGLRKRLAAKAYARTAAYDAAISNWFAVQLATDAPDYRAFGGRLAQTLRYGENPHQTAAFYRTPDRRAGV FT STARQLQGKELSYNNINDTDAAYECVAEFDATRTAACVIIKHANPCGVAEGADLASAYRKALACDQTSAYGGIIAFNRTL FT DADAANAVAGIFTEVIIAPDATEEAIAIIGKRKNLRLLLAGGLPDPRARGLTAKTVAGGLLVQGRDNAVVDDMALTVATK FT RAPTDAEMRDLRFAFRIAKHVKSNTIVYAKDLATVGIGAGQMSRVDSARIAARKADDAARELKLAQPLTIGSVVASDAFF FT PFADGMLACVEAGATAVIQPGGSMRDDEVIKAADEHGIAMVFTGVRHFRH* " FT gene complement(217228..218820) FT /locus_tag="Nham_0195" FT /colour=16 FT CDS complement(218922..220676) FT /locus_tag="Nham_0196" FT /product="Heparinase II/III-like" FT /note="PFAM: Heparinase II/III-like: (9.6e-52)" FT /note="SPTR top hit: 'Q3PPA1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 99% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0157 category=Unassigned, FT evalue=0.0, 87.842466% identity hit'" FT /note="COGs: 'evalue=1.0e-129 score=456 category=S FT group=COG5360 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR012480" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VSVAYRRRISTLLLRRFARRTIARAGDGPAALSRLWPGRADRLTIAPHDLRTADGTRAAEIYAGRFVFAGKIVTCHSRSI FT FDLEPPSEDWEAALLGFGWLRHLRAADTAITRANARSLVDDWMSNPARRRPLGRRADVMARRVISLLSQAPLVLSDTDGK FT FYRRYLRALARDIRLLRFGLHDAPDGVARLQVLIALCYASLCLANQARTIRTATRKLSDELRRQILPDGGHVSRNPGALI FT ELLIDLLPLRQTFAARNIAPPPALLNAIDRMMPMLRFFRHGDGSFALFNGMSGAPSDLLATLLAYDDTRGIPMASMPHTG FT FQRLDAGTTTLIVDTGPPPPSNLSEEAHAGCLSFELSSGPNRIVTNCGTPSTGRDNWRTFARSTPAHSTLSCHETSSCQF FT VERSAMKRLLQGAPIVSGPANVESSRETVDEAERLTASHDGYLARFGVIHRRVLTITRDGSRLEGEDTLAPAPSGRMKGS FT RIDYALRFHLHPSVKASRLSDARGVMLVLPNREVWTFEAPDDRVDLEDSVFLAGNDGPRRTTQIVIHQSAREAPTVRWSL FT VRSTASVTATNARRNARREPELPL* " FT gene complement(218922..220676) FT /locus_tag="Nham_0196" FT /colour=13 FT CDS complement(220814..222166) FT /locus_tag="Nham_0197" FT /product="Fmu (Sun)" FT /note="PFAM: Fmu (Sun): (1.9e-44) NusB/RsmB/TIM44: FT (1.4e-08)" FT /note="SPTR top hit: 'Q3PPA0 Fmu (Sun)/eukaryotic FT nucleolar NOL1/Nop2p:Antitermination protein NusB. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0156 category=Unassigned, FT evalue=0.0, 87.333333% identity hit'" FT /note="COGs: 'evalue=1e-70 score=260 category=J FT group=COG0144 tRNA and rRNA cytosine-C5-methylases' " FT /note="InterPro IPR000051:IPR001678:IPR006027" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MPSTRFAPPVEVPGLAARRIAADILDGVLHKHRTLDEQLEGAAAHPGLKALADRDRALMRRLVATILRRLGTLGHVLSRL FT LDRGIPTDAPRAQSALLIGAAQILWMDVPDHAAVDLSVRLVQSDRRAAKYAGLVNAVLRRCAREGQPLIDEVRSEALDIP FT PWLMTRWIANYGENTAKAIATAISHEPSLDLTVKAGAAQWATRLHGEVLPTGTVRTALQGPVTMLPGFSEGRWWVQDAAA FT ALPARLFGDLQGRRVADLCAAPGGKTAQLAQAGAEVTAIDRSPNRVARLRDNLGRLSLGARALVADAVEWQDDAAGSGFD FT GVLVDAPCSSTGTIRRHPDVAWLKQDSDIAALTALQKRLLQKAFALLKPGGTLVYCTCSLEPEEGEHLVGALLASEAGVR FT RVPIGAAEVAGLEDIVTPAGDLRTLPCHLPHDDPRLSGLDGFYAARLIKS* " FT gene complement(220814..222166) FT /locus_tag="Nham_0197" FT /colour=7 FT CDS 222371..222589 FT /locus_tag="Nham_0198" FT /product="protein of unknown function DUF1674" FT /note="PFAM: protein of unknown function DUF1674: FT (7.1e-26)" FT /note="SPTR top hit: 'Q3PP99 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=3e-34, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0155 category=Unassigned, FT evalue=8e-23, 77.777778% identity hit'" FT /note="COGs: 'evalue=2e-10 score=57.8 category=S FT group=COG5508 Uncharacterized conserved small protein' " FT /note="InterPro IPR012875" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MADESSALPRTGPAPARKALTPAARRALAEAEARRAAAQTAASAGPKEIQGPKGPEPTRFGDWERNGIASDF*" FT gene 222371..222589 FT /locus_tag="Nham_0198" FT /colour=13 FT CDS join(222663..223001,223001..223249) FT /locus_tag="Nham_0199" FT /product="staphylococcus nuclease (SNase-like) " FT /note="SPTR top hit: 'Q3PP98 Possible staphylococcal FT nuclease homologues. Nitrobacter hamburgensis X14., FT evalue=6e-63, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0154 category=Unassigned, FT evalue=3e-40, 70.796460% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /evidence=not_experimental FT /colour=11 FT /pseudo FT /translation="MYPYTRINASSGPRWHSRASPVLPWIFILGVVAGTMLPVRSWVHWP FT PEIVNQTPLPSDTDTRAIWARAADSGVRHPVDVVRTIDGDTFEALVHLWPGLDMTTRVRL FT RGIDAAEMKAACPEELRLAKAASERLRDLLGEGVVTIYNIGPDKYHGRIVADAATARTPD FT VSAAMLASGHARAYHGGHRGSWCNRAFSG" FT gene 222663..223249 FT /locus_tag="Nham_0199" FT /colour=11 FT /pseudo FT CDS complement(223410..223928) FT /locus_tag="Nham_0200" FT /product="ErfK/YbiS/YcfS/YnhG" FT /note="PFAM: ErfK/YbiS/YcfS/YnhG: (3.1e-37)" FT /note="SPTR top hit: 'Q3PP96 ErfK/YbiS/YcfS/YnhG FT precursor. Nitrobacter hamburgensis X14., evalue=2e-95, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0152 category=Unassigned, FT evalue=1e-77, 80.813953% identity hit'" FT /note="COGs: 'evalue=1e-26 score=112 category=S FT group=COG1376 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR005490" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLTRAAVALAATIGASLLGTASAEARPDEVSYRSDYAPGTILVKTKERRLYLIVDSDRAIRYPVGVGKAGKQWAGTAHIE FT GKYRDPAWAPPAEVKRDNPRIPDVIAGGSPSNPMGVAAMTLSGGGQYAIHGTNRPQTVGHFVSYGCIRMYNNDIDDLYRR FT VSIGTPVVVMQR* " FT gene complement(223410..223928) FT /locus_tag="Nham_0200" FT /colour=13 FT sig_peptide complement(223857..223928) FT /colour=11 FT /locus_tag="Nham_0200" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.664 at FT residue 24" FT CDS complement(224147..225778) FT /locus_tag="Nham_0201" FT /product="lysyl-tRNA synthetase" FT /EC_number="6.1.1.6" FT /note="TIGRFAM: lysyl-tRNA synthetase: (3.1e-46)" FT /note="PRIAM: Lysine--tRNA ligase" FT /note="PFAM: Lysyl-tRNA synthetase, class 1c: (1.7e-45)" FT /note="SPTR top hit: 'Q3PP95 Lysyl-tRNA synthetase FT (Archaeal), class 1c (EC 6.1.1.6). Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0151 EC=6.1.1.6 FT category=Unassigned, evalue=0.0, 94.280443% identity hit'" FT /note="COGs: 'evalue=1.0e-153 score=536 category=J FT group=COG1384 Lysyl-tRNA synthetase (class I)' " FT /note="InterPro IPR001412:IPR002904" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MSDVMSASDLRALAEQSNAWPFEQARQIVARLKKTPKDEVLFETGYGPSGLPHIGTFGEVARTTMVRHAFRVLTEDRIKT FT RLLAFSDDMDGLRKVPDNVPNKELLAQDLGKPLTKVRDPFGTHPSFGEHNNARLRAFLDTFGFDYEFASSTAYYTSGRFD FT ATLLKMLENIDKVMAIMLPSLREERAASYSPFLPICPRTGVVLQVPVVAHDAKAGTISYDDPETGEQVTVPVTGGHCKLQ FT WKPDWAMRWTALCVDYEMAGKDLIDSVKLSGKICSALGGTPPEGFNYELFLDDKGQKISKSKGNGITIDEWLRYASPESL FT SLFMYREPKAAKRLHFDVIPRNVDDYQQFLDGYPRQDARQQLANPVWHIHAGRPPAADMPVTFQLLLTLVSSSNAENTET FT LWGFIGRYRPGVTPQTHPKLDALVGYAINYYRDFVAPTKQFREPTESESAALQDLRDALSQLPADVSAEDIQNAVYEIGR FT REPFLNHKKLAKDGRPGVSLDWFNMLYQVLLGQEKGPRFGSFVAVYGVQNAIAMIDGALARAG* FT " FT gene complement(224147..225778) FT /locus_tag="Nham_0201" FT /colour=7 FT CDS complement(225903..226823) FT /locus_tag="Nham_0202" FT /product="extracellular solute-binding protein, family 3" FT /note="PFAM: extracellular solute-binding protein, family FT 3: (2.3e-58)" FT /note="SMART: Ionotropic glutamate receptor: (1.6e-06) " FT /note="SPTR top hit: 'Q3PP94 Extracellular solute-binding FT protein, family 3 precursor. Nitrobacter hamburgensis FT X14., evalue=1e-177, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0150 category=Unassigned, FT evalue=1e-160, 88.235294% identity hit'" FT /note="COGs: 'evalue=2e-32 score=133 category=T FT group=COG0834 ABC-type amino acid transport/signal FT transduction systems periplasmic component/domain' " FT /note="InterPro IPR001311:IPR001320:IPR001638" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MQPQITVSANERLIRRLATMLGCMLVAGWMLVLGAAVDDARAQAAAKTATVAPQAVPGFWDPRRRPDRPDLSRITVIRFL FT TETDYPPFNFTGPDGNPAGFNVDLARALCEEIKITCTIQMRRFETLVDALTSNRGDAIIASLAVTPELRKRVDFTDPYYR FT TPARFVSRRDAVMAEVRPEYLEGKKVGVIAGSAHEAYLKVFFTDAELHTYPNDEALRQALRRGEVDFIFGDAISLAFWIN FT GTDSEGCCAFSGGPFVESRYFGEGVGIAVKKGNDVLRQALNWALFRVWEKGRYTDLWLRYFSVSPF* FT " FT gene complement(225903..226823) FT /locus_tag="Nham_0202" FT /colour=15 FT sig_peptide complement(226716..226823) FT /colour=11 FT /locus_tag="Nham_0202" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.962) with cleavage site probability 0.676 at FT residue 36" FT misc_feature complement(226719..226784) FT /colour=11 FT /locus_tag="Nham_0202" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 226878..228275 FT /locus_tag="Nham_0203" FT /product="glycosyl transferase, family 2 " FT /note="SPTR top hit: 'Q3PP93 Possible glycosyl FT transferases. Nitrobacter hamburgensis X14., evalue=0.0, FT 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0149 category=Unassigned, FT evalue=0.0, 81.062356% identity hit'" FT /note="COGs: 'evalue=3e-19 score=90.0 category=M FT group=COG1215 Glycosyltransferases probably involved in FT cell wall biogenesis' " FT /note="InterPro IPR001173" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VSFVAWGRDLAGRDQVEDGRWIAAPRRDRPVEAPLPVCPAGVSHILQSSNDNWLCDPEPGPASELDCLRHVLAPALLRAA FT EARGREVGIGADQALIRSGVINEDAYLQTLSSHTGLAIETCAEESRADCPLPDRHLPGAAEHGLLPLRRDGKLIWAVAPR FT GFAARRLCRLTAAYPSLCDRVRLTSTRDLNQFLLRQTGDVLGQSAANALGRRFPALSAAPVADGAPGGLRTMRRPAQTGA FT LAVMMVLTPTFALDILSDALAIWFLAFISLRLAASLRPPRPAVRLPRVPDGRLPTYTVIAALYREAASVAPLMQAIGALD FT YPREKLDVIIVIELDDLETRAALARLGPMPQVQVLLASAEGPRTKPKALNCALPFARGSFTAVFDAEDRPDPGQLRAALD FT AFRIQGTDVACAQASLCIENQSDSWLSRMFAAEYAGQFDVFLPGLASFGVPLPLGGSSNHFRGIR* FT " FT gene 226878..228275 FT /locus_tag="Nham_0203" FT /colour=9 FT CDS 228332..228793 FT /locus_tag="Nham_0204" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PP92 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=2e-80, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0146 category=Unassigned, FT evalue=1e-62, 89.051095% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSDSIRLARTDTYEHTISGLLKKRADLFNEAERIRDRMAEIKNDISALDRVLGTLGYTGDLDAEMPRQKRQVLFGRGELT FT RAILDELRDAPRPLGSREIAQGIVALSGQDARDRKYVTDLTRRVSKALRMLKESGSVRSLGDCKGNLRWTLQS* FT " FT gene 228332..228793 FT /locus_tag="Nham_0204" FT /colour=13 FT CDS 229256..229846 FT /locus_tag="Nham_0205" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PP91 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-108, 99% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VPVVNVAADDIIARAKYFRQMLDNELASPALRGAELFYHNSMPDILAHCYFAISEAYKKIYLVNGHRTDSSKRAALTCAT FT IVAIAPIRQNPDSNSEEKAIEAAYANPMLAMSCSCSIVNHPFHKRPFDDRHRVYRAFFDFSLPSIEPILAEARANRGAII FT SDWEIPLTSPEETLLNLLVDDFVMYSKFTIAEQEGR* " FT gene 229256..229846 FT /locus_tag="Nham_0205" FT /colour=13 FT CDS complement(229843..230832) FT /locus_tag="Nham_0206" FT /product="putative transposase " FT /note="SPTR top hit: 'Q3PP90 Possible transposase. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0147 category=Unassigned, FT evalue=0.0, 95.092025% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MRSTENVGLMSQHFLLSAKARTLSLAKVARLSDDEAYETFRLIRWAATDGTPVCPRCDCAGVYTYTTRRLFKCKACSHQF FT SVTSGTIFASRKLPVRDYLLAIAIFVNGAKGHSALQLSRDLDCQYKTVFVMAHKIREALAAEASSATASGEVEVDGAYFG FT GYVKPANHKGNRRDRRRIINQNGKRRVVVIMRERGGRTLPFVFRSEDASLVKIARTVAPGSVIHADEATHWDALHARFLT FT KRINHSESYSDGDACTNQAESFFSRMRRAEIGIHHRIAGDYLSAYAGEMAWRENNRRVSNGEQYLMVADAALHHPVSRQW FT KGYWQRKGA* " FT gene complement(229843..230832) FT /locus_tag="Nham_0206" FT /colour=11 FT CDS 230911..231138 FT /locus_tag="Nham_0207" FT /product="transcriptional regulator, XRE family " FT /note="SPTR top hit: 'Q39CM1 Transcriptional regulator, FT XRE family. Burkholderia sp. (strain 383) (Burkholderia FT cepacia (strain ATCC 17760 / NCIB 9086 / R18194))., FT evalue=6e-10, 46% identity hit'" FT /note="KEGG top hit: 'bur:Bcep18194_A6201 FT category=Unassigned, evalue=3e-10, 46.753247% identity FT hit'" FT /note="COGs: 'evalue=2e-04 score=37.6 category=K FT group=COG2944 transcriptional regulator' " FT /note="InterPro IPR001387" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTPEQCRAARAWLNWPQDALAKAANVGVSTVRDFEAGRREPTRNNLTAMKAALETGGISFVDDEKERGIKAPRST*" FT gene 230911..231138 FT /locus_tag="Nham_0207" FT /colour=11 FT CDS complement(231400..231999) FT /locus_tag="Nham_0208" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PP89 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-108, 100% FT identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MEKCIEISVAGEPDSPYTGEVLKPEADSMSKTVDQVISELAAEITAEEASLRKKKETVNTLCGAIGRPPAYSLESAATAL FT PTQIRSDQFYGQPLAASVRTILEMRRAQNLGAAANREIYDSLVAGGYEFDTKSEDIAQKSLRNSLAKNTALFHKLPNGQF FT GLLAWYPNVKKPKASAAVRGEDEIEEPPTNDNTGESILD* " FT gene complement(231400..231999) FT /locus_tag="Nham_0208" FT /colour=13 FT CDS 232194..232853 FT /locus_tag="Nham_0209" FT /product="putative glycosyl transferase " FT /note="SPTR top hit: 'Q3PWX4 Possible glycosyl FT transferases. Nitrobacter hamburgensis X14., FT evalue=1e-126, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0145 category=Unassigned, FT evalue=1e-103, 82.191781% identity hit'" FT /note="COGs: 'evalue=3e-12 score=65.7 category=M FT group=COG1215 Glycosyltransferases probably involved in FT cell wall biogenesis' " FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VGGWDAYNVTEDADLGFRLARFGYRSTTFVSTTFEEAPARFGGWLRQRSRWMKGWMQTWSVHMRRPWRLWSDAGAKGFFT FT LNAVVGGNVLTALCFPILAVDIAVGLLARSGGATEGLAASPITPLHLTTIVAGFVSTIVVGLMGLARRGQLRQGWILALT FT PVYWACLSIAAWRALYQLLNEPYRWEKTEHGLSPQIRSNATAQTPTIRAMATQRRRRYR* FT " FT gene 232194..232853 FT /locus_tag="Nham_0209" FT /colour=9 FT misc_feature order(232425..232493,232551..232619,232653..232721) FT /colour=11 FT /locus_tag="Nham_0209" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(232844..233437) FT /locus_tag="Nham_0210" FT /product="electron transport protein SCO1/SenC" FT /note="PFAM: electron transport protein SCO1/SenC: FT (8.5e-40)" FT /note="SPTR top hit: 'Q3PWX3 Electron transport protein FT SCO1/SenC precursor. Nitrobacter hamburgensis X14., FT evalue=1e-109, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0144 senC FT category=Unassigned, evalue=8e-93, 84.771574% identity FT hit'" FT /note="COGs: 'evalue=6e-41 score=160 category=R FT group=COG1999 Uncharacterized protein SCO1/SenC/PrrC FT involved in biogenesis of respiratory and photosynthetic FT systems' " FT /note="InterPro IPR003782" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTNKVTRPLIVFAAFAGSLVVGLTVVLWLLGGLTSKPAVASIGGPFQLTDQTGQTVTEKSLVGRPTIVFFGYTHCPDVCP FT TSLFEMSEVLRAMGKDADRVNAYFVTVDPERDTQATMKEYLSSFDPHLKGLTGDTAAVTKMASEYRVFIKKIPLQDGGYS FT MDHTALIYLMDRDGRFVSPFDLKRTPEAAAADLKRYL* " FT gene complement(232844..233437) FT /locus_tag="Nham_0210" FT /colour=11 FT sig_peptide complement(233315..233437) FT /colour=11 FT /locus_tag="Nham_0210" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.948) with cleavage site probability 0.709 at FT residue 41" FT misc_feature complement(233345..233410) FT /colour=11 FT /locus_tag="Nham_0210" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(233504..233677) FT /locus_tag="Nham_0211" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWX2 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=3e-24, FT 100% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MQRPAQLATSQSGIAFVIVAGSAAAGAVLLLGTLALWAHYGTAVFFEMLASGIAACF*" FT gene complement(233504..233677) FT /locus_tag="Nham_0211" FT /colour=13 FT sig_peptide complement(233561..233677) FT /colour=11 FT /locus_tag="Nham_0211" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.979) with cleavage site probability 0.474 at FT residue 39" FT misc_feature complement(233573..233638) FT /colour=11 FT /locus_tag="Nham_0211" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(233839..234294) FT /locus_tag="Nham_0212" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWX1 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=6e-83, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0143 category=Unassigned, FT evalue=5e-70, 83.221477% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRVVTGLLAALLVLGHVAASHAVVRIGEDRGGRIGTYVDKYQNLRDTGQSVIIDGLCASACTIVLGAVPHDRICVTSHAA FT LGFHAAWDVGSDGRAVTNSEATHMLYLMYPSAIRRWIKQRGGLTRRMIFLRGRQLTDLYRPCYLNARASAH* FT " FT gene complement(233839..234294) FT /locus_tag="Nham_0212" FT /colour=13 FT sig_peptide complement(234226..234294) FT /colour=11 FT /locus_tag="Nham_0212" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.931 at FT residue 23" FT CDS 234563..235255 FT /locus_tag="Nham_0213" FT /product="sigma-24 (FecI-like) (ECF subfamily)" FT /note="PFAM: sigma-70 region 2: (2.9e-19) sigma-70 region FT 4: (2.4e-12)" FT /note="SPTR top hit: 'Q3PWX0 Sigma-70 region 2:Sigma-70 FT region 4. Nitrobacter hamburgensis X14., evalue=1e-125, FT 100% identity hit'" FT /note="KEGG top hit: 'bja:blr2557 category=Unassigned, FT evalue=1e-80, 66.523605% identity hit'" FT /note="COGs: 'evalue=3e-26 score=112 category=K FT group=COG1595 DNA-directed RNA polymerase specialized FT sigma subunit sigma24 homolog' " FT /note="InterPro IPR000838:IPR007627:IPR007630" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MQQVQSRLAAGPCDDDDELIRRARARDESAIRAIMQANNRKLYRIARGILRNDGEAEDVVQETYVRAFTHLESFRGESRL FT ATWLARIAMNEALGRLRRQHPSVDWTTLEPVASDARIIQFPVSAISEDPEKTMAQREIQHIVEHAVDELPEAFRIVFITR FT VIEGMNVEETAEILDLKPETVKTRLHRARTMLRANVEKKIGPVVMEAFPFAGKRCARLTDAVLGRLGLTK* FT " FT gene 234563..235255 FT /locus_tag="Nham_0213" FT /colour=6 FT CDS 235351..235875 FT /locus_tag="Nham_0214" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWW9 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=2e-89, FT 100% identity hit'" FT /note="KEGG top hit: 'bja:blr2558 category=Unassigned, FT evalue=2e-68, 76.836158% identity hit'" FT /note="COGs: 'evalue=2e-30 score=125 category=S FT group=COG3652 outer membrane protein' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MFVRLSAAIAAVVLLTSGAFAQGAKLTDPQIAHIAYTAGVIDITAAKQALKKSENKEVKAFAADMVRDHEAVNEKALALV FT KKLKVTPEDNDTSRTLSKNAAATLEKLSKLSGAAFDKAYVDNEVAFHKAVDNALETQLIPSASNAELKSLLETGLKIFQG FT HEQHAEHVAAELKK* " FT sig_peptide 235351..235416 FT /colour=11 FT /locus_tag="Nham_0214" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.962 at FT residue 22" FT gene 235351..235875 FT /locus_tag="Nham_0214" FT /colour=13 FT CDS 235886..236227 FT /locus_tag="Nham_0215" FT /product="putative amicyanin precursor protein " FT /note="SPTR top hit: 'Q3PWW8 Putative amicyanin precursor FT protein. Nitrobacter hamburgensis X14., evalue=2e-59, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:blr2559 amcY FT category=Unassigned, evalue=9e-30, 56.637168% identity FT hit'" FT /note="COGs: 'evalue=3e-12 score=63.9 category=C FT group=COG3794 Plastocyanin' " FT /note="InterPro IPR011572" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MKPGGHFLIVAASGIAILGIAVSGISVPARAATIQILMQDLEITPAETTAKVGDTIEWVNEDIFVHSATARNGDWDVELP FT AQKTGTLVLKKPGVVDYYCRYHPNMKARLTIAP* " FT sig_peptide 235886..235981 FT /colour=11 FT /locus_tag="Nham_0215" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.999 at FT residue 32" FT gene 235886..236227 FT /locus_tag="Nham_0215" FT /colour=3 FT misc_feature 235904..235972 FT /colour=11 FT /locus_tag="Nham_0215" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(236253..236825) FT /locus_tag="Nham_0216" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWW7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-101, 99% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="LTGMAAPHDSSRNGLLKTGAAGVGTGIVTPLIQPLIDQINGSPGDLRIALLAVPFALLVLVLILIDSDNPRWAALAGAVV FT TVIAFVCAVNAAIWIDGQISGSENAVRNVLSGLAGGFVGSGILALGVSLLPAGPLDPLAWLPMLVIGTSAGALLALDNAL FT NLDLLSMLYPVWQAGVAICLAMALRRTQPA* " FT gene complement(236253..236825) FT /locus_tag="Nham_0216" FT /colour=13 FT misc_feature complement(order(236274..236330,236361..236411,236433..236498,236544..236609,236631..236681,236721..236786)) FT /colour=11 FT /locus_tag="Nham_0216" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT tRNA complement(236858..236931) FT /locus_tag="Nham_R0004" FT /gene="tRNA-Gly2" FT /note="anticodon CCC, Cove Score=80.62" FT /product="tRNA_Gly" FT /colour=8 FT CDS complement(237035..237439) FT /locus_tag="Nham_0217" FT /product="crcB protein" FT /note="TIGRFAM: crcB protein: (4.1e-23)" FT /note="PFAM: Camphor resistance CrcB protein: (2e-32)" FT /note="SPTR top hit: 'Q3PWW6 Camphor resistance CrcB FT protein. Nitrobacter hamburgensis X14., evalue=1e-100, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0141 category=Unassigned, FT evalue=2e-59, 87.301587% identity hit'" FT /note="COGs: 'evalue=5e-25 score=107 category=D FT group=COG0239 Integral membrane protein possibly involved FT in chromosome condensation' " FT /note="InterPro IPR003691" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MAAGETKTLKWTFILAVAAGGSLGSVARYLVGIGFGRLLGPKFPWGTLFINITGSLLIGLFAGLFAIRWNLPQAVRIFLI FT VGICGGYTTFSTFSLDSFYLIERGEVAAAGAYMIASVVLSVGALIAGIQIVRVL* " FT gene complement(237035..237439) FT /locus_tag="Nham_0217" FT /colour=9 FT misc_feature complement(order(237056..237121,237167..237217,237239..237304,237335..237400)) FT /colour=11 FT /locus_tag="Nham_0217" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(238066..239172) FT /locus_tag="Nham_0218" FT /product="2-deoxycytidine 5-triphosphate deaminase" FT /note="PFAM: 2-deoxycytidine 5-triphosphate deaminase: FT (9.5e-284)" FT /note="SPTR top hit: 'Q3PWW5 2-deoxycytidine FT 5-triphosphate deaminase. Nitrobacter hamburgensis X14., FT evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0140 EC=3.5.4.13 FT category=Unassigned, evalue=0.0, 95.355191% identity hit'" FT /note="COGs: 'evalue=2e-29 score=123 category=F FT group=COG0717 Deoxycytidine deaminase' " FT /note="InterPro IPR010550" FT /codon_start=1 FT /transl_table=11 FT /colour=16 FT /translation="VPFTLPPDANGILPDRMIAAMADAGLILPEYPFVESQIQPASLDLRLGAMAYRVRASFLPGPGATVAERIDELKLHEIDL FT SDGAVLETNCVYIVPLLESLALPPEIVAAANPKSSTGRLDVFTRVIADGTRRFDMIGAGYHGPLYAEISPKTFPVLLREG FT SRLSQVRFRSGDAILDADELDALHARERLVDSDDTEFANGVALSVDLSGENADGFVGYRAKRHTGVIDIDRRGRYAVGEF FT WEPIAARPDGSLILDPGEFYILASKEAVQVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGYAGAGGQGSRAVLEVRSRE FT VPFILEHGQIVGRLVYEKMLARPDAIYGQRIGSSYQAQGLKLSKHFRV* " FT gene complement(238066..239172) FT /locus_tag="Nham_0218" FT /colour=16 FT CDS 239411..240679 FT /locus_tag="Nham_0219" FT /product="O-succinylhomoserine sulfhydrylase" FT /EC_number="2.5.1.48" FT /note="TIGRFAM: O-succinylhomoserine sulfhydrylase: FT (3.5e-217)" FT /note="PRIAM: Cystathionine gamma-synthase" FT /note="PFAM: Cys/Met metabolism FT pyridoxal-phosphate-dependent enzymes: (1.2e-168) aromatic FT amino acid beta-eliminating lyase/threonine aldolase: FT (0.0019)" FT /note="SPTR top hit: 'Q3PWW4 O-succinylhomoserine FT sulfhydrylase (EC 2.5.1.48). Nitrobacter hamburgensis FT X14., evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0139 EC=2.5.1.48 FT category=Unassigned, evalue=0.0, 91.645570% identity hit'" FT /note="COGs: 'evalue=1.0e-122 score=433 category=E FT group=COG0626 Cystathionine beta-lyases/cystathionine FT gamma-synthases' " FT /note="InterPro IPR000277:IPR001597:IPR006234" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="VIPACGFFQAGFFVTVFQGGRAGGHMSQSSPTAQYRTETRLVHSGTMRSQFAETSEALFLTQGYIYDTAEQCEARFKGED FT PGFIYSRYSNPTVAMFEQRMAELEGAEAARATATGMAAVTTAMLAPLRAGDHVVAAKALFGSCRYVVEDLLPRYGIESTL FT VDGLDLEQWRKAMRPNTKSCFIESPTNPTLDVLDIGGIAEIAHQAGARLIVDNVFATPIWQSPLALGADIVVYSATKHID FT GQGRTLGGVILCSNAFVQEHLQTFIRQTGPSISPFNAWVLLKGLETLGVRVRQQTESAAAIADALASHPKVSRLIYPGRP FT DHPQAALVKKQMRAGSTLIGFEVKGGKAGAFRCLNALKLARISNNLGDAKSLVTHPATTTHQRLAPEVRVGLGIGEGFIR FT YSAGLEHKDDLIEDLVAALETV* " FT gene 239411..240679 FT /locus_tag="Nham_0219" FT /colour=10 FT CDS complement(240783..241766) FT /locus_tag="Nham_0220" FT /product="lipolytic enzyme, G-D-S-L" FT /note="PFAM: lipolytic enzyme, G-D-S-L: (1.8e-08)" FT /note="SPTR top hit: 'Q3PWW3 Lipolytic enzyme, G-D-S-L FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0138 category=Unassigned, FT evalue=1e-141, 78.287462% identity hit'" FT /note="COGs: 'evalue=2e-08 score=53.8 category=E FT group=COG2755 Lysophospholipase L1 and related esterases' FT " FT /note="InterPro IPR001087" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTIHSRFSTTAVLAALAIMVMGTSTSTVVAQTAPANATARPTGSAGLSAPASSGVAAARSGTPTQNLSGKATDKVKAVAD FT RPRDIFNRVPCLPPKGVSQSMGSLPHVAAKLAANKPVVIVAFGSSSTQGYGATSPEFTYPNRLAARLHRKYPAAAITVIN FT RGRGGEDAPEMMKRLRSEVIDAKPDMVIWQVGTNAVLRNLDPASTAKTVEAGVATIQASGADLVLVDPQYAPAVNARGEN FT AGRMVSLLSRVAHHRHVGIFPRFEVMRDWHDRQSLPFDTFVTKDGLHMNDWGYACFAQLLGDDIIQSVDQVQAGVSPPQA FT ATAFRPL* " FT gene complement(240783..241766) FT /locus_tag="Nham_0220" FT /colour=11 FT sig_peptide complement(241674..241766) FT /colour=11 FT /locus_tag="Nham_0220" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.966 at FT residue 31" FT misc_feature complement(241680..241745) FT /colour=11 FT /locus_tag="Nham_0220" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(241766..242527) FT /locus_tag="Nham_0221" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWW2 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=1e-141, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0137 category=Unassigned, FT evalue=3e-98, 73.517787% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRAGWTSVLLLLAGLTASAFARADDPPRSCDVPAYLLTSDRPLTRVASAVKAGGPLDILVVGSRSSTIPGAEGDAYPARL FT QAALREKLPGITVNVSVELEPRKTAEDIAPGLGKLALAKKPTLVVWQTGTVDAIRSVDDDTFHDAIDHGVTALQNAGTDV FT VLMNMQYSPRTETMVSPTSYIDNMRVVAQQHDVPLFDRFAIMNHWNESGEFDLFSPVRGADLAKRVHNCLGRALSTFVID FT TAHINPAELGTRR* " FT gene complement(241766..242527) FT /locus_tag="Nham_0221" FT /colour=13 FT sig_peptide complement(242456..242527) FT /colour=11 FT /locus_tag="Nham_0221" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.962 at FT residue 24" FT CDS complement(242524..243759) FT /locus_tag="Nham_0222" FT /product="acyltransferase 3" FT /note="PFAM: acyltransferase 3: (0.0069)" FT /note="SPTR top hit: 'Q3PWW1 Acyltransferase 3 precursor. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0136 category=Unassigned, FT evalue=0.0, 85.436893% identity hit'" FT /note="COGs: 'evalue=6e-45 score=175 category=S FT group=COG4645 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR002656" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSVANQVVGARASAAADGASNDVSIPAPPIERELRLDLFRGLALWLIFIDHLPQHLLTWLTIRNYGFSDATEIFIFISGY FT TAALVYGRVMRERGFVVAAARILKRVWQIYVAHIFLFTIFLAEISYVASSFENPLYTEEMGILDFLKHPDITIVQALLLK FT FRPVNMDVLPLYVALMLFFPPMLALMQRRADLGLALSAGLYALTWQFDLALPAYPNGVWFFNPFAWQLLFVFGAWCALGG FT AKRMSRILSSPVTLWICAAYLLFAFYTTLTWHVPQLNHLMPGIVEQWMYPIDKTNLDVLRFAHFLALAALTVHFLPRDWP FT GLTSPWLRPLVLCGQHSLEIFCIGVFLAFAGQFILAEASGGAGLHFVISLCGILIMSGAAWVFSWYKKVAGKGGSRAKSA FT DGDADLAGGGA* " FT gene complement(242524..243759) FT /locus_tag="Nham_0222" FT /colour=13 FT misc_feature complement(order(242611..242676,242692..242748,242812..242862,242950..243015,243037..243087,243118..243183,243205..243255,243367..243432,243493..243549)) FT /colour=11 FT /locus_tag="Nham_0222" FT /note="9 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 243972..244490 FT /locus_tag="Nham_0223" FT /product="ApaG" FT /note="PFAM: ApaG: (1e-61)" FT /note="SPTR top hit: 'Q3PWW0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=5e-97, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0135 category=Unassigned, FT evalue=3e-71, 95.652174% identity hit'" FT /note="COGs: 'evalue=4e-41 score=160 category=P FT group=COG2967 Uncharacterized protein affecting Mg2+/Co2+ FT transport' " FT /note="InterPro IPR007474" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRVKAGLKPLCFDAFSLCEPVPILGSRPRPCFARKRYRESPMYRAVTRQIEVTVEPNFMPERSSAERGHFFWAYTVVITN FT AGPDTVQLRTRHWIITDASGRKQEVRGEGVVGEQPVLAPGERFEYTSGVPLPTATGFMSGRYQMISIRSGEPFEIDVPTF FT SLDSPDSKRVLN* " FT gene 243972..244490 FT /locus_tag="Nham_0223" FT /colour=9 FT CDS complement(244525..245532) FT /locus_tag="Nham_0224" FT /product="Hsp33 protein" FT /note="PFAM: Hsp33 protein: (3e-95)" FT /note="SPTR top hit: 'Q3PWV9 Hsp33 protein. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0134 hslO FT category=Unassigned, evalue=1e-172, 90.447761% identity FT hit'" FT /note="COGs: 'evalue=3e-73 score=269 category=O FT group=COG1281 Disulfide bond chaperones of the HSP33 FT family' " FT /note="InterPro IPR000397" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTSQMSDPAISLETPVRAPSSVPVDDAVIPFEVSALDLRGRLTRLGPALDELLVRHDYPAPVAKLLGEAVVLTTLLGSSL FT KFDGRFILQTQTDGPVSFLIVDFRAPARLRAYARFDQARLGDALDSGALLGRGHLAMTIDQGPDMSRYQGLVALEGGSLE FT DAAHEYFLRSEQIPTRVRLAVGEEWRRDGNGPKRGWRGGGMLLQFLPKAPERARQADLDPGDAPPDGSAAHTVAEDDAWV FT EGQSLIGTVEDIELIDPDLSGERLLYRLFHERGVRVFPPQALQAQCSCSRDAVEAMLKSFAPQDRSGMVKDGKVAVTCEF FT CSSVYEFTPQQAGAE* " FT gene complement(244525..245532) FT /locus_tag="Nham_0224" FT /colour=9 FT CDS complement(245648..246157) FT /locus_tag="Nham_0225" FT /product="OsmC-like protein" FT /note="PFAM: OsmC-like protein: (6.9e-16)" FT /note="SPTR top hit: 'Q3PWV8 OsmC-like protein. FT Nitrobacter hamburgensis X14., evalue=1e-121, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:blr0920 category=Unassigned, FT evalue=2e-80, 72.727273% identity hit'" FT /note="COGs: 'evalue=9e-09 score=53.8 category=O FT group=COG1765 redox protein regulator of disulfide bond FT formation' " FT /note="InterPro IPR003718" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MDAAELRATQAPIKKRYKTDPKSALITLKARGSIENEGIACKIDTGRALTVAGLHPATGGSGLELCSGDMLLEALVACAG FT VTLKSVATAIDVPLKSGHVTAEGDLDFRGTLGVDKETPVGFESIRLRFDVATDAPQDKLDLLLKLTERYCVVYQTIRNGP FT KVSVEMKRV* " FT gene complement(245648..246157) FT /locus_tag="Nham_0225" FT /colour=13 FT CDS 246434..249229 FT /locus_tag="Nham_0226" FT /product="UTP-GlnB (protein PII) uridylyltransferase, FT GlnD" FT /EC_number="2.7.7.59" FT /note="TIGRFAM: protein-P-II uridylyltransferase: (0)" FT /note="PRIAM: [Protein-PII] uridylyltransferase" FT /note="PFAM: amino acid-binding ACT: (9.3e-08) FT metal-dependent phosphohydrolase, HD subdomain: (1.6e-08)" FT /note="SMART: Metal-dependent phosphohydrolase, HD region: FT (8e-07) " FT /note="SPTR top hit: 'Q3PWV7 Protein-P-II FT uridylyltransferase (EC 2.7.7.59). Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0133 EC=2.7.7.59 FT category=Unassigned, evalue=0.0, 91.585761% identity hit'" FT /note="COGs: 'evalue=0.0 score=853 category=O FT group=COG2844 UTP:GlnB (protein PII) uridylyltransferase' FT " FT /note="InterPro IPR002912:IPR003607:IPR006674:IPR010043" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MDLATTNDAAGAGNDFDTARITGDIDALAAKHAGHEDVFRAAVSRLLKAELAKVRDAAQAKLLRDRHGRRCAERLCFIQD FT EIIRLSFSAATRHLYHSPIPSDGERMAVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEAILYCLWDMGLNVGHA FT TRSVNESIRQARRDMTVRTGILETRFLAGDRALYDELVTRFDTEVVQGTAAEFVTAKLAEREERHRRAGQSRYLVEPNVK FT DGKGGLRDLHTLFWIAKYVYRVHESRELLGCGVFDVREYRTFRRCADFLWSVRCNLHFATGRAEERLSFDLQREIAVRLG FT YTSHPGMQDVERFMKHYFLTAKDVGDLTAILCAKLEDQQAKPAPVLGRMMSRRRPGTELRRVPEGDDFIIDNNRINLAAP FT DVFKRDPVNLIRVFRLAQKNNLAFHPDALRTVTRSRRLINAQLRENPEANRLFMEILTSNDAETVLRRMNETGVLGHFIR FT AFGKIVSMMQFNMYHHYTVDEHLLRCIGILQDIERGGNDELALASELMRKIHPEHRPVIYITTLLHDIAKGRPEDHSIAG FT ARVARRLCPRLGFNASDTELIAWLIEQHLTMSKVAQSRDLSDRKTIENFAAVVQSVEQMKLLTILTTADIRGVGPGVWNG FT WKAQLLRTLYYETEPVLTGGFSEVNRVQRIAEAQAEFRAAFTEWSEPELNAYIARHYPAYWLKVDLAHKIRHARFLRASE FT QGGRKLNINVGFDEARGVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGQALDTIAISREYDRDEDEGRRAA FT RIGEIIEQVIDGRLRLPDVVARRAAGKTRLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASA FT HVATFGERARDVFYVTDLLGARITAPTRQAAIKRALIHLLANGGAAEQSVG* " FT gene 246434..249229 FT /locus_tag="Nham_0226" FT /colour=9 FT CDS 249672..251870 FT /locus_tag="Nham_0227" FT /product="Penicillin-binding protein 1A" FT /EC_number="2.4.1.129" FT /note="TIGRFAM: Penicillin-binding protein 1A: (1e-248)" FT /note="PRIAM: Peptidoglycan glycosyltransferase" FT /note="PFAM: glycosyl transferase, family 51: (1e-88) FT penicillin-binding protein, transpeptidase: (1e-48)" FT /note="SPTR top hit: 'Q3PWV6 Peptidoglycan FT glycosyltransferase (EC 2.4.1.129). Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0132 EC=2.4.1.129 FT category=Unassigned, evalue=0.0, 82.833787% identity hit'" FT /note="COGs: 'evalue=1.0e-171 score=595 category=M FT group=COG0744 Membrane carboxypeptidase FT (penicillin-binding protein)' " FT /note="InterPro IPR001264:IPR001460:IPR011816" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MVWGRKKKRGGRKEPVFGGVAASLAELRLNPLDRITVADDKPASRAAPRKAAGPGGDGSRERKPSQNRKGRKGRARKRTR FT GRLSRLFYWGAVLALWGGIAIVGVVVYVGAHLPPIQSLEIPKRPPTIKIVGADGSVLATRGEMAGSNVSLKDLPPYLPKA FT FIAIEDRRFYSHYGVDPIGILRAAVTNVLHMGVSQGGSTLTQQLAKNLFLTQERTLERKLQEVELALWLERKHTKAQILE FT LYLNRVYFGSGAYGVEAAAQKYFGKPAKDVTLAEAAMLAGLVKSPSRLAPNRNPEGAEARAKVVLAAMADAHFITEQQAR FT AATTRPSYAVKPVGAGTINYVADWVGEVLDDLVGQVDQNIVVETTIDPKLQSVAEAALIDELAAKSVKFNVSQGALVAMT FT PDGAIRAMVGGRNYGDSQFNRAVMAKRQPGSAFKPFVYLTAIEAGLTPETIRQDAPLDIKGWRPENYGHEYFGAVTLTQA FT LAMSLNTVAVRLGLEVGPVNVVRTAHRLGITSKLEPNASIALGTSEVSPLELVGAYAPFANGGYAANPHIVDRIRTVDGN FT KLLYARAQAAPGRVIDPRSVAMMNTMMEQTLISGTARKAGIPGWTAAGKTGTSQDFRDAWFVGYTAKLVTGVWLGNDDNS FT PTRKATGGGLPVEVWTRFMRTAHEGMQPEPIPGTQRGGPLPDIAQLGRQVIAPAPAAPASVGGPPQPVRANVRPEAASGL FT DGWLVDRLFGGR* " FT gene 249672..251870 FT /locus_tag="Nham_0227" FT /colour=9 FT misc_feature 249927..249995 FT /colour=11 FT /locus_tag="Nham_0227" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(252028..252864) FT /locus_tag="Nham_0228" FT /product="protein of unknown function DUF45" FT /note="PFAM: protein of unknown function DUF45: (1.7e-14)" FT /note="SPTR top hit: 'Q3PWV5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-164, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0131 category=Unassigned, FT evalue=1e-154, 92.805755% identity hit'" FT /note="COGs: 'evalue=3e-38 score=152 category=R FT group=COG1451 metal-dependent hydrolase' " FT /note="InterPro IPR002725:IPR006025" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MICFCAERFDWRRIWQNPGDTPASGFTDMARALLYRRPAEPSRLLVKHGSQIYSVRLRRHRRARRYTLRIHPSDREAILT FT MPPRGTLVEAKDFAQRHGGWIAARLGRLPKAAPFHHGAVIPLRGVAHRIVHRTGERGTVWTETRDSGERILCVAGGLDYL FT DRRVHDFLKREARHDLQKATQRYADTLGVKVKRLSIRDQSSRWGSCTSSGSLSFSWRLILAPPFVLDYLAAHEVAHLVEM FT NHSPRFWKVVARICNHVERAKKWLDAEGNDLHRYGIQD* " FT gene complement(252028..252864) FT /locus_tag="Nham_0228" FT /colour=11 FT CDS complement(253067..254401) FT /locus_tag="Nham_0229" FT /product="polyhydroxyalkanoate depolymerase, FT intracellular" FT /note="TIGRFAM: polyhydroxyalkanoate depolymerase, FT intracellular: (4.9e-264)" FT /note="PFAM: PHB de-polymerase-like: (5.3e-159)" FT /note="SPTR top hit: 'Q3PWV4 Polyhydroxyalkanoate FT depolymerase. Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0130 category=Unassigned, FT evalue=0.0, 89.414414% identity hit'" FT /note="COGs: 'evalue=1.0e-180 score=623 category=I FT group=COG4553 Poly-beta-hydroxyalkanoate depolymerase' " FT /note="InterPro IPR009656:IPR010915" FT /codon_start=1 FT /transl_table=11 FT /colour=5 FT /translation="MPIGEFGRPPDMPAEVSPAMTAPMYWMYEMAQASLNPARAVTDATRMLFQNPLNPWSHTEFGKSVAAGCELFERTTRRYG FT KPEWGLHETEVNGVRTPMEIRSVWEKPFCRLLYFDRMHVRPLRKPQPRVLLVAPMSGHYATLLRGTVEAFMPTHDVYITD FT WTDARMVPVSEGRFDLDDYVDYLIEMLHVLGGNVHIIAVCQPSVPVLAAVSVMEAEGDPCVPLSMTLMGGPIDTRKNPTA FT VNNLAAAKGTDWFRNNVITKVPFPHPGVMRDVYPGFLQLNGFITMNLDRHMEAHKSLFKNLVKGDGDLVDKHRDFYDEYL FT AVMDLTAEYYLQTVDLVFVKHALPNGEMTHRGRPVDPSKITRVALMTVEGEKDDISGLGQTEAAHALCTSIPERRRAHYM FT QKGVGHYGVFNGSRFKSEIVPRINDFMQSNARHPAQLSRAAAAE* " FT gene complement(253067..254401) FT /locus_tag="Nham_0229" FT /colour=5 FT CDS 254849..256243 FT /locus_tag="Nham_0230" FT /product="periplasmic sensor signal transduction histidine FT kinase" FT /note="PFAM: ATP-binding region, ATPase-like: (1.2e-19) FT histidine kinase A-like: (2e-08)" FT /note="SPTR top hit: 'Q3PWV3 ATP-binding region, FT ATPase-like:Histidine kinase A, N-terminal. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0110 category=Unassigned, FT evalue=0.0, 90.090090% identity hit'" FT /note="COGs: 'evalue=5e-21 score=96.1 category=T FT group=COG0642 Signal transduction histidine kinase' " FT /note="InterPro FT IPR000577:IPR003594:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MIPKIGSHFSGSCSKLWTMTDVDASDFRHPRRYVRLDTILRLRWLAALGQLAAIFVVAQGLEFELPIIPCVTIVGLSSLL FT NLALQVIFNPMQRLEPRYAAGLLALNIAELAALLFFTGGLQNPFSYLFLAPVLISATALPTRMTMALGVFAVASATVLGF FT THLPLPWDANDPLILPRIYLAGVWLSIVLAIGVTSLYTFQVTEQARKLSDALAATELVLTREQHLTQIDGLAAAAAHELG FT TPLSTIFLISRELEKALQENGAPDPQRLAGDLGVVREQAQRCRDILAKIAQLSSSGAPFDRMPLSTLIEETVAPHRDFGI FT DITIRIAVADDDEPVGMRNPAILYGVGNILENAVDFARSAVEVNAWWNSETVEIVISDNGPGIAPDILKRIGEPYLSRRR FT NVSDAQGGRAGLGLGIFIARTLLERTGATVSFANRTFPEHGAVVQIVWPRLRFETSKTVAETMV* FT " FT gene 254849..256243 FT /locus_tag="Nham_0230" FT /colour=15 FT misc_feature order(254963..255031,255041..255109,255143..255211,255275..255343,255380..255448) FT /colour=11 FT /locus_tag="Nham_0230" FT /note="5 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 256335..256889 FT /locus_tag="Nham_0231" FT /product="response regulator receiver domain protein FT (CheY-like)" FT /note="PFAM: response regulator receiver: (2.2e-25)" FT /note="SPTR top hit: 'Q3PWV2 Helix-turn-helix, Fis-type. FT Nitrobacter hamburgensis X14., evalue=2e-98, 99% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0111 category=Unassigned, FT evalue=9e-95, 95.108696% identity hit'" FT /note="COGs: 'evalue=4e-65 score=240 category=K FT group=COG4567 Response regulator consisting of a CheY-like FT receiver domain and a Fis-type HTH domain' " FT /note="InterPro IPR001789:IPR002197" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="VNAAPDVIPQADRSLLIVEDDKPFLERLSRAMETRGFNVTSCDSVSDGLAHIGKSAPAFAVVDLRLGDGNGLDVVSALKR FT ERPDARAIVLTGYGNIATAVTAVKMGAVDYLSKPADADDVVAALLASGTEKSELPQNPMSADRVRWEHIQRIYEMCNRNV FT SETARRLNMHRRTLQRILAKRAPR* " FT gene 256335..256889 FT /locus_tag="Nham_0231" FT /colour=6 FT CDS complement(256918..257409) FT /locus_tag="Nham_0232" FT /product="protein of unknown function DUF1052" FT /note="PFAM: protein of unknown function DUF1052: FT (9.7e-101)" FT /note="SPTR top hit: 'Q3PWV1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=2e-91, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0112 category=Unassigned, FT evalue=2e-80, 88.957055% identity hit'" FT /note="COGs: 'evalue=9e-45 score=172 category=S FT group=COG5321 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR009394" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MESNAVHIALVPPPDRRQSETALAIARGTGRFLRSLGFCCVSELPLPSGRRADLVALNARGDIWIVEIKSSAEDLRADRK FT WQDYRAHCDRLFFAFTRDLPCGIFPTDTGLIVADAYGAYLHCEAPEHRLPAPTRKAMMLRFAMAAAQRLNRLADPQGHAE FT GEF* " FT gene complement(256918..257409) FT /locus_tag="Nham_0232" FT /colour=13 FT CDS 257533..258225 FT /locus_tag="Nham_0233" FT /product="beta-lactamase-like" FT /note="PFAM: beta-lactamase-like: (2.4e-33)" FT /note="SPTR top hit: 'Q3PWV0 Beta-lactamase-like. FT Nitrobacter hamburgensis X14., evalue=1e-134, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0113 EC=3.1.2.6 FT category=Unassigned, evalue=1e-109, 84.259259% identity FT hit'" FT /note="COGs: 'evalue=4e-32 score=131 category=R FT group=COG0491 Zn-dependent hydrolases including FT glyoxylases' " FT /note="InterPro IPR001279" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MAQENQQENQPDDQSAAKAGVTIIPVTPFRQNCTLLWCETTRDAVVIDPGGDVPLIRTSIEQSGVTVRRIWLTHGHIDHV FT GGAAELRDALKVPIEGPHIADKFLLDHVVESGRGYGMTGMRNFTPDRWLEEGEKVKIGELEFDVLHCPGHSPGSVVFFNR FT EMRFAHVGDVLFNGSVGRTDLPGGSHATLIKSITDKLLPLGDDVAFICGHGPGSSIGHERASNPFLTDGM* FT " FT gene 257533..258225 FT /locus_tag="Nham_0233" FT /colour=11 FT CDS complement(258295..258711) FT /locus_tag="Nham_0234" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWU9 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=1e-74, FT 100% identity hit'" FT /note="KEGG top hit: 'rpa:RPA0566 category=Unassigned, FT evalue=3e-51, 69.064748% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MVRRVIGTAAIAVALVWPVSAMAQGVPGGMERGAREGERAGGPVGAIVGGTVGAVVGGVAGVLGVEQRPRFHRYVVEQHR FT PSYHYREPVRVGAVLPESGVTYYEVPAEYGAPQYRYTVVNDRTVLVDPRTHRIVDVIE* FT " FT gene complement(258295..258711) FT /locus_tag="Nham_0234" FT /colour=13 FT misc_feature complement(order(258520..258585,258631..258696)) FT /colour=11 FT /locus_tag="Nham_0234" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(258640..258711) FT /colour=11 FT /locus_tag="Nham_0234" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.997 at FT residue 24" FT CDS complement(258873..261698) FT /locus_tag="Nham_0235" FT /product="PAS/PAC sensor hybrid histidine kinase" FT /note="PFAM: PAS: (6.6e-07) response regulator receiver: FT (1.6e-21) ATP-binding region, ATPase-like: (1.9e-29) FT histidine kinase A-like: (6.2e-12)" FT /note="SMART: PAC motif: (5.4e-06) " FT /note="SPTR top hit: 'Q3PWU8 PAS. Nitrobacter hamburgensis FT X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0114 category=Unassigned, FT evalue=0.0, 86.170213% identity hit'" FT /note="COGs: 'evalue=4e-32 score=133 category=T FT group=COG4191 Signal transduction histidine kinase FT regulating C4-dicarboxylate transport system' " FT /note="InterPro FT IPR000014:IPR000700:IPR001610:IPR001789:IPR003594:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MLEKESVGLEAFLAGGGEMADLTRRFDWAGTSVGAPEIWPQSLRTAVRIILNTNHPMLIWWGPDLIQFYNDGFRQTLGPE FT RHPGALGERGRDCWGEVWDIVGPQIEHVMAGRGATWHEDQLVPVTRHGRLEQVYWTYGFSPIDEDHGVGGVLVVCRDVTR FT EHLAKVALQERETELARVQAIGRIGGLEVDLHTGHRSRKSPEYLKIHGLPPEAVNESHEDWLRRVHPDDRAVAEGQFIDA FT VRGGDREYAVRYRIIRPSDGETRWISARSVIERDADGKAIRLFGAHTDITDQVEAVRAIRQREEEFRALAEALPHHVWTA FT KPDGELNWCNTRVYDYVGAKPDELVGNDWNKVVHPDDASAAAAAWTHAVATGDPYEIEFRLRGADGSYHWFLARAVPARD FT EDGRITRWIGTNTDVHDQKLFAGKLAELNATLAERVEEKTRERDRIWNVSQDLLLVTDHDGICRSVNPAWTRTLGWSEAV FT LLGRTAEWIEHPDDIIKTRVEVRRLARGKATVRFENRLRHKDGSYRWLSWTAVPDQNLIYAVARDITAEKAATERLRAAE FT EALRQSQKMEAVGQLTGGIAHDFNNLLTGIVGSLDLMQTRLNQGRTDRAGRYIEAAMASANRAAALTHRLLAFARRQPLV FT PKPVDANHLVLSLEDLLRRTIGEAIDLEIAPSGRLWQTLCDPNQLESALLNLAINARDAMPGGGKLAIATANMTVGAADA FT GSSAVRPGDYVCITVTDTGTGMTAEVAARAFDPFFTTKPIGQGTGLGLSMIYGFARQSNGHIAFDTAPGRGTSIRLCLPR FT HDDVAEADQASPANKDRTAATGETVLVVEDEPVVRGVIIEMLHDQGYLTREAADGVAGLRILQLDKPVDLLLTDIGLPGM FT NGRQLADQARELRPDLKILFMTGYAENAANAEGFLLPGMDMITKPFDLGHLSQRVRDIISG* FT " FT gene complement(258873..261698) FT /locus_tag="Nham_0235" FT /colour=15 FT CDS complement(261958..262962) FT /locus_tag="Nham_0236" FT /product="OmpA/MotB" FT /note="PFAM: OmpA/MotB: (3.5e-30)" FT /note="SPTR top hit: 'Q3PWU7 OmpA/MotB precursor. FT Nitrobacter hamburgensis X14., evalue=0.0, 99% identity FT hit'" FT /note="KEGG top hit: 'hch:HCH_01122 category=Unassigned, FT evalue=7e-60, 42.331288% identity hit'" FT /note="COGs: 'evalue=1e-25 score=110 category=M FT group=COG2885 Outer membrane protein and related FT peptidoglycan-associated (lipo)proteins' " FT /note="InterPro IPR006664:IPR006665" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VCSGFPPASRFSKYWNGSHGMFKRIAMLAIAMGLFGAIAAHADATIPSKDIANARDNALLKRYEGSFIMSYEKLAFTDFK FT VPLSKLEKAGNDRRDRMNNQVFKPKEEIEIEGARTRIAYLLPAERSPLEVLRNYQDVVKAAGGEVLYACKGEECGGDPER FT SSDGGGDGYVTVQAFQLKDDLYCKALNERTVALVHIVEPKPREQKMVVVKADEMARSIGATGRIALYGIFFDTAKADLKP FT ESNPTLAEIAGLLNADPKLAVLIVGHTDNQGAFDYNLDLSRRRAEAVVKTLAANFRVEPRRLRAAGVGMMAPAASNDAED FT GRAKNRRVEVVKLN* " FT gene complement(261958..262962) FT /locus_tag="Nham_0236" FT /colour=9 FT sig_peptide complement(262834..262962) FT /colour=11 FT /locus_tag="Nham_0236" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.990 at FT residue 43" FT misc_feature complement(262837..262902) FT /colour=11 FT /locus_tag="Nham_0236" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(263148..264071) FT /locus_tag="Nham_0237" FT /product="peptidase M48, Ste24p" FT /note="PFAM: peptidase M48, Ste24p: (2.2e-28)" FT /note="SPTR top hit: 'Q3PWU6 Peptidase M48, Ste24p FT precursor. Nitrobacter hamburgensis X14., evalue=1e-175, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0189 htpX EC=3.4.24.84 FT category=Unassigned, evalue=1e-153, 89.967638% identity FT hit'" FT /note="COGs: 'evalue=3e-40 score=159 category=O FT group=COG0501 Zn-dependent protease with chaperone FT function' " FT /note="InterPro IPR001915" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSYFRTAILLAGLTGLFMGVGYLIGGAAGAMIALVVAAATNMFAYWNSDRMVLSMYGAHEVDAGTAPDLHRLVAELAARA FT ALPMPRVFLMDNPQPNAFATGRNPENAAVAVTTGLMQSLRREELAGVIAHELAHIKHHDTLLMTITATIAGAISMLAQFG FT MFFGGGNRGNNGPGIIGSLAMMILAPLGAMLVQMAISRTREYAADEMGARICGQPMWLASALAKIDDAAHQVPNREAERA FT PATAHMFIINPLSGHGMDNLFATHPSTENRIAALQRLAGQSGSATPDPAPAPRGPWNGGAPRRGPWG* FT " FT gene complement(263148..264071) FT /locus_tag="Nham_0237" FT /colour=9 FT misc_feature complement(order(263496..263552,263583..263648,263961..264026)) FT /colour=11 FT /locus_tag="Nham_0237" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(263955..264071) FT /colour=11 FT /locus_tag="Nham_0237" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.997) with cleavage site probability 0.587 at FT residue 39" FT CDS complement(264185..264736) FT /locus_tag="Nham_0238" FT /product="GCN5-related N-acetyltransferase" FT /note="PFAM: GCN5-related N-acetyltransferase: (2.3e-13)" FT /note="SPTR top hit: 'Q3PWU5 GCN5-related FT N-acetyltransferase. Nitrobacter hamburgensis X14., FT evalue=1e-102, 100% identity hit'" FT /note="KEGG top hit: 'bja:blr0463 EC=2.3.1.- FT category=Unassigned, evalue=7e-73, 77.586207% identity FT hit'" FT /note="COGs: 'evalue=1e-49 score=189 category=M FT group=COG1247 Sortase and related acyltransferases' " FT /note="InterPro IPR000182" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MPDPVIRAANEADLPAITAIYDHAVRFGTATFELDPPDLTEMTRRFGALRDGGFPYLVAELAGAVVGYAYAGPYRPRPAY FT RFTVENSIYLAPASHRRGVGIQLLRRLIAECEARGYRQMIAVIGDSANAGSIGVHVRAGFKMIGTHPSVGLKFGRWLDTV FT MMQLALGDGSATIPTGEATRNPG* " FT gene complement(264185..264736) FT /locus_tag="Nham_0238" FT /colour=9 FT misc_feature complement(264515..264580) FT /colour=11 FT /locus_tag="Nham_0238" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(264818..266176) FT /locus_tag="Nham_0239" FT /product="putative outer membrane protein " FT /note="SPTR top hit: 'Q3PWU4 Possible outer membrane FT protein precursor. Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0188 category=Unassigned, FT evalue=0.0, 74.891775% identity hit'" FT /note="COGs: 'evalue=2e-15 score=77.4 category=M FT group=COG3637 Opacity protein and related surface FT antigens' " FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MKRILLGVLLAGTAMSAQAADLAPRPYTKAPVMAPVYDWTGFYLGVNAGLGLGRDRTVNDFGDGTGNSTYLQPLGAIGGG FT QIGYNWQTNSFLGPLVLGVEADIQGADMTDNRTNINGVQYNQKLDWFGTARGRIGLVNGPTLTYLTGGYAYGNVSTRGVA FT DGVPFAFSGNRSGWTWGSGVEAALGGNWTGKIEYLYVDLGNRTDVFDGGAQALHSELRENIFRAGLNYRIGGNSTYAPVA FT TANWNGFYLGGNVGSGTGRDRTTVTNLATGESAAFNLAPDGFIGGVQAGYNWQAGNIVYGLETDFQGSTMEDNKTCIGCE FT PGASLNFNAKLQWLGTVRGRLGYAVGPSLFYATGGFAYGNVKTAINEVNFSDTRTGWTVGGGIETPFTLFGLFGPNWTST FT TEYLYVDLGKSTNGFTLANTTGEPGALQTGVQEHIFRTGLNYHFNTPVVARY* " FT gene complement(264818..266176) FT /locus_tag="Nham_0239" FT /colour=9 FT sig_peptide complement(266117..266176) FT /colour=11 FT /locus_tag="Nham_0239" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.999 at FT residue 20" FT CDS 266479..269040 FT /locus_tag="Nham_0240" FT /product="DEAD/DEAH box helicase-like" FT /note="PFAM: helicase-like: (3.5e-13) DEAD/DEAH box FT helicase-like: (7.5e-32)" FT /note="SPTR top hit: 'Q3PWU3 Helicase, FT C-terminal:DEAD/DEAH box helicase, N-terminal. Nitrobacter FT hamburgensis X14., evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0187 category=Unassigned, FT evalue=0.0, 88.131610% identity hit'" FT /note="COGs: 'evalue=0.0 score=692 category=R FT group=COG1201 Lhr-like helicases' " FT /note="InterPro IPR001410:IPR001650:IPR011545" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VGIADREEEQPALPDDFLRWFAARRWSPRAHQLALLQKARAGRSALLIAPTGAGKTLAGFLPTLVELSCFPSPTGAEGSE FT TRGLHTLYISPLKALAVDIARNLEAPIAEMTLPIKVETRTGDTPMLRRQRQRRYPPDILLTTPEQMALLLASDDAPFLFS FT SLQRVVLDELHALVTSKRGDLLSLALAQLWRLAPRMRTIGLSATVAEPESLARFLVPQPEGKIVSADIVVAGGAAAPIVE FT MLDTRERLPWAGHSARHALGEIYDLIRRNRTTLVFVNTRSQAEMLFQDLWRVNDDGLAIALHHGSLDVAQRRKVEQAMTE FT GRLRGVVCTSSLDLGVDWGDVDLVINIGAPKGASRLMQRIGRANHRLDEASRAVLVPANRFEVLECRVAIDAVNENAQDT FT PPLRTGALDVLAQHVLGCACGAPFHADQLYDEVRTAAPYAALTRADFDDVIDFVATGGYALKSYERFARIRQDKANSSES FT RWRVANPKVRQSYRLNVGTIVEEAMLKVKLVRSRHGGQNRGKGSTGTIARGGRMLGEIEEYFIEGLVVGDTFVFGGEIVR FT YEVLVEDQVYVSRANDDSPKVPSYMGGKFPLSTYLAERVRNLLDDKRAWSSLPDQVRQWLSLQSHFSRVPHAREMVVETF FT PRAGKHYLVCYPFEGRLAHQTLGMLLTRRLERMRVRPLGFVANEYALAVWMLGDTSSMIGQGRLNLDALFDPDMLGDDLE FT AWLAESALMKRTFRSCAIISGLIARRSTSDEKTRRQVLFSTDLVYDVLRKHQPDHLLLRAARTDAAAGLLDIRRLSDMLA FT RIRGRITHKPLDRISPLAVPVMLEIGREAIYGEASDELLAEAAEELVREATGT* " FT gene 266479..269040 FT /locus_tag="Nham_0240" FT /colour=11 FT CDS 269081..269776 FT /locus_tag="Nham_0241" FT /product="metallophosphoesterase" FT /note="PFAM: metallophosphoesterase: (0.0012)" FT /note="SPTR top hit: 'Q3PWU2 Metallophosphoesterase. FT Nitrobacter hamburgensis X14., evalue=1e-129, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0186 category=Unassigned, FT evalue=3e-99, 80.995475% identity hit'" FT /note="COGs: 'evalue=4e-41 score=161 category=R FT group=COG1407 ICC-like phosphoesterases' " FT /note="InterPro IPR004843" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPGLVPAMTARIEIVSVAGVSFVADLSGALYWEHERLLVVSDLHLEKGSSFAMRGVLLPPYDTVATLGRLAAVVARFDPR FT TVIALGDSFHDRDAHERLIAPDRDALSALQARCDWIWISGNHDPALPDDLGGAIASEVAIGAIVFRHEPTGAFGEIAGHL FT HPKARVSTRGRSIERRCFASDGARVVMPAFGAYAGGLSIRDEAFARLFSADFIAHVLGDRRMHAIAAARCY* FT " FT gene 269081..269776 FT /locus_tag="Nham_0241" FT /colour=11 FT CDS complement(269777..270640) FT /locus_tag="Nham_0242" FT /product="transcriptional regulator, LysR family" FT /note="PFAM: regulatory protein, LysR: (5.9e-21) LysR, FT substrate-binding: (7.6e-34)" FT /note="SPTR top hit: 'Q3PWU1 Regulatory protein, FT LysR:LysR, substrate-binding. Nitrobacter hamburgensis FT X14., evalue=1e-158, 99% identity hit'" FT /note="KEGG top hit: 'bja:bll1150 category=Unassigned, FT evalue=1e-124, 78.745645% identity hit'" FT /note="COGs: 'evalue=1e-33 score=137 category=K FT group=COG0583 Transcriptional regulator' " FT /note="InterPro IPR000847:IPR005119" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="VLDLELLRSFVSVVDAGGFTRAGERVHRTQSTVSQQIKRLEDDFGRPLLNRVGKKVIPTEDGELLLAYARRLLALAEETR FT DVLARPKGDGVVRLGIPEDFAAYRLTELLASFMRSRPGLRLDVRADQGKYLRRELERGELDLALLKRPAGEKGGISTWPE FT RVHWVTSKAHPVNPATHSVPLIGFPPGCLYRAGAIHAIESAGRAWHMAYTSSSLAGIQAAVAAGLGLSILSEIAIQPGHR FT VLTAKDGFAPIDKTEVALVAAPEASPATLRVADLLADFCNSVQKAAA* " FT gene complement(269777..270640) FT /locus_tag="Nham_0242" FT /colour=6 FT CDS 270738..271676 FT /locus_tag="Nham_0243" FT /product="protein of unknown function DUF6, transmembrane" FT /note="PFAM: protein of unknown function DUF6, FT transmembrane: (1.9e-17)" FT /note="SPTR top hit: 'Q3PWU0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-173, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:blr1151 category=Unassigned, FT evalue=1e-125, 76.333333% identity hit'" FT /note="COGs: 'evalue=2e-04 score=39.9 category=R FT group=COG5006 permease DMT superfamily' " FT /note="InterPro IPR000620" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTVVPSSLASPAAAPRPAFNTLPLAIGAFCLLWSFAFVAGKVGVTDCPPLILLAARFLLAGILIFGIAVLRGEGWSLSRR FT DVAIFAVLGVANNAMYLGLGYTGLQTVSAGLSGLIVSANPVFTAVLAAVFLGESLTWRKVMGLLLGIAGVAFIVWHRMSV FT GTDSLHGILFTLASLASIVAGTILFKVLAPKGNLWLGNGVQSLAGGLALLPFASALSDVSDIVPSWRLLAAFVYLVLCGS FT ILAYVLWFHLLKVCGATAASAYHFLMPPLAILFAWLVLGEHVAARDLLGIVPVALGIYLVTRPAAGPAQHAS* FT " FT gene 270738..271676 FT /locus_tag="Nham_0243" FT /colour=13 FT misc_feature order(270798..270857,270885..270944,270981..271049,271062..271130,271155..271208,271236..271304,271317..271385,271413..271481,271500..271568,271596..271655) FT /colour=11 FT /locus_tag="Nham_0243" FT /note="10 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(271734..272531) FT /locus_tag="Nham_0244" FT /product="conserved hypothetical protein" FT /note="TIGRFAM: conserved hypothetical protein: FT (1.1e-133)" FT /note="SPTR top hit: 'Q3PWT9 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0185 category=Unassigned, FT evalue=1e-121, 84.905660% identity hit'" FT /note="InterPro IPR011734" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRTRAACSTIGLMLVLLLGSTFVAGDARAEHLIVSVSNHRVTVTPNYSGEELVLFGSIERDGGAPVPRAGYDLVVTISGP FT RVDMVTRRKERTLGIWVNADSRQFLQVPSYLAVFANRPLDKIAAPDILRRQQLGLNNVLLTQRVGPDYADVVASDPFRRA FT FIRLRAEHGLYRENTAAVTFLTPTLFRAGIPLPAEVPTGTYTIGIKLLAGGALIAKTDTAFEIVKVGFEQFVATAARQHG FT LIYGLATALMALTAGWMASIVFRKD* " FT gene complement(271734..272531) FT /locus_tag="Nham_0244" FT /colour=13 FT misc_feature complement(order(271746..271811,272460..272516)) FT /colour=11 FT /locus_tag="Nham_0244" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(272454..272531) FT /colour=11 FT /locus_tag="Nham_0244" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.589 at FT residue 26" FT CDS complement(272528..273454) FT /locus_tag="Nham_0245" FT /product="protein of unknown function DUF81" FT /note="PFAM: protein of unknown function DUF81: (3.3e-31)" FT /note="SPTR top hit: 'Q3PWT8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-167, 99% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0184 category=Unassigned, FT evalue=1e-152, 89.869281% identity hit'" FT /note="COGs: 'evalue=4e-12 score=65.8 category=R FT group=COG0730 permeases' " FT /note="InterPro IPR002781" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VQLYLPIADLPVNVFLILAMGAAVGFVSGMFGIGGGFLMTPLLIFVGIAPAVAVATVASHIAASSFSGALSYWRKRAIDP FT ILALVLLSGAMAGTMLGVWTFTLLRSLGQLDLLIALSYMVLLSGVGAAMFWEGLRAMLRTRQGQTVPLRRSGGHGWIHGL FT PLKVRFKRSKIYLSVIPVVAIGLFIGFIGAIMGIGGGFILVPLLIYLLRVPTSTVIGTSMIITLITMTLATVLHAATNHL FT VDVVLALILMTGGVSGAQFGARAGQRIRGEHLRLLLGLLILAVGIRFAVELGIRPADLYTVRETMGGP* FT " FT gene complement(272528..273454) FT /locus_tag="Nham_0245" FT /colour=11 FT misc_feature complement(order(272576..272641,272672..272725,272747..272812,272873..272938,273053..273118,273149..273214,273275..273340,273353..273418)) FT /colour=11 FT /locus_tag="Nham_0245" FT /note="8 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(273863..274588) FT /locus_tag="Nham_0246" FT /product="transposase, IS4" FT /note="PFAM: transposase, IS4: (0.00012)" FT /note="SPTR top hit: 'Q3PZR2 Transposase, IS4. Nitrobacter FT hamburgensis X14., evalue=1e-135, 100% identity hit'" FT /note="KEGG top hit: 'gme:Gmet_2883 category=Unassigned, FT evalue=2e-60, 55.895197% identity hit'" FT /note="InterPro IPR002559" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MGQHQVKRLLSSEHFSVDGTLIEAWASIKSFRRKDGGDQDSDGPGRNAERSFHNEKRCNETHQSTTDPEARLYKKGGGQP FT AKLCYIGHALMENRNGLAVLGGVSRATGTAERDQALALIDCHRGQSERRITLGADKAYDVTAFVEDLRRRSVTPHIAIDG FT HLSKTGKPRKTAIDQRTLRHAGYAVSQRCRKRIEEVFGWIKASAGLAKIKLRGRDRVNATFTLALAAYNLIRLPKLLAAA FT A* " FT gene complement(273863..274588) FT /locus_tag="Nham_0246" FT /colour=11 FT CDS complement(274623..274973) FT /locus_tag="Nham_0247" FT /product="ISGsu3, transposase " FT /note="SPTR top hit: 'Q3PWT6 ISGsu3, transposase. FT Nitrobacter hamburgensis X14., evalue=1e-60, 100% identity FT hit'" FT /note="KEGG top hit: 'gsu:GSU2772 category=Unassigned, FT evalue=1e-26, 54.368932% identity hit'" FT /note="COGs: 'evalue=4e-09 score=53.1 category=L FT group=COG3666 Transposase and inactivated derivatives' " FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MRGSDERSGSLFSYVDLEARIRSDHPLRTIRQIANAALNDLSRDFDKLYTAFGRPSIAPEKLLRAMLLQAFYGIRSERQL FT MERLEFDLLLRWFVGLGVDDPVWGPLDLLEEPRPIA* " FT gene complement(274623..274973) FT /locus_tag="Nham_0247" FT /colour=11 FT CDS complement(275056..278316) FT /locus_tag="Nham_0248" FT /product="Sel1-like" FT /note="SMART: Sel1-like: (5.8e-13) " FT /note="SPTR top hit: 'Q3PWT5 Sel1-like repeat. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0183 EC=3.5.2.6 FT category=Unassigned, evalue=0.0, 73.892989% identity hit'" FT /note="COGs: 'evalue=8e-22 score=100 category=R FT group=COG0790 FOG: TPR repeat SEL1 subfamily' " FT /note="InterPro IPR006597" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MNSRGSWSEDGIEPSVRERAEAAARRAGVSLNEWLSSTVGGAMPDSRLAQSPVPSQDSHQDNHDVADIHQRLDSITRQID FT QLSSPATRGEPAVARQLNDAISRLDARLARVSAQAPADDSQHRADRVERAAAEVYSRSPRPDVASLEFAIAEVAARQHEL FT DGAGAMPPRSSPPVVPAMTTSRPAPDFSGLEQQLFKITSQIESLQRPDGIEQSIAAFRSELAGIRHVITEALPRRAIESI FT ENEIRSLSQRIDDVRQNGSDGQALANIERALNEIYDALRSLKPAEQLAGFDEAIRNLGNKIDTIVRSSGDSGMMQQLENA FT IGALRGIVSNVASNDALARLSDDLTLLSSKVDQLGRSEGNSDSFAALEQRVVAALTATLENRERPASGGSSEQLEEAVQA FT LSDRLDSLPAGHDSSSALAHLEQRVSLLLERLETAGGHSGTNLAGTNLGRVEEGLQDILRHLERQQAGLAALTESGPRST FT GPTMDSEVVEAIKRELSEMRFCQSETDRHTQDSLEAVHNTLGHVVDRLAMIEGDLRAVRAMPAAQAGPARGAIPEPPAGL FT PPRPELPNPVLSQMAAPQPAAAASASASIPPRAIGDILISRDTFDPGHGPQSATVRPPQPRPAIDPDLPPDHPLEPGTRP FT EGRPASPSERIAASESAIGDIAEPPREQSGSSFIAAARRAAQAAAAAAPSSDKAGRTKVAIEPARPATGGSSITSKIRSL FT LVGASVVAIVLGSFQLAMSLFDGTSRTAVSETSPVAATAAKPPADAEAAPAPATAIPAMPSMTSPTPIDRQSMISPPSGG FT SVAPAESPSDTAPLSRPETASTEVTGTIPVAPTSVPLERVAIPRSESLPDSIGGPMLRTAALHGDAAAAFEVGVRYAEGK FT GVAVNYDEAAKWYDRAAQAGVVPAMFRLGTLHEKGLGASKDVDAARRYYMQAAERGNAKAMHNLAVLDADGGGKGANYTS FT AAQWFRKAAERGVADSQFNLGILYARGIGIEQNLAESYKWFSLAAAQGDADSARKRDEVAKRLDPQSLAAARLAVQTFTP FT KPQPDDAVKVVSPAGGWDGAAAMPQAKTKTARSATAKSAMAKQAVR* " FT gene complement(275056..278316) FT /locus_tag="Nham_0248" FT /colour=11 FT CDS 278750..279238 FT /locus_tag="Nham_0249" FT /product="transcriptional regulator, MarR family" FT /note="PFAM: regulatory protein, MarR: (5e-06)" FT /note="SPTR top hit: 'Q3PWT4 Regulatory protein, MarR. FT Nitrobacter hamburgensis X14., evalue=5e-87, 100% identity FT hit'" FT /note="KEGG top hit: 'rpa:RPA0821 category=Unassigned, FT evalue=2e-67, 78.527607% identity hit'" FT /note="COGs: 'evalue=6e-06 score=43.8 category=K FT group=COG1846 Transcriptional regulators' " FT /note="InterPro IPR000835" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MRRKPSIEAAAAWIRLMRVQSRVLDTVEHELKKAGFPPLACYDALFELSRAPAGELRPVELEKQMLRPQYATSRLIDRLV FT DEGLAVRRECKVDKRGQFVAITDAGRALQKRMWQAYSAAIEKHVGSKLSDADATKLCGLLDRLGCSCNEAQALAVRDGAS FT AR* " FT gene 278750..279238 FT /locus_tag="Nham_0249" FT /colour=11 FT CDS 279339..280709 FT /locus_tag="Nham_0250" FT /product="glutamate--cysteine ligase" FT /note="TIGRFAM: glutamate--cysteine ligase: (9.4e-262)" FT /note="PFAM: glutamate--cysteine ligase, GCS2: (2.7e-150)" FT /note="SPTR top hit: 'Q3PWT3 Glutamate--cysteine ligase, FT plant. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0182 category=Unassigned, FT evalue=0.0, 93.421053% identity hit'" FT /note="COGs: 'evalue=1.0e-170 score=590 category=H FT group=COG3572 Gamma-glutamylcysteine synthetase' " FT /note="InterPro IPR006336:IPR011556" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MARDQIDMTPLQSRNELVAWLEAGVKPASEFRIGTEHEKTPFTLQGHDPVPYEGSRGIGALLEGMKLLLGWEPIMEQGNI FT IGLHDVTGGGAISLEPGGQFELSGAPVETVHQTQAELAAHLAQVKEIATPLGIGFLGLGMTPSWSRAQIPMMPKGRYRIM FT SGYMPKVGQYGLDMMLRTCTVQTNLDFSSEADMVKKLRVSVALQPVATALFANSPFTEGKPNGFLSFRSEIWRDTDNARA FT GMIPWAFEDGMGFERWVDYALDVPMYFVKRDENYIDVSGSSFRDFFDGRNKAIPGERPTLSDWANHLSTIFPEVRLKRYL FT EMRGADGVPWGRLPALPAFWVGLLYDTTSLEAAWDIAKRWNAQERQALRDDVSRMGFKARIKGRYLFEIARECLVLAHAG FT LRRRGHVDHLGRDESRHLEPLDQILDSGRSPAEEMLEKFNGAWGGSVEPAYSEYAF* FT " FT gene 279339..280709 FT /locus_tag="Nham_0250" FT /colour=12 FT CDS 280821..281438 FT /locus_tag="Nham_0251" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWT2 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=1e-119, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0005 category=Unassigned, FT evalue=1e-99, 84.466019% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSPLRALPSGYAVLRHVLKVHALKVGLILLAALSSIAGPVAPPAHAQTNFDRPGADYLRMPLRSGDPADCALACERDRRC FT RAWSFSYPSERSETAVCWLKNAVAPRIANPCCVSGVRGAGVIERRIGPVETSTDRSGGDYRGFEIKKDERADADQICRHA FT CDADSKCRAWTYARPGYAGKAARCFLKKEIKPPRRRPGFTSGVVR* " FT sig_peptide 280821..280961 FT /colour=11 FT /locus_tag="Nham_0251" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.997) with cleavage site probability 0.997 at FT residue 47" FT gene 280821..281438 FT /locus_tag="Nham_0251" FT /colour=13 FT CDS complement(281663..282430) FT /locus_tag="Nham_0252" FT /product="Peptidase S26A, signal peptidase I" FT /EC_number="3.4.21.89" FT /note="TIGRFAM: Peptidase S26A, signal peptidase I: FT (7.5e-49)" FT /note="PRIAM: Signal peptidase I" FT /note="PFAM: peptidase S24, S26A and S26B: (5.8e-25)" FT /note="SPTR top hit: 'Q3PWT1 Signal peptidase I (EC FT 3.4.21.89). Nitrobacter hamburgensis X14., evalue=1e-146, FT 100% identity hit'" FT /note="KEGG top hit: 'rpa:RPA0824 lepB1 EC=3.4.21.89 FT category=Unassigned, evalue=1e-114, 76.562500% identity FT hit'" FT /note="COGs: 'evalue=6e-13 score=68.1 category=U FT group=COG0681 Signal peptidase I' " FT /note="InterPro IPR000223:IPR006198" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MSAETSTPSTVRRWGGQIVQIAAIVLVVLVAKGALAEPFYVPSASMEPTLLIGDALLASKYPYGYSTASLPIHVSFPETS FT RVFGELPKRGDVVVFRWPGDRSQVWVKRVIGLPGDRIQMRGGQVWINGQATALKPDGLGEAEDDNGSSEPARRYVETLPG FT GISHPIFKIHDNGRLDDTVEVTVPPGHLFVMGDNRDNSADSRVPVSQGGVGLLPTDNLVGRVDAIVGSWDMGIRSQPVWT FT WLSGFRLARFFTAVH* " FT gene complement(281663..282430) FT /locus_tag="Nham_0252" FT /colour=9 FT misc_feature complement(282302..282367) FT /colour=11 FT /locus_tag="Nham_0252" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(282427..283854) FT /locus_tag="Nham_0253" FT /product="peptidase U62, modulator of DNA gyrase" FT /note="PFAM: peptidase U62, modulator of DNA gyrase: FT (1.1e-62)" FT /note="SPTR top hit: 'Q3PWT0 Peptidase U62, modulator of FT DNA gyrase. Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0221 category=Unassigned, FT evalue=0.0, 93.263158% identity hit'" FT /note="COGs: 'evalue=1.0e-112 score=399 category=R FT group=COG0312 Zn-dependent proteases and their inactivated FT homologs' " FT /note="InterPro IPR002510" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTSPAATSLLDRADLDRDSVRDEVARGLKGADDGELFLEYSQSEALMFDNGRLKQATYDTSQGFGLRAVKGDAVGYAHSS FT DVSLPALIRAADAVGAVRGGYQGTFAAAPAHTNVRLYVDDNPLDGLGFETKVKLLTEIDAYVRDKDPRVRQVSVSLGATW FT QVVEIMRPDGESYRDIRPLVRVNISVVAGQGDRQETGSHGYGGREGYARFIETKAWRSAADGAIRQALVNLESVPAPAGE FT MDVVLGPGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGQQVAARGVTVVDDGTISARRGSLSIDDEGTPTGRTVLIEDG FT VLIGYMQDRQNARLMGMKPTGNGRRQDYAHVPMPRMTNTYMPAGDRDPAEILASVKNGIYAANFGGGQVDITSGKYVFQC FT TEAYKIENGKIGAPLKGAMLIGNGPTDLHRITMIGNDIALDDGIGTCGKNGQGVPVGVGQPTLRMERITVGGTGG* FT " FT gene complement(282427..283854) FT /locus_tag="Nham_0253" FT /colour=11 FT CDS complement(284077..284637) FT /locus_tag="Nham_0254" FT /product="Invasion associated locus B" FT /note="PFAM: Invasion associated locus B: (1.3e-59)" FT /note="SPTR top hit: 'Q3PWS9 Invasion associated locus B FT precursor. Nitrobacter hamburgensis X14., evalue=1e-102, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0222 category=Unassigned, FT evalue=2e-86, 87.634409% identity hit'" FT /note="COGs: 'evalue=6e-38 score=150 category=R FT group=COG5342 Invasion protein B involved in pathogenesis' FT " FT /note="InterPro IPR010642" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MRPSKRHIRHAPGRIAVAKRQPTRVLTGWIAALIVLGFAGAACAQGAVKSVHGDWQIRCDTPPGAKAEQCALIQSVVAED FT RSNAGLTVIVLKTADQKSRLMRVVAPLGVLLPSGLGLKLDNVDVGRAGFVRCLPNGCVAEVVLDDKLLGQLRSAKTATFI FT IFETPEEGIGFPLSLNGLGEGYDKLP* " FT gene complement(284077..284637) FT /locus_tag="Nham_0254" FT /colour=11 FT misc_feature complement(284494..284559) FT /colour=11 FT /locus_tag="Nham_0254" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(284503..284637) FT /colour=11 FT /locus_tag="Nham_0254" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.999) with cleavage site probability 0.951 at FT residue 45" FT CDS 285079..285936 FT /locus_tag="Nham_0255" FT /product="Cytochrome-c oxidase" FT /EC_number="1.9.3.1" FT /note="PRIAM: Cytochrome-c oxidase" FT /note="PFAM: cytochrome c oxidase, subunit II: (2.9e-62) FT cytochrome C oxidase subunit II, transmembrane region: FT (2.9e-26)" FT /note="SPTR top hit: 'Q3PQT7 Cytochrome-c oxidase FT precursor (EC 1.9.3.1). Nitrobacter hamburgensis X14., FT evalue=1e-160, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0761 EC=1.9.3.1 FT category=Unassigned, evalue=1e-140, 85.915493% identity FT hit'" FT /note="COGs: 'evalue=6e-55 score=207 category=C FT group=COG1622 Heme/copper-type cytochrome/quinol oxidases FT subunit 2' " FT /note="InterPro IPR001505:IPR002429:IPR011759" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MKMSKGQIGRRFSRRFLGVAFGMAALAAGGSVSAEELVGQPNAWGLDLQAAASPVMESIAKMHSGLVVVITLITLLVTAL FT LVVAMLKFNARANPVPSKTTHNTMIEVAWTIIPVLILVGIAVPSFRLLFEQLDIPKADLTVKATGKQWYWSYTYPDNGKF FT EFDSLMAEDKKPRMLAVDNEMVVPVNKVVVVQVTGADVIHSFGVPAFGIKVDAIPGRLNETWFKATKTGMFYGQCSELCG FT RDHAFMPIAVRVVSEQDFAAWVETAKKKFASNPANAVASAADVMH* " FT sig_peptide 285079..285183 FT /colour=11 FT /locus_tag="Nham_0255" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.967 at FT residue 35" FT gene 285079..285936 FT /locus_tag="Nham_0255" FT /colour=3 FT misc_feature order(285112..285180,285268..285336,285397..285465) FT /colour=11 FT /locus_tag="Nham_0255" FT /note="3 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 286019..287632 FT /locus_tag="Nham_0256" FT /product="Cytochrome-c oxidase" FT /EC_number="1.9.3.1" FT /note="PRIAM: Cytochrome-c oxidase" FT /note="PFAM: cytochrome c oxidase, subunit I: (8.3e-305)" FT /note="SPTR top hit: 'Q3PQT8 Cytochrome-c oxidase (EC FT 1.9.3.1). Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0762 EC=1.9.3.1 FT category=Unassigned, evalue=0.0, 93.506494% identity hit'" FT /note="COGs: 'evalue=1.0e-168 score=584 category=C FT group=COG0843 Heme/copper-type cytochrome/quinol oxidases FT subunit 1' " FT /note="InterPro IPR000883" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MATATAHDHAHDDDHAHHPTGWRRFAYSTNHKDIGTMYLVFALVAGLIGGLMSMGIRAELMFPGVQVFHPAHEYNVFVTN FT HGLIMIFFMVMPAMIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPAALALLLISTFVEGEPGSSGAGTGWTLYPPLSTS FT GHPGPAVDFGILSIHLAGASSILGAINFITTIFNMRAPGMTMHKMPLFVWSILVTVFLLLLALPVLAGAITMLLTDRNFG FT TTFFAPDGGGDPVLFQHLFWFFGHPEVYILILPGFGMISHVISTFSKKPIFGYLGMAYAMVAIGGVGFVVWAHHMYTVGM FT VSSAQAYFVAATMVIAVPTGVKVFSWIATMWGGSIEFRAPMLFAIGFIFLFTVGGVTGVVLANAGVDRVMQETYYVIAHF FT HYVMGIAAVFAIFAGWYYWFPKMSGYMYNETIAKLHFWLMFIGANVLFFPQHFLGLQGMMRRSVDYPDAFAGWNEISSYG FT AFIAGSGVLVFLYGLIDAFARKQKAADNPWGEGATTLEWTLSSPPPFHQFGTLPKVQ* FT " FT gene 286019..287632 FT /locus_tag="Nham_0256" FT /colour=3 FT misc_feature order(286118..286186,286268..286336,286373..286432,286529..286597,286634..286702,286796..286864,286883..286951,286994..287062,287096..287164,287207..287275,287312..287380,287438..287506) FT /colour=11 FT /locus_tag="Nham_0256" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 287696..288682 FT /locus_tag="Nham_0257" FT /product="protoheme IX farnesyltransferase" FT /note="TIGRFAM: protoheme IX farnesyltransferase: FT (4.4e-119)" FT /note="PFAM: UbiA prenyltransferase: (1.3e-85)" FT /note="SPTR top hit: 'Q3PQT9 Protoheme IX FT farnesyltransferase. Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0763 category=Unassigned, FT evalue=1e-170, 95.283019% identity hit'" FT /note="COGs: 'evalue=1e-81 score=296 category=O FT group=COG0109 Polyprenyltransferase (cytochrome oxidase FT assembly factor)' " FT /note="InterPro IPR000537:IPR006369" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MRRARRAAYLNKVSCVLPVVDQNAIELPPRISEASVADYFALLKPRVMSLVIFTALVGLMIAPGHVHPVLGFTAILCIAV FT GAGASGALNMALEGDIDVLMSRTANRPIPRGRITRGEAMGFGLTLSFFSVMTLGALVNWYAGGLLAFTIFFYVVIYTMGL FT KRRTAQNIVIGGAAGALPPVVAWAAATGSLSVEPLLLFLIIFFWTPPHFWALALFRSDDYARAGVPMLPVVAGPDATRLQ FT ILLYTIVLVAIAAAPWPLGYFDWVYGVTSLVLGAGMLVLAINVYRHRTGSTALRATRRLFAFSILYLFALFAVLLLDVLA FT KAVAPLIW* " FT gene 287696..288682 FT /locus_tag="Nham_0257" FT /colour=9 FT misc_feature order(287834..287893,287903..287971,288032..288100,288110..288163,288197..288265,288278..288337,288416..288469,288482..288550,288587..288655) FT /colour=11 FT /locus_tag="Nham_0257" FT /note="9 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 288699..288863 FT /locus_tag="Nham_0258" FT /product="CoxF protein " FT /note="SPTR top hit: 'Q3PQU0 CoxF protein. Nitrobacter FT hamburgensis X14., evalue=1e-22, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0764 category=Unassigned, FT evalue=3e-17, 79.245283% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MDNKPKPDEIVLTEAQKKRRRERSIAIACALGILVVLFFAVTLVKGPGVIVRPM*" FT gene 288699..288863 FT /locus_tag="Nham_0258" FT /colour=11 FT misc_feature 288771..288830 FT /colour=11 FT /locus_tag="Nham_0258" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 288869..289519 FT /locus_tag="Nham_0259" FT /product="cytochrome c oxidase assembly protein FT CtaG/Cox11" FT /note="PFAM: cytochrome c oxidase assembly protein FT CtaG/Cox11: (1.4e-84)" FT /note="SPTR top hit: 'Q3PQU1 Cytochrome c oxidase assembly FT protein CtaG/Cox11. Nitrobacter hamburgensis X14., FT evalue=1e-123, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0765 category=Unassigned, FT evalue=1e-97, 79.629630% identity hit'" FT /note="COGs: 'evalue=4e-56 score=211 category=O FT group=COG3175 Cytochrome oxidase assembly factor' " FT /note="InterPro IPR007533" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTDAPQHPQQPATGTPATPKAAPRVGRDVRIGATCGLLVALMVGAAYAAVPFYNWFCRATGFNGTTQVAKVAPSAAPLAR FT TVAVRFDSNISGGLPWKFEPEQTEINVRIGEVATVYYTVTNHAATATTGQAAYNVTPLTVGSYFTKINCFCFTEQTLAPG FT EKREMAVVFYVDPSFAADSENDGVRTITLSYTFFPVKDAAPKPVAASEPDRPGGSI* FT " FT gene 288869..289519 FT /locus_tag="Nham_0259" FT /colour=9 FT misc_feature 288959..289027 FT /colour=11 FT /locus_tag="Nham_0259" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 289622..290476 FT /locus_tag="Nham_0260" FT /product="cytochrome c oxidase, subunit III" FT /note="PFAM: cytochrome c oxidase, subunit III: FT (6.7e-143)" FT /note="SPTR top hit: 'Q3PQU2 Cytochrome c oxidase, subunit FT III. Nitrobacter hamburgensis X14., evalue=1e-172, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0766 EC=1.9.3.1 FT category=Unassigned, evalue=1e-167, 95.422535% identity FT hit'" FT /note="COGs: 'evalue=6e-43 score=168 category=C FT group=COG1845 Heme/copper-type cytochrome/quinol oxidase FT subunit 3' " FT /note="InterPro IPR000298" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MATAQVKHDYHLVDPSPWPIVGATAAFVMAVGAILWMHHLTAVAPIIFGIGVVGVLYTMASWWADVIREAEHKGDHTRVV FT QISHRYGMILFITSEVMFFVAWFWAFFNSALFPGDPVHATREVLFGGVWPPKGIETFDPWHLPLLNTLLLLTSGTTVTWA FT HHALLNGDRKGLKWGLILTIALGATFTCVQAYEYSEAAFSFAGNVYGATFFMATGFHGFHVLVGTIFLIVCLFRANAGHF FT TPTQHLGFEFAAWYWHFVDVVWLFLFVCIYVWGNGASAMAHAAH* " FT gene 289622..290476 FT /locus_tag="Nham_0260" FT /colour=3 FT misc_feature order(289679..289732,289745..289813,289874..289942,290048..290116,290135..290203,290246..290314,290372..290440) FT /colour=11 FT /locus_tag="Nham_0260" FT /note="7 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 290551..290940 FT /locus_tag="Nham_0261" FT /product="protein of unknown function DUF983" FT /note="PFAM: protein of unknown function DUF983: FT (2.6e-50)" FT /note="SPTR top hit: 'Q3PWS2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=6e-71, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0767 category=Unassigned, FT evalue=8e-56, 80.800000% identity hit'" FT /note="COGs: 'evalue=2e-34 score=137 category=S FT group=COG5349 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR009325" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSNFYARATLFEAILRGVACKCPRCGKGKLFSGFLTLRPSCQRCELDYAFIDSGDGPAVFIILIGGFIVVGCALIVEVKY FT QPPYWVHAALWIPLILAVTLAPLRAMKSLLISLQFHHKAAEGRSIRPNP* " FT gene 290551..290940 FT /locus_tag="Nham_0261" FT /colour=13 FT misc_feature order(290716..290784,290797..290865) FT /colour=11 FT /locus_tag="Nham_0261" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 291372..292790 FT /locus_tag="Nham_0262" FT /product="threonine synthase" FT /EC_number="4.2.3.1" FT /note="TIGRFAM: threonine synthase: (3.2e-79)" FT /note="PRIAM: Threonine synthase" FT /note="PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta FT subunit: (1.2e-18)" FT /note="SPTR top hit: 'Q3PWS1 Threonine synthase (EC FT 4.2.3.1). Nitrobacter hamburgensis X14., evalue=0.0, 99% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0229 EC=4.2.3.1 FT category=Unassigned, evalue=0.0, 88.135593% identity hit'" FT /note="COGs: 'evalue=1e-89 score=324 category=E FT group=COG0498 Threonine synthase' " FT /note="InterPro IPR000634:IPR001926:IPR004450" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="LTHYISTRGETQKLRFCDVMLAGLARDGGLYVPEVWPQLTPDTIAGFFGRPYWEVAVEVIRPFVAGDISDADLGRMANEA FT YATFRHPAVVPLDQIGPNQFMLELFHGPTLAFKDVAMQLLSRLMDHVLAQRGRRTTIVVATSGDTGGAAVDAFANRANVD FT LIVLFPDGRISEVQRRMMTTTGASNVHALAVKGTFDDCQAIVKGLFNNHRFRDEVSLSGVNSINWARIVAQVVYYFTSAV FT ALGAPARTVDFTVPTGNFGDIFAGYVAKKMGLPVRCLRIAANVNDILVRTLKTGIYEVREVRATASPSMDIQVSSNFERL FT LFEATGRDAAQVRALMASLAQSGRFVLPDPVLAEIRRDFDVGRSDETETAAAIRAAWREAGDLVDPHTAVALAIADRDTS FT DSKIPNIVLATAHAAKFPDAVEAACGARPQLPAWLDGLMTRPERITVVNNDQVEIERFVLSVSRAAKHGVAG* FT " FT gene 291372..292790 FT /locus_tag="Nham_0262" FT /colour=10 FT CDS 292787..294076 FT /locus_tag="Nham_0263" FT /product="peptidase M16-like" FT /note="PFAM: peptidase M16-like: (2.2e-54)" FT /note="SPTR top hit: 'Q3PWS0 Insulinase-like:Peptidase FT M16, C-terminal. Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0230 EC=3.4.24.64 FT category=Unassigned, evalue=0.0, 88.111888% identity hit'" FT /note="COGs: 'evalue=4e-92 score=332 category=R FT group=COG0612 Zn-dependent peptidases' " FT /note="InterPro IPR001431:IPR007863:IPR011765" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MSVDVTKLPSGLTVVTDTMPHLETAALGVWTGVGGRDEKPNEHGISHLLEHMAFKGTTTRSAREIAEEIEAVGGDLNAAT FT GVETTAYYARVMKADVPLALDVLSDILSNPNFAADELEREKSVIEQEIGAAQDTPDDVVFEHLNELCYPDQPMGRSLLGT FT PETLKRFNGDSLHGYLATHYRGPNMVVAAAGAVEHKAVVAEVERRFASFDAAPAPKPQAAKFGKGGSKVVHRDLEQAHLT FT LALEGLPQTDRSLFSLQVFTHLIGGGMSSRLFQEVREKRGLCYSIYAFHAPYADTGFFGLYTGTDPSDAPEMMEVVVDVI FT NEAVETLTDTEIARAKAQMKAGLLMALESCSARAEQLARHILVYGRPQSVAELMARIDAVSIESTRDVARDILTRSRPAV FT VALGSGRGLDTAVAFAEGLTPSKAKILLH* " FT gene 292787..294076 FT /locus_tag="Nham_0263" FT /colour=11 FT CDS 294254..294838 FT /locus_tag="Nham_0264" FT /product="GCN5-related N-acetyltransferase" FT /note="PFAM: GCN5-related N-acetyltransferase: (4.2e-11)" FT /note="SPTR top hit: 'Q3PWR9 GCN5-related FT N-acetyltransferase. Nitrobacter hamburgensis X14., FT evalue=1e-111, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0231 category=Unassigned, FT evalue=6e-98, 89.528796% identity hit'" FT /note="COGs: 'evalue=4e-27 score=114 category=J FT group=COG1670 Acetyltransferases including N-acetylases of FT ribosomal proteins' " FT /note="InterPro IPR000182" FT /codon_start=1 FT /transl_table=11 FT /colour=7 FT /translation="MALFRLPSSAPALMPRGRGLLLRAPEVSDFLQWTRLREYSRAYLTPWEPIWPSDDLTRAGFRRRLRRYAEDIAGDKSYPF FT IVFRESDGVMLGGVTLANVRRGIVQAGTIGYWIGEPYAGQGYMTAALRVLLPTLFGELNLHRIEAACIPSNAPSIRVLEK FT CGFTREGLARRYLCINGIWQDHLLFGMLHEDFHG* " FT gene 294254..294838 FT /locus_tag="Nham_0264" FT /colour=7 FT CDS 294997..295683 FT /locus_tag="Nham_0265" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWR8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-126, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0234 category=Unassigned, FT evalue=2e-86, 68.776371% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MVPVADSTDAPEPAVAGPLRRFPFGLVTMVAVFGIVAASPTQAQSLGDRFKDMFGIKSQPERAAPASGETASAPSDLSCP FT PVTIRAGASTYAVGLPGKPASGTDLRYQAIIGETARECDYNTDTHQIAIKVGIQGRVIVGPAGAPPTVEVPLRVAVVEDG FT VSAKTIATKAYTITVNVPGVEGGTYSFVSDDIAYPAPQGAVADRYVFYIGFDPQALKPEPRARSKRQR* FT " FT gene 294997..295683 FT /locus_tag="Nham_0265" FT /colour=13 FT CDS complement(295916..296401) FT /locus_tag="Nham_0266" FT /product="H+-transporting two-sector ATPase, B/B' subunit" FT /note="PFAM: H+-transporting two-sector ATPase, B/B' FT subunit: (3.3e-21)" FT /note="SPTR top hit: 'Q3PWR7 H+-transporting two-sector FT ATPase, B/B' subunit. Nitrobacter hamburgensis X14., FT evalue=2e-80, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0235 category=Unassigned, FT evalue=3e-72, 88.819876% identity hit'" FT /note="COGs: 'evalue=1e-12 score=66.0 category=C FT group=COG0711 F0F1-type ATP synthase subunit b' " FT /note="InterPro IPR001547:IPR002146" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MFAEPETWVAIAFVILMGVFAYVGVHRTVLTTLDRRSARIKGELDDARRLKDEAAKLLADYRARHASAEREAQDIIASAK FT AEAERIAAEAKVKMEDFVARRTKSAEGKIASAEAQAIADVRAAAADAAVAAAAAILSQSVKGQVADDLLANGVNEVRAKL FT N* " FT gene complement(295916..296401) FT /locus_tag="Nham_0266" FT /colour=3 FT misc_feature complement(296315..296380) FT /colour=11 FT /locus_tag="Nham_0266" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(296409..296966) FT /locus_tag="Nham_0267" FT /product="H+-transporting two-sector ATPase, B/B' subunit" FT /note="PFAM: H+-transporting two-sector ATPase, B/B' FT subunit: (2.1e-12)" FT /note="SPTR top hit: 'Q3PWR6 H+-transporting two-sector FT ATPase, B/B' subunit. Nitrobacter hamburgensis X14., FT evalue=2e-95, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0236 category=Unassigned, FT evalue=3e-83, 87.027027% identity hit'" FT /note="COGs: 'evalue=2e-14 score=72.6 category=C FT group=COG0711 F0F1-type ATP synthase subunit b' " FT /note="InterPro IPR002146" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="VADSHGNAKGATAHTEAGGGHKAPFPPFQKDTFASQLVSLTIAFVALYLISSRLALPRVRKTIDDRQNKIEGDIAQAQTL FT KNESDAALKAYEVELAAARTRAQAIGNETREKLNAEADTERKALEKRLSAKLADAEKTIASTRTAAMSNVRGIASDAATA FT IVQQLTGAMPDRKLVDSAVEASMKG* " FT gene complement(296409..296966) FT /locus_tag="Nham_0267" FT /colour=3 FT misc_feature complement(296799..296864) FT /colour=11 FT /locus_tag="Nham_0267" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS complement(297030..297257) FT /locus_tag="Nham_0268" FT /product="H+-transporting two-sector ATPase, C subunit" FT /note="PFAM: H+-transporting two-sector ATPase, C subunit: FT (3.5e-19)" FT /note="SPTR top hit: 'Q3PWR5 H+-transporting two-sector FT ATPase, C subunit. Nitrobacter hamburgensis X14., FT evalue=9e-35, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0237 category=Unassigned, FT evalue=7e-35, 98.666667% identity hit'" FT /note="InterPro IPR000454:IPR002379" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MDPLAAKYIGAGIACIGMGGAGAGVGIIFGNYLAAAVRNPSAAQGQFGNLIFGFAVTEALGIFSLLIALLLLFAL*" FT gene complement(297030..297257) FT /locus_tag="Nham_0268" FT /colour=11 FT misc_feature complement(order(297042..297107,297153..297218)) FT /colour=11 FT /locus_tag="Nham_0268" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(297316..298059) FT /locus_tag="Nham_0269" FT /product="ATP synthase F0, A subunit" FT /note="TIGRFAM: ATP synthase F0, A subunit: (8.1e-73)" FT /note="PFAM: H+-transporting two-sector ATPase, A subunit: FT (3.7e-55)" FT /note="SPTR top hit: 'Q3PWR4 H+-transporting two-sector FT ATPase, A subunit. Nitrobacter hamburgensis X14., FT evalue=1e-133, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0238 category=Unassigned, FT evalue=1e-128, 95.141700% identity hit'" FT /note="COGs: 'evalue=2e-34 score=139 category=C FT group=COG0356 F0F1-type ATP synthase subunit a' " FT /note="InterPro IPR000568" FT /codon_start=1 FT /transl_table=11 FT /colour=3 FT /translation="MMDPIHQFNIETIFTIGHIGGQEIAFTNSSAYMLVAVVLTSLLMLATGRKLVPGRMQSIAEISYEFVADTIHTTAGKDGM FT KFFPFVFTIFMLVTVSNLVGIVPYTFTISSHIIVTAALAFLVFFTVLIYGFYKNGLRFFKLFVPSGIPIVILPLVVAIEV FT ISFLSRPVSHSVRLFANMLAGHITLKVFASFVTMLGAMGIVGVFGAVLPLALVVALTALELLVAFLQAYVFTILTCIYIN FT DAIHPGH* " FT gene complement(297316..298059) FT /locus_tag="Nham_0269" FT /colour=3 FT misc_feature complement(order(297331..297396,297418..297483,297568..297633,297670..297735,297748..297813,297922..297987)) FT /colour=11 FT /locus_tag="Nham_0269" FT /note="6 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(298127..298510) FT /locus_tag="Nham_0270" FT /product="FoF1 ATP synthase, subunit I " FT /note="SPTR top hit: 'Q3PWR3 FoF1 ATP synthase, subunit I. FT Nitrobacter hamburgensis X14., evalue=1e-66, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0239 category=Unassigned, FT evalue=2e-58, 87.401575% identity hit'" FT /note="COGs: 'evalue=1e-18 score=85.0 category=S FT group=COG5336 Uncharacterized protein conserved in FT bacteria' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MADGTDKNSSGHGDREHSAPDEAALSERLGNLDQRLSKLQGARKNETDQFGDGSGNGAARASAMARGFRLSSELIAGVVV FT GAVIGWGFDRLLSTSPWGLIVFFLLGFAAGVINVMRSAGVVPEQTDR* " FT gene complement(298127..298510) FT /locus_tag="Nham_0270" FT /colour=13 FT misc_feature complement(order(298151..298216,298247..298300)) FT /colour=11 FT /locus_tag="Nham_0270" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 299075..299629 FT /locus_tag="Nham_0271" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWR2 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=1e-100, FT 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0240 category=Unassigned, FT evalue=1e-61, 67.403315% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSAATSPLRLSRIPATAALAACLAAPALAQATPDVENGRYTLTPMSGGFVRLDTRTGVVSHCGDKGNGWACYALPEERAA FT LDKEIGRLLAENEKLKAQLAAREPTASGKTQQALPKADSLRPGAPKAGVPKADQPKSADANRNSIEIPLPSDRDMDRVMS FT FVERAWRRLIEMAGRVHRDASGGI* " FT sig_peptide 299075..299164 FT /colour=11 FT /locus_tag="Nham_0271" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.921 at FT residue 30" FT gene 299075..299629 FT /locus_tag="Nham_0271" FT /colour=13 FT CDS 299819..300235 FT /locus_tag="Nham_0272" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWR1 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=4e-83, FT 100% identity hit'" FT /note="KEGG top hit: 'rpa:RPA4571 category=Unassigned, FT evalue=1e-31, 56.716418% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRFSKILLAALAVGTTSILFQPAMAAPLTVDRSLATPAATPQPVRYRHHGWHRHHHHHGWHHHGWRRGHYGYGPGYYGYG FT PGPVFGGLAAGAMIGSAIAGSQARAPRSDDAYCFRRFKSYDPRSGTYLGYDGNRHPCP* FT " FT sig_peptide 299819..299896 FT /colour=11 FT /locus_tag="Nham_0272" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 1.000 at FT residue 26" FT gene 299819..300235 FT /locus_tag="Nham_0272" FT /colour=13 FT misc_feature order(299837..299905,300047..300115) FT /colour=11 FT /locus_tag="Nham_0272" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 300484..301179 FT /locus_tag="Nham_0273" FT /product="two component transcriptional regulator, LuxR FT family" FT /note="PFAM: regulatory protein, LuxR: (2.5e-20) response FT regulator receiver: (5.4e-31)" FT /note="SPTR top hit: 'Q3PWR0 Regulatory protein, FT LuxR:Response regulator receiver. Nitrobacter hamburgensis FT X14., evalue=1e-122, 100% identity hit'" FT /note="KEGG top hit: 'bja:blr1194 tcsR FT category=Unassigned, evalue=1e-96, 85.514019% identity FT hit'" FT /note="COGs: 'evalue=6e-44 score=170 category=K FT group=COG2197 Response regulator containing a CheY-like FT receiver domain and an HTH DNA-binding domain' " FT /note="InterPro IPR000792:IPR001789" FT /codon_start=1 FT /transl_table=11 FT /colour=6 FT /translation="MREPVDSMTASDSTRIVIADDHPLFRDALRQAVASIMPAQIDEAGTFEELTARLEQEADVDLILLDLSMPGISGFSGLIY FT LRAQYSAIPVVVVSASDDVATIRRSMDFGASGFIPKRLGVDALRTAILKVIEGDIWIPPDVDLSAAADPEMTRLRDRLVT FT LTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVDSRTQAVIAAARIAGDQWRQSEPSAG* FT " FT gene 300484..301179 FT /locus_tag="Nham_0273" FT /colour=6 FT CDS complement(301267..304776) FT /locus_tag="Nham_0274" FT /product="periplasmic sensor hybrid histidine kinase" FT /note="PFAM: response regulator receiver: (1.9e-07) FT ATP-binding region, ATPase-like: (9.1e-31) histidine FT kinase A-like: (6.3e-14)" FT /note="SPTR top hit: 'Q3PWQ9 Response regulator FT receiver:ATP-binding region, ATPase-like:Histidine kinase FT A, N-terminal. Nitrobacter hamburgensis X14., evalue=0.0, FT 100% identity hit'" FT /note="KEGG top hit: 'bja:bll1199 category=Unassigned, FT evalue=0.0, 76.791809% identity hit'" FT /note="COGs: 'evalue=2e-56 score=215 category=R FT group=COG0591 Na+/proline symporter' " FT /note="InterPro FT IPR001734:IPR001789:IPR003594:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MLHDWGVIAAAIGYIGFLFLVASYGDRAPKFGRGPAGPLIYPLSLAVYCTSWTFFGSVGLATRTGPEFLAIYVGPVLLIA FT FCTPLLRRIIQLAKSQNITSVADFIAARYGKSQAVAATVAVIAMIGSIPYISLQLKAVASSLGTILIDDQAIAKIPVIND FT IALIVTIALALFAVLFGTRQTDATEHQHGLMLAIATESIVKLVAFIAAGVFVTFWMFSPVELVERALKSPEAMRAIEYTP FT SIGNFLTMTLLSFLAIMLLPRQFHVSVVENSSDAEVGRARWLFPLYLVAINIFVVPIALAGLVTFPFGNSDMYVLALPIE FT GQSRLLSIAVFIGGLSAGTAMVIVECVALAIMVSNDIVVPLVLQRSPAARGGRKDFGNFLLKTRRLAIFAIMIMAYLYYR FT ALGSAQLAAIGLLSFAAIAQLAPVFLGGLVWRRATARGAMGGMLAGFAVWAYTLFLPSLLDGTTVGTMLLQHGPFGIGEL FT KPQALFGVNLPPLMHGVLWSLSLNVLTYVALSLTRQPSSIERVQAGIFAPHALAPLTPPFRRWRSMVTVQDILGTVAQYL FT GPERARQSFKAFAAARRLNLDPAAPADFELLQHAEHLIASSIGAASSRLVISLLLRRRTVSAKAALKLLDDAHAALHFNR FT EMLQTALNHVRQGIAVFNTDLQLICSNRQFGNILGLPPQIVQIGIPLTEILEFLGTIDKSQIDREAAKQTRLTAYTTEGQ FT PYLERRPDRNIVIEVRANRMPDGGLVITFSDVTPSFEAAEALERANATLEKRVRDRTEELTRLNSELARAKSIAEEANIS FT KTRFLAAAGHDILQPLNAARLYVTSLVERRSGGEDSRLVQNIDDSLEAIEEILGALLDISRLDAGAITTSITSFRVGDLM FT RSLEIEFAPMARARQVRLTFVPSSLPIASDRMLLRRLLQNLISNAIKYTPHGRVLIGCRRRGESLRINVYDTGVGIPILK FT RGEIFKEFHRLEQGARIARGLGLGLSIVQRLARVLDLTIALDSNRGGGSLFSVTIPIAPAINQTAHATAVTSSTPLSHAP FT MSGTLIVCIENDLAILDGMKTLLTSWDARVIAVTDHESAIAAIEAAGGPITGLLVDYHLDRGNGIATIREIRRKFGETIP FT AILITADRSPHVREAAQLERVSVLNKPLKPASLRALIGQWRSQQIAAAE* " FT gene complement(301267..304776) FT /locus_tag="Nham_0274" FT /colour=11 FT misc_feature complement(order(303397..303462,303484..303549,303568..303618,303736..303801,303862..303927,304006..304071,304117..304182,304246..304311,304372..304437,304507..304572,304603..304668,304705..304761)) FT /colour=11 FT /locus_tag="Nham_0274" FT /note="12 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS join(304967..305404,305404..305565) FT /locus_tag="Nham_0275" FT /product="response regulator receiver" FT /note="PFAM: response regulator receiver: (1.1e-31)" FT /note="SPTR top hit: 'Q3PWQ8 Response regulator receiver. FT Nitrobacter hamburgensis X14., evalue=6e-76, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0241 category=Unassigned, FT evalue=1e-55, 81.481481% identity hit'" FT /note="COGs: 'evalue=5e-29 score=120 category=T FT group=COG4566 Response regulator' " FT /note="InterPro IPR001789" FT /codon_start=1 FT /transl_table=11 FT /evidence=not_experimental FT /colour=15 FT /pseudo FT /translation="MGQLLSFVPDTPVFIVNDDPSVRETLVLLLKIEGYAAQSFGDGASF FT LEAVRSVLPACVILDLHLPGESGFDILRKLAAEWVAAPILVISGVADIATAVAAMKYGAL FT DFLEKPFSSDAIVDRVRAAVKVWREAARSTGSPISPAAICLTCRERESPVPSGRGASNKE FT AGRRLGISPRTVEVHRARIMDKLGAKNAADLIRI" FT gene 304967..305565 FT /locus_tag="Nham_0275" FT /colour=15 FT /pseudo FT CDS complement(305768..306997) FT /locus_tag="Nham_0276" FT /product="5-aminolevulinic acid synthase" FT /EC_number="2.3.1.37" FT /note="TIGRFAM: 5-aminolevulinic acid synthase: (0)" FT /note="PRIAM: 5-aminolevulinic acid synthase" FT /note="PFAM: Cys/Met metabolism FT pyridoxal-phosphate-dependent enzymes: (0.0045) aromatic FT amino acid beta-eliminating lyase/threonine aldolase: FT (0.0031) aminotransferase, class I and II: (5.5e-90) FT aminotransferase class-III: (0.16)" FT /note="SPTR top hit: 'Q3PWQ7 5-aminolevulinic acid FT synthase (EC 2.3.1.37). Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0242 EC=2.3.1.37 FT category=Unassigned, evalue=0.0, 95.110024% identity hit'" FT /note="COGs: 'evalue=1.0e-125 score=440 category=H FT group=COG0156 7-keto-8-aminopelargonate synthetase and FT related enzymes' " FT /note="InterPro FT IPR000277:IPR001597:IPR001917:IPR004839:IPR005814:IPR010961" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MDYSKFFSNALDRLHDERRYRVFADLERIAGRFPYATWHSPKGPRNVVIWCSNDYLGIGQHPKVVGAMVETATRVGTGAG FT GTRNIAGNHHPLVQLEQELADLHGKPAALVFTSGYVSNQTGISTLAKLIPNCLILSDALNHNSMIEGIRQSGCERIVFRH FT NDVAHLEELLRAADPDRPKLIACESLYSMDGDVAPLAKICDLAERYGAMTYVDEVHAVGMYGPRGGGIAEREGVMHRIDV FT LEGTLAKAFGCLGGYIAGNSDIIDAVRSYAPGFIFTTSLPPAICSAATAAIRHLKSSTWERERHQERAARTKASLIAAGL FT PVMVSSTHIVPLFVGNPERCKQASDMLLHDHGIYIQPINYPTVAKGMERLRITPSPYHDDALVDQLAEALLQVWERLDLP FT LQAKSMAAE* " FT gene complement(305768..306997) FT /locus_tag="Nham_0276" FT /colour=12 FT CDS complement(307289..308311) FT /locus_tag="Nham_0277" FT /product="biotin synthase" FT /EC_number="2.8.1.6" FT /note="TIGRFAM: biotin synthase: (2.4e-143)" FT /note="PRIAM: Biotin synthase" FT /note="PFAM: Radical SAM: (5.6e-25) biotin and thiamin FT synthesis associated: (4.5e-37)" FT /note="SMART: Elongator protein 3/MiaB/NifB: (6.6e-37) " FT /note="SPTR top hit: 'Q3PWQ6 Biotin synthase (EC 2.8.1.6). FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0243 EC=2.8.1.6 FT category=Unassigned, evalue=1e-166, 83.823529% identity FT hit'" FT /note="COGs: 'evalue=1.0e-113 score=402 category=H FT group=COG0502 Biotin synthase and related enzymes' " FT /note="InterPro IPR002684:IPR006638:IPR007197:IPR010722" FT /codon_start=1 FT /transl_table=11 FT /colour=12 FT /translation="MDAASVSFGSGHDLSSQPRHDWTRSEAETLYNLPFADLIFQAQTLHRRHFDPNHVETANLLSIKTGGCPEDCGYCSQSAH FT YDSGVKATKLMDREAVIETARRARDAGASRFCMAAAWRNPKDRDLDRVCDMVSAVKELGLETCATLGMLTPDQARRLHDA FT GLDFYNHNVDTSPEFYGNIITTRTMQDRIDTLAHAREAGLKVCCGGIIGLGEQVGDRLGMLMLLANLPAHPESVPINMWN FT EVKSVPVNDTAERPDPIALVRMIAVARIMMPRSVVRLSAGRQYMTDELQALCFLAGANSIFIGDVLLTTKNPQTARDAAL FT LDRLGIRSRLDDAKAAAPPH* " FT gene complement(307289..308311) FT /locus_tag="Nham_0277" FT /colour=12 FT CDS complement(308769..309506) FT /locus_tag="Nham_0278" FT /product="OmpA-like transmembrane region" FT /note="PFAM: OmpA-like transmembrane region: (9.2e-05)" FT /note="SPTR top hit: 'Q3PWQ5 OmpA-like transmembrane FT region precursor. Nitrobacter hamburgensis X14., FT evalue=1e-148, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0244 category=Unassigned, FT evalue=1e-102, 74.180328% identity hit'" FT /note="COGs: 'evalue=2e-15 score=76.6 category=M FT group=COG3637 Opacity protein and related surface FT antigens' " FT /note="InterPro IPR000498" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTGPTNGCSDIEFLENVMKKILLASVAIVGMAAIVPAQAADLAARPYTKAPVYEAAPIYNWTGFYLGGHVGGAFGGDHNL FT AAPGFTRNGNDGVFMGGGQIGYDYQFSPNWVFGIGANYSFLDTNDHPFVNRGLGSVTGRLGYTWGPALLYAKGGYAWADT FT RNTNGFGGDTFSNNRIGRDGFTVGGGLEYMFTQNWSGLIEYQYYDFGTTRTTFRNQDVRFRNDEHTIKVGLNYRFNWGAP FT VGPRY* " FT gene complement(308769..309506) FT /locus_tag="Nham_0278" FT /colour=9 FT misc_feature complement(309387..309443) FT /colour=11 FT /locus_tag="Nham_0278" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT sig_peptide complement(309387..309506) FT /colour=11 FT /locus_tag="Nham_0278" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.986) with cleavage site probability 0.986 at FT residue 40" FT CDS complement(join(309962..310474,310478..311176)) FT /codon_start=1 FT /locus_tag="Nham_0279" FT /product="transposase " FT /note="SPTR top hit: 'Q3PWQ3 Transposase. Nitrobacter FT hamburgensis X14., evalue=1e-130, 100% identity hit'" FT /note="KEGG top hit: 'mlo:mll6033 category=Unassigned, FT evalue=1e-100, 76.824034% identity hit'" FT /note="COGs: 'evalue=3e-47 score=181 category=L FT group=COG5659 FOG: Transposase' " FT /note="InterPro IPR000585" FT /transl_table=11 FT /evidence=not_experimental FT /colour=2 FT /pseudo FT /translation="MSGATIEATLELWASSLRDVKERIRPLFTQDRIAASAGQFIDGLLS FT AEQRKTGWMRAEAAGDSGPWRQQAILGRGRWEADALRDIVRDYVIEHLADDDAVLVIDET FT GFLKQGKVSCGVARQYTGSAGKITNCQIGVFATYVSRHGHALIDRALYLPKEWTDDPDRL FT EAAYVPASVGFATKPKLATRMIARAIAASVPFKWVAGDTVYGVGDIEQQLRRAGKGYVLG FT VSSAHVFSWGKRPPVAGTAADIARTRRSSDWKRLSAGAGTKGPRLHDWCYLELADLEAGQ FT FNRTHDGLWTRGLLIRRRIADDDLAFFTTWCPTGTSIETLVAVEGHRWAIEDSFETAKNE FT FGLDHNESRSWHGWHRHVSLVMLAFAMMAAIRHRANPPPKKTKRRPPAKAKASPRRH" FT gene complement(309962..311176) FT /locus_tag="Nham_0279" FT /colour=2 FT /pseudo FT CDS complement(311426..311668) FT /locus_tag="Nham_0280" FT /product="hypothetical protein" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="LTRRTHRAAGKSPSPYHSPHNTRSPEPEQPGLVRRQHRRADIAPGLAPQHQHFVIVASTRFQLFNARGDAAGRHGDTIKR*" FT gene complement(311426..311668) FT /locus_tag="Nham_0280" FT /colour=13 FT CDS 311997..312251 FT /locus_tag="Nham_0281" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWQ2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-40, 98% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VHHRKADGSLMADFSNRLEKLELKSARHSRPRLSPERRKLLTDCAVLHGDQQASQVLSECRPTNIPSSNEQRAAAIAAGLRVDS*" FT gene 311997..312251 FT /locus_tag="Nham_0281" FT /colour=13 FT CDS complement(312683..313237) FT /locus_tag="Nham_0282" FT /product="Resolvase-like" FT /note="PFAM: Resolvase-like: (6.7e-05)" FT /note="SPTR top hit: 'Q3PWQ1 Resolvase, N-terminal. FT Nitrobacter hamburgensis X14., evalue=1e-100, 100% FT identity hit'" FT /note="KEGG top hit: 'eba:p2A308 tnp2P11 FT category=Unassigned, evalue=3e-39, 51.176471% identity FT hit'" FT /note="COGs: 'evalue=1e-17 score=83.3 category=L FT group=COG1961 Site-specific recombinases DNA invertase Pin FT homologs' " FT /note="InterPro IPR006119" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MSNADNLPATVLGRKAVVYVRQSTQAQVETNTESRRRQYELVETARAHGFRSIEVIDDDLGRSASGMSERPGFDRLVAWL FT CAGDVGAVLCFDASRLARNGRDWHHLLELRGLVEARVIDLDGVYDPSRPNDRLLLGMKGSISEFELGVLRARMLDAARAK FT ARRGELRISVPLGYLWSREYVNKG* " FT gene complement(312683..313237) FT /locus_tag="Nham_0282" FT /colour=2 FT CDS 313607..313891 FT /locus_tag="Nham_0283" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWQ0 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=2e-43, FT 100% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MYKLTPTRRSRGHAAIATAATPDIRAARAATLAEMDRKRQLALAEDEVAQAREVLEKAKSLSAEQAALDVAMARLTELQTAQTSDNGSKKTKAA*" FT sig_peptide 313607..313696 FT /colour=11 FT /locus_tag="Nham_0283" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.873) with cleavage site probability 0.865 at FT residue 30" FT gene 313607..313891 FT /locus_tag="Nham_0283" FT /colour=13 FT CDS complement(313901..315592) FT /locus_tag="Nham_0284" FT /product="phage integrase" FT /note="PFAM: phage integrase: (0.0048)" FT /note="SPTR top hit: 'Q3PWP9 Phage integrase:Phage FT integrase, N-terminal SAM-like. Nitrobacter hamburgensis FT X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'bme:BMEI1664 category=Unassigned, FT evalue=5e-47, 27.777778% identity hit'" FT /note="InterPro IPR002104" FT /codon_start=1 FT /transl_table=11 FT /colour=0 FT /translation="MVSLKRSMTTRARSALPQFRVRVPATVVDSLRVLLYLSERAGPPFAKVVKIGETVEFSLGTTDSVVPAARQDDALDHLRR FT LFDLTATIPVQLSHRDMVALSGETYRLYIKANEENPGEPMAWRMHKALHRAVVEGRIANPPPATLSADDATAATDLFGSG FT DLTAAVNALPAGQHDGLEDRFGLLADWVLIRSRLNLTTDDRRRFLQLVGTASLDASWQLRRNSEGDYSPDPKAARFPAME FT TVTAGQPRQTITGLFDLWWTEAKALGRSQSTHDGYKNGIDRLVEFLEHDDAKRITADDALRFKDHCLKTVTPKTFRDADL FT PGLKSVFGWGLTNRKIAANTFATVTIKREKKIVVRSPGFTDEEAAAIFRHCLAYQHKPKENAKTAAAKRWGPLIAAYTSC FT RIAEALQLRKADVFEESGYSVMRFTPEAGSIKTGIYRLVPIHSHLIDLGFLIFVDESSDGPLFATGSYKRVFDFVRGVVT FT DPNVQPNHGWRHRLKTVARNLGLDPRVVDAIQGHAARTASDGYGDVSVVAMALVMDKILRYRSSTRKMPGPRKQPRRESV FT SER* " FT gene complement(313901..315592) FT /locus_tag="Nham_0284" FT /colour=0 FT tRNA complement(315665..315739) FT /locus_tag="Nham_R0005" FT /gene="tRNA-Thr3" FT /note="anticodon GGT, Cove Score=85.75" FT /product="tRNA_Thr" FT /colour=8 FT CDS 316402..317691 FT /locus_tag="Nham_0285" FT /product="UDP-N-acetylglucosamine FT 1-carboxyvinyltransferase" FT /note="TIGRFAM: UDP-N-acetylglucosamine FT 1-carboxyvinyltransferase: (2.1e-229)" FT /note="PFAM: EPSP synthase (3-phosphoshikimate FT 1-carboxyvinyltransferase): (8.7e-126)" FT /note="SPTR top hit: 'Q3PWP7 UDP-N-acetylglucosamine FT 1-carboxyvinyltransferase. Nitrobacter hamburgensis X14., FT evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0246 EC=2.5.1.7 FT category=Unassigned, evalue=0.0, 93.676815% identity hit'" FT /note="COGs: 'evalue=1.0e-171 score=593 category=M FT group=COG0766 UDP-N-acetylglucosamine enolpyruvyl FT transferase' " FT /note="InterPro IPR001986:IPR005750" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MDRIRIVGGNKLNGTIPISGAKNAALPLMIAALLTEETLILDNVPRLADVAQLQRILGNHGVDIMSAGKRSGDHEYQGQT FT LHISAANVIDTTAPYELVSKMRASFWVIAPLLARMHETKVSLPGGCAIGTRPVDLLIMALEKLGAEVAIDGGYVIAKAPG FT GLTGAEVDFPKVTVSGTHVALMAATLAKGTTVITNAACEPEIVDVADCLNKMGARVSGAGTPRIVIEGVSRLGGARHTVL FT PDRIETGTYAMAVAMTGGDVLLRGARPELLQSALDVLTEAGAVITPNNEGIRVARNGAGINPVIVSTAPFPGFPTDLQAQ FT LMALMTRAKGSSHITETIFENRFMHVQELARFGARIHLDGETATIEGIGILRGAPVMATDLRASVSLVIAGLAAEGETMV FT NRVYHLDRGFERLEEKLSGCGASIERISD* " FT gene 316402..317691 FT /locus_tag="Nham_0285" FT /colour=9 FT CDS 317895..319190 FT /locus_tag="Nham_0286" FT /product="Histidinol dehydrogenase" FT /EC_number="1.1.1.23" FT /note="PRIAM: Histidinol dehydrogenase" FT /note="PFAM: histidinol dehydrogenase: (1.7e-192)" FT /note="SPTR top hit: 'Q3PWP6 Histidinol dehydrogenase (EC FT 1.1.1.23). Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0247 EC=1.1.1.23 FT category=Unassigned, evalue=0.0, 93.939394% identity hit'" FT /note="COGs: 'evalue=1.0e-151 score=529 category=E FT group=COG0141 Histidinol dehydrogenase' " FT /note="InterPro IPR001692" FT /codon_start=1 FT /transl_table=11 FT /colour=10 FT /translation="MPIRIDSRSADFASRFKAFLATKREVSADIETATRAIVDDVAARGDVALIEATRKFDRLSVDAAGLRFTAAEIDAAVEAC FT DTATLDALNLARDRIELFHRRQLPKDDRFTDALGVELGSRWTAIEAVGLYVPGGSAAYPSSVLMNAVPAMVAGVARVVMV FT VPSPDGRINPLVLAAARLGGVSEIYRVGGAQAVAALAYGTATIAPVAKIVGPGNAYVAAAKRLVFGKVGIDMIAGPSEVL FT VIADDTGNAGWIAADLLAQAEHDANAQSILITDSDALAADVERAVDTQLATLPRADIARASWTDFGAIILVRSLGEAVTL FT ADAIAAEHLEIMTADPESLAARIRNAGAIFLGPHTPEAIGDYVGGSNHVLPTARSARFSSGLGVLDFMKRTSILRCGPDQ FT LRALGPAAMTLGKAEGLDAHARSVGVRLNLQ* " FT gene 317895..319190 FT /locus_tag="Nham_0286" FT /colour=10 FT CDS 319187..319681 FT /locus_tag="Nham_0287" FT /product="Uncharacterised conserved protein UCP032146" FT /note="PFAM: Uncharacterised conserved protein UCP032146: FT (5.1e-119)" FT /note="SPTR top hit: 'Q3PWP5 Uncharacterised conserved FT protein UCP032146. Nitrobacter hamburgensis X14., FT evalue=1e-112, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0248 category=Unassigned, FT evalue=1e-82, 93.939394% identity hit'" FT /note="COGs: 'evalue=1e-63 score=236 category=S FT group=COG5328 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR008321" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSKTPPKEDSRNRIVAVMLDEDSIGRSGPDIEHERAIAIYDLVEKNLFAPEGAGGGPFTLRIAITGNRLMFDIRREDDAP FT VVTHLLSLTPFRRIVKDYFMICDSYYQAIRTATPDKIEAIDMGRRGIHDEGSRTLQERLNGKVRVDFETARRLFTLISVL FT HWKG* " FT gene 319187..319681 FT /locus_tag="Nham_0287" FT /colour=13 FT CDS 319776..320243 FT /locus_tag="Nham_0288" FT /product="protein tyrosine phosphatase" FT /note="PFAM: low molecular weight phosphotyrosine protein FT phosphatase: (1.9e-16)" FT /note="SPTR top hit: 'Q3PWP4 Low molecular weight FT phosphotyrosine protein phosphatase. Nitrobacter FT hamburgensis X14., evalue=2e-85, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0249 category=Unassigned, FT evalue=2e-79, 94.736842% identity hit'" FT /note="COGs: 'evalue=1e-26 score=112 category=T FT group=COG0394 Protein-tyrosine-phosphatase' " FT /note="InterPro IPR000106" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="MAAPARVHNPQSVLFACAHNSVRSPMAASLLQHMFPRTLYVKSAGVRTGQLDPFAVAVMAELGQDISKHRPMTFEEIEDW FT EGLNFDLIITLSPEAHHKALELTRTIAAVVEYWPTPDPTSIEGNREQRMQAYRNVCDGLLSRIRKRFARGGGVGL* FT " FT gene 319776..320243 FT /locus_tag="Nham_0288" FT /colour=15 FT CDS 320355..321692 FT /locus_tag="Nham_0289" FT /product="putative transposase " FT /note="SPTR top hit: 'Q3PWP3 Putative transposase. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'bja:blr8270 category=Unassigned, FT evalue=0.0, 86.067416% identity hit'" FT /note="COGs: 'evalue=2e-38 score=153 category=L FT group=COG5659 FOG: Transposase' " FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MVDTRSKWEDELGRWLKPFLDRLGHKARRRMCPLYVSGLIGPGDRKSVQPMAARLAPNDYDQLHHFIADGVWDAAPLESE FT LLIQADRLVGGKDAVLVIDDTAMPKKGDRSVGVAPQYASSLGKTANCQTLVSLTLARGEVPVMVALRLFVPESWTSNPVR FT LKRAGVPVEHRAARTKPEIALAEIDRVMAAGMRFGCVLADAGYGLSAPFRQGLTTRGLAWAVGIPRHLKVYPVGVKLIWP FT VAGRGRPRKRHIPDILSRAAEDMLANAKWQNVSWRNGTKGRLEARFAAVRVRTADGPPQRIKDMGQQHLPGDEAWLIGEH FT RTSGEKKYYLANLPAKTKLRALAATIKARWICEQAHQQLKEELGLDHFKGRSWQGLHRHALMTMIAYAFLQHRRLAQAGR FT KKKNQRSTASAEPAGRTPSHRRSHRSTTTSAVRILPKTNRRKAAA* " FT gene 320355..321692 FT /locus_tag="Nham_0289" FT /colour=2 FT CDS join(321785..322213,322212..322307,322311..322361,322361..322429) FT /locus_tag="Nham_0290" FT /product="transposase IS200-like" FT /note="PFAM: transposase IS200-like: (2.3e-27)" FT /note="SPTR top hit: 'Q3PWP2 Transposase IS200-like. FT Nitrobacter hamburgensis X14., evalue=1e-82, 99% identity FT hit'" FT /note="KEGG top hit: 'plu:plu4843 ISPlu2A FT category=Unassigned, evalue=1e-31, 47.656250% identity FT hit'" FT /note="COGs: 'evalue=7e-24 score=103 category=L FT group=COG1943 Transposase and inactivated derivatives' " FT /note="InterPro IPR002686" FT /codon_start=1 FT /transl_table=11 FT /evidence=not_experimental FT /colour=2 FT /pseudo FT /translation="VWDCKYHIVWVTKYRFAVLGGDVGFRARELLREIALSHEMVIHAGA FT INRDHVHLLLSIPPHLSVSRAVQYLKGKSSHKPLTEYQSLRKRYWGQHLWGRGYWVASSG FT NVTDEVWKKYIEGQKPPEPDDSVHSRRRRALCRQELWGDAGNTFVIPSYTLFDATMSYDL FT AYLRPDMKGKMQVNATNLADRYYVHVLTGLPYCAMGTGRTVFGTLRYSW" FT gene 321785..322429 FT /locus_tag="Nham_0290" FT /colour=2 FT /pseudo FT CDS join(322473..322610,322610..322930,322932..323579) FT /locus_tag="Nham_0291" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWN9 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-116, 99% identity FT hit'" FT /note="KEGG top hit: 'pae:PA1909 category=Unassigned, FT evalue=1e-56, 60.655738% identity hit'" FT /note="COGs: 'evalue=2e-11 score=62.3 category=S FT group=COG3182 Uncharacterized iron-regulated membrane FT protein' " FT /codon_start=1 FT /transl_table=11 FT /evidence=not_experimental FT /colour=13 FT /pseudo FT /translation="MTQKTLRKWSCVHKWSSIVCTLFMLMLCITSLPLIFHDEIYALLHD FT SGRGAVVPEGTTAPNLDRVVASKVAAMPDQVPHFLIWDRDDPNAMLVSVGKTIDANPADN FT RIVRVDNHTGAYLDAPTGRFIYIMLKLHTDMFADLPGKLFLGLMGTLVAIISGVVVYAPS FT MRKQKFGVYRTERPRVVRWLDLHNLAGILLVMCTLVVGFTGVINTWANLVLKAWQYGQLA FT EMTAQYRNRTPPAHPTSVQAAAQVAAKAEPGTLPSFIAFPGTIFSSKSHYAVFMRGDTPV FT TSRLLKPALVDAETGKLTDSRDMPWYVTTLFISQPLHFGDYGRMPLKIIWALLASISGCG FT ANRAKAPLADAAVAVNRPMLSS" FT gene 322473..323579 FT /locus_tag="Nham_0291" FT /colour=13 FT /pseudo FT CDS 323887..324510 FT /locus_tag="Nham_0292" FT /product="maf protein" FT /note="TIGRFAM: maf protein: (1.1e-43)" FT /note="PFAM: Maf-like protein: (3.1e-58)" FT /note="SPTR top hit: 'Q3PWN8 Maf-like protein. Nitrobacter FT hamburgensis X14., evalue=1e-113, 100% identity hit'" FT /note="KEGG top hit: 'rpa:RPA4527 maf2 FT category=Unassigned, evalue=1e-101, 88.888889% identity FT hit'" FT /note="COGs: 'evalue=6e-58 score=217 category=D FT group=COG0424 Nucleotide-binding protein implicated in FT inhibition of septum formation' " FT /note="InterPro IPR003697" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MTGRLKLVLASGSPRRLSLLNQAGIDPDALRPADVDETPERGELPRACANRLARAKADATLKAVQLDDDLRGSFILAADT FT VVAVGRRILPKADLADEASQCLRLLSGRNHRVYTAVCLVTPKGNCRQRLIETRVRFKRLTEEDIRGYVGSGEWRGKAGGY FT AVQGIAGSFVVKLVGSYTNVVGLPLYESVSLLGGEGFPIRSGWLNAG* " FT gene 323887..324510 FT /locus_tag="Nham_0292" FT /colour=9 FT CDS 324500..324682 FT /locus_tag="Nham_0293" FT /product="protein of unknown function DUF329" FT /note="PFAM: protein of unknown function DUF329: FT (2.7e-15)" FT /note="SPTR top hit: 'Q3SVZ8 Hypothetical protein. FT Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391)., FT evalue=4e-23, 78% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0276 category=Unassigned, FT evalue=2e-23, 78.333333% identity hit'" FT /note="COGs: 'evalue=3e-09 score=53.5 category=S FT group=COG3024 Uncharacterized protein conserved in FT bacteria' " FT /note="InterPro IPR005584" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPARKPAGARPEKPCPICGKPAVAASRPFCSERCRDVDLNRWLSGSYVIPVSKTDGEDAE*" FT gene 324500..324682 FT /locus_tag="Nham_0293" FT /colour=11 FT tRNA 324825..324900 FT /locus_tag="Nham_R0006" FT /gene="tRNA-Phe1" FT /note="anticodon GAA, Cove Score=88.73" FT /product="tRNA_Phe" FT /colour=8 FT CDS 325063..326262 FT /locus_tag="Nham_0294" FT /product="phage integrase" FT /note="PFAM: phage integrase: (1.1e-23)" FT /note="SPTR top hit: 'Q3PWN7 Phage integrase. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'mlo:mll5763 category=Unassigned, FT evalue=1e-135, 61.025641% identity hit'" FT /note="InterPro IPR002104" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MLTQLAITAAKPKAKPYKLSDGAGLSLLVETGGGKLWRFRYHFGGKEKMLSFGAYPEVTLAQARAKRDEARQTLAGGIDP FT AQKRKEDKVAASISAANTFGVVAAEYIDRLEKEGAAPSTVSKNKWLLQDLASPLTKRPIADILPAEILDLCKRVEKSGRR FT DTARRLRGTIGSVFRYAVVTLRAQSDPTYALRGALLKPEVNHRAAIVDEAKLGALMVNIDQYDGWPTLRAALLLLALTMT FT RPGDVRHMRKSEIIFPKALWRIPAERMKMRRPHDVPLSKQALAIIREVWDLTAGNGLLLPSIRSAIKPLSENAMNSALRR FT MGYSKEEATAHGFRSSASTILNERGFNPDVIEAALAHQDEDDVRRAYNRATYLPERAKLMQDWADLLDEFRTLSLRHVA* FT " FT gene 325063..326262 FT /locus_tag="Nham_0294" FT /colour=11 FT CDS 327478..328680 FT /locus_tag="Nham_0295" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWN6 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'sil:SPO1224 category=Unassigned, FT evalue=2e-54, 36.994220% identity hit'" FT /note="COGs: 'evalue=2e-07 score=50.4 category=U FT group=COG3505 Type IV secretory pathway VirD4 components' FT " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSLPEDRCTARAASFEQMHSYIIGKSGVGKSTFLENHALENEGSFAFLDPHGDSAEKLADTIDCIFWEPSDTEHVIGFNV FT LENVPEPQRHLVAAQVVSSFKAIWGDSWGPRLEWILYNSVSLLLDNNGSLLDIPKLLTDSGYLSKCLRPLHKRLIKNPTD FT HAAGARRNFWLYEFDALQPRERAAAISPVLNKVGQLAANPVLSGILRHNTIDISRIMNRGQRLVVNLSKGQLGEEPSHLL FT GALLVSAFAQAAEGRANIPFAERRPFTLYVDEFQNFATNNFSRILSEARKYRLDLVLAHQFLGQLPDLLRQAVFGNVGRF FT ISFKIGSEDAPVIARELGFPATAEELIDLNRFEAWERSTSIMPKQFKTAAPIAGRGRLAAVRRRTWSRYTTATRLSKRSY FT * " FT gene 327478..328680 FT /locus_tag="Nham_0295" FT /colour=13 FT CDS 328825..329229 FT /locus_tag="Nham_0296" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWN5 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=3e-71, FT 100% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRVSIACIEKSRVLFFPVAPRTRVSVRLILERDEDIIIRHYGFQSHVLVSRKPTVVIDEREEADGRGHVRVAKDKREIDN FT NIRLRAFMGKDAEWQFPHPSAANAFIAELRQGFLKFKEFLVANGAPAQGDIFDV* " FT gene 328825..329229 FT /locus_tag="Nham_0296" FT /colour=13 FT CDS 329222..332593 FT /locus_tag="Nham_0297" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWN4 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'sil:SPO1230 category=Unassigned, FT evalue=2e-23, 25.925926% identity hit'" FT /note="COGs: 'evalue=7e-05 score=43.7 category=O FT group=COG0484 DnaJ-class molecular chaperone with FT C-terminal Zn finger domain' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MYRILIAALLSMLPISSYAAKGYFTELPSGQWLVFTPEQVGRYAKADREYCAVALKRGIEQNARLNNEPQDCLEGVAFGP FT AVGEGPVLTLGAGFDSRIPGLRTRLSVPSWVGQHDALVLDEYVSSALELYQWAHGLPETGTLDAVTVGTLDRNVRTTSVP FT NDQQALTNIEPQPAPESELAETQTETRTPLLEKSTAAPLPMQAGPMIAPQVPPSTAMIDLRSLSQFLFALTILFLVFRGR FT LAIDWALNVGGPRVASAARSPRVKSFLLRAWDALNRIYAFLKGSPVVPKAVGVAGGLIAYFFNEPRRLAAWGLVIWFALS FT VLLSLSIGNAPGLFGWFIVGLFFLAQADYHFLILRGENRVLAYKKAARIIVFVIFPLFFTSLVLVGFLALGSPKQQGAGV FT LAILIGLPTAILYFCFLRAYRDAEWASLCKYEKMYASAGDGFTSIDLAQRILSQLPSTSLRVEPVIEALKEELLGGMPEP FT PESRFDLHDHAAYRAMLEQLSFATPEAEDLFVEMVVAALMTIVPKFPKPAGAPMFTTRMEDPLSAVCDFMQCLIHPRAVQ FT LRVLERLRTAFNRNVGELQARKAGLTIDAALELALKDTPLLDLFRSHLPYELEISDEFLYGGIHICAPPGGMKTQLTQTL FT VLHLAHYFNDPALIVVDSQGPILDLLERKFAPQLGASFLRIHPHKAPININPFDVDFSGMTEAEQGSAITSVADFFVALF FT ATGSSELSGKMKTLFDQVVRLFLVGIPAVQKRTATMRDLHDFMASSQPWAKYKAEIEYLDDDGRMFFDKHNISGYSDTRL FT QVHQRLYEVLRDPAIRKMLCAERNELDLDRYLDGPGMVLVDTSGNLGFENAAFFGRLFILLAQQSMMRRIPAPTGDPYPA FT FLLCDEAHEYFKAEGVLRQFIYQGRKRRFGIVLTHHQYSQAPGALQDALEHMAVHFTTRVAPNDMARLSGIFHAPPSFLQ FT AQRPEPVKAPKLPKWIDYALYYPSLEHAISVRLAYGNLENFDTSNMYRGARNRSQQGNSGQQNSKQSQSPPPPRPDPVGS FT KDVEWNHTISPIKAKNGCTIADFKMPDGTLADIVIRPGTVDGTKLRFKGRSGQGGDFFLKIIVPPMPEQSDREDMDMGAA FT PWP* " FT sig_peptide 329222..329281 FT /colour=11 FT /locus_tag="Nham_0297" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.966 at FT residue 20" FT gene 329222..332593 FT /locus_tag="Nham_0297" FT /colour=13 FT misc_feature order(330143..330202,330215..330283,330326..330394,330413..330481) FT /colour=11 FT /locus_tag="Nham_0297" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS 332707..333642 FT /locus_tag="Nham_0298" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWN3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSQATKRLNRWSDEPIRGKDGKPRAAKIVDTDYPVFERFNRYRDMGTSFIVAFNKTNPIALQARLNLLSREPNRYLYRPL FT QQRNVPNENYKDQSYRVADKAVALMRKRSAWRDDIEPFGDSKFYPHSRMTNDAIQSLELFAPKMIWRHEIPKATNRLPVE FT VSCTLPNGAFASAKFDYQNDSHGPFGINYGGSARFLSLESEHHGEVDANNLERPSFLKKFLAIRYIAQHELYRTEWGLPH FT LLSLFVCTDQHEIDRRKAIVMRETGGKGASYVLFQVVPAVDESMTSVKPMPELYEGPWQRAGYPDFYLSQP* FT " FT gene 332707..333642 FT /locus_tag="Nham_0298" FT /colour=13 FT CDS 334182..334670 FT /locus_tag="Nham_0299" FT /product="HNH endonuclease" FT /note="PFAM: HNH endonuclease: (2.5e-08)" FT /note="SPTR top hit: 'Q6XQ94 Putative endonuclease. FT Enterobacteria phage T1., evalue=4e-23, 41% identity hit'" FT /note="KEGG top hit: 'rsp:RSP_6243 category=Unassigned, FT evalue=4e-12, 35.036496% identity hit'" FT /note="InterPro IPR002711" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPDILDLLVYEPTTGVLYKKHKLGRKHYSGYIICEIGGKHHAIHRLIWQLERGPIPEGFFVDHIDGNRSNNRLDNLRLVT FT MEGNAHNMAMTSRNKSGRIGVCWAPSQKTWFAYINVDKKLKILGRTKTKQEAINLREEAERKYGYHQNHGRRATPKDVAL FT AA* " FT gene 334182..334670 FT /locus_tag="Nham_0299" FT /colour=11 FT CDS complement(334671..334883) FT /locus_tag="Nham_0300" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWN2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=4e-35, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPNGNPPVVKFRLGSVTASVWQNEKHYNVTLAKSYKDGEEWKETDSFGGGDLMNAVRVLQRAESFISDQH*" FT gene complement(334671..334883) FT /locus_tag="Nham_0300" FT /colour=13 FT CDS 335082..335732 FT /locus_tag="Nham_0301" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWN1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-122, 100% FT identity hit'" FT /note="KEGG top hit: 'tfu:Tfu_0866 EC=2.7.7.- FT category=Unassigned, evalue=5e-06, 28.333333% identity FT hit'" FT /note="COGs: 'evalue=4e-06 score=45.1 category=L FT group=COG0358 DNA primase (bacterial type)' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPFVDFAEIRERLSIEDAAEMLPVKWKSEGQQLRADCPVHGGERSLIITPAKGLFVCKATTDAKKGGDCIALCAHVMQTT FT NFEAGQYLAQQIGTLARKSTVNSDSNSTVSKERATVPQKREGGTASAQPAPNFDPVAFAAKLVFSEEVAALGFSEEDAEH FT FGVGFYRGKVYAPLRHPTGEIACFYDYSNGTLKLPARARWLEESAPNVIPFGKKTA* FT " FT gene 335082..335732 FT /locus_tag="Nham_0301" FT /colour=13 FT CDS 336851..337783 FT /locus_tag="Nham_0302" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWN0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-180, 100% FT identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKLQTIKCSDGYFLKDAVGLRFGKEDVTATWNREWFKVSSVEGRQVYRVTLATQRLSGYSLKPEFVATDAMPSSVGVDFF FT AYSDDKQNNAHLRGLYEPTYEPVPEKAEPIEIELEIIATVDGELVQKAMNFPVYGTYSHEGKRWSVTEQSIQVSLLDRIT FT APSLLHQEVPCQLSSEDSFKIIRTHVKDNIDPKVAAITSDYDFCLTVQKKIKLAEPEPYTRDANFSFFGRRRKPRMVTDY FT RTERKLVVYETAPLRGGEVYKGYTKTEPFTGHNVQELKQNIEAYLKELMAEINKPLVDCPNCKGHGVMTA* FT " FT gene 336851..337783 FT /locus_tag="Nham_0302" FT /colour=13 FT CDS complement(337780..338496) FT /locus_tag="Nham_0303" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWM9 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-132, 100% FT identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRQVHFRASRAYPLVSANKEARVSYTVIKTIKGRQYYYEQTARYRNGKRTPLMRYIGPVDPKRQRKRIALSDIFRALFEV FT GGYVAVKGTKRPDYKVKDIESGRTCQMRQANLKALYKQYGVDLSSPQAFSATSAHLSQAQRQELMHKVLAAGRAARAPKA FT PEAKFDWSGLEAKMAANKAARQTAQDAPGRTQEAPAKNFTVDDEIEAREAKFEAAVDEYNAGTTAAPDAPAPDDAPES* FT " FT gene complement(337780..338496) FT /locus_tag="Nham_0303" FT /colour=13 FT CDS 338590..338937 FT /locus_tag="Nham_0304" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWM8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=4e-63, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSHKIELRLETFVCGLFIIQPRHNEADFETLIGEFLAPSVKRQFTEAYHDLEGSKGGCFCRDDQTPWVIVAFGSDPDTIR FT RTTLHEVVHLAEKLTCTREMRARFVEHVYFALRLP* " FT gene 338590..338937 FT /locus_tag="Nham_0304" FT /colour=13 FT CDS 339098..339466 FT /locus_tag="Nham_0305" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWM7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=2e-67, 100% identity FT hit'" FT /note="KEGG top hit: 'lpl:lp_0653 category=Unassigned, FT evalue=2e-08, 39.325843% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MINVCTLEMMIDTDERYISKSEGWYGENNRIEFSLSDVKPMQFTGLRDKNGTEIYEGDIIHCTAGMHTLERNFQTDEKKV FT ITFDDGAFRYDGITLGDMVNAHMSDYTFEIIGNIYENPELLK* " FT gene 339098..339466 FT /locus_tag="Nham_0305" FT /colour=13 FT CDS 339511..340377 FT /locus_tag="Nham_0306" FT /product="antirestriction protein " FT /note="SPTR top hit: 'Q3PWM6 Antirestriction protein. FT Nitrobacter hamburgensis X14., evalue=1e-165, 99% identity FT hit'" FT /note="KEGG top hit: 'mlo:mlr6154 category=Unassigned, FT evalue=1e-58, 43.402778% identity hit'" FT /note="COGs: 'evalue=6e-68 score=251 category=L FT group=COG4227 Antirestriction protein' " FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="LGVQQLYEQVTRTIISEIEAGNLPPWLQPWKAGKRGGIIPINAVTKKSYNGLNVLMLWAERQEKQYALAEWLTYKQCQEA FT GGQVRKGEKSTPGIYVNKQVIEKGTEEERLVPFMRQFALFNVAQCDGLPQNEPIADLPEHERNEQAEAFFAAIGATTRWG FT EPKAAYSPSLDIIVMPERGAFLNPESLYATWAHEHIHLTGHKSRLDRDLKSRFDQDAYAFEELVAEIGAAMTCAHLQVKG FT ELRHASYVDHWLRVLKQDSRAILSAASMASKATDYLRAFSETKQEEAA* " FT gene 339511..340377 FT /locus_tag="Nham_0306" FT /colour=2 FT CDS 340648..340911 FT /locus_tag="Nham_0307" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWM5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=3e-48, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MEKEWPTGGGYYSSYEKEGEDIAAEFGLTLNDQAVWSDRFFNHLDVANWHKPPTLDVVIERAAGFKKEHPLCPYSSHWLVEDFARRL*" FT gene 340648..340911 FT /locus_tag="Nham_0307" FT /colour=13 FT CDS 340991..341329 FT /locus_tag="Nham_0308" FT /product="endodeoxyribonuclease RusA" FT /note="PFAM: endodeoxyribonuclease RusA: (6e-13)" FT /note="SPTR top hit: 'Q3PWM4 Endodeoxyribonuclease RusA. FT Nitrobacter hamburgensis X14., evalue=2e-57, 100% identity FT hit'" FT /note="COGs: 'evalue=3e-08 score=50.3 category=L FT group=COG4570 Holliday junction resolvase' " FT /note="InterPro IPR008822" FT /codon_start=1 FT /transl_table=11 FT /colour=0 FT /translation="MLSIILEGQPVSVNQLYRGRRFLTTDGKRTKLLNAVSARKQYRGAPLEGPVCVELQVYFKSKASSDIDNVCKAALDSLTG FT ILWKDDRQIQELHAYKLQDKLRPRIELTLSQL* " FT gene 340991..341329 FT /locus_tag="Nham_0308" FT /colour=0 FT CDS 341665..342351 FT /locus_tag="Nham_0309" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWM3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-132, 100% FT identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTGPELETFCEEINGGASIGATVLFQFINLAKAMVEQTRPWVALLYTDTSKTVATGNTWQTAIDLSTVARFNRFYGETPI FT KVFDGNNSFQRYRQVPFNERLLYRNTPGTFVYDEANKTLYLNGTVQFAGTLYIDHIKDSPEITNDDSSSWIFPSWAHPLL FT GFYAVAINKGGVDYDDINARMAPENRAQAKVITDRLEWLDNEKQLQAQQNIDPYQSDDAWRPGAIYIS* FT " FT gene 341665..342351 FT /locus_tag="Nham_0309" FT /colour=13 FT CDS 342348..342707 FT /locus_tag="Nham_0310" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWM2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=3e-67, 99% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKKILVPIFTEEYKIWVYIGSRAELVKAAAKYIGETEAKFDKEFVGRGQALDYIDKGLYPLIIVDGRLPVRTALATLAHE FT ASHSMDSLERYIGIKDKHGEFRAHGIAAVVRTVSKHLQK* " FT gene 342348..342707 FT /locus_tag="Nham_0310" FT /colour=13 FT CDS 342710..344599 FT /locus_tag="Nham_0311" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWM1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRIPDYTVSQFSGLNTFIKDLKTLKPGVATDSLNWVTGKYGDHIELRRGSALLGNTRVNGAGKITGLGVGTRYDGVQVPF FT WSRGRKLEYYNAATDDRAEVGSDILPVTADGEDCWFSPYANLAGSMMYAGSPNSGIYKIPVANPGSAVDQLVNNFRFGIL FT RFGQGRAFAGQRNGTTAGNLDKTGLYLSDIDKANLSLYTQTTAEAVGSSGGTHYAGTLAVVTGKKTCMYVAVKEAGGETL FT TDDRNGTLVGTQGSLGTINYATGAYDVTFNHATAGAVTADYYTEDATSDGPLDFDTSSTGAGKAKIFRQDDGGAFMAVLP FT FLDVEYAFHLLKTYAVTTTIDDTSATNLPYRNIGIPNPRAAKETPDGILCIDVSNPSDPKVRRLEIGQNTNNLTIVPTSI FT FDAVDLSAHAFDYAVAFRWGDYEIVCCQELTNGMANAYNSVMYVRNVYSHAIDKLDFRASCLDIFNGALIGGDPISSNVY FT TLFSGFDDDEAAIENYWQDGQLNLGTDRLKRAHYMRVTGHIMKDQSINVSLVLDDGQPVEAFTIEGDGDYVDQGINTPIG FT SYTIGSKVVGGRGEATAHPFDVTFPIHTDRFQNISVRFRAMGIGHAAVNSYSYRDIRDKGSRSLPIKTI* FT " FT gene 342710..344599 FT /locus_tag="Nham_0311" FT /colour=13 FT CDS complement(344586..344912) FT /locus_tag="Nham_0312" FT /product="uncharacterized conserved protein-like" FT /note="SPTR top hit: 'Q3PWM0 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=4e-56, 99% identity FT hit'" FT /note="KEGG top hit: 'tfu:Tfu_0065 category=Unassigned, FT evalue=2e-17, 46.938776% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VDVLKQEFQVELFNAYKRAKDEAKYHATIFIQMLTDRGGLETAKFLINSPKVSDGYTALYERERLDLTVEAIVAENSKWH FT PLFTTEEIDRCHKRLAQYGYTPRLSKSS* " FT gene complement(344586..344912) FT /locus_tag="Nham_0312" FT /colour=11 FT CDS 344959..346329 FT /locus_tag="Nham_0313" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWL9 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'mag:amb4279 category=Unassigned, FT evalue=2e-21, 33.128834% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLHAIASAFIGVATFISSLFGAAPATGPSLGAALPSGTAVFETSLQSRISSTDTSLTLVSNSVRGGSALSGYNCFTVDEG FT RTDAEYVCGTISGTSVTSLTRGIDPATGTSTNSTLKFAHRVGSDVKITDFPLLQILRNQANGADAYEHALTYAAGVTPAN FT TGDLTDKEYVDGVAFSGAGVIDASTIAKGVVELATGAEAAASTASGGSGPLALPASLATSTYNSATAGNVVPVTDAATKA FT IDQNFLPATTTKVFQFASSTYIGFFPAYTIGKNSQIFTSTGTSTFAVPSGITKVQVQVQGAGGGSDLAGSGAGGTCIKTV FT DVSATTSVQVFVGAGGAAGTSGGTGTAGGWSTFGTNGFYCSANGGSGSGTASSPGSGGAATSGDLNITGQAGSPVFDGAT FT ARGGDGGSSMLGFGGRGVAATSGANPGTGYGSGAGGANAGNTGGTSGGNGIVIVRW* FT " FT sig_peptide 344959..345054 FT /colour=11 FT /locus_tag="Nham_0313" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.997) with cleavage site probability 0.487 at FT residue 32" FT gene 344959..346329 FT /locus_tag="Nham_0313" FT /colour=13 FT misc_feature 344971..345039 FT /colour=11 FT /locus_tag="Nham_0313" FT /note="1 probable transmembrane helix predicted by FT TMHMM2.0" FT CDS 346336..347844 FT /locus_tag="Nham_0314" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWL8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="COGs: 'evalue=7e-04 score=39.2 category=M FT group=COG3264 Small-conductance mechanosensitive channel' FT " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPTATPYKNPDEASAGLGAAFAPTNDAQKAAIASAAAMVPGQNPVVSPIQRTIDPGADAATKYLDTFQAPETADQIAERL FT RQGSQGSIDAINKVYDDQVNANNVVGQERLAQDNAISVLSGLTGSTEAGRTRGAVLDKNDKETQAINNERLLKLQSLYSQ FT ISQQAIDQAQQQREDATKSANDIVTRRKDAQAQTLDTLKSIAAGGLVDFDSFKSSPQNAQVYQHALDAVGGSEQALRGLF FT AVNRPQDQLVGTPTRVGDHFIQAYQNPITGKVSYDKVEVPGGLPAQYNNFQKIGDSIVAIPDGWDGDTSKLKVIAGGSSD FT GSSGAPGDNPQLYAGLSTKTATAVRAQVAAFKTEPLVQNFGIIQEGRNFAGSLSNTTKNPADDQGLIYALAKALDPGSVV FT REGEYATAQKYSQSWINAYGKGVSQAIMGTGFLSEQARRNIKDTIEARYKASLQSYTHLEGQYQTGINNLTGRDDGAKFV FT RDYQTSSDSSGGSDSDPLGLGI* " FT gene 346336..347844 FT /locus_tag="Nham_0314" FT /colour=13 FT CDS 347848..349305 FT /locus_tag="Nham_0315" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWL7 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MPTTQAQPQPSAKLSADQFAQSIKAKYPQYASVDNATLTQKMLAKYPQYADKVDTAPAQKPGILPRIASDVSQSFNERSQ FT NVAQSKADVQSGKQGLFHGLLQSAGQAAGLVGDTLFAAGKEAVRSVAPSAIPAVKGVLTSIASSKPVQDIAKAGGDFAAK FT HPVIAKDAAAIGNIASILPIGKIGQVAAKGAQVGLKAAGTAAAKTGERVIASQAAKTASRTTETAFRDALDISRPKMTSK FT LEQQAFNEGRVGKQGIFKPAAVAPSAQETRVAEALQPLVEEGRVSPKFAPAKNREEINIEVSRINHEVEQHAHDPRFNQP FT FNETQLRTRLKAAKNDLSIVFASDPTIERTYDAVADALVKSVGKKNIAGLFAARKSFDGIPAVKKLLDGLKGADGENLRR FT EVVLTVRGAANDLIGDYLPVYKDAMRRETSLLRASENIGTKIRGITQEGRAMSFLKTPKGKLLKQAAIGAGVAGGAISGG FT EAILR* " FT gene 347848..349305 FT /locus_tag="Nham_0315" FT /colour=13 FT CDS 349822..350184 FT /locus_tag="Nham_0316" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWL6 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=2e-62, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLQVATFLVPAEQDKANEFLKAHKPVGNINFNKDTIVVFYEDDPAADIVELLESVGNAKFQQGIALHMLKRDIAGLNPVH FT NKGKYEELDNAIRATQEAMDDQDAKADYLKGLIEEKRAAK* " FT gene 349822..350184 FT /locus_tag="Nham_0316" FT /colour=13 FT CDS 350187..350573 FT /locus_tag="Nham_0317" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWL5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=4e-67, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MARGTKENPTLKQQRAIQLLYTEVTRPTGKSIVQILKDAGYAEESARQWTNIMAGLRPHLKPALDWMEIHRQKVMAKMDE FT HLEYATYDELRKSLASLTEAIQLLGGKPTANIAISAEVRHRIDELIED* " FT gene 350187..350573 FT /locus_tag="Nham_0317" FT /colour=13 FT CDS 350726..352225 FT /locus_tag="Nham_0318" FT /product="Integrase, catalytic region" FT /note="PFAM: Integrase, catalytic region: (1.4e-10)" FT /note="SPTR top hit: 'Q3PR54 Integrase, catalytic region. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'bja:bll8200 category=Unassigned, FT evalue=0.0, 93.360161% identity hit'" FT /note="COGs: 'evalue=1e-17 score=84.7 category=L FT group=COG4584 Transposase and inactivated derivatives' " FT /note="InterPro IPR001584" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MLIVETIARIRREHFIKGKTIKEIARDLKVSRNTVRKVLRSGETSFEYERAVQPRPKLGRWAADLDGLLASNAAKSAREQ FT LTLIRVFEELRGRGYDGGYDAVRRYARRWSQERGQSTAAAYVPLSFAPGEAYQFDWSHEVVLLHGVTVIVKVAHVRLCHS FT RMLFARAYPRETQEMVFDAHDRAFALFKGTCGRGIYDNMKTAVETIFVGKGRLYNRRFMQMCSHYLVDPVACTPASGWEK FT GQVENQVGLVRERFFTPRLRFKTLDELNAWLLDKCIAYAKAHRHPELTEQTVWEVFEAERPKLVPYAGRFDGFHAVPASV FT SKTCLVRFDNNKYSVTANAVGRPVEVQAYADRIVIRQDGRIVAEHPRSFGRGETTYDPWHYVPVLARKPGALRNGAPFKD FT WVLPAAIERVRRKLAGADDGNRQMVDILNAVLTDGLPAVEAACAEAIAHSVHSADVVLNILARQREPAPPANILTPAALT FT LRHAPIADCARYDNLRRPV* " FT gene 350726..352225 FT /locus_tag="Nham_0318" FT /colour=2 FT CDS 352225..353088 FT /locus_tag="Nham_0319" FT /product="IstB-like ATP-binding protein" FT /note="PFAM: IstB-like ATP-binding protein: (3.1e-73)" FT /note="SMART: ATPase: (6.7e-11) " FT /note="SPTR top hit: 'Q3PR55 IstB-like ATP-binding FT protein. Nitrobacter hamburgensis X14., evalue=1e-160, FT 100% identity hit'" FT /note="KEGG top hit: 'bja:bll8199 category=Unassigned, FT evalue=1e-146, 90.243902% identity hit'" FT /note="COGs: 'evalue=2e-40 score=159 category=L FT group=COG1484 DNA replication protein' " FT /note="InterPro IPR002611:IPR003593" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MERTQLFDLMSELKLYGMKAAFDEIMATAVKRQHEPQRIVGDLLNAEINEKQARSIKYQLTIAKLPLAKDLDGFQFEGTP FT INQTLVNDLAGGGFIAQQRNAVLVGGTGTGKTHLAIAIARSCIRSGARGRFYNVVDLVNRLEIETRNGRQGRIAEHLTRM FT DFIVLDELGYLPFAQSGGQLLFHLVSRLYERTSIVVTTNLAFGEWPSVFGDAKMTTALLDRLTHHCDIVETGNDSWRFKS FT RDDDQTTRARSVSAIPASSDGPSATAKSRRSKGSNLDADTGSNFGAD* " FT gene 352225..353088 FT /locus_tag="Nham_0319" FT /colour=2 FT CDS complement(353245..353643) FT /locus_tag="Nham_0320" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWL2 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=8e-76, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MVFRAQIKDDGKFDFGSDYNLARFKAWCKEHPGKWVRIEEQVSVRSLSQHNFYWVYLGFVSHETGHTPEELHEWAKKKFL FT PRKFATVFGEEVAVTPTTKTLTKLAFGEYLERICAETGVPLPNPQEAGYLPH* " FT gene complement(353245..353643) FT /locus_tag="Nham_0320" FT /colour=13 FT CDS complement(353645..353869) FT /locus_tag="Nham_0321" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWL1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=5e-37, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKKFNVSVPRKYEKDGETKTAWGNVGKLVYFEATDSKEEGFILELNMFPDTKFGVFPDKPREEKSANEASIDLD*" FT gene complement(353645..353869) FT /locus_tag="Nham_0321" FT /colour=13 FT CDS complement(353870..354598) FT /locus_tag="Nham_0322" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWL0 Similar to Uncharacterized FT protein conserved in bacteria. Nitrobacter hamburgensis FT X14., evalue=1e-138, 100% identity hit'" FT /note="KEGG top hit: 'sec:SC0333 category=Unassigned, FT evalue=3e-17, 37.984496% identity hit'" FT /note="COGs: 'evalue=1e-22 score=100 category=S FT group=COG4712 Uncharacterized protein conserved in FT bacteria' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MDLKELKKKIPYQWRVQSYSKNKSSASCVAYIDVRDVMELLDEVCGPENWQSDFRDVGGQVYGGVGIRQYRTIKGPSGDD FT MQLFDEESEWVWKWDTGSESNVEKEKGQASDAFKRAAVKWGIGRFLYDLEIAHVKTDGPLTDSHKYPFVVDDSGNRVWDL FT TKHMNNGSRTAPAAPKVSKPAVVSAAEAKEAALKKEIVDLCHVKSEIPLLTKEDIKAFILKATALEYGEAKNAEIIERLK FT VI* " FT gene complement(353870..354598) FT /locus_tag="Nham_0322" FT /colour=13 FT CDS 355588..355890 FT /locus_tag="Nham_0323" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWK9 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=5e-53, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MYVATQLLCIWHLGIVVVSRCEQRIARFCYAYATITLMKKMTKAEAGRKGAIIRWSRISKKKRSEIMRRVAYARYETCEV FT CEFRAANIGYPSKCPKHSKL* " FT gene 355588..355890 FT /locus_tag="Nham_0323" FT /colour=13 FT CDS complement(356016..356792) FT /locus_tag="Nham_0324" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWK8 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-148, 100% FT identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSEPKDFVSLQHFLFETPIYTPLKLQPGHFPRGDNLRGYCPHCKDESIFKVRFGNTPSIPSNEVMAEFQCKCVQNESHVL FT RFNLRIYRDTVEKCGQFPSYATIEQGSIKGLRKLIPGEDGAELARAIGLASHGVGIGSFVYVRRIFERVIKRKFEELRDS FT ENWPVDALDGKRLDERIQLMKDHLPDFLVRNQKLYGILSLGIHELNEQDCLDFFTIAYSSIKFILDEDRRKREEKAERAE FT AERAIAGYKPPISEAQAS* " FT gene complement(356016..356792) FT /locus_tag="Nham_0324" FT /colour=13 FT CDS complement(356920..358089) FT /locus_tag="Nham_0325" FT /product="phage integrase" FT /note="PFAM: phage integrase: (2.3e-07)" FT /note="SPTR top hit: 'Q3PWK7 Phage integrase. Nitrobacter FT hamburgensis X14., evalue=0.0, 99% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_0275 category=Unassigned, FT evalue=1e-116, 60.895522% identity hit'" FT /note="COGs: 'evalue=0.001 score=38.3 category=L FT group=COG4974 Site-specific recombinase XerD' " FT /note="InterPro IPR002104" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="VPRPNPPRLTKDTDRHGNIRWYVRTLDGPKVRLRDEYGTPAFWQAYRDVLAGNIKPPPPSTRIERKPFDKASLAWLCSQY FT YTSAEYKQLNERTRYVRRATLDHICAADGEKPYKLLLPKHIRARRDARADRPESANGMIKALRQVFAFAIENDYVALNPA FT QAVPYLKAKGDGHHSWSLEEIEKFEKKHPIGTMARLALALLLYTGQRRSDVIVLGPALVREGWLHFTQFKGREHKPITLD FT IPIIPELQRVIDATACGKDTYLLNGLGRPFTAAGFGNWFHDRCKDAKVPGRAHGLRKAAASRLAELGSSEHEIMAITGHT FT TSKEVMRYTKAARQKVLAAAAMARLKPKSEIAVTFPPETDPKSGGKKVPPKSLKNMEVTNLMVPGAEPH* FT " FT gene complement(356920..358089) FT /locus_tag="Nham_0325" FT /colour=11 FT CDS complement(358090..358329) FT /locus_tag="Nham_0326" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWK6 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=8e-41, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_0274 category=Unassigned, FT evalue=7e-19, 67.692308% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTTTHANDNQRGGIVPRGLRRVDAATYICISPSLFDDMVKDGRMPSPRMINSRTVWDRFELDEAFEALPRKEAANPWDA*" FT gene complement(358090..358329) FT /locus_tag="Nham_0326" FT /colour=13 FT CDS complement(358338..358868) FT /locus_tag="Nham_0327" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWK5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=6e-95, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSDFDLSYALQQTLEFRQRTAERHQNDGRNYTAIALIEKLLSETPSADKLESLREAFEAYENEELLAVIDVDNPAPLNNT FT ITGRLGSIGFTWHPAGIDEVVHGIAMEARLARKAMEDARNEAVVSDVIAAMGAETKVFPKSKVDDAFEVMMERACERDAA FT RQRGETPPPPLSVKIG* " FT gene complement(358338..358868) FT /locus_tag="Nham_0327" FT /colour=13 FT CDS complement(358937..359347) FT /locus_tag="Nham_0328" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWK4 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-74, 100% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MLALFRDLTTTFEAKENAGGNSDYDEYEAARNVAKTISFVRPVTAMEALAQIVFLYDEATDIDQANEWTEARCKEWSDRM FT TRRAFALAYWIERTHAIDRREYALANYCSDTLASSVLPHAPAESWHRGGANTKTLT* FT " FT gene complement(358937..359347) FT /locus_tag="Nham_0328" FT /colour=13 FT CDS 359516..360127 FT /locus_tag="Nham_0329" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWK3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-111, 100% FT identity hit'" FT /note="KEGG top hit: 'bja:bll5004 category=Unassigned, FT evalue=3e-06, 36.250000% identity hit'" FT /note="InterPro IPR001063" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MATEAEIYVATPKQLVEKIAEETGVPIGTAILHDRNLLTAGLRSEGQRGRGKSVVTFEDAANLLIAVAGSRNVKDSAETV FT RLYAPLKATAPLVFNDQGKDIVRGETFGDALAALLEALPADRDSYRDPEHGSVEVTIYGPNPAARIIWKVGERGGTIDYR FT PPHKRGAKRMFADLEFISKFTQVTIGHVGEMVAAEGSDPRPKN* " FT gene 359516..360127 FT /locus_tag="Nham_0329" FT /colour=13 FT CDS 360182..361186 FT /locus_tag="Nham_0330" FT /product="Exonuclease" FT /note="PFAM: BRCT: (2.3e-05) Exonuclease: (1.5e-18)" FT /note="SPTR top hit: 'Q3PWK2 Exonuclease. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'cac:CAC0738 EC=2.7.7.7 FT category=Unassigned, evalue=8e-22, 27.272727% identity FT hit'" FT /note="COGs: 'evalue=1e-23 score=104 category=L FT group=COG0847 DNA polymerase III epsilon subunit and FT related 3'-5' exonucleases' " FT /note="InterPro IPR001357:IPR006055" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MSNSDFIVLDVETANADYASICQIGLVEVVAGEVVSQEAILVNPDDYFDGFNTSIHGITADHVCGAPLFHEVHAALSQRL FT SGSIIVHHGPFDRVSISRACERCGIESFDVQWLDNQRVVRRVWEQFSKSGYALKSLAAFFGIEFQHHDALQDAIATNEIF FT RRALNESGTTAADWLSRIKQSLPTTAKTISGDGNPDGPFSGETIVFTGELNIPRSEAADIAKRLGFRVEDGVTKRTTVLC FT AGVQDRTKTGGYDKSSKHRKAESLAGLGQDIRILSEGDFWAIVPKPMRPNVKTERPPSERSNHRGQLIVSLSLEDLFTDE FT ELQRMLTGMPLSDA* " FT gene 360182..361186 FT /locus_tag="Nham_0330" FT /colour=2 FT CDS 361194..362111 FT /locus_tag="Nham_0331" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PWK1 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-177, 99% identity FT hit'" FT /note="COGs: 'evalue=0.004 score=35.9 category=U FT group=COG1298 Flagellar biosynthesis pathway component FT FlhA' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="LPHLSPARYDCDGGAMHRFRTPELFLGCFLTVAVFAAGMLFVQWPYPHQPAYQISAPAAQAESKEKQAESNPAGWSDWLL FT KDAAGFFTFGLVAVGVGQALLFFIQLSLMRKGMTDSTIGIRAARRSAVATVAQARVARDSAIKLQRPYIFVFGVTEFKPA FT QTAFSIDYTVANYGTIPAILEEVFVGFVTSDTTAPELPSRIGDDHDLCTSPILEAGGVRRSLTSIVPTGMDSKAPVNISD FT DAGGWYPARSEPDWVVPPGHEVFFRVVVRYRGPFSSGHETSATWLCERGRKRLIQRGGEDYNYNR* FT " FT gene 361194..362111 FT /locus_tag="Nham_0331" FT /colour=13 FT misc_feature order(361263..361331,361449..361517) FT /colour=11 FT /locus_tag="Nham_0331" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(362135..362470) FT /locus_tag="Nham_0332" FT /product="conserved hypothetical protein" FT /note="TIGRFAM: conserved hypothetical protein: (0.00011)" FT /note="SPTR top hit: 'Q3PWK0 Phage head-tail adaptor, FT putative. Nitrobacter hamburgensis X14., evalue=1e-56, FT 100% identity hit'" FT /note="COGs: 'evalue=8e-07 score=45.7 category=R FT group=COG5614 Bacteriophage head-tail adaptor' " FT /note="InterPro IPR013045" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MTTAGELREKVELQALVTVPDGAGGSTQSWETVVTASAAIKVLKAGEAVMQGRLATEQTLVVTLRWQPALADALTTWKLK FT NSRTGNLYGIKSITPDVRRAWVDILCQTDTL* " FT gene complement(362135..362470) FT /locus_tag="Nham_0332" FT /colour=13 FT CDS complement(362467..364095) FT /locus_tag="Nham_0333" FT /product="phage Terminase" FT /note="PFAM: phage Terminase: (1.4e-26)" FT /note="SPTR top hit: 'Q3PWJ9 Phage Terminase. Nitrobacter FT hamburgensis X14., evalue=0.0, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_1472 category=Unassigned, FT evalue=1e-156, 52.264151% identity hit'" FT /note="COGs: 'evalue=4e-65 score=242 category=R FT group=COG4626 Phage terminase-like protein large subunit' FT " FT /note="InterPro IPR005021" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTAKSTFPEWIYDGSEILDPFGYGERAVTFLRRLKHPKSTLPGKAFQLDPWQERIVRRIYGPRHDDGRRIVNTVVMLLPR FT GNRKTSLGAALALLHTIGPERMPGSEVIFSASDRKQSGIAFKEARGIVQADKRLVKATKVYDAFNSAKKIAYPKDSVELE FT IISADAPSSEGRTPAFVLADETHIWRGKDLWTVLTNGLDKIDNSLLVVTTTAGRGTDNIGYEIIDRARKIARGEIVDPTV FT LPVLFEAEPDCDYTSEEVWRRVNPGSPHGYPSIEGFRRHVKRAQDNPTERSSLKRYKLNIWEDSSSSPFVDMLVYDEGEG FT EIDVAALEGQPCWLGVDLSSSIDLSVVIACFRDGDDYVVQPHFFCPQDNLRQRQEATGAPYIEWARKGLITATPGNVIDF FT RVVEERIRELCQTYSVQEIACDPAMARNLLNNLLEDGLPAIEHRQGSLSMMPAIAELQRAIIGRKFKHGGHPVLRFCFAN FT VEAETNAAGHIVRFTKQKKWLSIDGAQASAMSVNRASAGGSAATTSLYDDPEWETALQGFNA* FT " FT gene complement(362467..364095) FT /locus_tag="Nham_0333" FT /colour=11 FT CDS complement(364098..364511) FT /locus_tag="Nham_0334" FT /product="phage terminase, small subunit, putative, P27" FT /note="PFAM: phage terminase, small subunit, putative, FT P27: (2.9e-19)" FT /note="SPTR top hit: 'Q3PWJ8 Phage terminase, small FT subunit, putative, P27. Nitrobacter hamburgensis X14., FT evalue=2e-73, 100% identity hit'" FT /note="KEGG top hit: 'rsp:RSP_2353 category=Unassigned, FT evalue=9e-17, 38.059701% identity hit'" FT /note="COGs: 'evalue=3e-16 score=77.7 category=L FT group=COG3747 Phage terminase small subunit' " FT /note="InterPro IPR006448" FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="MKHTAGRKATPQPIADAIRTVPQPPKHFPPAAKAEWKRVMPVLVERRVISVADLHAVERFCEAAADIVDARAAIAQYGAY FT VENRLGELKRNPAFATLREATGESRRWAAELGLSPSSRSRAGVHEDQDADDDSPLSM* FT " FT gene complement(364098..364511) FT /locus_tag="Nham_0334" FT /colour=2 FT CDS complement(365205..365558) FT /locus_tag="Nham_0335" FT /product="HNH nuclease / phage PHI-105 holin-like protein FT " FT /note="SPTR top hit: 'Q3PX51 Probable phage phi-105 FT holin-like protein. Nitrobacter hamburgensis X14., FT evalue=3e-31, 60% identity hit'" FT /note="KEGG top hit: 'rsp:RSP_2355 category=Unassigned, FT evalue=8e-16, 41.176471% identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MPFAAPRLCTCGRVVPAGKRCECSIKRKAERDKLRPAAPQRGYDAEWRRLSKAYLAEPGNDVCADCGRPAVLVAHRVSIR FT KAPHLRLVRSNWKPSCIACNNRQNIACEGGFGRPIKQ* " FT gene complement(365205..365558) FT /locus_tag="Nham_0335" FT /colour=11 FT CDS complement(365784..366170) FT /locus_tag="Nham_0336" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PWJ6 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=6e-65, 100% identity FT hit'" FT /note="KEGG top hit: 'nwi:Nwi_1624 category=Unassigned, FT evalue=4e-35, 59.230769% identity hit'" FT /note="InterPro IPR002453" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MRDIANNIGVDQTLSPVDYAATTKGTAVDLQGFNSAAVIVNTGAITTAGLYVVKVQESDTTTDGDFTDVVAGDLVGTLPA FT SLAATSTYKQGYIGNKRYIRAVITKTSGTSIVAGAIVVKGNAADKPVA* " FT gene complement(365784..366170) FT /locus_tag="Nham_0336" FT /colour=13 FT CDS complement(366230..367378) FT /locus_tag="Nham_0337" FT /product="phage major capsid protein, HK97" FT /note="PFAM: phage major capsid protein, HK97: (2.3e-51)" FT /note="SPTR top hit: 'Q3PUT0 Phage major capsid protein, FT HK97. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_1625 category=Unassigned, FT evalue=4e-95, 50.000000% identity hit'" FT /note="COGs: 'evalue=2e-48 score=186 category=R FT group=COG4653 phage phi-C31 gp36 major capsid-like FT protein' " FT /note="InterPro IPR002110:IPR006444" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="MTFHFLETKSAADVDEGDPSIVEVKSALTALTEDVKKATAPVADLTKRLDEIETKINRPAIHTEKKDEISDERKAFTGYL FT RRGKETLQPDEIKSLRVADDTSGGYLAPAEFSAEVVKGIVEMSPIRQAARVGSTSSGEVLLPKRTGRPTGSWVGETDARP FT GTESSYGQIEVPIHEMACYVDVSQRLLEDAAVNVESEVASDLSEEFGRLEGLGFSQGDGVKKPIGIMEAAGVAYTATGNA FT STLGTAPADTLIDVFYSLPAYYRNRGVWLMNSKTIAAVRKLKDGSTGAYLWQPGLAQGDPATILGRPLIEDPTMDDIGSA FT AEPILFGSVSDAYRIYDRLNLSIMRDPYSQATSGVVRFHARRRTGGALVLADALRKIKCATS* FT " FT gene complement(366230..367378) FT /locus_tag="Nham_0337" FT /colour=11 FT CDS complement(367386..367919) FT /locus_tag="Nham_0338" FT /product="peptidase U35, phage prohead HK97" FT /note="PFAM: peptidase U35, phage prohead HK97: (2.1e-53)" FT /note="SPTR top hit: 'Q3PUT1 Peptidase U35, phage prohead FT HK97. Nitrobacter hamburgensis X14., evalue=4e-93, 99% FT identity hit'" FT /note="KEGG top hit: 'bmb:BruAb1_0609 category=Unassigned, FT evalue=8e-39, 53.691275% identity hit'" FT /note="COGs: 'evalue=3e-21 score=95.1 category=R FT group=COG3740 Phage head maturation protease' " FT /note="InterPro IPR006433" FT /codon_start=1 FT /transl_table=11 FT /colour=11 FT /translation="LKNLETGVVQLDVKSVGDDGVFSGYASLFGITDLGRDIVTRGAFTKSLKQKSASRVKMLREHDQTEPIGVWTEIVEDTKG FT LRVSGRLVLDTVKGRETHALLKAGALDGLSIGYRTKSARFDKAKGTRMLDEVELHEISVVTFPMLPSATVEAVKSNGPTT FT FRALVDAINSARTSINS* " FT gene complement(367386..367919) FT /locus_tag="Nham_0338" FT /colour=11 FT CDS complement(367916..369139) FT /locus_tag="Nham_0339" FT /product="Phage portal protein, HK97" FT /note="TIGRFAM: Phage portal protein, HK97: (4.3e-55)" FT /note="PFAM: phage portal protein: (1.4e-33)" FT /note="SPTR top hit: 'Q3PUT2 Phage portal protein, HK97. FT Nitrobacter hamburgensis X14., evalue=0.0, 100% identity FT hit'" FT /note="KEGG top hit: 'rsp:RSP_2360 category=Unassigned, FT evalue=8e-68, 37.438424% identity hit'" FT /note="COGs: 'evalue=8e-39 score=155 category=S FT group=COG4695 Phage-related protein' " FT /note="InterPro IPR006427:IPR006944" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MGWFSRKSAPVAEVKSELTDCTSDSWAALCDAFAISASGVTVTVDALMRCPPAEAAVSITSNSTAGVSCRLLQDDADDSE FT RAAKQHPAYQLVHGFSNEWMSAGEIRRRVTLDAIIFGDGFALVTRTADRPAEILYVPRQVVVLEYKPDGEPVYRIDGREY FT GPADVIHLQTPNPSNPLQQRGLGLLHTGRDAIGLAILLERSASQLFKNNSRPGGVLSFKGSLNPVAAGRIAQMWRSAHGG FT DKSGGIAVIDNEGKYEPIAFSSVDSQAIEQRAFVVSEISRLTRVPATLLSDMSRATWSNSVQLDLQFVKYGLQPWLRAWC FT DAYARTLLTPEERATMHFEFDLSQLLMADPAARATAFGQYRSAGVMTANDVRRELNLPPLPDGDVLASPHVQSPANDNTQ FT PPKDQAA* " FT gene complement(367916..369139) FT /locus_tag="Nham_0339" FT /colour=13 FT CDS complement(369340..369606) FT /locus_tag="Nham_0340" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PUT3 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=3e-44, 98% identity FT hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="VRHPHLLEIPMTIKVNSPAAYNGRLVKVASISGAEAEVVWIGRDGEIEVRDVWVGELVSFDDAMNPQTSWSAASALEHESKIRAWRAE*" FT gene complement(369340..369606) FT /locus_tag="Nham_0340" FT /colour=13 FT CDS complement(369585..370481) FT /locus_tag="Nham_0341" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PUT4 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=0.0, 99% identity FT hit'" FT /note="COGs: 'evalue=0.009 score=34.9 category=C FT group=COG1031 Uncharacterized Fe-S oxidoreductase' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MKAAIASGMSDRQATLTVPGAPSDAAWSRYLQNRPERAAEIAEVRHAKGKPSFDRIAANFDALIKLIGEGHSAVTAGREL FT GINGDRLTEYLLAHPQKRPAYVAAMVKRAKVLGIRSTTIKGMPRRKDFTEAEFDAALALIARSTAPDLATALRRADLPRN FT GSLQRRARKDPAFRGRLDRAYSAHGASTHYLRYIKDPTEPRMLLASLLADKDFAAGFNRFKSQRYDRHDLAQEYCLAVLE FT GRLSKADLKKNKAMNDIRKRALGNSLAFTSLDAPSHGDGDSRYSVGDTIASPCGIHTY* FT " FT gene complement(369585..370481) FT /locus_tag="Nham_0341" FT /colour=13 FT CDS complement(370827..371612) FT /locus_tag="Nham_0342" FT /product="hypothetical protein" FT /note="SPTR top hit: 'Q3PUT5 Hypothetical protein. FT Nitrobacter hamburgensis X14., evalue=1e-148, 100% FT identity hit'" FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MQHANDNTPRTPEQHRAYVASLRQDDDETEVRARARHWPTFGRLKRADRWLEIQTLERYADDEGIAMPEGNLHHANDNSP FT VNEDGRMEIGRVDSRLVDARLDEENPTADEIAAAAWADEKDRKEGRPEMATRIQFGAYGKIVAVKVRGRYRLLEETFSES FT RGAEDEKASLGAGYGLKNELPDAQDEAARRMDHEAMKRRLGDETCRLVELACGDATSEEIGEMHGTAGKTAERLGVRLVD FT IAIGKLMAAYAARDAADREAA* " FT gene complement(370827..371612) FT /locus_tag="Nham_0342" FT /colour=13 FT CDS complement(371760..373799) FT /locus_tag="Nham_0343" FT /product="RecA-family ATPase-like" FT /note="SPTR top hit: 'Q3PUT6 Similar to RecA-family FT ATPase. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_1486 category=Unassigned, FT evalue=4e-33, 26.903553% identity hit'" FT /note="COGs: 'evalue=8e-12 score=66.2 category=L FT group=COG3598 RecA-family ATPase' " FT /codon_start=1 FT /transl_table=11 FT /colour=2 FT /translation="LNALQAKQTFTDPVRTHVEMLHDLAAGIDGVFVVSAYNVSLPKGGGTITKHNVGDVNGMVEAIAAHSDTPGANVYTGLHL FT MKTGLARGKRGTRSDVVAVLGLVADMDADTGNAGNLPFEPSYIIETSPGNQQPVWLFDKPLTVTEAVPLAAALKRATGSD FT HGTADVDHVWRIPGTKNWPNEAKLKRGRSAEPAPVRYLHEWRGDLMNVDELRAALEPWASAPANEAKPVQLGELPDIDGV FT VASPKLAALLAADDVEDRSKHASRVVEQMMFDGHDVETAAALFLSASGNWSARYQGKGARDDFARMWGKFQKPDYSGLAD FT GLLRKSDPPIAANDNEPKSRFNLTWFDDIEADKPKAWVIKNVLGRGEHTLISGLPGTGKSVVATDGACHVAAGMEWFGRK FT TTQGLVLFVAAERKALTERRMMAFRKHHGVKDVPLLVLGGRLDLTSSLADAKALAGIVQQAEIDCGQKCVWIIIDTLTRV FT FGAGDQNTSKDMGRFIQACDELIRLTGAHVTVVHHTAWSGERGKGAIDLDGAVDASFMVVKNSGTYTLKCDGANDGDEGT FT IATFTMQSVELAKDEDGEPTTAPVVVPGESLADRLALKGHTKGVLAALNSIIEDDGIEPEGSDFPEGIMVVKEKQWRAAY FT YEAESGASVETLKKRFGRAKKDLLAKGQVKQIGQWYWPS* " FT gene complement(371760..373799) FT /locus_tag="Nham_0343" FT /colour=2 FT CDS complement(374272..375360) FT /locus_tag="Nham_0344" FT /product="conserved hypothetical protein" FT /note="SPTR top hit: 'Q3PUT7 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_2668 category=Unassigned, FT evalue=1e-170, 76.519337% identity hit'" FT /note="COGs: 'evalue=4e-91 score=328 category=R FT group=COG5621 secreted hydrolase' " FT /codon_start=1 FT /transl_table=11 FT /colour=13 FT /translation="MSVSAKISRRAFATGLAVVAFGRKVSLAQGFAGLGGEASGFAAVTPGRSFVFPADHAPHPDYRIEWWYLTANLSDAEGRA FT YGAQWTLFRQAMQPGPQRDGWANQQIWMGHAAVTRADTHRYSETFARGGVGQAGAEADPFRAWIDSWQMRGLDGMSAMNI FT APLQINATGADFSYTLRLDADKALVLEGDAGYSRKSERGQASYYYSQPYFTADGTVTIDGKSVSVSGQAWMDREWSSQPL FT APDQTGWDWFSLHLGTGEKLMLFRLRQTDAKPSFAGNWIGPDGQSVALSPESIEMTPIAMTEVADRKLPTSWRIAVRDRG FT LAIETLPLYARSWMGTSFSYWEGPVSFTGTHRGIGYLEMTGY* " FT gene complement(374272..375360) FT /locus_tag="Nham_0344" FT /colour=13 FT sig_peptide complement(375274..375360) FT /colour=11 FT /locus_tag="Nham_0344" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.912) with cleavage site probability 0.809 at FT residue 29" FT CDS complement(375350..377809) FT /locus_tag="Nham_0345" FT /product="protein of unknown function DUF214" FT /note="PFAM: protein of unknown function DUF214: FT (3.1e-15)" FT /note="SPTR top hit: 'Q3PUT8 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 100% FT identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_2669 category=Unassigned, FT evalue=0.0, 80.853659% identity hit'" FT /note="COGs: 'evalue=6e-17 score=83.4 category=Q FT group=COG3127 ABC-type transport system involved in FT lysophospholipase L1 biosynthesis permease component' " FT /note="InterPro IPR003838" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VKQGFWILAVLLSHWRRHPLQLTTLMIGLISATALWSGVQALNQQARISYDRAAAVFGGARIAMLVGQQDTFPQQLFVDL FT RRAGWPVSPVLEGRVRIHGKTFRLLGIEPVTFPAEAGSIPAIGTSDLTSFIAPPGETLVAPETLTELTGTEGTALRTDDG FT ALLPPLKVQAQLAPGVVIVDIGVAQSLLHLPDQLSRLSIGKTRSTHAPLEAVTGDKLRYVAPDAETDLERLTDSFHLNLS FT AFGLLSFLVGLFIVYSAIGLAFEQRMPMLRTLRACGASSRMLNGVLLIELLVLALAAGLIGLACGYLIAAALLPNVAASL FT QGLYGARLPGQLTLRPEWWAAGLAMSALGTLVAATTSLLRVVRLPVLAMAQPYAWQQAQRRWLRWQGLCAVAMLVTAVAV FT LTIGDSLVSGFAVLAALLLGAALTLPVLLGFVLHAGERSTRRPLVMWFWADSRQQLPGLSLALMALLLALAVNVGVGTMV FT ESFSKTFATWLDGRLAADVYVNARDDAQARDIETRLRARPEVTAILPSGRAETEIGGWPVEVLGLADHATYRDRWPLLRS FT QANAWDEVKSGQAALISEQLARKLKLRLGDRLTISTPGGNWPVDIAAIYADYGNPKGQIAVNIVAFTSRFPDLPRTRFGL FT RVTPGKIAPLIDDMRKTFHLDESRLSDQSTLKAESTRIFNRTFAVTAALNTFTLGVAGVALLTSLLTLSNSRLPQLAPLW FT ALGLTRRQLAGIELLKTLSVAFVTAMLALPLGLLVAWCLIAVVNVRAFGWRLPFHVFPLHLIELLGVAMLASLLAMLVPV FT LKLMRMPPATLIKVFADER* " FT gene complement(375350..377809) FT /locus_tag="Nham_0345" FT /colour=9 FT misc_feature complement(order(375407..375472,375518..375583,375692..375757,376376..376441,376502..376567,376598..376663,376727..376792,376871..376963,377024..377089)) FT /colour=11 FT /locus_tag="Nham_0345" FT /note="9 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(377684..377809) FT /colour=11 FT /locus_tag="Nham_0345" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 0.848) with cleavage site probability 0.630 at FT residue 42" FT CDS complement(377806..378489) FT /locus_tag="Nham_0346" FT /product="ABC transporter related" FT /note="PFAM: ABC transporter related: (3.5e-57)" FT /note="SMART: ATPase: (6.2e-18) " FT /note="SPTR top hit: 'Q3PUT9 ABC transporter. Nitrobacter FT hamburgensis X14., evalue=1e-122, 100% identity hit'" FT /note="KEGG top hit: 'nwi:Nwi_2670 EC=3.6.3.25 FT category=Unassigned, evalue=7e-97, 80.803571% identity FT hit'" FT /note="COGs: 'evalue=6e-68 score=250 category=V FT group=COG1136 ABC-type antimicrobial peptide transport FT system ATPase component' " FT /note="InterPro IPR001687:IPR003439:IPR003593" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MCVPTPSKAPMLDVQNLTKTYRSAQERITVLRGACLRVDAGESVALTGESGSGKSTLLHLIAGLDQADGGSIRLNETEVT FT ALADRGRAALRRDRLGLVFQQFNLIPSLTVADNLAFQSRIAGRHNSQWQSELVDRLGLGDLLNRYPEQLSGGQQQRVAIG FT RALAVRPPLLLADEPTGNLDEATADEVMDLARDLIKRTGCSFLMVTHSARLAATLDRQVLLSAGLIS* FT " FT gene complement(377806..378489) FT /locus_tag="Nham_0346" FT /colour=9 FT CDS complement(378592..379356) FT /locus_tag="Nham_0347" FT /product="band 7 protein" FT /note="PFAM: band 7 protein: (4.4e-70)" FT /note="SPTR top hit: 'Q3PUU0 Band 7 protein. Nitrobacter FT hamburgensis X14., evalue=1e-135, 100% identity hit'" FT /note="KEGG top hit: 'bja:bll4951 category=Unassigned, FT evalue=1e-117, 87.250996% identity hit'" FT /note="COGs: 'evalue=3e-36 score=145 category=O FT group=COG0330 Membrane protease subunits FT stomatin/prohibitin homologs' " FT /note="InterPro IPR001107:IPR001972" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="MMLDYVTYIVLAVVVIAFLSSSIRILREYERGIIFTLGRFTGVKGPGLIILIPFVQQMVKADLRVMVQDVPPQDVISRDN FT VSVKVNAVLYFRIIDPERAIIKVENFMAATSQLAQTTLRSVLGKHELDEMLAERDKLNAAIQEILDQQTDAWGIKVTNIE FT IKDIDLNENMVRAIAKQAEAERLRRAKVINAMGEQQAAEKLVEAGRILAQEPQAMQLRYFAALHDIAGERSSTVVFPLPM FT DLLSHLKPRPDGTS* " FT gene complement(378592..379356) FT /locus_tag="Nham_0347" FT /colour=9 FT misc_feature complement(order(379192..379257,379279..379344)) FT /colour=11 FT /locus_tag="Nham_0347" FT /note="2 probable transmembrane helices predicted by FT TMHMM2.0" FT CDS complement(379353..380750) FT /locus_tag="Nham_0348" FT /product="protein of unknown function DUF107" FT /note="PFAM: protein of unknown function DUF107: FT (1.2e-33)" FT /note="SPTR top hit: 'Q3PUU1 Hypothetical protein FT precursor. Nitrobacter hamburgensis X14., evalue=0.0, 99% FT identity hit'" FT /note="KEGG top hit: 'bja:bll4952 category=Unassigned, FT evalue=0.0, 72.317597% identity hit'" FT /note="COGs: 'evalue=3e-99 score=355 category=O FT group=COG1030 Membrane-bound serine protease (ClpP class)' FT " FT /note="InterPro IPR002810" FT /codon_start=1 FT /transl_table=11 FT /colour=9 FT /translation="VQAVQATLAVALAAAALVFSPLPASTEENGKLVLTIAIDGAIGPATTGYVKDALAKARERHAEAVILRLNTPGGLASSMR FT EIIADVLASPVPVIGYVAPSGAHAASAGTYILYATHIAAMAPGTNLGAATPVQIGSPVPGLPGIPDKGDKDKKNGSQQPE FT PTDAMTAKVTNDAVAFIRSLAELRGRNADWAEKAVREAASLSASAALQAGVVELIARSPAELLRKVDGRTVDLVNGDRRH FT LATKDATIETIDPGWVSQFLSIITDPNVALILLLVGTYGLLFEFMSPGAVAPGVVGTICLLLGLYALNLLPISYAGLGLM FT MLGIALLTIEAFNPTVVLGLGGVIAFVLGALMLFRNEASGYRLSWTFVGIVASMFTGLVLIVLGSLRRARKGPAQVGAQA FT MRGLPAEVLDWNDIEGHVFTQGERWQARSTEAFKPGDTVEVASITDLTLTVRRRPALRGGEGGVR* FT " FT gene complement(379353..380750) FT /locus_tag="Nham_0348" FT /colour=9 FT misc_feature complement(order(379593..379658,379689..379754,379770..379835,379881..379946)) FT /colour=11 FT /locus_tag="Nham_0348" FT /note="4 probable transmembrane helices predicted by FT TMHMM2.0" FT sig_peptide complement(380670..380750) FT /colour=11 FT /locus_tag="Nham_0348" FT /note="Signal predicted by SignalP 2.0 HMM (Signal peptide FT probabilty 1.000) with cleavage site probability 0.988 at FT residue 27" FT CDS 381121..383289 FT /locus_tag="Nham_0349" FT /product="periplasmic sensor hybrid histidine kinase" FT /note="PFAM: response regulator receiver: (1.7e-22) FT ATP-binding region, ATPase-like: (1.6e-29) histidine FT kinase A-like: (1.9e-08)" FT /note="SPTR top hit: 'Q3PUU2 Response regulator FT receiver:ATP-binding region, ATPase-like:Histidine kinase FT A, N-terminal. Nitrobacter hamburgensis X14., evalue=0.0, FT 99% identity hit'" FT /note="KEGG top hit: 'rpa:RPA2135 category=Unassigned, FT evalue=1e-158, 44.699140% identity hit'" FT /note="COGs: 'evalue=3e-30 score=127 category=T FT group=COG4191 Signal transduction histidine kinase FT regulating C4-dicarboxylate transport system' " FT /note="InterPro FT IPR001789:IPR003594:IPR003661:IPR004358:IPR005467" FT /codon_start=1 FT /transl_table=11 FT /colour=15 FT /translation="VEHGQSHRAVQSERHAAVRLLKALMVASVLLPMALFAITAWVDYRNFERITNERIDRSLDILHEHSLKVLETTERAYAEV FT NEVVRGMSDNDIRLNEAALNKRLKQIVTGTPQMQGIEIIDRDGHPLVSSNGLLTPGDIDFSKAEYFTALKSREGGTYVST FT INAPRPGVPGYFISLSQRRPWDDGTFNGVISIAVPTSYFENFYAHISDTVDYFALVRADGHFLARYPVVSPASLLSFDDD FT KDFRTRIAHGHDYSIYTAESPYDHITRRIGYRKIAGYPLYVLVGVEWKAIVSEWLRYNINYLIFGAPLMVFLFAVLGLAL FT RRTQRLYDESERREAVENALRHAQRMEAIGQLTGGVAHDFNNLLMIISGSVQRLRRELTDKKSLRLLDMIGTATHRGETL FT TRHLLTYSRRQTLTPEVIDLAQRLPVLRELLTRSLRTDIEINVEVPDTVCAVRVDPSEFELAILNLAVNAKDAMPNGGAL FT SMSARPVTLKGDASEEGLSGDFVAVYVADTGQGIPADVMMRVFEPFFTTKDVSKGTGLGLSQVYGFAKQSGGTATVTSTE FT GQGTTVTLYLPRSLEQPQPAEPPLQAPAQAEAAGTVLLVEDDVDVADVGASYMRQLGYRVRSVADVQAALAALQVDAQVD FT LVFSDIMMPGGRNGLDLAREIGERFPHIPVLLTTGYSASAQDAARYGVVVLQKPYDLESLRRHVREAMEQARVPPAALGV FT AG* " FT gene 381121..383289 FT /locus_tag="Nham_0349" FT /colour=15 FT misc_feature order(381178..381246,381940..381993,382012..382080) FT /colour=11 FT /locus_tag="Nham_0349" FT /n